AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780036088.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780036088.01.T01 MTR_7g007370 69.883 342 60 3 1 299 1 342 1.40e-164 461
MsG0780036088.01.T01 MTR_7g007340 57.895 266 84 4 4 249 5 262 3.60e-90 273
MsG0780036088.01.T01 MTR_3g099830 49.643 280 105 4 1 249 1 275 5.37e-70 221
MsG0780036088.01.T01 MTR_2g007400 46.644 298 94 8 16 250 11 306 1.12e-63 206
MsG0780036088.01.T01 MTR_2g005990 42.953 298 109 5 12 249 1 297 3.80e-61 199
MsG0780036088.01.T01 MTR_2g007360 44.840 281 114 9 1 250 1 271 2.89e-58 191
MsG0780036088.01.T01 MTR_2g008320 41.472 299 116 8 5 249 44 337 4.22e-53 179
MsG0780036088.01.T01 MTR_2g008310 41.958 286 111 9 16 249 1 283 2.21e-51 174
MsG0780036088.01.T01 MTR_5g083890 38.361 305 121 6 12 249 1 305 3.79e-49 171
MsG0780036088.01.T01 MTR_1g107385 35.484 310 133 8 5 249 21 328 1.20e-45 159
MsG0780036088.01.T01 MTR_7g075820 35.294 306 130 7 12 250 1 305 6.13e-42 149
MsG0780036088.01.T01 MTR_2g007090 43.071 267 98 8 1 262 1 218 1.87e-41 145
MsG0780036088.01.T01 MTR_2g007450 32.239 335 146 8 3 256 2 336 6.68e-38 139
MsG0780036088.01.T01 MTR_5g073420 37.456 283 116 9 16 245 10 284 2.15e-35 131
MsG0780036088.01.T01 MTR_3g107100 36.271 295 130 10 11 250 5 296 2.44e-34 129
MsG0780036088.01.T01 MTR_2g007500 34.483 290 138 7 9 249 6 292 1.36e-30 117
MsG0780036088.01.T01 MTR_7g056287 32.404 287 128 8 17 247 3 279 1.00e-27 110
MsG0780036088.01.T01 MTR_7g056277 32.526 289 129 8 13 245 255 533 1.32e-27 112
MsG0780036088.01.T01 MTR_7g007080 33.673 294 131 11 15 250 2 289 1.84e-27 110
MsG0780036088.01.T01 MTR_7g033470 53.846 117 42 3 1 108 1 114 4.09e-27 103
MsG0780036088.01.T01 MTR_3g107160 32.765 293 138 9 13 249 6 295 7.37e-27 108
MsG0780036088.01.T01 MTR_1089s0010 32.979 282 132 9 14 243 5 281 2.14e-26 107
MsG0780036088.01.T01 MTR_1g041245 31.818 286 140 6 16 249 10 292 2.40e-26 107
MsG0780036088.01.T01 MTR_7g098570 33.445 299 142 8 1 245 2 297 2.62e-26 108
MsG0780036088.01.T01 MTR_1g053025 33.000 300 134 8 16 249 1 299 5.56e-26 106
MsG0780036088.01.T01 MTR_3g026920 32.673 303 133 10 16 248 18 319 2.17e-25 104
MsG0780036088.01.T01 MTR_3g108560 30.104 289 149 9 11 250 14 298 7.23e-25 102
MsG0780036088.01.T01 MTR_6g040270 32.857 280 131 10 19 245 10 285 1.61e-24 102
MsG0780036088.01.T01 MTR_3g108560 30.104 289 149 9 11 250 14 298 2.01e-24 102
MsG0780036088.01.T01 MTR_1g108800 35.827 254 120 10 16 240 7 246 3.13e-24 100
MsG0780036088.01.T01 MTR_6g022360 32.117 274 139 10 16 245 42 312 7.85e-24 100
MsG0780036088.01.T01 MTR_7g055943 31.944 288 133 11 16 245 39 321 1.74e-23 99.8
MsG0780036088.01.T01 MTR_7g083740 29.562 274 166 4 1 249 1 272 3.83e-23 98.2
MsG0780036088.01.T01 MTR_4g039440 32.056 287 134 10 16 245 33 315 7.04e-23 97.8
