Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780037181.01.T01 | XP_004490493.1 | 53.996 | 463 | 169 | 4 | 1 | 461 | 1 | 421 | 2.66E-157 | 469 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780037181.01.T01 | Q9C7X8 | 33.488 | 430 | 268 | 8 | 2 | 423 | 9 | 428 | 1.44E-62 | 213 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780037181.01.T01 | A0A1S2XMC6 | 53.996 | 463 | 169 | 4 | 1 | 461 | 1 | 421 | 1.27e-157 | 469 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780037181.01.T01 | MTR_5g080150 | 53.735 | 415 | 152 | 6 | 1 | 413 | 1 | 377 | 2.41e-137 | 400 |
| MsG0780037181.01.T01 | MTR_2g048140 | 39.744 | 468 | 264 | 8 | 4 | 470 | 5 | 455 | 1.61e-90 | 283 |
| MsG0780037181.01.T01 | MTR_1g090907 | 39.530 | 468 | 264 | 9 | 4 | 470 | 5 | 454 | 1.17e-89 | 281 |
| MsG0780037181.01.T01 | MTR_7g029260 | 88.889 | 135 | 15 | 0 | 310 | 444 | 34 | 168 | 1.36e-80 | 249 |
| MsG0780037181.01.T01 | MTR_3g448340 | 35.185 | 486 | 269 | 12 | 1 | 468 | 1 | 458 | 3.49e-77 | 249 |
| MsG0780037181.01.T01 | MTR_1g090903 | 34.615 | 442 | 226 | 10 | 31 | 470 | 30 | 410 | 4.43e-67 | 221 |
| MsG0780037181.01.T01 | MTR_3g049530 | 31.526 | 498 | 233 | 14 | 1 | 471 | 1 | 417 | 6.52e-51 | 178 |
| MsG0780037181.01.T01 | MTR_5g080160 | 52.475 | 101 | 46 | 1 | 370 | 470 | 61 | 159 | 5.41e-27 | 106 |
| MsG0780037181.01.T01 | MTR_5g080160 | 64.912 | 57 | 19 | 1 | 1 | 56 | 1 | 57 | 2.20e-14 | 71.2 |
| MsG0780037181.01.T01 | MTR_5g066890 | 60.227 | 88 | 33 | 1 | 325 | 412 | 1 | 86 | 9.12e-26 | 100 |
| MsG0780037181.01.T01 | MTR_5g080110 | 62.687 | 67 | 25 | 0 | 1 | 67 | 1 | 67 | 1.09e-20 | 85.9 |
| MsG0780037181.01.T01 | MTR_4g045900 | 23.859 | 482 | 284 | 18 | 5 | 429 | 25 | 480 | 5.91e-17 | 83.6 |
| MsG0780037181.01.T01 | MTR_5g066900 | 48.193 | 83 | 28 | 1 | 18 | 100 | 18 | 85 | 3.52e-15 | 71.2 |
| MsG0780037181.01.T01 | MTR_2g047858 | 22.633 | 433 | 281 | 13 | 6 | 429 | 115 | 502 | 7.58e-14 | 73.9 |
| MsG0780037181.01.T01 | MTR_5g080120 | 75.000 | 40 | 10 | 0 | 325 | 364 | 1 | 40 | 5.28e-13 | 63.9 |
| MsG0780037181.01.T01 | MTR_1g071060 | 40.000 | 90 | 53 | 1 | 38 | 127 | 7 | 95 | 2.54e-12 | 63.2 |
| MsG0780037181.01.T01 | MTR_5g080090 | 46.575 | 73 | 29 | 2 | 339 | 410 | 39 | 102 | 1.23e-11 | 62.0 |
| MsG0780037181.01.T01 | MTR_2g091145 | 22.532 | 466 | 279 | 17 | 5 | 449 | 20 | 424 | 6.97e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780037181.01.T01 | AT1G56400 | 33.488 | 430 | 268 | 8 | 2 | 423 | 9 | 428 | 1.47e-63 | 213 |
| MsG0780037181.01.T01 | AT5G54820 | 30.342 | 468 | 293 | 12 | 2 | 452 | 3 | 454 | 2.71e-53 | 186 |
| MsG0780037181.01.T01 | AT3G29830 | 33.108 | 444 | 261 | 14 | 6 | 432 | 8 | 432 | 4.79e-53 | 185 |
