AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780038471.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038471.01.T01 MTR_7g056287 56.169 308 133 2 1 306 65 372 1.34e-109 335
MsG0780038471.01.T01 MTR_7g056287 43.784 370 170 4 311 642 3 372 1.56e-88 280
MsG0780038471.01.T01 MTR_7g056277 56.494 308 132 2 1 306 321 628 5.21e-108 339
MsG0780038471.01.T01 MTR_7g056277 44.595 370 167 4 311 642 259 628 1.86e-87 285
MsG0780038471.01.T01 MTR_7g007080 41.582 392 157 15 308 641 1 378 1.20e-66 223
MsG0780038471.01.T01 MTR_7g007080 38.820 322 168 10 1 303 65 376 3.25e-51 182
MsG0780038471.01.T01 MTR_7g060470 39.640 333 168 11 1 305 65 392 1.66e-53 188
MsG0780038471.01.T01 MTR_7g060470 33.924 395 188 12 311 639 3 390 3.42e-46 168
MsG0780038471.01.T01 MTR_7g056307 89.888 89 9 0 215 303 1 89 6.57e-50 170
MsG0780038471.01.T01 MTR_7g056307 46.667 75 40 0 565 639 15 89 1.77e-14 71.6
MsG0780038471.01.T01 MTR_1g041245 34.769 325 182 13 2 305 70 385 1.02e-39 150
MsG0780038471.01.T01 MTR_1g041245 27.632 380 213 14 311 637 11 381 2.60e-25 108
MsG0780038471.01.T01 MTR_1g085120 35.987 314 173 13 14 307 167 472 4.44e-38 147
MsG0780038471.01.T01 MTR_1g085120 28.721 383 213 11 311 639 92 468 1.46e-24 107
MsG0780038471.01.T01 MTR_7g034120 35.144 313 172 10 14 307 9 309 6.54e-38 143
MsG0780038471.01.T01 MTR_7g034120 34.314 204 119 6 442 639 111 305 5.22e-23 100
MsG0780038471.01.T01 MTR_1g085120 35.987 314 173 13 14 307 242 547 1.14e-37 147
MsG0780038471.01.T01 MTR_1g085120 28.721 383 213 11 311 639 167 543 3.24e-24 107
MsG0780038471.01.T01 MTR_6g022500 33.651 315 185 13 10 308 172 478 1.56e-36 143
MsG0780038471.01.T01 MTR_6g022500 29.134 381 216 9 311 642 101 476 3.95e-28 118
MsG0780038471.01.T01 MTR_7g098510 32.298 322 194 8 1 305 76 390 1.17e-34 136
MsG0780038471.01.T01 MTR_7g098510 29.563 389 206 14 306 639 13 388 9.14e-29 119
MsG0780038471.01.T01 MTR_7g032370 33.022 321 180 11 2 305 49 351 2.23e-34 134
MsG0780038471.01.T01 MTR_7g032370 27.123 365 201 14 323 639 2 349 1.06e-18 88.6
MsG0780038471.01.T01 MTR_3g107100 29.695 394 213 15 309 642 9 398 1.19e-32 130
MsG0780038471.01.T01 MTR_3g107100 32.551 341 190 13 2 309 73 406 1.49e-32 130
MsG0780038471.01.T01 MTR_4g039440 32.827 329 194 10 1 307 90 413 2.89e-32 129
MsG0780038471.01.T01 MTR_4g039440 29.293 396 193 14 311 639 34 409 2.49e-29 121
MsG0780038471.01.T01 MTR_1g066830 33.871 310 179 11 15 305 84 386 4.67e-32 128
MsG0780038471.01.T01 MTR_1g066830 27.763 389 209 12 311 639 8 384 8.74e-25 107
MsG0780038471.01.T01 MTR_7g032380 31.975 319 169 14 2 305 70 355 7.29e-32 127
MsG0780038471.01.T01 MTR_7g032380 26.400 375 198 11 311 639 11 353 2.06e-24 105
MsG0780038471.01.T01 MTR_3g108150 33.841 328 180 9 2 305 72 386 1.45e-31 127
MsG0780038471.01.T01 MTR_3g108150 25.781 384 218 10 311 639 13 384 2.10e-22 100
MsG0780038471.01.T01 MTR_1g108820 34.069 317 170 13 15 304 80 384 1.94e-31 126
MsG0780038471.01.T01 MTR_1g108820 28.212 397 200 17 311 641 8 385 1.10e-23 103
MsG0780038471.01.T01 MTR_7g056433 29.630 378 214 12 311 639 12 386 4.68e-31 125
MsG0780038471.01.T01 MTR_7g056433 31.410 312 186 11 15 305 84 388 9.97e-28 115
MsG0780038471.01.T01 MTR_7g034115 32.302 291 177 11 2 277 70 355 5.54e-31 125
MsG0780038471.01.T01 MTR_3g107160 28.866 388 204 12 311 641 10 382 8.44e-31 125
MsG0780038471.01.T01 MTR_3g107160 29.537 281 175 9 38 303 108 380 2.29e-19 91.3
MsG0780038471.01.T01 MTR_3g108560 32.680 306 184 9 14 305 91 388 8.69e-31 125
MsG0780038471.01.T01 MTR_3g108560 29.787 376 208 13 309 637 18 384 2.58e-27 114
MsG0780038471.01.T01 MTR_7g033990 33.121 314 185 11 2 298 70 375 2.21e-30 124
MsG0780038471.01.T01 MTR_7g033990 28.125 352 197 10 311 613 11 355 1.20e-24 107
MsG0780038471.01.T01 MTR_0543s0010 31.210 314 189 8 6 305 149 449 2.46e-30 124
MsG0780038471.01.T01 MTR_0543s0010 27.806 392 223 12 293 639 71 447 4.14e-24 106
MsG0780038471.01.T01 MTR_5g073420 28.307 378 211 10 311 639 11 377 3.46e-30 123
MsG0780038471.01.T01 MTR_5g073420 29.730 259 163 7 37 286 109 357 4.21e-26 111
MsG0780038471.01.T01 MTR_3g036250 30.721 319 187 10 1 303 63 363 5.75e-30 122
MsG0780038471.01.T01 MTR_3g036250 26.440 382 209 15 309 639 3 363 6.74e-19 89.4
MsG0780038471.01.T01 MTR_7g033915 29.805 359 215 11 311 639 11 362 8.00e-30 121
MsG0780038471.01.T01 MTR_7g033915 31.250 320 179 12 2 305 70 364 1.08e-29 121
MsG0780038471.01.T01 MTR_3g099830 30.971 381 194 16 311 641 12 373 1.24e-29 121
MsG0780038471.01.T01 MTR_3g099830 31.579 266 143 12 63 304 122 372 1.14e-19 91.7
MsG0780038471.01.T01 MTR_6g045333 32.198 323 183 12 9 305 133 445 1.93e-29 122
MsG0780038471.01.T01 MTR_6g045333 24.874 398 215 13 311 639 61 443 1.64e-17 85.9
MsG0780038471.01.T01 MTR_6g011460 33.121 314 188 10 9 307 116 422 2.77e-29 121
MsG0780038471.01.T01 MTR_6g011460 27.532 385 211 13 311 639 46 418 4.19e-24 105
MsG0780038471.01.T01 MTR_7g098570 31.889 323 196 8 2 307 79 394 1.09e-28 120
MsG0780038471.01.T01 MTR_7g098570 29.231 390 200 15 308 638 17 389 1.66e-22 101
MsG0780038471.01.T01 MTR_7g098480 32.812 320 193 7 1 305 76 388 1.33e-28 120
MsG0780038471.01.T01 MTR_7g098480 28.351 388 204 11 306 636 13 383 1.21e-24 108
MsG0780038471.01.T01 MTR_3g109982 36.885 244 134 7 63 292 224 461 1.62e-28 122
MsG0780038471.01.T01 MTR_5g008950 29.948 384 192 12 313 640 1 363 2.27e-28 117
MsG0780038471.01.T01 MTR_5g008950 32.937 252 154 9 64 305 118 364 7.00e-21 95.5
MsG0780038471.01.T01 MTR_7g026500 32.308 325 172 15 12 305 87 394 2.40e-28 118
MsG0780038471.01.T01 MTR_7g026500 25.823 395 211 15 311 639 14 392 1.49e-20 94.7
MsG0780038471.01.T01 MTR_5g058100 30.390 385 200 11 311 639 9 381 9.81e-28 115