MsG0780036088.01.T01 MTR_7g026500 30.976 297 128 10 17 245 14 301 9.47e-23 97.4
MsG0780036088.01.T01 MTR_3g107120 31.494 308 135 11 9 247 1 301 1.16e-22 97.1
MsG0780036088.01.T01 MTR_5g058000 32.639 288 135 10 16 251 7 287 1.25e-22 96.7
MsG0780036088.01.T01 MTR_5g045170 29.180 305 151 8 2 249 4 300 1.07e-21 94.4
MsG0780036088.01.T01 MTR_7g056433 30.508 295 142 9 13 249 8 297 1.22e-21 94.4
MsG0780036088.01.T01 MTR_7g098510 31.673 281 141 6 15 245 16 295 1.29e-21 94.0
MsG0780036088.01.T01 MTR_5g073340 33.333 279 136 9 11 249 2 270 5.36e-21 91.3
MsG0780036088.01.T01 MTR_6g029350 53.271 107 47 3 145 249 2 107 6.73e-21 89.7
MsG0780036088.01.T01 MTR_7g098480 30.822 292 127 7 15 245 16 293 8.38e-21 92.4
MsG0780036088.01.T01 MTR_5g061680 30.961 281 119 10 16 245 10 266 1.01e-20 90.9
MsG0780036088.01.T01 MTR_1g108820 30.351 313 144 12 16 262 7 311 1.61e-20 90.5
MsG0780036088.01.T01 MTR_1g066830 31.724 290 131 11 16 243 7 291 1.65e-20 90.9
MsG0780036088.01.T01 MTR_4g098590 32.877 292 130 10 22 250 4 292 5.02e-20 89.4
MsG0780036088.01.T01 MTR_6g011460 31.690 284 136 11 16 245 45 324 7.46e-20 89.4
MsG0780036088.01.T01 MTR_1g085120 31.650 297 136 12 17 251 179 470 2.25e-19 88.2
MsG0780036088.01.T01 MTR_7g075800 29.141 326 137 13 12 250 1 319 3.70e-19 88.2
MsG0780036088.01.T01 MTR_3g071850 37.572 173 83 7 94 247 148 314 4.47e-19 87.8
MsG0780036088.01.T01 MTR_7g088260 31.579 285 131 12 17 245 91 367 1.33e-18 85.9
MsG0780036088.01.T01 MTR_5g045510 31.801 261 123 9 16 225 11 267 2.23e-18 84.7
MsG0780036088.01.T01 MTR_0009s0080 29.712 313 151 12 1 249 1 308 7.79e-18 83.6
MsG0780036088.01.T01 MTR_1g085120 31.186 295 136 12 17 249 167 456 9.96e-18 83.6
MsG0780036088.01.T01 MTR_1g085120 31.186 295 136 12 17 249 92 381 1.13e-17 83.2
MsG0780036088.01.T01 MTR_5g058100 35.088 171 92 7 95 251 131 296 1.53e-17 82.4
MsG0780036088.01.T01 MTR_5g073370 30.743 296 128 12 14 245 2 284 1.80e-17 82.4
MsG0780036088.01.T01 MTR_5g058350 35.227 176 88 4 16 170 7 177 2.51e-17 78.6
MsG0780036088.01.T01 MTR_6g045333 38.122 181 89 9 94 256 185 360 2.92e-17 82.0
MsG0780036088.01.T01 MTR_2g036470 31.271 291 141 10 24 256 21 310 3.01e-17 81.6
MsG0780036088.01.T01 MTR_5g007410 29.221 308 149 11 4 247 13 315 5.03e-17 81.3
MsG0780036088.01.T01 MTR_0492s0020 27.907 301 149 10 4 250 73 359 8.95e-17 80.5
MsG0780036088.01.T01 MTR_0543s0010 27.575 301 150 10 4 250 73 359 1.08e-16 80.5
MsG0780036088.01.T01 MTR_2g007550 28.873 284 148 7 1 257 1 257 1.36e-16 79.3
MsG0780036088.01.T01 MTR_3g108150 28.475 295 138 9 17 250 13 295 3.56e-15 75.5
MsG0780036088.01.T01 MTR_5g039450 27.018 285 157 9 12 250 1 280 8.61e-15 74.3
MsG0780036088.01.T01 MTR_6g022500 29.066 289 144 10 16 247 100 384 2.74e-14 73.2
MsG0780036088.01.T01 MTR_5g084070 28.443 334 140 11 12 250 8 337 2.16e-12 67.4