| MsG0780037181.01.T01 | AT3G29830 | 32.883 | 444 | 263 | 14 | 6 | 432 | 8 | 433 | 5.31e-52 | 182 |
| MsG0780037181.01.T01 | AT1G56400 | 31.702 | 429 | 234 | 9 | 3 | 423 | 10 | 387 | 8.51e-52 | 181 |
| MsG0780037181.01.T01 | AT3G62230 | 29.478 | 441 | 297 | 8 | 2 | 437 | 4 | 435 | 1.42e-49 | 176 |
| MsG0780037181.01.T01 | AT2G17305 | 31.868 | 182 | 116 | 4 | 291 | 471 | 95 | 269 | 6.82e-24 | 101 |
| MsG0780037181.01.T01 | AT3G58860 | 23.448 | 435 | 291 | 12 | 5 | 429 | 6 | 408 | 6.97e-19 | 89.4 |
| MsG0780037181.01.T01 | AT1G61330 | 23.608 | 449 | 274 | 16 | 11 | 434 | 15 | 419 | 6.90e-17 | 83.2 |
| MsG0780037181.01.T01 | AT4G13960 | 24.280 | 486 | 302 | 18 | 5 | 464 | 1 | 446 | 2.72e-15 | 78.6 |
| MsG0780037181.01.T01 | AT4G13960 | 24.280 | 486 | 302 | 18 | 5 | 464 | 1 | 446 | 2.72e-15 | 78.6 |
| MsG0780037181.01.T01 | AT4G13985 | 24.449 | 454 | 280 | 15 | 2 | 431 | 15 | 429 | 3.80e-15 | 77.8 |
| MsG0780037181.01.T01 | AT3G58880 | 24.083 | 436 | 276 | 15 | 5 | 417 | 2 | 405 | 4.30e-15 | 77.8 |
| MsG0780037181.01.T01 | AT5G22610 | 22.785 | 474 | 303 | 14 | 6 | 471 | 18 | 436 | 5.99e-15 | 77.4 |
| MsG0780037181.01.T01 | AT4G03220 | 23.485 | 528 | 295 | 23 | 3 | 471 | 21 | 498 | 1.48e-14 | 76.3 |
| MsG0780037181.01.T01 | AT3G58900 | 23.490 | 447 | 296 | 14 | 5 | 429 | 1 | 423 | 2.14e-14 | 75.5 |
| MsG0780037181.01.T01 | AT1G69630 | 22.718 | 493 | 295 | 18 | 5 | 470 | 17 | 450 | 4.47e-14 | 74.7 |
| MsG0780037181.01.T01 | AT3G59000 | 27.519 | 258 | 161 | 7 | 5 | 242 | 1 | 252 | 5.40e-14 | 73.6 |
| MsG0780037181.01.T01 | AT1G16930 | 22.495 | 489 | 300 | 16 | 4 | 468 | 13 | 446 | 8.08e-14 | 73.9 |
| MsG0780037181.01.T01 | AT1G16930 | 22.495 | 489 | 300 | 16 | 4 | 468 | 13 | 446 | 8.08e-14 | 73.9 |
| MsG0780037181.01.T01 | AT1G16930 | 22.495 | 489 | 300 | 16 | 4 | 468 | 13 | 446 | 8.08e-14 | 73.9 |
| MsG0780037181.01.T01 | AT5G22610 | 22.088 | 498 | 307 | 15 | 6 | 471 | 18 | 466 | 3.11e-13 | 72.0 |
| MsG0780037181.01.T01 | AT3G59000 | 32.308 | 130 | 87 | 1 | 5 | 134 | 1 | 129 | 3.53e-13 | 72.0 |
| MsG0780037181.01.T01 | AT5G44980 | 22.717 | 449 | 273 | 15 | 6 | 429 | 4 | 403 | 4.05e-13 | 71.6 |
| MsG0780037181.01.T01 | AT5G44980 | 22.717 | 449 | 273 | 15 | 6 | 429 | 4 | 403 | 4.05e-13 | 71.6 |
| MsG0780037181.01.T01 | AT1G52650 | 23.465 | 456 | 288 | 16 | 5 | 434 | 1 | 421 | 7.73e-13 | 70.9 |
| MsG0780037181.01.T01 | AT1G66310 | 22.200 | 491 | 290 | 18 | 5 | 470 | 18 | 441 | 1.02e-12 | 70.5 |
| MsG0780037181.01.T01 | AT1G32375 | 24.153 | 443 | 279 | 14 | 5 | 436 | 1 | 397 | 1.51e-12 | 69.7 |
| MsG0780037181.01.T01 | AT1G32375 | 24.153 | 443 | 279 | 14 | 5 | 436 | 1 | 397 | 1.51e-12 | 69.7 |