MsG0780038471.01.T01 MTR_5g058100 32.075 318 192 12 6 307 76 385 8.42e-27 113
MsG0780038471.01.T01 MTR_2g005990 27.184 412 202 15 308 641 3 394 1.02e-27 116
MsG0780038471.01.T01 MTR_2g005990 26.667 300 179 11 35 304 105 393 5.08e-15 77.8
MsG0780038471.01.T01 MTR_5g045170 31.944 288 170 9 38 305 109 390 1.22e-27 115
MsG0780038471.01.T01 MTR_5g045170 25.781 384 217 9 313 639 16 388 8.41e-21 95.5
MsG0780038471.01.T01 MTR_7g088260 32.000 325 189 11 2 306 150 462 3.06e-27 115
MsG0780038471.01.T01 MTR_7g088260 28.846 416 219 15 277 639 68 459 4.44e-22 100
MsG0780038471.01.T01 MTR_3g087260 34.932 292 164 11 32 305 173 456 4.73e-27 115
MsG0780038471.01.T01 MTR_1g108800 35.357 280 160 7 38 304 69 340 5.13e-27 113
MsG0780038471.01.T01 MTR_1g108800 29.891 368 187 14 311 641 8 341 2.52e-23 102
MsG0780038471.01.T01 MTR_5g058000 34.130 293 171 11 28 308 95 377 6.40e-27 113
MsG0780038471.01.T01 MTR_5g058000 28.947 380 204 15 311 639 8 372 1.85e-25 108
MsG0780038471.01.T01 MTR_3g040700 27.719 285 177 7 1 270 101 371 8.88e-27 114
MsG0780038471.01.T01 MTR_0492s0020 30.667 300 181 8 6 291 149 435 8.91e-27 114
MsG0780038471.01.T01 MTR_0492s0020 26.509 381 218 12 293 627 71 435 8.04e-21 96.3
MsG0780038471.01.T01 MTR_1089s0010 32.177 317 171 13 15 307 84 380 3.54e-26 111
MsG0780038471.01.T01 MTR_1089s0010 28.871 381 211 11 309 639 6 376 3.82e-23 102
MsG0780038471.01.T01 MTR_7g115270 27.492 331 209 9 2 303 71 399 6.93e-26 110
MsG0780038471.01.T01 MTR_7g115270 28.829 222 125 7 442 639 187 399 1.50e-16 82.8
MsG0780038471.01.T01 MTR_5g083890 32.184 261 144 10 61 298 144 394 1.11e-25 111
MsG0780038471.01.T01 MTR_6g022520 36.149 296 160 14 33 307 27 314 1.47e-25 108
MsG0780038471.01.T01 MTR_6g022520 28.761 226 139 7 434 642 93 313 1.05e-13 73.2
MsG0780038471.01.T01 MTR_7g055943 30.915 317 195 10 10 307 111 422 1.49e-25 110
MsG0780038471.01.T01 MTR_7g055943 27.366 391 224 13 304 639 33 418 1.30e-23 104
MsG0780038471.01.T01 MTR_8g085430 28.526 312 157 10 4 309 80 331 1.69e-25 108
MsG0780038471.01.T01 MTR_7g007340 28.800 375 186 17 309 636 11 351 2.51e-25 108
MsG0780038471.01.T01 MTR_7g007340 31.868 273 148 12 51 300 94 351 3.22e-20 93.2
MsG0780038471.01.T01 MTR_5g013500 28.840 319 192 10 8 305 60 364 2.62e-25 108
MsG0780038471.01.T01 MTR_5g013500 29.915 234 139 10 427 638 131 361 2.08e-14 75.9
MsG0780038471.01.T01 MTR_5g073370 29.412 323 183 11 17 302 62 376 3.85e-25 108
MsG0780038471.01.T01 MTR_5g007410 29.801 302 185 7 15 295 102 397 4.12e-25 109
MsG0780038471.01.T01 MTR_5g007410 25.849 383 223 9 313 639 28 405 1.22e-21 98.6
MsG0780038471.01.T01 MTR_3g107120 33.688 282 166 8 35 303 115 388 4.36e-25 108
MsG0780038471.01.T01 MTR_3g107120 26.343 391 219 10 311 641 9 390 7.49e-24 104
MsG0780038471.01.T01 MTR_5g008920 28.609 381 204 13 313 640 14 379 4.95e-25 108
MsG0780038471.01.T01 MTR_5g008920 30.822 292 188 8 24 305 93 380 1.04e-24 107
MsG0780038471.01.T01 MTR_6g040270 31.317 281 178 7 37 306 105 381 6.90e-25 107
MsG0780038471.01.T01 MTR_6g040270 27.368 380 218 11 313 642 10 381 3.10e-20 93.6
MsG0780038471.01.T01 MTR_7g083740 27.473 364 211 13 311 638 17 363 1.17e-24 106
MsG0780038471.01.T01 MTR_7g083740 32.773 238 139 9 81 305 137 366 4.72e-18 87.0
MsG0780038471.01.T01 MTR_7g056420 30.595 353 216 12 311 636 9 359 1.23e-24 110
MsG0780038471.01.T01 MTR_7g056420 30.584 291 155 12 9 279 75 338 1.66e-18 90.5
MsG0780038471.01.T01 MTR_2g007400 32.830 265 143 12 63 304 149 401 1.65e-24 106
MsG0780038471.01.T01 MTR_2g007400 31.532 222 117 10 442 641 194 402 2.11e-15 79.3
MsG0780038471.01.T01 MTR_2g007400 49.296 71 35 1 311 381 12 81 1.73e-11 67.0
MsG0780038471.01.T01 MTR_7g056430 30.595 353 216 12 311 636 9 359 1.79e-24 109
MsG0780038471.01.T01 MTR_7g056430 30.584 291 155 12 9 279 75 338 2.29e-18 90.1
MsG0780038471.01.T01 MTR_7g056020 33.840 263 157 6 49 300 112 368 1.88e-24 108
MsG0780038471.01.T01 MTR_2g007090 28.402 338 177 11 311 639 10 291 4.29e-24 103
MsG0780038471.01.T01 MTR_2g007090 31.878 229 126 10 85 305 87 293 1.55e-17 84.0
MsG0780038471.01.T01 MTR_1g107385 32.453 265 143 10 63 304 170 421 4.83e-24 105
MsG0780038471.01.T01 MTR_1g107385 32.301 226 123 11 434 641 209 422 2.85e-18 88.2
MsG0780038471.01.T01 MTR_3g105060 29.260 311 197 9 4 305 76 372 5.31e-24 104
MsG0780038471.01.T01 MTR_3g105060 27.586 377 205 11 311 639 14 370 2.05e-23 102
MsG0780038471.01.T01 MTR_1g085120 38.249 217 109 11 14 211 254 464 5.39e-24 106
MsG0780038471.01.T01 MTR_2g036470 30.822 292 172 9 34 303 110 393 7.80e-24 104
MsG0780038471.01.T01 MTR_2g036470 25.935 401 206 15 310 639 13 393 7.18e-21 95.9
MsG0780038471.01.T01 MTR_2g008320 28.278 389 207 15 311 641 52 426 8.51e-24 105
MsG0780038471.01.T01 MTR_2g008320 30.901 233 136 9 86 303 202 424 4.25e-16 81.6
MsG0780038471.01.T01 MTR_2g007450 30.892 314 164 12 34 304 115 418 8.79e-24 104
MsG0780038471.01.T01 MTR_2g007450 27.234 235 136 6 433 641 194 419 1.34e-11 67.4
MsG0780038471.01.T01 MTR_0009s0080 30.742 283 171 8 12 274 91 368 6.41e-23 102
MsG0780038471.01.T01 MTR_0009s0080 23.324 373 222 9 309 622 16 383 7.48e-14 74.3
MsG0780038471.01.T01 MTR_3g026920 25.490 408 207 13 310 641 18 404 2.04e-22 100
MsG0780038471.01.T01 MTR_3g026920 28.349 321 182 13 15 303 98 402 1.44e-16 82.8
MsG0780038471.01.T01 MTR_3g071850 31.142 289 167 11 9 273 96 376 2.73e-22 102
MsG0780038471.01.T01 MTR_7g075820 28.657 335 194 13 1 304 72 392 4.07e-22 99.4
MsG0780038471.01.T01 MTR_7g075820 62.222 45 17 0 311 355 6 50 9.00e-11 64.7
MsG0780038471.01.T01 MTR_6g022360 26.603 421 231 13 279 638 1 404 4.50e-22 99.4
MsG0780038471.01.T01 MTR_6g022360 29.545 308 204 8 10 305 101 407 2.59e-21 97.1
MsG0780038471.01.T01 MTR_3g467400 31.212 330 176 14 2 305 62 366 4.93e-22 99.0