MsG0780036088.01.T01 MTR_8g014180 50.943 53 26 0 1 53 1 53 3.60e-12 60.8
MsG0780036088.01.T01 MTR_4g080610 27.037 270 155 9 12 250 7 265 1.72e-11 64.3
MsG0780036088.01.T01 MTR_4g024770 47.541 61 32 0 1 61 8 68 2.53e-11 58.9
MsG0780036088.01.T01 MTR_7g098590 59.184 49 20 0 13 61 14 62 8.25e-11 59.3
MsG0780036088.01.T01 MTR_1g095750 52.632 57 27 0 5 61 34 90 8.49e-11 59.7
MsG0780036088.01.T01 MTR_5g080710 51.852 54 26 0 8 61 24 77 9.22e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780036088.01.T01 AT3G52680 31.188 202 92 5 1 158 6 204 4.00e-16 78.2
MsG0780036088.01.T01 AT3G52680 31.188 202 92 5 1 158 6 204 1.43e-15 77.0
MsG0780036088.01.T01 AT5G53840 31.522 184 81 6 15 157 16 195 9.06e-14 71.6
MsG0780036088.01.T01 AT3G26922 33.333 162 83 6 17 158 14 170 2.79e-11 63.2
MsG0780036088.01.T01 AT2G04230 60.000 45 18 0 17 61 13 57 8.05e-11 62.8

Find 63 sgRNAs with CRISPR-Local

Find 121 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAGAGATGGAAGAATTTA+TGG 0.129058 7:-2296947 MsG0780036088.01.T01:CDS
TTCTCCCGAAACAAGGTATT+TGG 0.175110 7:+2296881 None:intergenic
AAGATAGTATTAGGAAATTC+AGG 0.207093 7:+2296816 None:intergenic
GCCTTCACCGTTGAAGTTTC+CGG 0.210797 7:+2297074 None:intergenic
GACATTGAGTTTCAACAATA+TGG 0.218981 7:-2296687 MsG0780036088.01.T01:CDS
TGGGTATGCTGCTCAGTTCT+TGG 0.235980 7:+2295523 None:intergenic
TCACTAGTAAAGATAGTATT+AGG 0.252859 7:+2296807 None:intergenic
GTAATCATTACATGGATAAT+TGG 0.265223 7:-2296851 MsG0780036088.01.T01:CDS
GTAACCAAATACCTTGTTTC+GGG 0.281231 7:-2296885 MsG0780036088.01.T01:CDS
TCAAACTCTTGACCTTTATC+AGG 0.293685 7:-2296280 MsG0780036088.01.T01:CDS
AAGGTATTTGGTTACCGATT+TGG 0.304905 7:+2296893 None:intergenic
CTTCCATCTCTTTGAAAGAA+TGG 0.322981 7:+2296956 None:intergenic
ATTCAATAATTTGACCCATT+TGG 0.345786 7:-2296358 MsG0780036088.01.T01:CDS
AGGTCAAGAGTTTGAAGCTT+GGG 0.375430 7:+2296288 None:intergenic
GGTAACCAAATACCTTGTTT+CGG 0.396105 7:-2296886 MsG0780036088.01.T01:CDS
TAATCATTACATGGATAATT+GGG 0.413409 7:-2296850 MsG0780036088.01.T01:CDS
GGAAGTCACAAAGGCTTGAT+TGG 0.414727 7:+2296977 None:intergenic
CTTGTTTCGGGAGAAGTTGT+AGG 0.414780 7:-2296873 MsG0780036088.01.T01:CDS
CTCAATGTCTTTCAGATGTA+GGG 0.418649 7:+2296701 None:intergenic
ACTCAATGTCTTTCAGATGT+AGG 0.422872 7:+2296700 None:intergenic
CTATGGAGGAGGAGGTAGAT+AGG 0.429012 7:-2297052 MsG0780036088.01.T01:CDS
CTTCCATTCTTTCAAAGAGA+TGG 0.429124 7:-2296959 MsG0780036088.01.T01:CDS
CGAATTCGTCGGAACCAAAT+CGG 0.432737 7:-2296907 MsG0780036088.01.T01:CDS
CAAGGTTTCACAGCATGCCT+TGG 0.437303 7:+2296581 None:intergenic
GAGTTTGAAGCTTGGGGCAA+TGG 0.438174 7:+2296295 None:intergenic
TTAAGAAACAAACCTGATAA+AGG 0.439287 7:+2296268 None:intergenic
AGTTGAAGATCTTCAAGAAC+TGG 0.448679 7:+2296636 None:intergenic