| MsG0780037181.01.T01 | AT1G78760 | 22.917 | 480 | 304 | 18 | 6 | 471 | 16 | 443 | 2.14e-12 | 69.3 |
| MsG0780037181.01.T01 | AT1G66300 | 21.042 | 480 | 299 | 17 | 2 | 452 | 25 | 453 | 2.64e-12 | 68.9 |
| MsG0780037181.01.T01 | AT5G38390 | 24.131 | 489 | 295 | 17 | 5 | 458 | 1 | 448 | 7.85e-12 | 67.8 |
| MsG0780037181.01.T01 | AT3G42770 | 21.776 | 473 | 305 | 16 | 11 | 470 | 4 | 424 | 9.48e-12 | 67.4 |
| MsG0780037181.01.T01 | AT5G22730 | 21.660 | 494 | 302 | 16 | 6 | 470 | 28 | 465 | 1.11e-11 | 67.0 |
| MsG0780037181.01.T01 | AT5G22730 | 21.660 | 494 | 302 | 16 | 6 | 470 | 28 | 465 | 1.11e-11 | 67.0 |
| MsG0780037181.01.T01 | AT2G04230 | 25.397 | 441 | 273 | 20 | 2 | 428 | 9 | 407 | 1.26e-11 | 67.0 |
| MsG0780037181.01.T01 | AT5G22670 | 23.583 | 441 | 283 | 14 | 6 | 431 | 11 | 412 | 3.51e-11 | 65.5 |
| MsG0780037181.01.T01 | AT3G52680 | 23.385 | 449 | 285 | 18 | 6 | 444 | 21 | 420 | 5.00e-11 | 65.1 |
Find 59 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATAGAGATTAATGGCTTTA+AGG | 0.132329 | 7:-21313018 | MsG0780037181.01.T01:CDS |
| TTTGCACAAGTTTGAGTTTA+TGG | 0.132794 | 7:-21313683 | MsG0780037181.01.T01:CDS |
| CCTATTTATGTTTATGACTA+TGG | 0.243649 | 7:-21314517 | MsG0780037181.01.T01:CDS |
| CTTTGAGCATCAACAATTTC+AGG | 0.243731 | 7:+21314769 | None:intergenic |
| TTCAAATTAGTTGAAGCTTT+TGG | 0.244970 | 7:+21312834 | None:intergenic |
| ATGACCTGCTTAAACATTTC+AGG | 0.245189 | 7:+21314661 | None:intergenic |
| TGTTGATGAAATACATCTTT+TGG | 0.268390 | 7:-21313605 | MsG0780037181.01.T01:intron |
| TTCCCTCAAAGAAATATCTT+TGG | 0.270717 | 7:-21314431 | MsG0780037181.01.T01:CDS |
| GAGAAATGGAGTTAAGTATT+TGG | 0.273380 | 7:-21314614 | MsG0780037181.01.T01:CDS |
| CCATAGTCATAAACATAAAT+AGG | 0.286870 | 7:+21314517 | None:intergenic |
| AAAAGACAAAGGGGAGAAAA+TGG | 0.291797 | 7:+21314900 | None:intergenic |
| AGTGAAGCTATGTGCTATTA+AGG | 0.312329 | 7:-21314398 | MsG0780037181.01.T01:CDS |
| ATGTTATTCCAGAGAGATAT+TGG | 0.322322 | 7:-21313088 | MsG0780037181.01.T01:CDS |
| ATAGAGATTAATGGCTTTAA+GGG | 0.336070 | 7:-21313017 | MsG0780037181.01.T01:CDS |
| CGTTTGCAGTTACTTGCTTC+AGG | 0.341208 | 7:-21314044 | MsG0780037181.01.T01:intron |
| CTAAAGGAGATAGAGATTAA+TGG | 0.344050 | 7:-21313026 | MsG0780037181.01.T01:CDS |
| ATGGTTGATAACAATGAATT+AGG | 0.345686 | 7:+21314919 | None:intergenic |
| TTGCACAAGTTTGAGTTTAT+GGG | 0.353651 | 7:-21313682 | MsG0780037181.01.T01:CDS |
| TCTGGAATAACATTGTATAT+TGG | 0.359029 | 7:+21313098 | None:intergenic |
| CCATGGGAGTAAACATTGAT+AGG | 0.362936 | 7:-21314954 | MsG0780037181.01.T01:CDS |
| TCCCTCAAAGAAATATCTTT+GGG | 0.372400 | 7:-21314430 | MsG0780037181.01.T01:CDS |
| TCACCCTCCACATCATCTTT+AGG | 0.373832 | 7:+21312918 | None:intergenic |
