AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024442.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024442.01.T02 MTR_5g011220 82.800 250 4 1 1 250 105 315 6.19e-143 403
MsG0580024442.01.T02 MTR_4g102440 68.293 246 39 1 1 246 113 319 5.53e-115 332
MsG0580024442.01.T01 MTR_5g011220 82.800 250 4 1 1 250 105 315 6.19e-143 403
MsG0580024442.01.T01 MTR_4g102440 68.293 246 39 1 1 246 113 319 5.53e-115 332
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024442.01.T02 AT4G22890 67.600 250 42 1 1 250 111 321 6.02e-117 337
MsG0580024442.01.T02 AT4G22890 67.600 250 42 1 1 250 112 322 7.41e-117 337
MsG0580024442.01.T02 AT4G22890 67.600 250 42 1 1 250 114 324 1.20e-116 337
MsG0580024442.01.T02 AT4G22890 67.600 250 42 1 1 250 114 324 1.20e-116 337
MsG0580024442.01.T02 AT4G11960 64.400 250 50 1 1 250 103 313 7.17e-111 322
MsG0580024442.01.T02 AT4G11960 64.400 250 50 1 1 250 86 296 2.25e-110 320
MsG0580024442.01.T02 AT4G22890 66.814 226 36 1 1 226 114 300 3.02e-102 299
MsG0580024442.01.T01 AT4G22890 67.600 250 42 1 1 250 111 321 6.02e-117 337
MsG0580024442.01.T01 AT4G22890 67.600 250 42 1 1 250 112 322 7.41e-117 337
MsG0580024442.01.T01 AT4G22890 67.600 250 42 1 1 250 114 324 1.20e-116 337
MsG0580024442.01.T01 AT4G22890 67.600 250 42 1 1 250 114 324 1.20e-116 337
MsG0580024442.01.T01 AT4G11960 64.400 250 50 1 1 250 103 313 7.17e-111 322
MsG0580024442.01.T01 AT4G11960 64.400 250 50 1 1 250 86 296 2.25e-110 320
MsG0580024442.01.T01 AT4G22890 66.814 226 36 1 1 226 114 300 3.02e-102 299

Find 24 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGAAATTGGTTTATCTTAT+TGG 0.124615 5:+5021247 None:intergenic
TATGTCATTCATTAATTATT+AGG 0.224950 5:-5020877 MsG0580024442.01.T01:three_prime_UTR
CAAGGTCTTCCATTAGTTAA+AGG 0.238871 5:-5021125 MsG0580024442.01.T01:three_prime_UTR
TATTTACACTAGTTAGAAAT+TGG 0.277068 5:+5021234 None:intergenic
ACTTCAATGCCTTTAACTAA+TGG 0.314713 5:+5021116 None:intergenic
TATGTTGTAGCATAAACTTT+TGG 0.376194 5:-5021340 MsG0580024442.01.T01:three_prime_UTR
CTCCACAAATTTGTTTCAGC+TGG 0.397476 5:-5020901 MsG0580024442.01.T01:three_prime_UTR
AATGTCAACCATTGGAGTTA+AGG 0.424926 5:+5020971 None:intergenic
ACTTATGCAGTACTTCCTTC+TGG 0.426241 5:+5021408 None:intergenic
CTCTCACTCTGGAACACCAT+TGG 0.481338 5:-5021088 MsG0580024442.01.T01:three_prime_UTR
CTGAAACAAATTTGTGGAGG+TGG 0.503515 5:+5020905 None:intergenic
CATTGATTAACATACTTGGT+AGG 0.503938 5:-5020952 MsG0580024442.01.T01:three_prime_UTR
GTTATATCTCTAATACATAC+AGG 0.517465 5:-5021192 MsG0580024442.01.T01:intron
TTGACATTGATTAACATACT+TGG 0.521533 5:-5020956 MsG0580024442.01.T01:three_prime_UTR
ATGAGGATCCTTAACTCCAA+TGG 0.529643 5:-5020979 MsG0580024442.01.T01:three_prime_UTR
AGCCAGCTGAAACAAATTTG+TGG 0.537748 5:+5020899 None:intergenic
TGTTAATCAATGTCAACCAT+TGG 0.554696 5:+5020963 None:intergenic
AACAAATTTGTGGAGGTGGT+AGG 0.585634 5:+5020909 None:intergenic
ATCAAGTCAATAAACTGTCA+AGG 0.585833 5:-5021143 MsG0580024442.01.T01:three_prime_UTR