GACGATAGTTGAGCACCAAA+TGG 0.453476 7:+2296343 None:intergenic
GAGAAGAGAGAATGTGAACT+AGG 0.453837 7:+2297006 None:intergenic
GGGTCAAATTATTGAATGTA+GGG 0.484959 7:+2296364 None:intergenic
TGGGTCAAATTATTGAATGT+AGG 0.488788 7:+2296363 None:intergenic
CATACAGGTATGTTAAGAAA+AGG 0.489500 7:+2296214 None:intergenic
AACTTCAACGGTGAAGGCTA+TGG 0.505115 7:-2297069 MsG0780036088.01.T01:CDS
TGTCACTCTTCTTTATTCCA+AGG 0.506719 7:-2296598 MsG0780036088.01.T01:CDS
ATGTGAACTAGGATATCATT+TGG 0.508108 7:+2297017 None:intergenic
GTCACAAAGGCTTGATTGGT+GGG 0.510125 7:+2296981 None:intergenic
TGCTCTATTCAACTTTGTCA+AGG 0.515376 7:+2296563 None:intergenic
GATGAAAGCACTTTCAAATG+TGG 0.527964 7:-2296511 MsG0780036088.01.T01:CDS
ACGATAGTTGAGCACCAAAT+GGG 0.529891 7:+2296344 None:intergenic
TTTGAAGCTTGGGGCAATGG+TGG 0.532688 7:+2296298 None:intergenic
GTTCCGACGAATTCGAGAGC+TGG 0.533412 7:+2296915 None:intergenic
GCCGGAAACTTCAACGGTGA+AGG 0.541308 7:-2297075 MsG0780036088.01.T01:CDS
GGAATAAAGAAGAGTGACAT+AGG 0.547358 7:+2296602 None:intergenic
AGATAGTATTAGGAAATTCA+GGG 0.547861 7:+2296817 None:intergenic
AACGGTGAAGGCTATGGAGG+AGG 0.549192 7:-2297063 MsG0780036088.01.T01:CDS
AGTCACAAAGGCTTGATTGG+TGG 0.559712 7:+2296980 None:intergenic
AGATCTTGATTGTCTTCTAG+AGG 0.574157 7:-2296664 MsG0780036088.01.T01:CDS
GGTGAAGGCTATGGAGGAGG+AGG 0.577137 7:-2297060 MsG0780036088.01.T01:CDS
TCTACACATAAAACTATCCA+TGG 0.580390 7:-2296484 MsG0780036088.01.T01:intron
AAGGTCAAGAGTTTGAAGCT+TGG 0.581524 7:+2296287 None:intergenic
CTACAACTTCTCCCGAAACA+AGG 0.582754 7:+2296874 None:intergenic
GATCTTGATTGTCTTCTAGA+GGG 0.584103 7:-2296663 MsG0780036088.01.T01:CDS
GGTCAAGAGTTTGAAGCTTG+GGG 0.592283 7:+2296289 None:intergenic
TCGTAACAGAATGTCTCAGC+CGG 0.596698 7:-2297093 None:intergenic
ACTGAGCTTAAGAATAACAA+GGG 0.598793 7:+2296782 None:intergenic
GTCTCAGCCGGAAACTTCAA+CGG 0.598884 7:-2297081 MsG0780036088.01.T01:CDS
TGAAAGAATGGAAGTCACAA+AGG 0.599495 7:+2296968 None:intergenic
TACTGAGCTTAAGAATAACA+AGG 0.608401 7:+2296781 None:intergenic
AGTTGTAGGTAATCATTACA+TGG 0.610000 7:-2296859 MsG0780036088.01.T01:CDS
CAGGTATGTTAAGAAAAGGA+AGG 0.614030 7:+2296218 None:intergenic
TTCAACGGTGAAGGCTATGG+AGG 0.617971 7:-2297066 MsG0780036088.01.T01:CDS
GTTCCAGCTCTCGAATTCGT+CGG 0.629571 7:-2296918 MsG0780036088.01.T01:CDS
TTGGTGCTCAACTATCGTCA+CGG 0.660191 7:-2296339 MsG0780036088.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTGATTTTTTTTTTAATAT+AGG - Chr7:2296150-2296169 MsG0780036088.01.T01:intron 10.0%
!!! CTGATTTTTTTTTTAATATA+GGG - Chr7:2296151-2296170 MsG0780036088.01.T01:intron 10.0%
!! ATTAATGAGTATTTCAATAT+AGG - Chr7:2296914-2296933 MsG0780036088.01.T01:CDS 15.0%
!! AAAATTATTCTCAAGTTCAA+GGG - Chr7:2296629-2296648 MsG0780036088.01.T01:CDS 20.0%
!! AATATAAAATTAGTGCCTAT+TGG + Chr7:2296861-2296880 None:intergenic 20.0%