| TTCCCTTGAGCATGGATGTC+AGG | 0.403881 | 7:-21314134 | MsG0780037181.01.T01:CDS |
| ACCCAAAGATATTTCTTTGA+GGG | 0.417663 | 7:+21314429 | None:intergenic |
| CCACTTCTTTAAAAGACAAA+GGG | 0.422930 | 7:+21314890 | None:intergenic |
| AGTTCATTGAACTCTATGTT+TGG | 0.432595 | 7:+21314817 | None:intergenic |
| GTTTGAGTTTGTTTAAGTGC+TGG | 0.444803 | 7:-21314345 | MsG0780037181.01.T01:CDS |
| ATGTGCTATTAAGGCACTAT+TGG | 0.446523 | 7:-21314389 | MsG0780037181.01.T01:CDS |
| AAACTATCTTTGATCCGAGT+TGG | 0.455902 | 7:+21314574 | None:intergenic |
| ATTGGCCAATTGTGAAAAGT+TGG | 0.461528 | 7:-21314371 | MsG0780037181.01.T01:CDS |
| ATTGTGAGACGTTCTAAGTC+GGG | 0.463898 | 7:+21313634 | None:intergenic |
| GGGCCTTTCCAATATCTCTC+TGG | 0.473294 | 7:+21313080 | None:intergenic |
| GTTGCGTCAGCTGTGAGAAA+TGG | 0.489194 | 7:-21314628 | MsG0780037181.01.T01:CDS |
| ATGTCTGAAGTTTAATCTAA+AGG | 0.490568 | 7:-21313042 | MsG0780037181.01.T01:CDS |
| TGATATTCAATCAACTGCAT+TGG | 0.494222 | 7:-21314176 | MsG0780037181.01.T01:CDS |
| AACCCAAAGATATTTCTTTG+AGG | 0.497703 | 7:+21314428 | None:intergenic |
| GCCACTTCTTTAAAAGACAA+AGG | 0.498718 | 7:+21314889 | None:intergenic |
| CCTATCAATGTTTACTCCCA+TGG | 0.499066 | 7:+21314954 | None:intergenic |
| AGTGCCTGAAATGTTTAAGC+AGG | 0.499692 | 7:-21314665 | MsG0780037181.01.T01:CDS |
| ATTAAGTACTTTCTTATGCG+TGG | 0.511283 | 7:-21312972 | MsG0780037181.01.T01:CDS |
| AAGTGCTGGAATTCAGATGC+TGG | 0.524277 | 7:-21314331 | MsG0780037181.01.T01:CDS |
| CTGAAGCAAGTAACTGCAAA+CGG | 0.538481 | 7:+21314045 | None:intergenic |
| GCGTGGGAAGGCCTTGAGAA+AGG | 0.551578 | 7:-21312955 | MsG0780037181.01.T01:CDS |
| TGACCTGACATCCATGCTCA+AGG | 0.552492 | 7:+21314131 | None:intergenic |
| AATTGTGAGACGTTCTAAGT+CGG | 0.554656 | 7:+21313633 | None:intergenic |
| ATTGATACTCACCTTTCTCA+AGG | 0.555139 | 7:+21312944 | None:intergenic |
| GTACTTTCTTATGCGTGGGA+AGG | 0.559959 | 7:-21312967 | MsG0780037181.01.T01:CDS |
| AGTTAATGCCCCAAATCTGA+AGG | 0.566076 | 7:-21314236 | MsG0780037181.01.T01:CDS |
| TTAAGTACTTTCTTATGCGT+GGG | 0.578371 | 7:-21312971 | MsG0780037181.01.T01:CDS |
| CAATTTACCTAAAGATGATG+TGG | 0.588419 | 7:-21312925 | MsG0780037181.01.T01:CDS |
| GACCTGACATCCATGCTCAA+GGG | 0.599854 | 7:+21314132 | None:intergenic |
| TTGATTTCACTCATCCAACT+CGG | 0.602313 | 7:-21314588 | MsG0780037181.01.T01:CDS |
| TAAAGATGATGTGGAGGGTG+AGG | 0.608888 | 7:-21312916 | MsG0780037181.01.T01:CDS |
| TTTACCTAAAGATGATGTGG+AGG | 0.623463 | 7:-21312922 | MsG0780037181.01.T01:CDS |
| CACTTCTTTAAAAGACAAAG+GGG | 0.637411 | 7:+21314891 | None:intergenic |
| TTGTGAGACGTTCTAAGTCG+GGG | 0.653118 | 7:+21313635 | None:intergenic |