TGAAGTCATTACTCTCACTC+TGG 0.591249 5:-5021099 MsG0580024442.01.T01:three_prime_UTR
AGGAAGTACTGCATAAGTGA+AGG 0.596142 5:-5021403 MsG0580024442.01.T01:exon
AGATTGATTACATTGCCAGA+AGG 0.638843 5:-5021423 MsG0580024442.01.T01:CDS
GTATACGCATATCAAGCCAA+TGG 0.649163 5:+5021072 None:intergenic
CAGCTGAAACAAATTTGTGG+AGG 0.668822 5:+5020902 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAAAAGAATATTGTAT+TGG + Chr5:5021052-5021071 None:intergenic 10.0%
!! TAATAAAAGAAAAATGAATA+TGG + Chr5:5023457-5023476 None:intergenic 10.0%
!!! AGATAGTTATTTTTAATTAA+AGG - Chr5:5023289-5023308 MsG0580024442.01.T01:intron 10.0%
!!! ATAGTTATTTTTAATTAAAG+GGG - Chr5:5023291-5023310 MsG0580024442.01.T01:intron 10.0%
!!! GATAGTTATTTTTAATTAAA+GGG - Chr5:5023290-5023309 MsG0580024442.01.T01:intron 10.0%
!! CATAAAAGACATTAAATAAA+AGG - Chr5:5022191-5022210 MsG0580024442.01.T01:intron 15.0%
!! TATGTCATTCATTAATTATT+AGG - Chr5:5024111-5024130 MsG0580024442.01.T01:five_prime_UTR 15.0%
!!! AATATATTTTACAGTATTCA+AGG + Chr5:5023621-5023640 None:intergenic 15.0%
!!! GTTTCTATTTTTACTTTAAT+CGG + Chr5:5022751-5022770 None:intergenic 15.0%
!!! TTTTTTTTTTTTGAGTTATG+AGG - Chr5:5023992-5024011 MsG0580024442.01.T01:five_prime_UTR 15.0%
!! AATACATGAGTTTACAATAT+TGG - Chr5:5021742-5021761 MsG0580024442.01.T01:intron 20.0%
!! ATACTATTTGTTTCATTCAT+TGG - Chr5:5021326-5021345 MsG0580024442.01.T01:three_prime_UTR 20.0%
!! TAAAAAGAATATTGTATTGG+TGG + Chr5:5021049-5021068 None:intergenic 20.0%
!! TATTTACACTAGTTAGAAAT+TGG + Chr5:5023757-5023776 None:intergenic 20.0%
!! TCTTCTGTTTATTATTGAAT+AGG - Chr5:5021561-5021580 MsG0580024442.01.T01:intron 20.0%
!! TTATGACATTAACAATCTTT+AGG - Chr5:5021272-5021291 MsG0580024442.01.T01:intron 20.0%
!!! AAAAGATTTCTTGATTTTGA+AGG - Chr5:5023212-5023231 MsG0580024442.01.T01:CDS 20.0%
!!! TAGAAATTGGTTTATCTTAT+TGG + Chr5:5023744-5023763 None:intergenic 20.0%
!!! TTTTCAAAGAAATCAATGTA+TGG + Chr5:5022542-5022561 None:intergenic 20.0%
!!! TTTTTGTAATTTATCTCTGT+TGG - Chr5:5023240-5023259 MsG0580024442.01.T01:intron 20.0%
! AACATACATGAATCATTTCA+AGG + Chr5:5022288-5022307 None:intergenic 25.0%
! AACTATCTTAGCATATGTAA+TGG + Chr5:5023277-5023296 None:intergenic 25.0%
! ACTATATTGTCAATTTCAAG+TGG - Chr5:5023356-5023375 MsG0580024442.01.T01:CDS 25.0%
! AGTGTACTAGATTTATAACA+AGG + Chr5:5022665-5022684 None:intergenic 25.0%
! ATAACATTCACTGAAGTTAT+TGG + Chr5:5021690-5021709 None:intergenic 25.0%
! ATATCTAATAAGAGCTTCAT+CGG - Chr5:5021920-5021939 MsG0580024442.01.T01:intron 25.0%
! ATCACTGTAAACCTATAAAA+GGG + Chr5:5022379-5022398 None:intergenic 25.0%
! ATCCATATTGAATCATCAAT+TGG + Chr5:5022043-5022062 None:intergenic 25.0%
! ATGACTTAATAATGCACAAA+AGG + Chr5:5023424-5023443 None:intergenic 25.0%
! ATTATCTGCTCTATAATATC+AGG - Chr5:5022932-5022951 MsG0580024442.01.T01:intron 25.0%
! ATTCATCTAATGATTGCTAA+AGG - Chr5:5023078-5023097 MsG0580024442.01.T01:CDS 25.0%
! CTGAATTTCAGTATAAATAC+AGG + Chr5:5022255-5022274 None:intergenic 25.0%