MsG0780038471.01.T01 MTR_3g467400 26.190 378 216 12 310 639 2 364 1.58e-16 82.0
MsG0780038471.01.T01 MTR_1g053025 29.114 316 188 14 15 303 80 386 8.89e-22 98.2
MsG0780038471.01.T01 MTR_1g053025 25.500 400 216 15 311 641 2 388 3.22e-17 84.7
MsG0780038471.01.T01 MTR_2g007360 26.882 372 217 15 311 639 12 371 1.15e-21 97.8
MsG0780038471.01.T01 MTR_2g007360 30.483 269 142 14 69 304 116 372 1.43e-18 88.6
MsG0780038471.01.T01 MTR_3g023630 30.000 300 189 9 2 287 67 359 1.33e-21 97.4
MsG0780038471.01.T01 MTR_5g039470 30.605 281 167 9 9 269 55 327 3.11e-21 95.5
MsG0780038471.01.T01 MTR_7g021990 32.573 307 179 10 6 293 115 412 3.43e-21 97.1
MsG0780038471.01.T01 MTR_7g021990 23.262 374 221 8 310 627 47 410 2.06e-16 82.4
MsG0780038471.01.T01 MTR_5g063950 29.329 283 177 8 41 306 86 362 4.25e-21 95.9
MsG0780038471.01.T01 MTR_5g039490 31.095 283 162 9 33 305 116 375 4.38e-21 96.3
MsG0780038471.01.T01 MTR_7g022105 35.102 245 141 8 63 291 169 411 5.03e-21 96.7
MsG0780038471.01.T01 MTR_7g022105 25.134 374 216 9 310 628 48 412 3.58e-19 90.9
MsG0780038471.01.T01 MTR_5g031970 31.136 273 164 8 38 303 98 353 8.11e-21 95.1
MsG0780038471.01.T01 MTR_5g031970 22.727 374 212 8 309 639 14 353 2.15e-13 72.4
MsG0780038471.01.T01 MTR_7g021950 32.573 307 179 10 6 293 115 412 8.26e-21 96.7
MsG0780038471.01.T01 MTR_7g021950 24.054 370 223 8 310 627 47 410 4.53e-16 82.0
MsG0780038471.01.T01 MTR_2g008310 25.581 387 214 12 311 641 2 370 1.02e-20 95.1
MsG0780038471.01.T01 MTR_2g008310 30.396 227 136 9 63 273 123 343 8.71e-15 77.0
MsG0780038471.01.T01 MTR_5g045510 30.124 322 183 12 1 304 73 370 2.16e-20 94.0
MsG0780038471.01.T01 MTR_5g045510 23.575 386 216 12 308 639 9 369 3.38e-14 75.1
MsG0780038471.01.T01 MTR_4g080610 33.778 225 128 6 85 292 124 344 4.61e-20 92.8
MsG0780038471.01.T01 MTR_5g039450 31.128 257 134 10 38 273 101 335 6.76e-20 92.0
MsG0780038471.01.T01 MTR_5g039450 26.133 375 210 12 309 639 4 355 3.92e-17 84.0
MsG0780038471.01.T01 MTR_2g007500 31.301 246 136 8 34 250 91 332 5.67e-19 89.0
MsG0780038471.01.T01 MTR_3g082890 29.503 322 186 11 2 286 153 470 5.69e-19 90.9
MsG0780038471.01.T01 MTR_5g054920 36.041 197 103 8 106 286 3 192 8.30e-19 85.5
MsG0780038471.01.T01 MTR_5g012840 26.689 296 149 8 2 279 48 293 1.02e-18 88.2
MsG0780038471.01.T01 MTR_3g110010 37.805 164 83 6 63 213 224 381 1.89e-17 87.0
MsG0780038471.01.T01 MTR_1g108820 34.685 222 113 9 15 211 80 294 2.93e-17 84.3
MsG0780038471.01.T01 MTR_5g073340 29.098 244 144 9 32 252 73 310 3.29e-17 83.6
MsG0780038471.01.T01 MTR_7g007370 31.939 263 129 10 309 549 15 249 6.17e-17 83.2
MsG0780038471.01.T01 MTR_7g007370 35.152 165 84 6 61 213 96 249 9.01e-15 76.6
MsG0780038471.01.T01 MTR_3g082890 27.855 359 181 12 2 286 73 427 1.03e-16 83.6
MsG0780038471.01.T01 MTR_5g061680 25.000 296 156 8 307 557 7 281 3.76e-16 80.5
MsG0780038471.01.T01 MTR_5g061680 31.250 224 115 11 1 213 73 268 2.65e-13 72.0
MsG0780038471.01.T01 MTR_4g098590 31.022 274 141 13 34 273 95 354 5.22e-16 80.5
MsG0780038471.01.T01 MTR_4g098590 29.648 199 107 7 434 611 170 356 4.90e-11 65.5
MsG0780038471.01.T01 MTR_6g044572 28.428 299 179 8 26 309 113 391 1.18e-15 79.7
MsG0780038471.01.T01 MTR_6g044560 28.333 300 178 9 26 309 289 567 1.16e-14 77.8
MsG0780038471.01.T01 MTR_5g065100 27.622 286 169 7 38 315 103 358 1.38e-14 77.0
MsG0780038471.01.T01 MTR_3g108560 30.841 214 127 8 14 214 91 296 1.77e-14 75.1
MsG0780038471.01.T01 MTR_1g090900 36.752 117 63 4 309 424 9 115 5.51e-14 71.6
MsG0780038471.01.T01 MTR_7g098590 42.157 102 54 2 306 407 13 109 7.74e-14 69.3
MsG0780038471.01.T01 MTR_7g114710 28.772 285 153 10 9 273 80 334 1.88e-13 72.8
MsG0780038471.01.T01 MTR_7g034110 28.421 285 147 8 2 273 70 310 3.03e-13 72.0
MsG0780038471.01.T01 MTR_7g075800 27.734 256 131 12 63 271 145 393 3.41e-13 73.2
MsG0780038471.01.T01 MTR_6g029350 27.778 216 119 10 109 306 2 198 2.04e-12 67.8
MsG0780038471.01.T01 MTR_6g029350 28.767 219 113 11 445 642 2 198 2.44e-11 64.7
MsG0780038471.01.T01 MTR_8g077460 27.597 308 184 13 15 305 89 374 5.51e-12 68.2
MsG0780038471.01.T01 MTR_3g095600 30.415 217 127 6 308 504 1 213 7.59e-12 67.0
MsG0780038471.01.T01 MTR_5g061410 32.258 186 112 5 41 214 83 266 1.86e-11 65.5
MsG0780038471.01.T01 MTR_1377s0010 34.109 129 77 4 151 273 1 127 2.04e-11 62.4
MsG0780038471.01.T01 MTR_8g467800 28.682 258 140 11 68 307 223 454 2.05e-11 67.0
MsG0780038471.01.T01 MTR_7g056417 34.028 144 81 4 63 192 11 154 2.29e-11 62.8
MsG0780038471.01.T01 MTR_2g007550 30.570 193 97 6 135 303 153 332 3.30e-11 65.9
MsG0780038471.01.T01 MTR_5g073400 34.545 110 67 3 15 122 7 113 4.34e-11 61.6
MsG0780038471.01.T01 MTR_4g134150 32.540 126 77 3 1 122 68 189 4.77e-11 63.5
MsG0780038471.01.T01 MTR_6g013160 28.899 218 113 6 38 213 133 350 5.30e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780038471.01.T01 AT5G53640 35.294 119 64 4 308 424 19 126 3.58e-11 63.9

Find 103 sgRNAs with CRISPR-Local

Find 231 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTCAGTTTCTTCTCTTTCT+TGG 0.152095 7:-47274807 MsG0780038471.01.T01:CDS
CATTGGAGTATCTTGAAAAT+TGG 0.205605 7:-47272159 MsG0780038471.01.T01:CDS
GTTGTAATTCAAGCTTCTTC+TGG 0.223514 7:+47271378 None:intergenic
TCTTGATGGTTGTCCAATTC+TGG 0.223628 7:-47275221 MsG0780038471.01.T01:CDS
GCTTCAAAATTCTCAAGAAT+TGG 0.263058 7:+47271970 None:intergenic
ACGGTTTCAGGCAAAATATT+TGG 0.269350 7:+47271536 None:intergenic
GTAAACACTTCGTTTGAAAA+TGG 0.273545 7:+47272285 None:intergenic
TGGCATGTCGCTGAGCTCTT+TGG 0.298280 7:+47271338 None:intergenic
AGGCGTTCAGGAAAGATATC+TGG 0.298976 7:+47274781 None:intergenic
AGTATGATGAAGAGTTTAAA+AGG 0.301533 7:-47275153 MsG0780038471.01.T01:CDS