| TTGGGTGAACATTAGCAAAG+TGG | 0.666162 | 7:-21314842 | MsG0780037181.01.T01:CDS |
| ATTCCAGAGAGATATTGGAA+AGG | 0.666168 | 7:-21313083 | MsG0780037181.01.T01:CDS |
| TTACCTAAAGATGATGTGGA+GGG | 0.672518 | 7:-21312921 | MsG0780037181.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAAATATTTATTAAAA+AGG | + | Chr7:21313889-21313908 | None:intergenic | 0.0% |
| !! | AAAAACTAATTTCATATATT+AGG | - | Chr7:21314391-21314410 | MsG0780037181.01.T01:CDS | 10.0% |
| !! | AAACAGAAAAATATTATTAA+AGG | + | Chr7:21313863-21313882 | None:intergenic | 10.0% |
| !! | AACAGAAAAATATTATTAAA+GGG | + | Chr7:21313862-21313881 | None:intergenic | 10.0% |
| !! | TAACTTAAAAATCATATAAA+GGG | + | Chr7:21314471-21314490 | None:intergenic | 10.0% |
| !! | AAATTAAGAAGAAGAAAAAA+AGG | + | Chr7:21313764-21313783 | None:intergenic | 15.0% |
| !! | CTAACTTAAAAATCATATAA+AGG | + | Chr7:21314472-21314491 | None:intergenic | 15.0% |
| !!! | CTTTATATGATTTTTAAGTT+AGG | - | Chr7:21314470-21314489 | MsG0780037181.01.T01:CDS | 15.0% |
| !!! | TATTTCTTTTGAAAATGATT+TGG | - | Chr7:21313923-21313942 | MsG0780037181.01.T01:intron | 15.0% |
| !! | AAATAAAAACCTTCAGATTT+GGG | + | Chr7:21313546-21313565 | None:intergenic | 20.0% |
| !! | TAAATAAAAACCTTCAGATT+TGG | + | Chr7:21313547-21313566 | None:intergenic | 20.0% |
| !! | TAGAGATTATTTGTTTCATA+CGG | - | Chr7:21314423-21314442 | MsG0780037181.01.T01:CDS | 20.0% |
| !! | TATGTATTTCCAGTAAAAAT+AGG | - | Chr7:21314493-21314512 | MsG0780037181.01.T01:CDS | 20.0% |
| !! | TCATAAGGCAAATAAATTAA+GGG | + | Chr7:21314593-21314612 | None:intergenic | 20.0% |
| !! | TTCATAAGGCAAATAAATTA+AGG | + | Chr7:21314594-21314613 | None:intergenic | 20.0% |
| !!! | ACATATATTCCTATTTTTAC+TGG | + | Chr7:21314505-21314524 | None:intergenic | 20.0% |
| !!! | GTTTTCTATTATTATATTGC+AGG | - | Chr7:21314641-21314660 | MsG0780037181.01.T01:CDS | 20.0% |
| !!! | TGAAGGTTTTTATTTATCAA+GGG | - | Chr7:21313551-21313570 | MsG0780037181.01.T01:intron | 20.0% |
| ! | AATAAAAACCTTCAGATTTG+GGG | + | Chr7:21313545-21313564 | None:intergenic | 25.0% |
| ! | CCATAGTCATAAACATAAAT+AGG | + | Chr7:21313256-21313275 | None:intergenic | 25.0% |
| ! | CCTATTTATGTTTATGACTA+TGG | - | Chr7:21313253-21313272 | MsG0780037181.01.T01:intron | 25.0% |
| ! | TTCTATTCTCTCCAAAAATT+GGG | - | Chr7:21312910-21312929 | MsG0780037181.01.T01:CDS | 25.0% |
| !! | AGACATTTGTAATCATTTTC+AGG | + | Chr7:21314714-21314733 | None:intergenic | 25.0% |
| !! | ATATTCTGGGTTGAAAAAAT+TGG | - | Chr7:21313480-21313499 | MsG0780037181.01.T01:intron | 25.0% |
| !! | ATGTCTGAAGTTTAATCTAA+AGG | - | Chr7:21314728-21314747 | MsG0780037181.01.T01:CDS | 25.0% |
| !! | GACATTTGTAATCATTTTCA+GGG | + | Chr7:21314713-21314732 | None:intergenic | 25.0% |