! GTTATATCTCTAATACATAC+AGG - Chr5:5023796-5023815 MsG0580024442.01.T01:five_prime_UTR 25.0%
! TCTAAATAAGCAATTAGAGA+TGG + Chr5:5023033-5023052 None:intergenic 25.0%
! TGAATTAAAACTGAAGCTAA+AGG - Chr5:5021856-5021875 MsG0580024442.01.T01:CDS 25.0%
! TTATACTGAAATTCAGCTTA+AGG - Chr5:5022259-5022278 MsG0580024442.01.T01:intron 25.0%
! TTTGTTGAAAACTTAGTATC+CGG + Chr5:5021298-5021317 None:intergenic 25.0%
!! AACAAACATATGATAATGAG+AGG + Chr5:5021515-5021534 None:intergenic 25.0%
!! CTAATTAATACCCCTTTTAT+AGG - Chr5:5022365-5022384 MsG0580024442.01.T01:intron 25.0%
!! TACCAATTGATGATTCAATA+TGG - Chr5:5022038-5022057 MsG0580024442.01.T01:intron 25.0%
!! TATGTTGTAGCATAAACTTT+TGG - Chr5:5023648-5023667 MsG0580024442.01.T01:intron 25.0%
!! TCTAACTGTTGACTATTTAA+AGG - Chr5:5022398-5022417 MsG0580024442.01.T01:intron 25.0%
!! TTGACATTGATTAACATACT+TGG - Chr5:5024032-5024051 MsG0580024442.01.T01:five_prime_UTR 25.0%
!! TTTTCTCTTTTCTTTACAGA+TGG - Chr5:5022066-5022085 MsG0580024442.01.T01:intron 25.0%
!!! AGGTTGATATTTTCATTTCA+TGG - Chr5:5021876-5021895 MsG0580024442.01.T01:intron 25.0%
AACTCTTTATCACTCATGAT+TGG + Chr5:5021833-5021852 None:intergenic 30.0%
ACAAAAAAGAAGAAGTCACT+TGG - Chr5:5021439-5021458 MsG0580024442.01.T01:CDS 30.0%
ACTTCAATGCCTTTAACTAA+TGG + Chr5:5023875-5023894 None:intergenic 30.0%
AGTTCATGTTGCATTTGATT+TGG - Chr5:5022501-5022520 MsG0580024442.01.T01:intron 30.0%
ATCAAGTCAATAAACTGTCA+AGG - Chr5:5023845-5023864 MsG0580024442.01.T01:five_prime_UTR 30.0%
ATGCAAATGCTCATAAACAA+TGG + Chr5:5022171-5022190 None:intergenic 30.0%
CAAACAACAAATAATGCAGA+GGG - Chr5:5022598-5022617 MsG0580024442.01.T01:CDS 30.0%
GAAAAAGATAGTGAAACAAG+AGG - Chr5:5020893-5020912 MsG0580024442.01.T01:three_prime_UTR 30.0%
GATCACTGTAAACCTATAAA+AGG + Chr5:5022380-5022399 None:intergenic 30.0%
TAAGATAAGACCTTGTTGAT+CGG + Chr5:5021250-5021269 None:intergenic 30.0%
TCACTGTAAACCTATAAAAG+GGG + Chr5:5022378-5022397 None:intergenic 30.0%
TGTTAATCAATGTCAACCAT+TGG + Chr5:5024028-5024047 None:intergenic 30.0%
TTCTTCTGAGCAAAAATTTC+TGG - Chr5:5021778-5021797 MsG0580024442.01.T01:CDS 30.0%
! ACAATATTGGTTATTTGTGC+AGG - Chr5:5021755-5021774 MsG0580024442.01.T01:intron 30.0%
! AGCTAGTTCTTCTAATTATG+AGG + Chr5:5021020-5021039 None:intergenic 30.0%
! CATTGATTAACATACTTGGT+AGG - Chr5:5024036-5024055 MsG0580024442.01.T01:five_prime_UTR 30.0%
! GCTAGTTCTTCTAATTATGA+GGG + Chr5:5021019-5021038 None:intergenic 30.0%
! GTATGTGTTGTTAAGCTATT+GGG + Chr5:5022729-5022748 None:intergenic 30.0%
! TCTTTTCTTTACAGATGGAA+GGG - Chr5:5022071-5022090 MsG0580024442.01.T01:intron 30.0%
! TTTTTGTCTATGCTGCAATA+TGG + Chr5:5021426-5021445 None:intergenic 30.0%
!!! CTCAAGTCTTTTTTCAAAAC+TGG + Chr5:5022796-5022815 None:intergenic 30.0%
!!! TGTGAACTTTTTCATAGACA+AGG - Chr5:5023673-5023692 MsG0580024442.01.T01:intron 30.0%
AAAGGCAACTATGTCAAATG+AGG - Chr5:5021600-5021619 MsG0580024442.01.T01:intron 35.0%
AATGTCAACCATTGGAGTTA+AGG + Chr5:5024020-5024039 None:intergenic 35.0%