AAGCTCCAAATGCGTCAAAT+TGG 0.310602 7:+47274927 None:intergenic
TTGCAGACTTCGTGCGTAAA+TGG 0.316682 7:+47275534 None:intergenic
GGCATGTCGCTGAGCTCTTT+GGG 0.320338 7:+47271339 None:intergenic
GCTTCAAAATCCTCCAGAAT+TGG 0.334575 7:+47275208 None:intergenic
AATTAGTTGTCATCCTTTCA+TGG 0.338069 7:-47271405 MsG0780038471.01.T01:CDS
TTTGCATTTCAAGCATCTCC+TGG 0.347479 7:+47274623 None:intergenic
AACTGCAAAGAAACGGTTTC+AGG 0.348334 7:+47271524 None:intergenic
CTTAAAACTTTACATTTGAA+TGG 0.351562 7:-47275280 MsG0780038471.01.T01:CDS
TTTCTAATGTTGAATTTCTT+CGG 0.358242 7:-47275066 MsG0780038471.01.T01:CDS
TCTATTTGACTCATGTTGAT+TGG 0.358328 7:-47271658 MsG0780038471.01.T01:CDS
TTTGTAGGAGAAACGTTAAT+TGG 0.360555 7:-47274903 MsG0780038471.01.T01:CDS
AAACCGTGAAATGGGTTTGC+CGG 0.363938 7:+47272327 None:intergenic
AAGCATTTAATCACTTGGTC+AGG 0.366049 7:+47271913 None:intergenic
AACATTGAAAACAGATAGAT+TGG 0.379096 7:+47275102 None:intergenic
CAAGTCTTCTTTCACAAAGA+TGG 0.398391 7:-47272408 MsG0780038471.01.T01:CDS
CAGGTTTGGAAACCGTGAAA+TGG 0.401969 7:+47272318 None:intergenic
CATTTCACGGTTTCCAAACC+TGG 0.402078 7:-47272317 MsG0780038471.01.T01:CDS
TTGTAATTCAAGCTTCTTCT+GGG 0.402501 7:+47271379 None:intergenic
CGCATTTGGAGCTTATTTGT+AGG 0.403379 7:-47274918 MsG0780038471.01.T01:CDS
AAATGCGAAGAAAGGCGTTC+AGG 0.403642 7:+47274769 None:intergenic
ATGGCTGCAAATACCAGGTT+TGG 0.406474 7:+47272304 None:intergenic
TTACTATTGCAAATTCTTGA+TGG 0.408785 7:-47275235 MsG0780038471.01.T01:CDS
GACTCATGTTGATTGGAAAC+TGG 0.412803 7:-47271651 MsG0780038471.01.T01:CDS
CAAAACTCCCTTCGCTTACA+AGG 0.414266 7:+47272239 None:intergenic
GTAGATCTATGGATTTGTTC+CGG 0.424665 7:-47274956 MsG0780038471.01.T01:intron
CATACTCATCTGTCGAGTTT+CGG 0.433854 7:+47275170 None:intergenic
ATGTTTGCTCTAACAAACTT+TGG 0.439164 7:+47271889 None:intergenic
TTGCATTTCAAGCATCTCCT+GGG 0.441276 7:+47274624 None:intergenic
AGGTTTGGAAACCGTGAAAT+GGG 0.451501 7:+47272319 None:intergenic
CAGGGGAAATCGAGGAGTTA+CGG 0.465403 7:+47271932 None:intergenic
GTTTAAAAGGTTAACCAAGT+TGG 0.466768 7:-47275140 MsG0780038471.01.T01:CDS
TCACATGTCGCAGAGTTCAC+TGG 0.466983 7:+47274583 None:intergenic
GTATCTCGATTTATCAAATC+CGG 0.474636 7:-47272346 MsG0780038471.01.T01:CDS
GAGACATGGTTGGCTGGTGC+AGG 0.475682 7:-47272190 MsG0780038471.01.T01:CDS
AATCCGGCAAACCCATTTCA+CGG 0.477368 7:-47272330 MsG0780038471.01.T01:CDS
GTCTGCAAAATCCTATCAAA+AGG 0.485884 7:-47275519 MsG0780038471.01.T01:CDS
TGCGCTATTGCAAATTATAG+AGG 0.491078 7:-47274739 MsG0780038471.01.T01:CDS
ACATTAGAAAAGCCTTCTAA+AGG 0.496686 7:+47275079 None:intergenic
AAAATACATGTAAACAATAG+AGG 0.498567 7:+47271575 None:intergenic
GAAATGAGAGAATGTGACTT+AGG 0.499518 7:+47272455 None:intergenic
AAATGCAGATGGAGACTGAC+AGG 0.507573 7:-47272501 MsG0780038471.01.T01:intron
AAGCATCTCCTGGGGAGTCA+TGG 0.511886 7:+47274633 None:intergenic
CACAAAGATGGACCTCACTC+TGG 0.513008 7:-47272396 MsG0780038471.01.T01:CDS
AGTATCATTTAATATAAACT+TGG 0.515740 7:+47271318 None:intergenic
TTGGTAAGCATTTAATCACT+TGG 0.520379 7:+47271908 None:intergenic
CACATGTCGCAGAGTTCACT+GGG 0.523145 7:+47274584 None:intergenic
ACTCTTTGAAATGCGAAGAA+AGG 0.523175 7:+47274761 None:intergenic
TCCTGGGGAGTCATGGATGG+TGG 0.523298 7:+47274640 None:intergenic
TGCCGCTGCAGAACGCGGAA+TGG 0.525838 7:-47275428 MsG0780038471.01.T01:CDS
ACACTACAAAGAGGTTCTAA+AGG 0.527214 7:+47271841 None:intergenic
TGAAAATGGCTGCAAATACC+AGG 0.528602 7:+47272299 None:intergenic
ACAATTAAAATTATGTCTAT+CGG 0.529749 7:+47275384 None:intergenic
TGATGGTTGTCCAATTCTGG+AGG 0.538761 7:-47275218 MsG0780038471.01.T01:CDS
GGCGTTCAGGAAAGATATCT+GGG 0.539145 7:+47274782 None:intergenic
GTGTTTGATATATGATGTGT+TGG 0.541706 7:-47274881 MsG0780038471.01.T01:CDS
AATGTCTGCCTTGACCAACT+TGG 0.542462 7:+47275126 None:intergenic
AAGGTTAACCAAGTTGGTCA+AGG 0.544767 7:-47275134 MsG0780038471.01.T01:CDS
TTCCATTCCGCGTTCTGCAG+CGG 0.554345 7:+47275426 None:intergenic
AGCATTTAATCACTTGGTCA+GGG 0.555682 7:+47271914 None:intergenic
ATCTCCTGGGGAGTCATGGA+TGG 0.570410 7:+47274637 None:intergenic
TTCTTCTGGGAATCCATGAA+AGG 0.575727 7:+47271392 None:intergenic
AGGTTCTGCCTCAGATGTGA+TGG 0.579009 7:-47275499 MsG0780038471.01.T01:CDS
GAATTCAACATCTTTACAGA+GGG 0.579199 7:-47274677 MsG0780038471.01.T01:CDS
TGCATTTCAAGCATCTCCTG+GGG 0.579525 7:+47274625 None:intergenic
AAACTCCGCCTTGTAAGCGA+AGG 0.584680 7:-47272247 MsG0780038471.01.T01:CDS
GTTGTGAAAGCATCTTCAGT+TGG 0.584809 7:+47272430 None:intergenic
TCCACCATCCATGACTCCCC+AGG 0.585287 7:-47274641 MsG0780038471.01.T01:CDS
GAAACTGACGTTACAAGTTG+AGG 0.593130 7:+47274820 None:intergenic
TGAATTTCTTCGGCTAGAAG+AGG 0.598066 7:-47275056 MsG0780038471.01.T01:intron
TGCGTCAAATTGGAAAACTC+CGG 0.598611 7:+47274937 None:intergenic
CACTTGGTCAGGGGAAATCG+AGG 0.600567 7:+47271924 None:intergenic
CGTTCAACTTGAGAACGACA+AGG 0.603089 7:+47275344 None:intergenic
TAGAATTACCATCACATCTG+AGG 0.607202 7:+47275491 None:intergenic
TGTCGCTGAGCTCTTTGGGA+AGG 0.610278 7:+47271343 None:intergenic
TGACAGGATTAGCTCGATGT+CGG 0.615231 7:-47272485 MsG0780038471.01.T01:CDS
GTCTTGACATCAAGTTCTAG+TGG 0.617574 7:+47275460 None:intergenic
AACTCCGCCTTGTAAGCGAA+GGG 0.627839 7:-47272246 MsG0780038471.01.T01:CDS
GCATTTAATCACTTGGTCAG+GGG 0.629447 7:+47271915 None:intergenic
TAAACAATAGAGGCATCTCA+AGG 0.635376 7:+47271585 None:intergenic
AGAGATTCAACACTACAAAG+AGG 0.637034 7:+47271832 None:intergenic
GCGCTATTGCAAATTATAGA+GGG 0.637929 7:-47274738 MsG0780038471.01.T01:CDS
AGGAACTAAGAGCCAGAGTG+AGG 0.647767 7:+47272384 None:intergenic
TTAACTGCCGCTGCAGAACG+CGG 0.648562 7:-47275433 MsG0780038471.01.T01:CDS
TGAATCTCTTCGCTTCGTAG+AGG 0.650463 7:-47271818 MsG0780038471.01.T01:intron
TGAATTCAACATCTTTACAG+AGG 0.651346 7:-47274678 MsG0780038471.01.T01:CDS
CGTAAACTATAAATGCAACA+AGG 0.656394 7:+47272119 None:intergenic