| !! | TCTGGAATAACATTGTATAT+TGG | + | Chr7:21314675-21314694 | None:intergenic | 25.0% |
| !! | TTCAAATTAGTTGAAGCTTT+TGG | + | Chr7:21314939-21314958 | None:intergenic | 25.0% |
| !! | TTTTGGATTTCATGGAAAAA+TGG | - | Chr7:21313032-21313051 | MsG0780037181.01.T01:CDS | 25.0% |
| !!! | AATAGCATTTTTGGATTTCA+TGG | - | Chr7:21313024-21313043 | MsG0780037181.01.T01:CDS | 25.0% |
| !!! | ATAGAGATTAATGGCTTTAA+GGG | - | Chr7:21314753-21314772 | MsG0780037181.01.T01:CDS | 25.0% |
| !!! | ATGGTTGATAACAATGAATT+AGG | + | Chr7:21312854-21312873 | None:intergenic | 25.0% |
| !!! | ATTTTGAAGGAAGAATATTC+TGG | - | Chr7:21313466-21313485 | MsG0780037181.01.T01:intron | 25.0% |
| !!! | CTGAAGGTTTTTATTTATCA+AGG | - | Chr7:21313550-21313569 | MsG0780037181.01.T01:intron | 25.0% |
| !!! | TGTTGATGAAATACATCTTT+TGG | - | Chr7:21314165-21314184 | MsG0780037181.01.T01:CDS | 25.0% |
| !!! | TTTTGAAGGAAGAATATTCT+GGG | - | Chr7:21313467-21313486 | MsG0780037181.01.T01:intron | 25.0% |
| AACCCAAAGATATTTCTTTG+AGG | + | Chr7:21313345-21313364 | None:intergenic | 30.0% | |
| ACCCAAAGATATTTCTTTGA+GGG | + | Chr7:21313344-21313363 | None:intergenic | 30.0% | |
| AGTTCATTGAACTCTATGTT+TGG | + | Chr7:21312956-21312975 | None:intergenic | 30.0% | |
| ATGTTATTCCAGAGAGATAT+TGG | - | Chr7:21314682-21314701 | MsG0780037181.01.T01:CDS | 30.0% | |
| ATTAAGTACTTTCTTATGCG+TGG | - | Chr7:21314798-21314817 | MsG0780037181.01.T01:CDS | 30.0% | |
| CAATTTACCTAAAGATGATG+TGG | - | Chr7:21314845-21314864 | MsG0780037181.01.T01:CDS | 30.0% | |
| CACGAAGAAAAAAGTTGTAT+CGG | - | Chr7:21314029-21314048 | MsG0780037181.01.T01:intron | 30.0% | |
| CTAAAGGAGATAGAGATTAA+TGG | - | Chr7:21314744-21314763 | MsG0780037181.01.T01:CDS | 30.0% | |
| CTTCTATTCTCTCCAAAAAT+TGG | - | Chr7:21312909-21312928 | MsG0780037181.01.T01:CDS | 30.0% | |
| GAGAAATGGAGTTAAGTATT+TGG | - | Chr7:21313156-21313175 | MsG0780037181.01.T01:intron | 30.0% | |
| TCCCTCAAAGAAATATCTTT+GGG | - | Chr7:21313340-21313359 | MsG0780037181.01.T01:intron | 30.0% | |
| TGATATTCAATCAACTGCAT+TGG | - | Chr7:21313594-21313613 | MsG0780037181.01.T01:intron | 30.0% | |
| TTAAGTACTTTCTTATGCGT+GGG | - | Chr7:21314799-21314818 | MsG0780037181.01.T01:CDS | 30.0% | |
| TTCCCTCAAAGAAATATCTT+TGG | - | Chr7:21313339-21313358 | MsG0780037181.01.T01:intron | 30.0% | |
| ! | CACTTCTTTAAAAGACAAAG+GGG | + | Chr7:21312882-21312901 | None:intergenic | 30.0% |
| ! | CCACTTCTTTAAAAGACAAA+GGG | + | Chr7:21312883-21312902 | None:intergenic | 30.0% |
| ! | GATAGAGATTAATGGCTTTA+AGG | - | Chr7:21314752-21314771 | MsG0780037181.01.T01:CDS | 30.0% |
| ! | TAGTTTTTCTCAAGATGAGT+TGG | - | Chr7:21313213-21313232 | MsG0780037181.01.T01:intron | 30.0% |