AGATTGATTACATTGCCAGA+AGG - Chr5:5023565-5023584 MsG0580024442.01.T01:five_prime_UTR 35.0%
ATCTCAAAGAAGAACTCATG+TGG - Chr5:5021632-5021651 MsG0580024442.01.T01:CDS 35.0%
CAAGGTCTTCCATTAGTTAA+AGG - Chr5:5023863-5023882 MsG0580024442.01.T01:five_prime_UTR 35.0%
CAATTAGAGATGGTAGAACA+AGG + Chr5:5023023-5023042 None:intergenic 35.0%
CATCATCATCATCATCGTAA+TGG - Chr5:5021075-5021094 MsG0580024442.01.T01:three_prime_UTR 35.0%
CATTGAAGGTGAATATGTGT+TGG + Chr5:5020988-5021007 None:intergenic 35.0%
CTTCCAATTCAATTCAATGC+CGG - Chr5:5021168-5021187 MsG0580024442.01.T01:intron 35.0%
GAATAGGCATTCTACTATGA+GGG - Chr5:5021577-5021596 MsG0580024442.01.T01:intron 35.0%
GACATTAACAATCTTTAGGC+CGG - Chr5:5021276-5021295 MsG0580024442.01.T01:intron 35.0%
GCAAACAACAAATAATGCAG+AGG - Chr5:5022597-5022616 MsG0580024442.01.T01:CDS 35.0%
GTTCAATGGTTGGAACAAAT+TGG - Chr5:5022623-5022642 MsG0580024442.01.T01:intron 35.0%
GTTTATCAAGGTCGATAGTA+GGG - Chr5:5022821-5022840 MsG0580024442.01.T01:intron 35.0%
TAGATGAAACAGACCAGTTT+GGG - Chr5:5022889-5022908 MsG0580024442.01.T01:CDS 35.0%
TCAGTATAAATACAGGACAG+AGG + Chr5:5022248-5022267 None:intergenic 35.0%
TCATGCACTCGATTAAAAGA+AGG + Chr5:5022479-5022498 None:intergenic 35.0%
TCTCAAAGAAGAACTCATGT+GGG - Chr5:5021633-5021652 MsG0580024442.01.T01:CDS 35.0%
TGAAACAAGAGGAGAAGAAA+GGG - Chr5:5020904-5020923 MsG0580024442.01.T01:three_prime_UTR 35.0%
TGAATAGGCATTCTACTATG+AGG - Chr5:5021576-5021595 MsG0580024442.01.T01:intron 35.0%
TGACAATATAGTCCCAAAGA+AGG + Chr5:5023348-5023367 None:intergenic 35.0%
TGAGATCAACTATCTGATAG+CGG - Chr5:5022984-5023003 MsG0580024442.01.T01:intron 35.0%
TGAGCAAACCATAGAATGAA+AGG + Chr5:5023171-5023190 None:intergenic 35.0%
TTAGATGAAACAGACCAGTT+TGG - Chr5:5022888-5022907 MsG0580024442.01.T01:CDS 35.0%
TTGAAAAAAGACTTGAGACG+AGG - Chr5:5022799-5022818 MsG0580024442.01.T01:intron 35.0%
! CTAGTACACTCACTTCATTT+TGG - Chr5:5022675-5022694 MsG0580024442.01.T01:intron 35.0%
! CTCTTTTCTTTACAGATGGA+AGG - Chr5:5022070-5022089 MsG0580024442.01.T01:intron 35.0%
! CTTCTCACATTTGACTTTGT+TGG + Chr5:5023390-5023409 None:intergenic 35.0%
! GGTATGTGTTGTTAAGCTAT+TGG + Chr5:5022730-5022749 None:intergenic 35.0%
! GTGTTTTCAGTACCACAATT+AGG + Chr5:5023323-5023342 None:intergenic 35.0%
!! AAGGTATCAAGTTGAATCTG+TGG - Chr5:5022139-5022158 MsG0580024442.01.T01:intron 35.0%
!! GAATATTGTATTGGTGGTGA+TGG + Chr5:5021043-5021062 None:intergenic 35.0%
!! TGAGGGTATTCATTCATTGA+AGG + Chr5:5021002-5021021 None:intergenic 35.0%
AAAGAAGAACTCATGTGGGA+AGG - Chr5:5021637-5021656 MsG0580024442.01.T01:CDS 40.0%
AACAAATTTGTGGAGGTGGT+AGG + Chr5:5024082-5024101 None:intergenic 40.0%
AAGATGAAACTGAGTGGTTC+TGG + Chr5:5023129-5023148 None:intergenic 40.0%
ACTGAAAACACCTCCTTCTT+TGG - Chr5:5023332-5023351 MsG0580024442.01.T01:CDS 40.0%
ACTTATGCAGTACTTCCTTC+TGG + Chr5:5023583-5023602 None:intergenic 40.0%
ACTTGAGACGAGGTTTATCA+AGG - Chr5:5022809-5022828 MsG0580024442.01.T01:intron 40.0%