GATACATCGAGGTCAAGAGT+AGG 0.670421 7:+47272364 None:intergenic
AACTCCCTTCGCTTACAAGG+CGG 0.695347 7:+47272242 None:intergenic
TGGTGCAGGAGAACATACAT+TGG 0.724642 7:-47272176 MsG0780038471.01.T01:CDS
TTTCATTGGAGATGTGTATG+CGG 0.741566 7:-47271480 MsG0780038471.01.T01:CDS
TAGAACTTGATGTCAAGACG+TGG 0.747337 7:-47275456 MsG0780038471.01.T01:CDS
TATCGGAAATATGAACATCG+AGG 0.748982 7:+47275401 None:intergenic
TGATAAATCGAGATACATCG+AGG 0.751926 7:+47272353 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGAAATAAATAACAAATTA+AGG + Chr7:47275086-47275105 None:intergenic 10.0%
!!! AGAAAATAATAATTTTACTA+AGG + Chr7:47273816-47273835 None:intergenic 10.0%
!!! ATATAATTTTTTTAAACCAA+AGG - Chr7:47273203-47273222 MsG0780038471.01.T01:intron 10.0%
!! ACAATTAAAATTATGTCTAT+CGG + Chr7:47271488-47271507 None:intergenic 15.0%
!!! AAGATTTTCGAAAAAAAAAT+TGG - Chr7:47273485-47273504 MsG0780038471.01.T01:intron 15.0%
!!! AATTTTTTTTTCGAAAATCT+TGG + Chr7:47273486-47273505 None:intergenic 15.0%
!! AAAATACATGTAAACAATAG+AGG + Chr7:47275297-47275316 None:intergenic 20.0%
!! ATACATAGATTCTGTTATAT+AGG - Chr7:47272427-47272446 MsG0780038471.01.T01:CDS 20.0%
!! ATTATATATCAGTTCCATAT+AGG + Chr7:47273190-47273209 None:intergenic 20.0%
!! CATTAAATAAAATAGACCTT+TGG + Chr7:47273222-47273241 None:intergenic 20.0%
!! CTTAAAACTTTACATTTGAA+TGG - Chr7:47271589-47271608 MsG0780038471.01.T01:CDS 20.0%
!! GATTATAATGGTAAAGTAAA+TGG + Chr7:47273030-47273049 None:intergenic 20.0%
!! TAGTTTAATTCAAAATCTAC+TGG - Chr7:47273905-47273924 MsG0780038471.01.T01:intron 20.0%
!! TATGAAATCAATATAAGCAT+CGG + Chr7:47273381-47273400 None:intergenic 20.0%
!! TGTACTGTTAAAAATTTCAT+TGG - Chr7:47275375-47275394 MsG0780038471.01.T01:CDS 20.0%
!! TTAGAGAAAAGAATACATAA+TGG - Chr7:47273625-47273644 MsG0780038471.01.T01:intron 20.0%
!! TTTCTAATGTTGAATTTCTT+CGG - Chr7:47271803-47271822 MsG0780038471.01.T01:intron 20.0%
!!! AAAATATACACCATCATTTT+CGG + Chr7:47272403-47272422 None:intergenic 20.0%
!!! AAATGTAAAGTTTTAAGCAA+GGG + Chr7:47271586-47271605 None:intergenic 20.0%
!!! AGTAGATTTTGAATTAAACT+AGG + Chr7:47273906-47273925 None:intergenic 20.0%
!!! CAAAGGTCTATTTTATTTAA+TGG - Chr7:47273220-47273239 MsG0780038471.01.T01:intron 20.0%
!!! GAAAAGACTTTTAAAACAAT+AGG + Chr7:47272677-47272696 None:intergenic 20.0%
!!! GTATTTTTTATCATATCTCA+GGG - Chr7:47275310-47275329 MsG0780038471.01.T01:CDS 20.0%
!!! GTTTTTATTGAACTTCTTAA+CGG - Chr7:47274872-47274891 MsG0780038471.01.T01:CDS 20.0%
!!! TACATTCATGATAATGATAA+TGG - Chr7:47273773-47273792 MsG0780038471.01.T01:intron 20.0%
!!! TAGCTTTAAATCTTACTAAA+GGG + Chr7:47272507-47272526 None:intergenic 20.0%
!!! TGTATTTTTTATCATATCTC+AGG - Chr7:47275309-47275328 MsG0780038471.01.T01:CDS 20.0%
! AACATTGAAAACAGATAGAT+TGG + Chr7:47271770-47271789 None:intergenic 25.0%
! AAGACAAGACATGTAAAATT+AGG + Chr7:47275126-47275145 None:intergenic 25.0%
! ACCATAGAACACATTAAAAA+AGG + Chr7:47272957-47272976 None:intergenic 25.0%
! AGTATGATGAAGAGTTTAAA+AGG - Chr7:47271716-47271735 MsG0780038471.01.T01:intron 25.0%
! ATGAAATCAATATAAGCATC+GGG + Chr7:47273380-47273399 None:intergenic 25.0%
! CAACATCTTAAAGATAATGA+AGG + Chr7:47272835-47272854 None:intergenic 25.0%
! CTTAAAGATAATGAAGGAAT+GGG + Chr7:47272829-47272848 None:intergenic 25.0%
! GATGATAGCAATAAACAATT+AGG - Chr7:47274101-47274120 MsG0780038471.01.T01:intron 25.0%
! TAAAGGTCAACCATAATTTA+AGG + Chr7:47272644-47272663 None:intergenic 25.0%
! TATTAATGTAAAATGACCGA+GGG - Chr7:47273404-47273423 MsG0780038471.01.T01:intron 25.0%
! TCTTAAAGATAATGAAGGAA+TGG + Chr7:47272830-47272849 None:intergenic 25.0%
! TTACTATTGCAAATTCTTGA+TGG - Chr7:47271634-47271653 MsG0780038471.01.T01:CDS 25.0%
! TTATTAATGTAAAATGACCG+AGG - Chr7:47273403-47273422 MsG0780038471.01.T01:intron 25.0%
! TTTATATGTAAACCTTGACA+AGG + Chr7:47273120-47273139 None:intergenic 25.0%
!! AGAAAAGAATACATAATGGA+GGG - Chr7:47273629-47273648 MsG0780038471.01.T01:intron 25.0%
!! ATTGTCAAATTAGTTTGACA+TGG - Chr7:47272912-47272931 MsG0780038471.01.T01:intron 25.0%
!! ATTTGTTGGCATTAGAAAAA+TGG - Chr7:47272536-47272555 MsG0780038471.01.T01:intron 25.0%
!! CACTAATTTTCTTACTATGT+AGG - Chr7:47273440-47273459 MsG0780038471.01.T01:intron 25.0%
!! TAGATTATCTTTTCGTTGAA+TGG + Chr7:47273061-47273080 None:intergenic 25.0%
!!! AGAAGTAAACTTTTGAGTAA+TGG + Chr7:47274837-47274856 None:intergenic 25.0%
!!! AGCTTTAAATCTTACTAAAG+GGG + Chr7:47272506-47272525 None:intergenic 25.0%
!!! CAAATGTAAAGTTTTAAGCA+AGG + Chr7:47271587-47271606 None:intergenic 25.0%
!!! CTAGCTTTAAATCTTACTAA+AGG + Chr7:47272508-47272527 None:intergenic 25.0%
!!! GATGCTTATATTGATTTCAT+AGG - Chr7:47273380-47273399 MsG0780038471.01.T01:intron 25.0%
!!! TCCTTTTTTAATGTGTTCTA+TGG - Chr7:47272953-47272972 MsG0780038471.01.T01:intron 25.0%
!!! TGTACTAGTATTGATCTTTT+TGG - Chr7:47273291-47273310 MsG0780038471.01.T01:intron 25.0%
!!! TTTTTTTCGAAAATCTTGGA+GGG + Chr7:47273482-47273501 None:intergenic 25.0%
!!! TTTTTTTTCGAAAATCTTGG+AGG + Chr7:47273483-47273502 None:intergenic 25.0%
AAAGCATGGAGTACAATAAA+CGG - Chr7:47273985-47274004 MsG0780038471.01.T01:intron 30.0%
AATTAGTTGTCATCCTTTCA+TGG - Chr7:47275464-47275483 MsG0780038471.01.T01:CDS 30.0%
ACATATATGCCTAACCTATA+TGG - Chr7:47273173-47273192 MsG0780038471.01.T01:intron 30.0%
ACATGCTTCAATGAAAAAAC+TGG + Chr7:47273274-47273293 None:intergenic 30.0%
ACATTAGAAAAGCCTTCTAA+AGG + Chr7:47271793-47271812 None:intergenic 30.0%
ACTAAGCAAATTAGCGAAAT+TGG + Chr7:47271874-47271893 None:intergenic 30.0%
ACTAATTTGACAATCTTCAG+AGG + Chr7:47272906-47272925 None:intergenic 30.0%
AGATACAAACCTAAGAAAGA+GGG + Chr7:47273323-47273342 None:intergenic 30.0%
AGCTAGTACTCAATATTTGT+TGG - Chr7:47272522-47272541 MsG0780038471.01.T01:intron 30.0%