!! ATGTAAACTTTCAGTTTATT+CGG - Chr7:2296662-2296681 MsG0780036088.01.T01:CDS 20.0%
!! TAATCATTACATGGATAATT+GGG - Chr7:2295706-2295725 MsG0780036088.01.T01:intron 20.0%
!!! AAGCTCAGTAATATTTTTAT+GGG - Chr7:2295788-2295807 MsG0780036088.01.T01:intron 20.0%
!!! ATAGGCACTAATTTTATATT+TGG - Chr7:2296861-2296880 MsG0780036088.01.T01:CDS 20.0%
!!! TAAGCTCAGTAATATTTTTA+TGG - Chr7:2295787-2295806 MsG0780036088.01.T01:intron 20.0%
! AAGATAGTATTAGGAAATTC+AGG + Chr7:2295743-2295762 None:intergenic 25.0%
! AAGTTGTAAGGTTTAATACA+AGG + Chr7:2296476-2296495 None:intergenic 25.0%
! AGATAGTATTAGGAAATTCA+GGG + Chr7:2295742-2295761 None:intergenic 25.0%
! ATTCAATAATTTGACCCATT+TGG - Chr7:2296198-2296217 MsG0780036088.01.T01:intron 25.0%
! CAAAATAAAACGATACATAC+AGG + Chr7:2296360-2296379 None:intergenic 25.0%
! CAAATTTATGTTAAGCCAAT+AGG - Chr7:2296843-2296862 MsG0780036088.01.T01:CDS 25.0%
! GAAAATTATTCTCAAGTTCA+AGG - Chr7:2296628-2296647 MsG0780036088.01.T01:CDS 25.0%
! GTAATCATTACATGGATAAT+TGG - Chr7:2295705-2295724 MsG0780036088.01.T01:intron 25.0%
! TCACTAGTAAAGATAGTATT+AGG + Chr7:2295752-2295771 None:intergenic 25.0%
! TTAAGAAACAAACCTGATAA+AGG + Chr7:2296291-2296310 None:intergenic 25.0%
! TTTCAATATAGGCACAATAT+AGG - Chr7:2296925-2296944 MsG0780036088.01.T01:CDS 25.0%
!! AAGGAAGTTGAATCTTTTTA+TGG - Chr7:2297064-2297083 MsG0780036088.01.T01:CDS 25.0%
AAATCCAACAATTTCATGGT+TGG + Chr7:2296748-2296767 None:intergenic 30.0%
AACCAAATCCAACAATTTCA+TGG + Chr7:2296752-2296771 None:intergenic 30.0%
AACCATGAAATTGTTGGATT+TGG - Chr7:2296747-2296766 MsG0780036088.01.T01:CDS 30.0%
ACTGAGCTTAAGAATAACAA+GGG + Chr7:2295777-2295796 None:intergenic 30.0%
AGTTGTAGGTAATCATTACA+TGG - Chr7:2295697-2295716 MsG0780036088.01.T01:intron 30.0%
ATGTGAACTAGGATATCATT+TGG + Chr7:2295542-2295561 None:intergenic 30.0%
CAAAGAGATGGAAGAATTTA+TGG - Chr7:2295609-2295628 MsG0780036088.01.T01:intron 30.0%
CATACAGGTATGTTAAGAAA+AGG + Chr7:2296345-2296364 None:intergenic 30.0%
GACATTGAGTTTCAACAATA+TGG - Chr7:2295869-2295888 MsG0780036088.01.T01:intron 30.0%
GGGTCAAATTATTGAATGTA+GGG + Chr7:2296195-2296214 None:intergenic 30.0%
TACTGAGCTTAAGAATAACA+AGG + Chr7:2295778-2295797 None:intergenic 30.0%
TATTATTAACAGAAGAACCG+AGG - Chr7:2296384-2296403 MsG0780036088.01.T01:CDS 30.0%
TCATATGGTGATATATACCA+TGG + Chr7:2296092-2296111 None:intergenic 30.0%
TCTACACATAAAACTATCCA+TGG - Chr7:2296072-2296091 MsG0780036088.01.T01:intron 30.0%
TGGGTCAAATTATTGAATGT+AGG + Chr7:2296196-2296215 None:intergenic 30.0%
TTTCAATAGCATGCATCATA+TGG + Chr7:2296107-2296126 None:intergenic 30.0%
! TCAACTTCCTTCGTATTTTT+GGG + Chr7:2297055-2297074 None:intergenic 30.0%
! TTCAACTTCCTTCGTATTTT+TGG + Chr7:2297056-2297075 None:intergenic 30.0%