AGCCAGCTGAAACAAATTTG+TGG + Chr5:5024092-5024111 None:intergenic 40.0%
ATAAGGCAATGACTAACGTG+TGG + Chr5:5020953-5020972 None:intergenic 40.0%
ATGAGGATCCTTAACTCCAA+TGG - Chr5:5024009-5024028 MsG0580024442.01.T01:five_prime_UTR 40.0%
CAAATCCAGTCACATCATCA+AGG + Chr5:5022966-5022985 None:intergenic 40.0%
CAAGTCAAGATGAAACTGAG+TGG + Chr5:5023135-5023154 None:intergenic 40.0%
CAATATAGTCCCAAAGAAGG+AGG + Chr5:5023345-5023364 None:intergenic 40.0%
CAATGGTTGGAACAAATTGG+AGG - Chr5:5022626-5022645 MsG0580024442.01.T01:intron 40.0%
CACTCAGTTTCATCTTGACT+TGG - Chr5:5023133-5023152 MsG0580024442.01.T01:CDS 40.0%
CAGCTGAAACAAATTTGTGG+AGG + Chr5:5024089-5024108 None:intergenic 40.0%
CTGAAAACACCTCCTTCTTT+GGG - Chr5:5023333-5023352 MsG0580024442.01.T01:CDS 40.0%
CTGAAACAAATTTGTGGAGG+TGG + Chr5:5024086-5024105 None:intergenic 40.0%
CTGCTGTTCCTTTCATTCTA+TGG - Chr5:5023160-5023179 MsG0580024442.01.T01:CDS 40.0%
GAAGGTGAATATGTGTTGGA+GGG + Chr5:5020984-5021003 None:intergenic 40.0%
GCATCTATTGCTTATGTGTC+TGG - Chr5:5021803-5021822 MsG0580024442.01.T01:CDS 40.0%
GGTTTATCAAGGTCGATAGT+AGG - Chr5:5022820-5022839 MsG0580024442.01.T01:intron 40.0%
GTATACGCATATCAAGCCAA+TGG + Chr5:5023919-5023938 None:intergenic 40.0%
GTGAAACAAGAGGAGAAGAA+AGG - Chr5:5020903-5020922 MsG0580024442.01.T01:three_prime_UTR 40.0%
GTTGGAGGGAAACAAAGATA+AGG + Chr5:5020970-5020989 None:intergenic 40.0%
TCAGTACCACAATTAGGACA+TGG + Chr5:5023317-5023336 None:intergenic 40.0%
TGAAGGTGAATATGTGTTGG+AGG + Chr5:5020985-5021004 None:intergenic 40.0%
TGAAGTCATTACTCTCACTC+TGG - Chr5:5023889-5023908 MsG0580024442.01.T01:five_prime_UTR 40.0%
! CGGCATTGAATTGAATTGGA+AGG + Chr5:5021170-5021189 None:intergenic 40.0%
! CTCACATTTGACTTTGTTGG+TGG + Chr5:5023387-5023406 None:intergenic 40.0%
! CTCCACAAATTTGTTTCAGC+TGG - Chr5:5024087-5024106 MsG0580024442.01.T01:five_prime_UTR 40.0%
!! AGGAAGTACTGCATAAGTGA+AGG - Chr5:5023585-5023604 MsG0580024442.01.T01:five_prime_UTR 40.0%
!! TTCTTCCTTGATGATGTGAC+TGG - Chr5:5022958-5022977 MsG0580024442.01.T01:intron 40.0%
AAGGACTCTAGTAGCAGAAG+TGG + Chr5:5021151-5021170 None:intergenic 45.0%
AGCAAATGTCAAGCCCAAAC+TGG + Chr5:5022905-5022924 None:intergenic 45.0%
AGTAGCAGAAGTGGAGAATG+TGG + Chr5:5021142-5021161 None:intergenic 45.0%
CCAAATTTATGCCTCAGCTG+TGG - Chr5:5023514-5023533 MsG0580024442.01.T01:intron 45.0%
CCAATTCAATTCAATGCCGG+TGG - Chr5:5021171-5021190 MsG0580024442.01.T01:intron 45.0%
CCACAGCTGAGGCATAAATT+TGG + Chr5:5023517-5023536 None:intergenic 45.0%
CCTAATGCAATCACAGTTGC+CGG + Chr5:5022441-5022460 None:intergenic 45.0%
CCTATTTGTGCTTTCCCCTA+AGG - Chr5:5021218-5021237 MsG0580024442.01.T01:intron 45.0%
CTAATGCAATCACAGTTGCC+GGG + Chr5:5022440-5022459 None:intergenic 45.0%
GATAAGACCTTGTTGATCGG+AGG + Chr5:5021247-5021266 None:intergenic 45.0%
GATGGAAGGGAGTGAAATTG+TGG - Chr5:5022084-5022103 MsG0580024442.01.T01:intron 45.0%
GGCATTCTACTATGAGGGAA+AGG - Chr5:5021582-5021601 MsG0580024442.01.T01:intron 45.0%
GTGCAGTCTTCGTAGTAGAA+AGG - Chr5:5022120-5022139 MsG0580024442.01.T01:intron 45.0%