| ! | TATAAAGGGTGATTTGTCAT+AGG | + | Chr7:21314457-21314476 | None:intergenic | 30.0% |
| ! | TGCTCAAAGAATAGCATTTT+TGG | - | Chr7:21313015-21313034 | MsG0780037181.01.T01:CDS | 30.0% |
| ! | TTGCACAAGTTTGAGTTTAT+GGG | - | Chr7:21314088-21314107 | MsG0780037181.01.T01:CDS | 30.0% |
| ! | TTTGCACAAGTTTGAGTTTA+TGG | - | Chr7:21314087-21314106 | MsG0780037181.01.T01:CDS | 30.0% |
| !!! | AGATGCTGGTTTTATTTTGA+AGG | - | Chr7:21313453-21313472 | MsG0780037181.01.T01:intron | 30.0% |
| !!! | GTTTTTTGTGTGATATGCTA+AGG | - | Chr7:21313991-21314010 | MsG0780037181.01.T01:intron | 30.0% |
| AAAAGACAAAGGGGAGAAAA+TGG | + | Chr7:21312873-21312892 | None:intergenic | 35.0% | |
| AAACTATCTTTGATCCGAGT+TGG | + | Chr7:21313199-21313218 | None:intergenic | 35.0% | |
| ATGACCTGCTTAAACATTTC+AGG | + | Chr7:21313112-21313131 | None:intergenic | 35.0% | |
| ATTCCAGAGAGATATTGGAA+AGG | - | Chr7:21314687-21314706 | MsG0780037181.01.T01:CDS | 35.0% | |
| ATTGATACTCACCTTTCTCA+AGG | + | Chr7:21314829-21314848 | None:intergenic | 35.0% | |
| ATTGGCCAATTGTGAAAAGT+TGG | - | Chr7:21313399-21313418 | MsG0780037181.01.T01:intron | 35.0% | |
| CTTTGAGCATCAACAATTTC+AGG | + | Chr7:21313004-21313023 | None:intergenic | 35.0% | |
| TTACCTAAAGATGATGTGGA+GGG | - | Chr7:21314849-21314868 | MsG0780037181.01.T01:CDS | 35.0% | |
| TTGATTTCACTCATCCAACT+CGG | - | Chr7:21313182-21313201 | MsG0780037181.01.T01:intron | 35.0% | |
| TTTACCTAAAGATGATGTGG+AGG | - | Chr7:21314848-21314867 | MsG0780037181.01.T01:CDS | 35.0% | |
| ! | AATTGTGAGACGTTCTAAGT+CGG | + | Chr7:21314140-21314159 | None:intergenic | 35.0% |
| ! | ACTCTCCAACTTTTCACAAT+TGG | + | Chr7:21313407-21313426 | None:intergenic | 35.0% |
| ! | AGTGAAGCTATGTGCTATTA+AGG | - | Chr7:21313372-21313391 | MsG0780037181.01.T01:intron | 35.0% |
| ! | ATGTGCTATTAAGGCACTAT+TGG | - | Chr7:21313381-21313400 | MsG0780037181.01.T01:intron | 35.0% |
| ! | GCCACTTCTTTAAAAGACAA+AGG | + | Chr7:21312884-21312903 | None:intergenic | 35.0% |
| ! | GCTAATGTTCACCCAATTTT+TGG | + | Chr7:21312924-21312943 | None:intergenic | 35.0% |
| ! | GTTTGAGTTTGTTTAAGTGC+TGG | - | Chr7:21313425-21313444 | MsG0780037181.01.T01:intron | 35.0% |
| !! | CCCTTTGTCTTTTAAAGAAG+TGG | - | Chr7:21312880-21312899 | MsG0780037181.01.T01:CDS | 35.0% |
| !! | TTTTTCTCAAGATGAGTTGG+TGG | - | Chr7:21313216-21313235 | MsG0780037181.01.T01:intron | 35.0% |
| AGTGCCTGAAATGTTTAAGC+AGG | - | Chr7:21313105-21313124 | MsG0780037181.01.T01:CDS | 40.0% | |
| AGTTAATGCCCCAAATCTGA+AGG | - | Chr7:21313534-21313553 | MsG0780037181.01.T01:intron | 40.0% | |
| CTGAAGCAAGTAACTGCAAA+CGG | + | Chr7:21313728-21313747 | None:intergenic | 40.0% | |