!! AGTAATATTTTTATGGGTGC+TGG - Chr7:2295794-2295813 MsG0780036088.01.T01:intron 30.0%
!! GTAATATTTTTATGGGTGCT+GGG - Chr7:2295795-2295814 MsG0780036088.01.T01:intron 30.0%
!! TTTTAGAAACTATGTCAGTC+GGG - Chr7:2296577-2296596 MsG0780036088.01.T01:CDS 30.0%
!!! GTTTTAGAAACTATGTCAGT+CGG - Chr7:2296576-2296595 MsG0780036088.01.T01:CDS 30.0%
AAGGTTTAATACAAGGCAAG+AGG + Chr7:2296469-2296488 None:intergenic 35.0%
ACCTTACAACTTGCATTATG+CGG - Chr7:2296484-2296503 MsG0780036088.01.T01:intron 35.0%
ACTCAATGTCTTTCAGATGT+AGG + Chr7:2295859-2295878 None:intergenic 35.0%
AGATCTTGATTGTCTTCTAG+AGG - Chr7:2295892-2295911 MsG0780036088.01.T01:intron 35.0%
AGGTTTAATACAAGGCAAGA+GGG + Chr7:2296468-2296487 None:intergenic 35.0%
AGTTGAAGATCTTCAAGAAC+TGG + Chr7:2295923-2295942 None:intergenic 35.0%
CAGGTATGTTAAGAAAAGGA+AGG + Chr7:2296341-2296360 None:intergenic 35.0%
CTCAATGTCTTTCAGATGTA+GGG + Chr7:2295858-2295877 None:intergenic 35.0%
CTTCCATTCTTTCAAAGAGA+TGG - Chr7:2295597-2295616 MsG0780036088.01.T01:intron 35.0%
GAAGTTATGGTCAAAAAGAC+TGG - Chr7:2296424-2296443 MsG0780036088.01.T01:intron 35.0%
GATCTTGATTGTCTTCTAGA+GGG - Chr7:2295893-2295912 MsG0780036088.01.T01:intron 35.0%
GGAATAAAGAAGAGTGACAT+AGG + Chr7:2295957-2295976 None:intergenic 35.0%
TCAAACTCTTGACCTTTATC+AGG - Chr7:2296276-2296295 MsG0780036088.01.T01:CDS 35.0%
TGAAAGAATGGAAGTCACAA+AGG + Chr7:2295591-2295610 None:intergenic 35.0%
TGAAAGTTTACATGTTGCAG+AGG + Chr7:2296655-2296674 None:intergenic 35.0%
TGCTCTATTCAACTTTGTCA+AGG + Chr7:2295996-2296015 None:intergenic 35.0%
TGTCACTCTTCTTTATTCCA+AGG - Chr7:2295958-2295977 MsG0780036088.01.T01:intron 35.0%
TTGCTAACAAAATGTGCTCA+CGG + Chr7:2296533-2296552 None:intergenic 35.0%
! AAGGTATTTGGTTACCGATT+TGG + Chr7:2295666-2295685 None:intergenic 35.0%
! CTTCCATCTCTTTGAAAGAA+TGG + Chr7:2295603-2295622 None:intergenic 35.0%
! GGTAACCAAATACCTTGTTT+CGG - Chr7:2295670-2295689 MsG0780036088.01.T01:intron 35.0%
! GTAACCAAATACCTTGTTTC+GGG - Chr7:2295671-2295690 MsG0780036088.01.T01:intron 35.0%
! GTTGAATCTTTTTATGGCAC+TGG - Chr7:2297070-2297089 MsG0780036088.01.T01:CDS 35.0%
! TAATGATTAAAGTGCCTGCT+TGG + Chr7:2296898-2296917 None:intergenic 35.0%
! TTTTATGAACTGTGTGCTGA+TGG - Chr7:2296773-2296792 MsG0780036088.01.T01:CDS 35.0%
!! GATGAAAGCACTTTCAAATG+TGG - Chr7:2296045-2296064 MsG0780036088.01.T01:intron 35.0%
!! TACACCTTTTGTTGTGTTAC+TGG - Chr7:2296964-2296983 MsG0780036088.01.T01:CDS 35.0%
AACGCCAGTAACACAACAAA+AGG + Chr7:2296971-2296990 None:intergenic 40.0%
ACGATAGTTGAGCACCAAAT+GGG + Chr7:2296215-2296234 None:intergenic 40.0%
AGCTCCAACCATGAAATTGT+TGG - Chr7:2296741-2296760 MsG0780036088.01.T01:CDS 40.0%
ATTAGGGAGGATCGAAGTTA+TGG - Chr7:2296411-2296430 MsG0780036088.01.T01:intron 40.0%
CAGCATACCCAAAAATACGA+AGG - Chr7:2297045-2297064 MsG0780036088.01.T01:CDS 40.0%