TAATGCAGAGGGCAGTTCAA+TGG - Chr5:5022609-5022628 MsG0580024442.01.T01:intron 45.0%
TTCTACTACGAAGACTGCAC+CGG + Chr5:5022120-5022139 None:intergenic 45.0%
! AGTGGAGAATGTGGTCTTGA+AGG + Chr5:5021133-5021152 None:intergenic 45.0%
! CCACCGGCATTGAATTGAAT+TGG + Chr5:5021174-5021193 None:intergenic 45.0%
! CCTTAGGGGAAAGCACAAAT+AGG + Chr5:5021221-5021240 None:intergenic 45.0%
! GTGGAGAATGTGGTCTTGAA+GGG + Chr5:5021132-5021151 None:intergenic 45.0%
!! TATTAAATTAATATGATATA+TGG - Chr5:5023472-5023491 MsG0580024442.01.T01:intron 5.0%
!!! TTATATAATTTTTTGAAATA+TGG - Chr5:5021971-5021990 MsG0580024442.01.T01:intron 5.0%
AAGACCTTGTTGATCGGAGG+TGG + Chr5:5021244-5021263 None:intergenic 50.0%
AAGGGGCCATGTCCTAATTG+TGG - Chr5:5023308-5023327 MsG0580024442.01.T01:intron 50.0%
AGGCAATGACTAACGTGTGG+AGG + Chr5:5020950-5020969 None:intergenic 50.0%
AGGGAGTGAAATTGTGGCAG+AGG - Chr5:5022090-5022109 MsG0580024442.01.T01:intron 50.0%
ATGGTGTGTGTTGTGCGCAA+CGG - Chr5:5021990-5022009 MsG0580024442.01.T01:intron 50.0%
CCGGCAACTGTGATTGCATT+AGG - Chr5:5022438-5022457 MsG0580024442.01.T01:intron 50.0%
GCATCAATGTTCCACAGCTG+AGG + Chr5:5023528-5023547 None:intergenic 50.0%
GGCAATGACTAACGTGTGGA+GGG + Chr5:5020949-5020968 None:intergenic 50.0%
GGGAGTGAAATTGTGGCAGA+GGG - Chr5:5022091-5022110 MsG0580024442.01.T01:intron 50.0%
GTCGATAGTAGGGTGAGTGA+AGG - Chr5:5022831-5022850 MsG0580024442.01.T01:intron 50.0%
TCAACCTTGCCAGCTGAAGA+GGG + Chr5:5021373-5021392 None:intergenic 50.0%
TCTACTACGAAGACTGCACC+GGG + Chr5:5022119-5022138 None:intergenic 50.0%
! GGGAAAGCACAAATAGGCCT+CGG + Chr5:5021215-5021234 None:intergenic 50.0%
!! CTCTCACTCTGGAACACCAT+TGG - Chr5:5023900-5023919 MsG0580024442.01.T01:five_prime_UTR 50.0%
AAATTGTGGCAGAGGGTCCC+CGG - Chr5:5022098-5022117 MsG0580024442.01.T01:intron 55.0%
AAGGCCACCTCCGATCAACA+AGG - Chr5:5021237-5021256 MsG0580024442.01.T01:intron 55.0%
CAACCTTGCCAGCTGAAGAG+GGG + Chr5:5021372-5021391 None:intergenic 55.0%
CACAAATAGGCCTCGGCGAA+GGG + Chr5:5021208-5021227 None:intergenic 55.0%
CAGTTGCCGGGACTTTCAGT+AGG + Chr5:5022428-5022447 None:intergenic 55.0%
CTACTACGAAGACTGCACCG+GGG + Chr5:5022118-5022137 None:intergenic 55.0%
CTCAACCTTGCCAGCTGAAG+AGG + Chr5:5021374-5021393 None:intergenic 55.0%
CTCTTCAGCTGGCAAGGTTG+AGG - Chr5:5021372-5021391 MsG0580024442.01.T01:three_prime_UTR 55.0%
GACTAACGTGTGGAGGGACT+TGG + Chr5:5020943-5020962 None:intergenic 55.0%
GCAGAGGGCAGTTCAATGGT+TGG - Chr5:5022613-5022632 MsG0580024442.01.T01:intron 55.0%
TGGTGTGTGTTGTGCGCAAC+GGG - Chr5:5021991-5022010 MsG0580024442.01.T01:intron 55.0%
TGTTGATCGGAGGTGGCCTT+AGG + Chr5:5021237-5021256 None:intergenic 55.0%
TGTTTCCTCCCCTCTTCAGC+TGG - Chr5:5021361-5021380 MsG0580024442.01.T01:three_prime_UTR 55.0%
! GTTGATCGGAGGTGGCCTTA+GGG + Chr5:5021236-5021255 None:intergenic 55.0%
! TTGATCGGAGGTGGCCTTAG+GGG + Chr5:5021235-5021254 None:intergenic 55.0%
GCACAAATAGGCCTCGGCGA+AGG + Chr5:5021209-5021228 None:intergenic 60.0%