ATAACACTAAGCTTGTGATT+TGG + Chr7:47273150-47273169 None:intergenic 30.0%
ATATCAGTTCCATATAGGTT+AGG + Chr7:47273185-47273204 None:intergenic 30.0%
ATGATTCAAATCAGTACACA+AGG - Chr7:47274166-47274185 MsG0780038471.01.T01:intron 30.0%
ATGGTATCCTCAAAAGAATA+CGG + Chr7:47272479-47272498 None:intergenic 30.0%
ATGTTTGCTCTAACAAACTT+TGG + Chr7:47274983-47275002 None:intergenic 30.0%
CAATAGGCTATCATAGTTAA+AGG + Chr7:47272661-47272680 None:intergenic 30.0%
CGTAAACTATAAATGCAACA+AGG + Chr7:47274753-47274772 None:intergenic 30.0%
GAATTCAACATCTTTACAGA+GGG - Chr7:47272192-47272211 MsG0780038471.01.T01:CDS 30.0%
GAGAAAAGAATACATAATGG+AGG - Chr7:47273628-47273647 MsG0780038471.01.T01:intron 30.0%
GCTTCAAAATTCTCAAGAAT+TGG + Chr7:47274902-47274921 None:intergenic 30.0%
GTAAACACTTCGTTTGAAAA+TGG + Chr7:47274587-47274606 None:intergenic 30.0%
GTATCTCGATTTATCAAATC+CGG - Chr7:47274523-47274542 MsG0780038471.01.T01:intron 30.0%
GTGTTTGATATATGATGTGT+TGG - Chr7:47271988-47272007 MsG0780038471.01.T01:CDS 30.0%
GTTTAAAAGGTTAACCAAGT+TGG - Chr7:47271729-47271748 MsG0780038471.01.T01:intron 30.0%
TAGATACAAACCTAAGAAAG+AGG + Chr7:47273324-47273343 None:intergenic 30.0%
TCCAAAAACAAAAGAAGAGA+TGG - Chr7:47272587-47272606 MsG0780038471.01.T01:intron 30.0%
TCTATTTGACTCATGTTGAT+TGG - Chr7:47275211-47275230 MsG0780038471.01.T01:CDS 30.0%
TGAATTCAACATCTTTACAG+AGG - Chr7:47272191-47272210 MsG0780038471.01.T01:CDS 30.0%
TGAGTTAAATTGCGAAAAAC+AGG + Chr7:47275180-47275199 None:intergenic 30.0%
TTATACTCGCAATTTCATCT+TGG + Chr7:47274130-47274149 None:intergenic 30.0%
TTATAGTTTACGTAACCTTG+TGG - Chr7:47274761-47274780 MsG0780038471.01.T01:CDS 30.0%
TTGGTAAGCATTTAATCACT+TGG + Chr7:47274964-47274983 None:intergenic 30.0%
TTGTAATTCAAGCTTCTTCT+GGG + Chr7:47275493-47275512 None:intergenic 30.0%
TTTGTAGGAGAAACGTTAAT+TGG - Chr7:47271966-47271985 MsG0780038471.01.T01:CDS 30.0%
! CATTGGAGTATCTTGAAAAT+TGG - Chr7:47274710-47274729 MsG0780038471.01.T01:CDS 30.0%
! GTTTTCAATGTTCCTTTAGA+AGG - Chr7:47271778-47271797 MsG0780038471.01.T01:intron 30.0%
! TCAAATTAGTTTGACATGGT+GGG - Chr7:47272916-47272935 MsG0780038471.01.T01:intron 30.0%
! TTGTTTTCTCGAGTAACTTA+AGG + Chr7:47274055-47274074 None:intergenic 30.0%
! TTTTCAATTTGAGAACCACA+AGG + Chr7:47274779-47274798 None:intergenic 30.0%
! TTTTGTTACCTGTAGATCTA+TGG - Chr7:47271902-47271921 MsG0780038471.01.T01:CDS 30.0%
!! AATATTCAAGTGTCGAGTAA+AGG + Chr7:47273941-47273960 None:intergenic 30.0%
!! GAGTTTATTTTTCTCGACAT+TGG - Chr7:47271611-47271630 MsG0780038471.01.T01:CDS 30.0%
!! TTTTTGAGAATGACAAAGCA+TGG - Chr7:47273971-47273990 MsG0780038471.01.T01:intron 30.0%
!!! AAGGTCAAAATTTTGAAGCA+TGG + Chr7:47275268-47275287 None:intergenic 30.0%
!!! ACCATCTCTTCTTTTGTTTT+TGG + Chr7:47272591-47272610 None:intergenic 30.0%
!!! AGAAGAAGTTTTTGAAGCTT+AGG + Chr7:47272022-47272041 None:intergenic 30.0%
!!! AGGTCAAAATTTTGAAGCAT+GGG + Chr7:47275267-47275286 None:intergenic 30.0%
!!! TCACAATTTTGAAATGCAGA+TGG - Chr7:47274357-47274376 MsG0780038471.01.T01:intron 30.0%
AAGCATTTAATCACTTGGTC+AGG + Chr7:47274959-47274978 None:intergenic 35.0%
AATTTGACAATCTTCAGAGG+TGG + Chr7:47272903-47272922 None:intergenic 35.0%
ACGGTTTCAGGCAAAATATT+TGG + Chr7:47275336-47275355 None:intergenic 35.0%
ACTCTTGGAAGAAATTGACA+TGG - Chr7:47272751-47272770 MsG0780038471.01.T01:intron 35.0%
AGAGATTCAACACTACAAAG+AGG + Chr7:47275040-47275059 None:intergenic 35.0%
AGCATTTAATCACTTGGTCA+GGG + Chr7:47274958-47274977 None:intergenic 35.0%
ATCATTAAGAAATGTCGACC+TGG - Chr7:47272617-47272636 MsG0780038471.01.T01:intron 35.0%
ATCTTACTAAAGGGGTTGTA+TGG + Chr7:47272498-47272517 None:intergenic 35.0%
ATGGCGAACTTGGATTATAA+TGG + Chr7:47273042-47273061 None:intergenic 35.0%
CAAGTCTTCTTTCACAAAGA+TGG - Chr7:47274461-47274480 MsG0780038471.01.T01:intron 35.0%
CTGTTATATAGGTGAATCGT+TGG - Chr7:47272438-47272457 MsG0780038471.01.T01:CDS 35.0%
GAAATGAGAGAATGTGACTT+AGG + Chr7:47274417-47274436 None:intergenic 35.0%
GAACAAATCCATAGATCTAC+AGG + Chr7:47271913-47271932 None:intergenic 35.0%
GCGCTATTGCAAATTATAGA+GGG - Chr7:47272131-47272150 MsG0780038471.01.T01:CDS 35.0%
GGATGTGTGTGTATTAAAGT+AGG + Chr7:47274034-47274053 None:intergenic 35.0%
GTCTGCAAAATCCTATCAAA+AGG - Chr7:47271350-47271369 MsG0780038471.01.T01:CDS 35.0%
GTTGTAATTCAAGCTTCTTC+TGG + Chr7:47275494-47275513 None:intergenic 35.0%
TAGAATTACCATCACATCTG+AGG + Chr7:47271381-47271400 None:intergenic 35.0%
TATCGGAAATATGAACATCG+AGG + Chr7:47271471-47271490 None:intergenic 35.0%
TATGCGTGAAATGCTCAAAT+AGG - Chr7:47273878-47273897 MsG0780038471.01.T01:intron 35.0%
TCTTTCATGATGCTTGAAAC+TGG - Chr7:47272999-47273018 MsG0780038471.01.T01:intron 35.0%
TGATAAATCGAGATACATCG+AGG + Chr7:47274519-47274538 None:intergenic 35.0%
TGCGCTATTGCAAATTATAG+AGG - Chr7:47272130-47272149 MsG0780038471.01.T01:CDS 35.0%
TGGAAATAACCCTCTTTCTT+AGG - Chr7:47273311-47273330 MsG0780038471.01.T01:intron 35.0%
TTGGCATTAGAAAAATGGAC+AGG - Chr7:47272541-47272560 MsG0780038471.01.T01:intron 35.0%
TTTCATTGGAGATGTGTATG+CGG - Chr7:47275389-47275408 MsG0780038471.01.T01:CDS 35.0%
! AAGGAATTGACTCTTGAATC+TGG - Chr7:47272779-47272798 MsG0780038471.01.T01:intron 35.0%
! ACACTACAAAGAGGTTCTAA+AGG + Chr7:47275031-47275050 None:intergenic 35.0%
! AGAAATTGACATGGACTACA+AGG - Chr7:47272760-47272779 MsG0780038471.01.T01:intron 35.0%
! CAAATTAGTTTGACATGGTG+GGG - Chr7:47272917-47272936 MsG0780038471.01.T01:intron 35.0%
! CTTTTGCAACTGCAAAGAAA+CGG + Chr7:47275355-47275374 None:intergenic 35.0%
! GTAGATCTATGGATTTGTTC+CGG - Chr7:47271913-47271932 MsG0780038471.01.T01:CDS 35.0%
! GTCAAATTAGTTTGACATGG+TGG - Chr7:47272915-47272934 MsG0780038471.01.T01:intron 35.0%