CCTTACAACTTGCATTATGC+GGG - Chr7:2296485-2296504 MsG0780036088.01.T01:CDS 40.0%
GAGAAGAGAGAATGTGAACT+AGG + Chr7:2295553-2295572 None:intergenic 40.0%
! AAGAGGGAACAGATTTTGGA+AGG + Chr7:2296452-2296471 None:intergenic 40.0%
! AAGGTCAAGAGTTTGAAGCT+TGG + Chr7:2296272-2296291 None:intergenic 40.0%
! AGGTCAAGAGTTTGAAGCTT+GGG + Chr7:2296271-2296290 None:intergenic 40.0%
! TTCTCCCGAAACAAGGTATT+TGG + Chr7:2295678-2295697 None:intergenic 40.0%
!! AGAGGGAACAGATTTTGGAA+GGG + Chr7:2296451-2296470 None:intergenic 40.0%
!! CTCAGTTCTTGGTTTTCTTC+GGG + Chr7:2297025-2297044 None:intergenic 40.0%
!! GCTCAGTTCTTGGTTTTCTT+CGG + Chr7:2297026-2297045 None:intergenic 40.0%
!! TCAGTTCTTGGTTTTCTTCG+GGG + Chr7:2297024-2297043 None:intergenic 40.0%
!!! AGATGTAGGGTTTTGAGTGA+GGG + Chr7:2295845-2295864 None:intergenic 40.0%
AACTTCAACGGTGAAGGCTA+TGG - Chr7:2295487-2295506 MsG0780036088.01.T01:CDS 45.0%
AGTCACAAAGGCTTGATTGG+TGG + Chr7:2295579-2295598 None:intergenic 45.0%
CCCGCATAATGCAAGTTGTA+AGG + Chr7:2296488-2296507 None:intergenic 45.0%
CGAATTCGTCGGAACCAAAT+CGG - Chr7:2295649-2295668 MsG0780036088.01.T01:intron 45.0%
CTACAACTTCTCCCGAAACA+AGG + Chr7:2295685-2295704 None:intergenic 45.0%
CTTGTTTCGGGAGAAGTTGT+AGG - Chr7:2295683-2295702 MsG0780036088.01.T01:intron 45.0%
GACGATAGTTGAGCACCAAA+TGG + Chr7:2296216-2296235 None:intergenic 45.0%
GGAAGTCACAAAGGCTTGAT+TGG + Chr7:2295582-2295601 None:intergenic 45.0%
GTCACAAAGGCTTGATTGGT+GGG + Chr7:2295578-2295597 None:intergenic 45.0%
TGGATTACTAGACACCAAGC+AGG - Chr7:2296881-2296900 MsG0780036088.01.T01:CDS 45.0%
! AGGCAAGAGGGAACAGATTT+TGG + Chr7:2296456-2296475 None:intergenic 45.0%
! GGTCAAGAGTTTGAAGCTTG+GGG + Chr7:2296270-2296289 None:intergenic 45.0%
! TTGGTGCTCAACTATCGTCA+CGG - Chr7:2296217-2296236 MsG0780036088.01.T01:CDS 45.0%
!! CAGTTCTTGGTTTTCTTCGG+GGG + Chr7:2297023-2297042 None:intergenic 45.0%
!!! CAGATGTAGGGTTTTGAGTG+AGG + Chr7:2295846-2295865 None:intergenic 45.0%
ACTTGCATTATGCGGGACGT+TGG - Chr7:2296492-2296511 MsG0780036088.01.T01:CDS 50.0%
AGAAGAACCGAGGCAGCATT+AGG - Chr7:2296394-2296413 MsG0780036088.01.T01:intron 50.0%
CAAGGTTTCACAGCATGCCT+TGG + Chr7:2295978-2295997 None:intergenic 50.0%
CTATGGAGGAGGAGGTAGAT+AGG - Chr7:2295504-2295523 MsG0780036088.01.T01:CDS 50.0%
GAAGAACCGAGGCAGCATTA+GGG - Chr7:2296395-2296414 MsG0780036088.01.T01:intron 50.0%
GCCTTCACCGTTGAAGTTTC+CGG + Chr7:2295485-2295504 None:intergenic 50.0%
GTCTCAGCCGGAAACTTCAA+CGG - Chr7:2295475-2295494 MsG0780036088.01.T01:CDS 50.0%
GTTCCAGCTCTCGAATTCGT+CGG - Chr7:2295638-2295657 MsG0780036088.01.T01:intron 50.0%
TGGGTATGCTGCTCAGTTCT+TGG + Chr7:2297036-2297055 None:intergenic 50.0%
TTCAACGGTGAAGGCTATGG+AGG - Chr7:2295490-2295509 MsG0780036088.01.T01:CDS 50.0%
! GAGTTTGAAGCTTGGGGCAA+TGG + Chr7:2296264-2296283 None:intergenic 50.0%