GGCGCTCCTACTGAAAGTCC+CGG - Chr5:5022419-5022438 MsG0580024442.01.T01:intron 60.0%
AAGGGATGAGTGGCGGCCAC+CGG + Chr5:5021190-5021209 None:intergenic 65.0%
CCTCCCCTCTTCAGCTGGCA+AGG - Chr5:5021366-5021385 MsG0580024442.01.T01:three_prime_UTR 65.0%
CCTTGCCAGCTGAAGAGGGG+AGG + Chr5:5021369-5021388 None:intergenic 65.0%
CTCGGCGAAGGGATGAGTGG+CGG + Chr5:5021197-5021216 None:intergenic 65.0%
CGCCACTCATCCCTTCGCCG+AGG - Chr5:5021195-5021214 MsG0580024442.01.T01:intron 70.0%
GGCCTCGGCGAAGGGATGAG+TGG + Chr5:5021200-5021219 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr5 gene 5020873 5024137 5020873 ID=MsG0580024442.01;Name=MsG0580024442.01
Chr5 mRNA 5020873 5024137 5020873 ID=MsG0580024442.01.T01;Parent=MsG0580024442.01;Name=MsG0580024442.01.T01;_AED=0.35;_eAED=0.39;_QI=529|0.9|0.90|1|0.7|0.72|11|390|250
Chr5 exon 5020873 5021169 5020873 ID=MsG0580024442.01.T01:exon:19018;Parent=MsG0580024442.01.T01
Chr5 exon 5021317 5021479 5021317 ID=MsG0580024442.01.T01:exon:19017;Parent=MsG0580024442.01.T01
Chr5 five_prime_UTR 5023752 5024137 5023752 ID=MsG0580024442.01.T01:five_prime_utr;Parent=MsG0580024442.01.T01
Chr5 five_prime_UTR 5023515 5023630 5023515 ID=MsG0580024442.01.T01:five_prime_utr;Parent=MsG0580024442.01.T01
Chr5 five_prime_UTR 5023401 5023427 5023401 ID=MsG0580024442.01.T01:five_prime_utr;Parent=MsG0580024442.01.T01
Chr5 CDS 5023331 5023400 5023331 ID=MsG0580024442.01.T01:cds;Parent=MsG0580024442.01.T01
Chr5 CDS 5023016 5023233 5023016 ID=MsG0580024442.01.T01:cds;Parent=MsG0580024442.01.T01
Chr5 CDS 5022869 5022925 5022869 ID=MsG0580024442.01.T01:cds;Parent=MsG0580024442.01.T01
Chr5 CDS 5022547 5022623 5022547 ID=MsG0580024442.01.T01:cds;Parent=MsG0580024442.01.T01
Chr5 CDS 5022005 5022056 5022005 ID=MsG0580024442.01.T01:cds;Parent=MsG0580024442.01.T01
Chr5 CDS 5021777 5021887 5021777 ID=MsG0580024442.01.T01:cds;Parent=MsG0580024442.01.T01
Chr5 CDS 5021602 5021699 5021602 ID=MsG0580024442.01.T01:cds;Parent=MsG0580024442.01.T01
Chr5 CDS 5021410 5021479 5021410 ID=MsG0580024442.01.T01:cds;Parent=MsG0580024442.01.T01
Chr5 three_prime_UTR 5021317 5021409 5021317 ID=MsG0580024442.01.T01:three_prime_utr;Parent=MsG0580024442.01.T01
Chr5 three_prime_UTR 5020873 5021169 5020873 ID=MsG0580024442.01.T01:three_prime_utr;Parent=MsG0580024442.01.T01
Chr5 mRNA 5021180 5024137 5021180 ID=MsG0580024442.01.T02;Parent=MsG0580024442.01;Name=MsG0580024442.01.T02;_AED=0.36;_eAED=0.41;_QI=529|0.88|0.9|1|0.77|0.9|10|230|250
Chr5 exon 5021180 5021479 5021180 ID=MsG0580024442.01.T02:exon:19019;Parent=MsG0580024442.01.T02
Chr5 five_prime_UTR 5023752 5024137 5023752 ID=MsG0580024442.01.T02:five_prime_utr;Parent=MsG0580024442.01.T02
Chr5 five_prime_UTR 5023515 5023630 5023515 ID=MsG0580024442.01.T02:five_prime_utr;Parent=MsG0580024442.01.T02
Chr5 five_prime_UTR 5023401 5023427 5023401 ID=MsG0580024442.01.T02:five_prime_utr;Parent=MsG0580024442.01.T02