! GTTTTCCAATTTGACGCATT+TGG - Chr7:47271937-47271956 MsG0780038471.01.T01:CDS 35.0%
! TCAACCATAATTTAAGGTCC+AGG + Chr7:47272638-47272657 None:intergenic 35.0%
! TTCTCAACCGTATTCTTTTG+AGG - Chr7:47272469-47272488 MsG0780038471.01.T01:CDS 35.0%
!! ACTCTTTGAAATGCGAAGAA+AGG + Chr7:47272111-47272130 None:intergenic 35.0%
!! TAAACAATAGAGGCATCTCA+AGG + Chr7:47275287-47275306 None:intergenic 35.0%
!!! ATACGATTTTGAGACATGGT+TGG - Chr7:47274669-47274688 MsG0780038471.01.T01:CDS 35.0%
!!! GGTCAAAATTTTGAAGCATG+GGG + Chr7:47275266-47275285 None:intergenic 35.0%
!!! GTAAAGTTTTAAGCAAGGGA+AGG + Chr7:47271582-47271601 None:intergenic 35.0%
!!! TGCAATACGATTTTGAGACA+TGG - Chr7:47274665-47274684 MsG0780038471.01.T01:CDS 35.0%
!!! TTGTCACTTTTGCAGATGTT+CGG - Chr7:47275147-47275166 MsG0780038471.01.T01:CDS 35.0%
AACAAAGCTGAGATAGAGGA+AGG + Chr7:47272716-47272735 None:intergenic 40.0%
AACTGCAAAGAAACGGTTTC+AGG + Chr7:47275348-47275367 None:intergenic 40.0%
AAGCTCCAAATGCGTCAAAT+TGG + Chr7:47271945-47271964 None:intergenic 40.0%
ACAAAGCTGAGATAGAGGAA+GGG + Chr7:47272715-47272734 None:intergenic 40.0%
AGGTTTGGAAACCGTGAAAT+GGG + Chr7:47274553-47274572 None:intergenic 40.0%
CATACTCATCTGTCGAGTTT+CGG + Chr7:47271702-47271721 None:intergenic 40.0%
CGTCAGTTTCTTCTCTTTCT+TGG - Chr7:47272062-47272081 MsG0780038471.01.T01:intron 40.0%
CTGCAGATTACCGAAAATGA+TGG - Chr7:47272390-47272409 MsG0780038471.01.T01:CDS 40.0%
GAAACTGACGTTACAAGTTG+AGG + Chr7:47272052-47272071 None:intergenic 40.0%
GATATTCTGCACCAAGCAAA+AGG - Chr7:47274216-47274235 MsG0780038471.01.T01:intron 40.0%
GCATTTAATCACTTGGTCAG+GGG + Chr7:47274957-47274976 None:intergenic 40.0%
GCTTCAAAATCCTCCAGAAT+TGG + Chr7:47271664-47271683 None:intergenic 40.0%
GTGAAAGTCAATTACTCCCT+CGG + Chr7:47273423-47273442 None:intergenic 40.0%
TAGAACTTGATGTCAAGACG+TGG - Chr7:47271413-47271432 MsG0780038471.01.T01:CDS 40.0%
TCGACCTGGACCTTAAATTA+TGG - Chr7:47272631-47272650 MsG0780038471.01.T01:intron 40.0%
TGAAAATGGCTGCAAATACC+AGG + Chr7:47274573-47274592 None:intergenic 40.0%
TGAATTTCTTCGGCTAGAAG+AGG - Chr7:47271813-47271832 MsG0780038471.01.T01:intron 40.0%
TGCGTCAAATTGGAAAACTC+CGG + Chr7:47271935-47271954 None:intergenic 40.0%
TTGCATTTCAAGCATCTCCT+GGG + Chr7:47272248-47272267 None:intergenic 40.0%
TTTGCATTTCAAGCATCTCC+TGG + Chr7:47272249-47272268 None:intergenic 40.0%
! ACACTAAGCTTGTGATTTGG+AGG + Chr7:47273147-47273166 None:intergenic 40.0%
! ATCGTGAACAACCTTTTGCT+TGG + Chr7:47274230-47274249 None:intergenic 40.0%
! CGCATTTGGAGCTTATTTGT+AGG - Chr7:47271951-47271970 MsG0780038471.01.T01:CDS 40.0%
! GACTCATGTTGATTGGAAAC+TGG - Chr7:47275218-47275237 MsG0780038471.01.T01:CDS 40.0%
! GTCTTGACATCAAGTTCTAG+TGG + Chr7:47271412-47271431 None:intergenic 40.0%
! TCTTGATGGTTGTCCAATTC+TGG - Chr7:47271648-47271667 MsG0780038471.01.T01:CDS 40.0%
! TTCTTCTGGGAATCCATGAA+AGG + Chr7:47275480-47275499 None:intergenic 40.0%
! TTTTCGTTGAATGGCGAACT+TGG + Chr7:47273052-47273071 None:intergenic 40.0%
!! AACCTTGACAAGGCATTGAA+AGG + Chr7:47273110-47273129 None:intergenic 40.0%
!! AAGGTTAACCAAGTTGGTCA+AGG - Chr7:47271735-47271754 MsG0780038471.01.T01:intron 40.0%
!! GTTGTGAAAGCATCTTCAGT+TGG + Chr7:47274442-47274461 None:intergenic 40.0%
!!! ACAAGGCGGAGTTTTTTGAT+GGG + Chr7:47274616-47274635 None:intergenic 40.0%
!!! TACAAGGCGGAGTTTTTTGA+TGG + Chr7:47274617-47274636 None:intergenic 40.0%
AAATGCAGATGGAGACTGAC+AGG - Chr7:47274368-47274387 MsG0780038471.01.T01:intron 45.0%
AATCCGGCAAACCCATTTCA+CGG - Chr7:47274539-47274558 MsG0780038471.01.T01:intron 45.0%
AATGTCTGCCTTGACCAACT+TGG + Chr7:47271746-47271765 None:intergenic 45.0%
AGCGAGCTCATTAAGACTCT+TGG - Chr7:47272736-47272755 MsG0780038471.01.T01:intron 45.0%
AGGCGTTCAGGAAAGATATC+TGG + Chr7:47272091-47272110 None:intergenic 45.0%
ATGGCTGCAAATACCAGGTT+TGG + Chr7:47274568-47274587 None:intergenic 45.0%
CAAAACTCCCTTCGCTTACA+AGG + Chr7:47274633-47274652 None:intergenic 45.0%
CAGGTTTGGAAACCGTGAAA+TGG + Chr7:47274554-47274573 None:intergenic 45.0%
CATTTCACGGTTTCCAAACC+TGG - Chr7:47274552-47274571 MsG0780038471.01.T01:intron 45.0%
CGCTAACAAAGCTGAGATAG+AGG + Chr7:47272720-47272739 None:intergenic 45.0%
CGTTCAACTTGAGAACGACA+AGG + Chr7:47271528-47271547 None:intergenic 45.0%
CTGGCATCAATAACTGCTCT+TGG - Chr7:47272798-47272817 MsG0780038471.01.T01:intron 45.0%
GATACATCGAGGTCAAGAGT+AGG + Chr7:47274508-47274527 None:intergenic 45.0%
GGCGTTCAGGAAAGATATCT+GGG + Chr7:47272090-47272109 None:intergenic 45.0%
TGAATCTCTTCGCTTCGTAG+AGG - Chr7:47275051-47275070 MsG0780038471.01.T01:intron 45.0%
TGATGGTTGTCCAATTCTGG+AGG - Chr7:47271651-47271670 MsG0780038471.01.T01:CDS 45.0%
TGCATTTCAAGCATCTCCTG+GGG + Chr7:47272247-47272266 None:intergenic 45.0%
TGGTGCAGGAGAACATACAT+TGG - Chr7:47274693-47274712 MsG0780038471.01.T01:CDS 45.0%
TTGCAGACTTCGTGCGTAAA+TGG + Chr7:47271338-47271357 None:intergenic 45.0%
! AAACCGTGAAATGGGTTTGC+CGG + Chr7:47274545-47274564 None:intergenic 45.0%
! CTGAGGCAGAACCTTTTGAT+AGG + Chr7:47271364-47271383 None:intergenic 45.0%
!! AAATGCGAAGAAAGGCGTTC+AGG + Chr7:47272103-47272122 None:intergenic 45.0%
!! TGACAGGATTAGCTCGATGT+CGG - Chr7:47274384-47274403 MsG0780038471.01.T01:intron 45.0%
!!! GATTTTGAGACATGGTTGGC+TGG - Chr7:47274673-47274692 MsG0780038471.01.T01:CDS 45.0%
!!! GGAGTTTTTTGATGGGTTGG+TGG + Chr7:47274609-47274628 None:intergenic 45.0%
AAACTCCGCCTTGTAAGCGA+AGG - Chr7:47274622-47274641 MsG0780038471.01.T01:CDS 50.0%
AACTCCCTTCGCTTACAAGG+CGG + Chr7:47274630-47274649 None:intergenic 50.0%
AACTCCGCCTTGTAAGCGAA+GGG - Chr7:47274623-47274642 MsG0780038471.01.T01:CDS 50.0%
AGGAACTAAGAGCCAGAGTG+AGG + Chr7:47274488-47274507 None:intergenic 50.0%
AGGTTCTGCCTCAGATGTGA+TGG - Chr7:47271370-47271389 MsG0780038471.01.T01:CDS 50.0%