! TTTGAAGCTTGGGGCAATGG+TGG + Chr7:2296261-2296280 None:intergenic 50.0%
AACGGTGAAGGCTATGGAGG+AGG - Chr7:2295493-2295512 MsG0780036088.01.T01:CDS 55.0%
GATCCTCCCTAATGCTGCCT+CGG + Chr7:2296404-2296423 None:intergenic 55.0%
GCCGGAAACTTCAACGGTGA+AGG - Chr7:2295481-2295500 MsG0780036088.01.T01:CDS 55.0%
GTTCCGACGAATTCGAGAGC+TGG + Chr7:2295644-2295663 None:intergenic 55.0%
GAACCGAGGCAGCATTAGGG+AGG - Chr7:2296398-2296417 MsG0780036088.01.T01:intron 60.0%
GGTGAAGGCTATGGAGGAGG+AGG - Chr7:2295496-2295515 MsG0780036088.01.T01:CDS 60.0%
! CTATGTCAGTCGGGTGCTGC+TGG - Chr7:2296586-2296605 MsG0780036088.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 2295473 2297105 2295473 ID=MsG0780036088.01;Name=MsG0780036088.01
Chr7 mRNA 2295473 2297105 2295473 ID=MsG0780036088.01.T01;Parent=MsG0780036088.01;Name=MsG0780036088.01.T01;_AED=0.19;_eAED=0.19;_QI=0|0|0|1|0.5|0.33|3|0|299
Chr7 exon 2296485 2297105 2296485 ID=MsG0780036088.01.T01:exon:2349;Parent=MsG0780036088.01.T01
Chr7 exon 2296215 2296406 2296215 ID=MsG0780036088.01.T01:exon:2348;Parent=MsG0780036088.01.T01
Chr7 exon 2295473 2295559 2295473 ID=MsG0780036088.01.T01:exon:2347;Parent=MsG0780036088.01.T01
Chr7 CDS 2296485 2297105 2296485 ID=MsG0780036088.01.T01:cds;Parent=MsG0780036088.01.T01
Chr7 CDS 2296215 2296406 2296215 ID=MsG0780036088.01.T01:cds;Parent=MsG0780036088.01.T01
Chr7 CDS 2295473 2295559 2295473 ID=MsG0780036088.01.T01:cds;Parent=MsG0780036088.01.T01
Gene Sequence

>MsG0780036088.01.T01

ATGTCTCAGCCGGAAACTTCAACGGTGAAGGCTATGGAGGAGGAGGTAGATAGGATCAGCATTTTACCAAATGATATCCTAGTTCACATTCTCTCTTCTCTTCCCACCAATCAAGCCTTTGTGACTTCCATTCTTTCAAAGAGATGGAAGAATTTATGGTGTCTCGTTCCAGCTCTCGAATTCGTCGGAACCAAATCGGTAACCAAATACCTTGTTTCGGGAGAAGTTGTAGGTAATCATTACATGGATAATTGGGAAAGAATATACCCTGAATTTCCTAATACTATCTTTACTAGTGAAACCCTTGTTATTCTTAAGCTCAGTAATATTTTTATGGGTGCTGGGTTTTGTAATTATCTCATAAGATTACCCTCACTCAAAACCCTACATCTGAAAGACATTGAGTTTCAACAATATGGAGATCTTGATTGTCTTCTAGAGGGATGTCCAGTTCTTGAAGATCTTCAACTATATGTTATATCCTATGTCACTCTTCTTTATTCCAAGGCATGCTGTGAAACCTTGACAAAGTTGAATAGAGCAGATATTATTCAATGTGAATGCTGTGTTCTGATGAAAGCACTTTCAAATGTGGAGTTTCTACACATAAAACTATCCATGGGTTATCTTTATTACGTCTTCCCTACATTCAATAATTTGACCCATTTGGTGCTCAACTATCGTCACGGTATAGATCTACAGATGCTCCACCATTGCCCCAAGCTTCAAACTCTTGACCTTTATCAGGTTTGTTTCTTAAATTTAACAATTATATTTCTTTTTTTTTCCTTCCTTTTCTTAACATACCTGTATACCCCCGAAGAAAACCAAGAACTGAGCAGCATACCCAAAAATACGAAGGAAGTTGAATCTTTTTATGGCACTGGCATAACCCTGTAG
Protein sequence

>MsG0780036088.01.T01

MSQPETSTVKAMEEEVDRISILPNDILVHILSSLPTNQAFVTSILSKRWKNLWCLVPALEFVGTKSVTKYLVSGEVVGNHYMDNWERIYPEFPNTIFTSETLVILKLSNIFMGAGFCNYLIRLPSLKTLHLKDIEFQQYGDLDCLLEGCPVLEDLQLYVISYVTLLYSKACCETLTKLNRADIIQCECCVLMKALSNVEFLHIKLSMGYLYYVFPTFNNLTHLVLNYRHGIDLQMLHHCPKLQTLDLYQVCFLNLTIIFLFFSFLFLTYLYTPEENQELSSIPKNTKEVESFYGTGITL*