| TTGGGTGAACATTAGCAAAG+TGG | - | Chr7:21312928-21312947 | MsG0780037181.01.T01:CDS | 40.0% | |
| ! | ATTGTGAGACGTTCTAAGTC+GGG | + | Chr7:21314139-21314158 | None:intergenic | 40.0% |
| ! | CGATTTTGTTGCTAGTGGAA+TGG | - | Chr7:21313306-21313325 | MsG0780037181.01.T01:intron | 40.0% |
| CGTTTGCAGTTACTTGCTTC+AGG | - | Chr7:21313726-21313745 | MsG0780037181.01.T01:CDS | 45.0% | |
| GTACTTTCTTATGCGTGGGA+AGG | - | Chr7:21314803-21314822 | MsG0780037181.01.T01:CDS | 45.0% | |
| TAAAGATGATGTGGAGGGTG+AGG | - | Chr7:21314854-21314873 | MsG0780037181.01.T01:CDS | 45.0% | |
| TCACCCTCCACATCATCTTT+AGG | + | Chr7:21314855-21314874 | None:intergenic | 45.0% | |
| ! | CTTGACTTTTCCCTTGAGCA+TGG | - | Chr7:21313628-21313647 | MsG0780037181.01.T01:CDS | 45.0% |
| ! | GCATGCGATTTTGTTGCTAG+TGG | - | Chr7:21313301-21313320 | MsG0780037181.01.T01:intron | 45.0% |
| ! | TTGTGAGACGTTCTAAGTCG+GGG | + | Chr7:21314138-21314157 | None:intergenic | 45.0% |
| !! | AAGTGCTGGAATTCAGATGC+TGG | - | Chr7:21313439-21313458 | MsG0780037181.01.T01:intron | 45.0% |
| !!! | TTTTAATTTTTTTTTTCATA+AGG | + | Chr7:21314608-21314627 | None:intergenic | 5.0% |
| GACCTGACATCCATGCTCAA+GGG | + | Chr7:21313641-21313660 | None:intergenic | 50.0% | |
| GGGCCTTTCCAATATCTCTC+TGG | + | Chr7:21314693-21314712 | None:intergenic | 50.0% | |
| GTTGCGTCAGCTGTGAGAAA+TGG | - | Chr7:21313142-21313161 | MsG0780037181.01.T01:intron | 50.0% | |
| TGACCTGACATCCATGCTCA+AGG | + | Chr7:21313642-21313661 | None:intergenic | 50.0% | |
| TTCCCTTGAGCATGGATGTC+AGG | - | Chr7:21313636-21313655 | MsG0780037181.01.T01:CDS | 50.0% | |
| GCGTGGGAAGGCCTTGAGAA+AGG | - | Chr7:21314815-21314834 | MsG0780037181.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 21312818 | 21314974 | 21312818 | ID=MsG0780037181.01;Name=MsG0780037181.01 |
| Chr7 | mRNA | 21312818 | 21314974 | 21312818 | ID=MsG0780037181.01.T01;Parent=MsG0780037181.01;Name=MsG0780037181.01.T01;_AED=0.49;_eAED=0.50;_QI=0|0|0|1|1|1|3|0|471 |
| Chr7 | exon | 21314045 | 21314974 | 21314045 | ID=MsG0780037181.01.T01:exon:4215;Parent=MsG0780037181.01.T01 |
| Chr7 | exon | 21313606 | 21313779 | 21313606 | ID=MsG0780037181.01.T01:exon:4214;Parent=MsG0780037181.01.T01 |
| Chr7 | exon | 21312818 | 21313129 | 21312818 | ID=MsG0780037181.01.T01:exon:4213;Parent=MsG0780037181.01.T01 |
| Chr7 | CDS | 21314045 | 21314974 | 21314045 | ID=MsG0780037181.01.T01:cds;Parent=MsG0780037181.01.T01 |
| Chr7 | CDS | 21313606 | 21313779 | 21313606 | ID=MsG0780037181.01.T01:cds;Parent=MsG0780037181.01.T01 |
| Chr7 | CDS | 21312818 | 21313129 | 21312818 | ID=MsG0780037181.01.T01:cds;Parent=MsG0780037181.01.T01 |
| Gene Sequence |
| Protein sequence |