CACAAAGATGGACCTCACTC+TGG - Chr7:47274473-47274492 MsG0780038471.01.T01:intron 50.0%
CACATGTCGCAGAGTTCACT+GGG + Chr7:47272288-47272307 None:intergenic 50.0%
CAGGGGAAATCGAGGAGTTA+CGG + Chr7:47274940-47274959 None:intergenic 50.0%
CGCCTTTCAATGCCTTGTCA+AGG - Chr7:47273105-47273124 MsG0780038471.01.T01:intron 50.0%
TCACATGTCGCAGAGTTCAC+TGG + Chr7:47272289-47272308 None:intergenic 50.0%
TCATACATCGTTGCGGCTGA+CGG + Chr7:47272872-47272891 None:intergenic 50.0%
!!! GGCGGAGTTTTTTGATGGGT+TGG + Chr7:47274612-47274631 None:intergenic 50.0%
AAGCATCTCCTGGGGAGTCA+TGG + Chr7:47272239-47272258 None:intergenic 55.0%
AATCTTCAGAGGTGGTCGCC+AGG + Chr7:47272895-47272914 None:intergenic 55.0%
AGCCGCAACGATGTATGACC+TGG - Chr7:47272874-47272893 MsG0780038471.01.T01:intron 55.0%
ATCTCCTGGGGAGTCATGGA+TGG + Chr7:47272235-47272254 None:intergenic 55.0%
CACTTGGTCAGGGGAAATCG+AGG + Chr7:47274948-47274967 None:intergenic 55.0%
CATACATCGTTGCGGCTGAC+GGG + Chr7:47272871-47272890 None:intergenic 55.0%
CGCCAGGTCATACATCGTTG+CGG + Chr7:47272879-47272898 None:intergenic 55.0%
GGCATGTCGCTGAGCTCTTT+GGG + Chr7:47275533-47275552 None:intergenic 55.0%
TGGCATGTCGCTGAGCTCTT+TGG + Chr7:47275534-47275553 None:intergenic 55.0%
TTAACTGCCGCTGCAGAACG+CGG - Chr7:47271436-47271455 MsG0780038471.01.T01:CDS 55.0%
TTCCATTCCGCGTTCTGCAG+CGG + Chr7:47271446-47271465 None:intergenic 55.0%
! TGTCGCTGAGCTCTTTGGGA+AGG + Chr7:47275529-47275548 None:intergenic 55.0%
TCCACCATCCATGACTCCCC+AGG - Chr7:47272228-47272247 MsG0780038471.01.T01:CDS 60.0%
TCCTGGGGAGTCATGGATGG+TGG + Chr7:47272232-47272251 None:intergenic 60.0%
! GAGACATGGTTGGCTGGTGC+AGG - Chr7:47274679-47274698 MsG0780038471.01.T01:CDS 60.0%
TGCCGCTGCAGAACGCGGAA+TGG - Chr7:47271441-47271460 MsG0780038471.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 47271322 47275569 47271322 ID=MsG0780038471.01;Name=MsG0780038471.01
Chr7 mRNA 47271322 47275569 47271322 ID=MsG0780038471.01.T01;Parent=MsG0780038471.01;Name=MsG0780038471.01.T01;_AED=0.26;_eAED=0.27;_QI=0|0|0|1|0.75|0.8|5|0|642
Chr7 exon 47275057 47275569 47275057 ID=MsG0780038471.01.T01:exon:4950;Parent=MsG0780038471.01.T01
Chr7 exon 47274567 47274974 47274567 ID=MsG0780038471.01.T01:exon:4949;Parent=MsG0780038471.01.T01
Chr7 exon 47272120 47272515 47272120 ID=MsG0780038471.01.T01:exon:4948;Parent=MsG0780038471.01.T01
Chr7 exon 47271819 47272022 47271819 ID=MsG0780038471.01.T01:exon:4947;Parent=MsG0780038471.01.T01
Chr7 exon 47271322 47271729 47271322 ID=MsG0780038471.01.T01:exon:4946;Parent=MsG0780038471.01.T01
Chr7 CDS 47275057 47275569 47275057 ID=MsG0780038471.01.T01:cds;Parent=MsG0780038471.01.T01
Chr7 CDS 47274567 47274974 47274567 ID=MsG0780038471.01.T01:cds;Parent=MsG0780038471.01.T01
Chr7 CDS 47272120 47272515 47272120 ID=MsG0780038471.01.T01:cds;Parent=MsG0780038471.01.T01
Chr7 CDS 47271819 47272022 47271819 ID=MsG0780038471.01.T01:cds;Parent=MsG0780038471.01.T01
Chr7 CDS 47271322 47271729 47271322 ID=MsG0780038471.01.T01:cds;Parent=MsG0780038471.01.T01
Gene Sequence

>MsG0780038471.01.T01

ATGGTATATGCTACCATTTACGCACGAAGTCTGCAAAATCCTATCAAAAGGTTCTGCCTCAGATGTGATGGTAATTCTATTTACGAGCCACTAGAACTTGATGTCAAGACGTGGTTAACTGCCGCTGCAGAACGCGGAATGGAACACCTCGATGTTCATATTTCCGATAGACATAATTTTAATTGTGTTTTTAGCTTCAAAAACCTTGTCGTTCTCAAGTTGAACGTGATACACATTACAACTACTTTATCAGTTGACCTTCCCTTGCTTAAAACTTTACATTTGAATGGAGTTTATTTTTCTCGACATTGGTTACTATTGCAAATTCTTGATGGTTGTCCAATTCTGGAGGATTTTGAAGCAAAAAATATATTTGTCCGAAACTCGACAGATGAGTATGATGAAGAGTTTAAAAGGTTAACCAAGTTGGTCAAGGCAGACATTTCCAATCTATCTGTTTTCAATGTTCCTTTAGAAGGCTTTTCTAATGTTGAATTTCTTCGGCTAGAAGAGATCTATGGATTTGTTCCGGAGTTTTCCAATTTGACGCATTTGGAGCTTATTTGTAGGAGAAACGTTAATTGGTGTTTGATATATGATGTGTTGGAGAAATGTCCTAAGCTTCAAAAACTTCTTCTTGATATGCCTCAACTTGTAACGTCAGTTTCTTCTCTTTCTTGGTTCCCAGATATCTTTCCTGAACGCCTTTCTTCGCATTTCAAAGAGTGCGCTATTGCAAATTATAGAGGGCAACATCATGAGTTGCAATTTGTACAATATATTATGTTGAATTCAACATCTTTACAGAGGGTAACAATATGCAGTCCACCATCCATGACTCCCCAGGAGATGCTTGAAATGCAAAAAGAGTTATCGTTCTTCCCAGTGAACTCTGCGACATGTGAAGTTAATTTTAAATTTATGGAGACTGACAGGATTAGCTCGATGTCGGATGAAATCCTAAGTCACATTCTCTCATTTCTTCCAACTGAAGATGCTTTCACAACAAGTCTTCTTTCACAAAGATGGACCTCACTCTGGCTCTTAGTTCCTACTCTTGACCTCGATGTATCTCGATTTATCAAATCCGGCAAACCCATTTCACGGTTTCCAAACCTGGTATTTGCAGCCATTTTCAAACGAAGTGTTTACCACCAACCCATCAAAAAACTCCGCCTTGTAAGCGAAGGGAGTTTTGTTGATGAAACTTTGCAATACGATTTTGAGACATGGTTGGCTGGTGCAGGAGAACATACATTGGAGTATCTTGAAAATTGGACATTAGCTATAATATGCCTTGTTGCATTTATAGTTTACTATGTTTTTATTGAACTTCTTAACGGTTGTCCAATTCTTGAGAATTTTGAAGCAGAAAACATAAAAATCCGTAACTCCTCGATTTCCCCTGACCAAGTGATTAAATGCTTACCAAAGTTTGTTAGAGCAAACATTTCAAACTCATCTCGATGTGATTTTCCTTTAGAACCTCTTTGTAGTGTTGAATCTCTTCGCTTCGTAGAGATGTTCGGCAACATTCCTGTTTTTCGCAATTTAACTCATGTGCATCTTGTCTATTTGACTCATGTTGATTGGAAACTGGTTTTTGATGTGTTGAAGAATTGCCCCATGCTTCAAAATTTTGACCTTGAGATGCCTCTATTGTTTACATGTATTTTTTATCATATCTCAGGGCCAAATATTTTGCCTGAAACCGTTTCTTTGCAGTTGCAAAAGTGTACTGTTAAAAATTTCATTGGAGATGTGTATGCGGTGAAATTTGTTCGATATATTATGCTGAATTCAACATGTCAACAGAATATAACAATTAGTTGTCATCCTTTCATGGATTCCCAGAAGAAGCTTGAATTACAACAAGAGTTATTGTCCTTCCCAAAGAGCTCAGCGACATGCCAAGTTTATATTAAATGA
Protein sequence

>MsG0780038471.01.T01

MVYATIYARSLQNPIKRFCLRCDGNSIYEPLELDVKTWLTAAAERGMEHLDVHISDRHNFNCVFSFKNLVVLKLNVIHITTTLSVDLPLLKTLHLNGVYFSRHWLLLQILDGCPILEDFEAKNIFVRNSTDEYDEEFKRLTKLVKADISNLSVFNVPLEGFSNVEFLRLEEIYGFVPEFSNLTHLELICRRNVNWCLIYDVLEKCPKLQKLLLDMPQLVTSVSSLSWFPDIFPERLSSHFKECAIANYRGQHHELQFVQYIMLNSTSLQRVTICSPPSMTPQEMLEMQKELSFFPVNSATCEVNFKFMETDRISSMSDEILSHILSFLPTEDAFTTSLLSQRWTSLWLLVPTLDLDVSRFIKSGKPISRFPNLVFAAIFKRSVYHQPIKKLRLVSEGSFVDETLQYDFETWLAGAGEHTLEYLENWTLAIICLVAFIVYYVFIELLNGCPILENFEAENIKIRNSSISPDQVIKCLPKFVRANISNSSRCDFPLEPLCSVESLRFVEMFGNIPVFRNLTHVHLVYLTHVDWKLVFDVLKNCPMLQNFDLEMPLLFTCIFYHISGPNILPETVSLQLQKCTVKNFIGDVYAVKFVRYIMLNSTCQQNITISCHPFMDSQKKLELQQELLSFPKSSATCQVYIK*