Chr5 CDS 5023331 5023400 5023331 ID=MsG0580024442.01.T02:cds;Parent=MsG0580024442.01.T02
Chr5 CDS 5023016 5023233 5023016 ID=MsG0580024442.01.T02:cds;Parent=MsG0580024442.01.T02
Chr5 CDS 5022869 5022925 5022869 ID=MsG0580024442.01.T02:cds;Parent=MsG0580024442.01.T02
Chr5 CDS 5022547 5022623 5022547 ID=MsG0580024442.01.T02:cds;Parent=MsG0580024442.01.T02
Chr5 CDS 5022005 5022056 5022005 ID=MsG0580024442.01.T02:cds;Parent=MsG0580024442.01.T02
Chr5 CDS 5021777 5021887 5021777 ID=MsG0580024442.01.T02:cds;Parent=MsG0580024442.01.T02
Chr5 CDS 5021602 5021699 5021602 ID=MsG0580024442.01.T02:cds;Parent=MsG0580024442.01.T02
Chr5 CDS 5021410 5021479 5021410 ID=MsG0580024442.01.T02:cds;Parent=MsG0580024442.01.T02
Chr5 three_prime_UTR 5021180 5021409 5021180 ID=MsG0580024442.01.T02:three_prime_utr;Parent=MsG0580024442.01.T02
Gene Sequence

>MsG0580024442.01.T02

ATGTCAAATGAGGAATTTGATAATCTCAAAGAAGAACTCATGTGGGAAGGAAGCAGCGTTGTAATGCTAAGTTCTTCTGAGCAAAAATTTCTGGAAGCATCTATTGCTTATGTGTCTGGAAAACCAATCATGAGTGATAAAGAGTTTGATGAATTAAAACTGAAGCTAAAGGTTGATATTTTCATTTCATGGTGTGATTGTGATTTGATTAGAATATCTAATAAGAGCTTCATCGGTCACGCAAAATCTAAAAATTTACTAACTTTATATAATTTTTTGAAATATGGTATGGAAGGGAGTGAAATTGTGGCAGAGGGTCCCCGGTGCAGTCTTCGTAGTAGAAAGGTTTACAGTGATCTAACTGTTGACTATTTAAAGGCGCTCCTACTGAAAGTCCCGGCAACTGTGATTGCATTAGGATTGTTCTTCTTCCTTGATGATGTGACTGGATTTGAGATCAACTATCTGATAGCGATTCCAGAACCACTCAGTTTCATCTTGACTTGGTTTGCTGCTGTTCCTTTCATTCTATGGTTTGCTCAGTCAATTACAAATGCAATTATAAAAGATTTCTTGATTTTGAAGGGGCCATGTCCTAATTGTGGTACTGAAAACACCTCCTTCTTTGGGACTATATTGTCAATTTCAAGTGGAGATTCCACCAACAAAGTCAAATGTGAGAACTGTGGAACATTGATGCTATATGATTCAACTACAAGATTGATTACATTGCCAGAAGGAAGTACTGCATAA

>MsG0580024442.01.T01

ATGTCAAATGAGGAATTTGATAATCTCAAAGAAGAACTCATGTGGGAAGGAAGCAGCGTTGTAATGCTAAGTTCTTCTGAGCAAAAATTTCTGGAAGCATCTATTGCTTATGTGTCTGGAAAACCAATCATGAGTGATAAAGAGTTTGATGAATTAAAACTGAAGCTAAAGGTTGATATTTTCATTTCATGGTGTGATTGTGATTTGATTAGAATATCTAATAAGAGCTTCATCGGTCACGCAAAATCTAAAAATTTACTAACTTTATATAATTTTTTGAAATATGGTATGGAAGGGAGTGAAATTGTGGCAGAGGGTCCCCGGTGCAGTCTTCGTAGTAGAAAGGTTTACAGTGATCTAACTGTTGACTATTTAAAGGCGCTCCTACTGAAAGTCCCGGCAACTGTGATTGCATTAGGATTGTTCTTCTTCCTTGATGATGTGACTGGATTTGAGATCAACTATCTGATAGCGATTCCAGAACCACTCAGTTTCATCTTGACTTGGTTTGCTGCTGTTCCTTTCATTCTATGGTTTGCTCAGTCAATTACAAATGCAATTATAAAAGATTTCTTGATTTTGAAGGGGCCATGTCCTAATTGTGGTACTGAAAACACCTCCTTCTTTGGGACTATATTGTCAATTTCAAGTGGAGATTCCACCAACAAAGTCAAATGTGAGAACTGTGGAACATTGATGCTATATGATTCAACTACAAGATTGATTACATTGCCAGAAGGAAGTACTGCATAA

Protein sequence

>MsG0580024442.01.T02

MSNEEFDNLKEELMWEGSSVVMLSSSEQKFLEASIAYVSGKPIMSDKEFDELKLKLKVDIFISWCDCDLIRISNKSFIGHAKSKNLLTLYNFLKYGMEGSEIVAEGPRCSLRSRKVYSDLTVDYLKALLLKVPATVIALGLFFFLDDVTGFEINYLIAIPEPLSFILTWFAAVPFILWFAQSITNAIIKDFLILKGPCPNCGTENTSFFGTILSISSGDSTNKVKCENCGTLMLYDSTTRLITLPEGSTA*

>MsG0580024442.01.T01

MSNEEFDNLKEELMWEGSSVVMLSSSEQKFLEASIAYVSGKPIMSDKEFDELKLKLKVDIFISWCDCDLIRISNKSFIGHAKSKNLLTLYNFLKYGMEGSEIVAEGPRCSLRSRKVYSDLTVDYLKALLLKVPATVIALGLFFFLDDVTGFEINYLIAIPEPLSFILTWFAAVPFILWFAQSITNAIIKDFLILKGPCPNCGTENTSFFGTILSISSGDSTNKVKCENCGTLMLYDSTTRLITLPEGSTA*