AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580028297.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580028297.01.T01 MTR_5g080150 50.369 407 134 6 1 367 1 379 4.32e-119 350
MsG0580028297.01.T01 MTR_2g048140 36.253 411 210 9 6 370 7 411 4.52e-74 237
MsG0580028297.01.T01 MTR_1g090907 35.766 411 212 8 6 370 7 411 2.19e-71 230
MsG0580028297.01.T01 MTR_3g448340 32.870 432 228 9 1 379 1 423 6.73e-61 203
MsG0580028297.01.T01 MTR_1g090903 30.542 406 200 10 4 370 5 367 1.95e-43 156
MsG0580028297.01.T01 MTR_3g049530 33.333 405 198 15 11 379 11 379 1.91e-42 153
MsG0580028297.01.T01 MTR_7g029260 53.226 124 56 1 247 370 21 142 1.25e-37 135
MsG0580028297.01.T01 MTR_5g066890 70.930 86 23 1 277 362 1 84 4.23e-33 119
MsG0580028297.01.T01 MTR_5g066900 74.747 99 10 1 1 99 1 84 2.65e-32 117
MsG0580028297.01.T01 MTR_5g080110 61.194 67 26 0 1 67 1 67 6.38e-18 77.8
MsG0580028297.01.T01 MTR_5g080090 49.333 75 28 2 291 364 39 104 6.59e-15 70.9
MsG0580028297.01.T01 MTR_5g080160 70.175 57 16 1 1 56 1 57 1.37e-14 71.2
MsG0580028297.01.T01 MTR_5g080160 63.265 49 18 0 322 370 61 109 8.42e-14 68.9
MsG0580028297.01.T01 MTR_8g467800 24.879 414 243 18 5 370 19 412 5.59e-13 70.5
MsG0580028297.01.T01 MTR_5g080120 55.556 54 24 0 277 330 1 54 7.35e-12 60.5
MsG0580028297.01.T01 MTR_1g021825 23.844 411 242 17 6 379 88 464 1.19e-11 66.2
MsG0580028297.01.T01 MTR_1g021825 23.844 411 242 17 6 379 17 393 1.61e-11 65.9
MsG0580028297.01.T01 MTR_0049s0110 23.782 349 191 12 6 313 8 322 5.21e-11 63.9
MsG0580028297.01.T01 MTR_0049s0110 26.738 187 108 5 6 167 8 190 5.65e-11 63.2
MsG0580028297.01.T01 MTR_0049s0110 23.782 349 191 12 6 313 8 322 6.04e-11 63.5
MsG0580028297.01.T01 MTR_8g468470 25.229 436 242 19 4 376 12 426 6.43e-11 63.9
MsG0580028297.01.T01 MTR_0049s0110 24.149 323 181 11 6 298 8 296 8.43e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580028297.01.T01 AT1G56400 29.647 425 233 11 2 370 9 423 6.40e-49 172
MsG0580028297.01.T01 AT5G54820 28.271 428 237 11 2 370 3 419 1.01e-44 160
MsG0580028297.01.T01 AT1G56400 31.313 396 223 12 2 370 9 382 1.81e-44 159
MsG0580028297.01.T01 AT3G62230 28.640 419 241 11 2 370 4 414 1.93e-41 152
MsG0580028297.01.T01 AT3G29830 26.667 420 243 11 6 370 8 417 1.37e-36 138
MsG0580028297.01.T01 AT3G29830 26.667 420 242 12 6 370 8 416 3.31e-36 137
MsG0580028297.01.T01 AT2G17305 36.449 107 66 2 273 379 125 229 1.04e-15 77.0
MsG0580028297.01.T01 AT1G61330 23.020 404 272 11 7 376 11 409 2.41e-14 74.7
MsG0580028297.01.T01 AT3G58880 23.601 411 259 14 6 369 3 405 5.99e-14 73.6

Find 44 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACACTTACTTTCTCACTTA+TGG 0.146505 5:-77959269 MsG0580028297.01.T01:CDS
CTTTGAGCATCAACAATTTC+AGG 0.151883 5:+77964398 None:intergenic
AATCGAGATTAAGAGCTTTA+AGG 0.179493 5:-77959329 MsG0580028297.01.T01:CDS
TTTCAGCTTTCGTGAGAAAA+TGG 0.248575 5:-77964367 MsG0580028297.01.T01:CDS
ATGTTATCCCAGAGATATAT+TGG 0.289862 5:-77959399 MsG0580028297.01.T01:CDS
AATAAAGCTACATGCTATTA+AGG 0.302871 5:-77964044 MsG0580028297.01.T01:CDS
ATCGAGATTAAGAGCTTTAA+GGG 0.324791 5:-77959328 MsG0580028297.01.T01:CDS
CTTCTATTCTCTCTAAAGAT+TGG 0.337117 5:-77964490 MsG0580028297.01.T01:CDS
ATACTCCCATAAACTCAAAA+TGG 0.346831 5:+77960363 None:intergenic
TAATTGAAAACCTTTAGATT+TGG 0.351022 5:+77963866 None:intergenic
ATTGCCCGAATCATTGCTTT+CGG 0.390421 5:-77964552 MsG0580028297.01.T01:CDS
TACATTCGTTTGGTCCTCTT+CGG 0.393670 5:+77960431 None:intergenic
TTCTATTCTCTCTAAAGATT+GGG 0.400740 5:-77964489 MsG0580028297.01.T01:CDS
TTTGACCAATTGTGAAAAGT+TGG 0.408885 5:-77964017 MsG0580028297.01.T01:CDS
GAGTCAACCCAATATATCTC+TGG 0.410846 5:+77959391 None:intergenic
TGTTATCCCAGAGATATATT+GGG 0.431250 5:-77959398 MsG0580028297.01.T01:CDS
AGTAAATGCTCCAAATCTAA+AGG 0.454068 5:-77963876 MsG0580028297.01.T01:CDS
CATGCTAGGATACATTCGTT+TGG 0.463565 5:+77960421 None:intergenic
GATGGCCGAAAGCAATGATT+CGG 0.465360 5:+77964547 None:intergenic
ATTGTGAGACGCTCTAAGTA+AGG 0.466101 5:+77960320 None:intergenic
TCCCTTGAGCATCGTGGTCA+AGG 0.474795 5:-77963773 MsG0580028297.01.T01:CDS
TGATATTAAATCTCCTGCAT+TGG 0.479200 5:-77963816 MsG0580028297.01.T01:CDS
ATGGCCGAAAGCAATGATTC+GGG 0.488444 5:+77964548 None:intergenic
CGCTTCTTTGAACGGCAGAA+AGG 0.500724 5:+77964520 None:intergenic
AAAATTTCTTTGGGTTACAT+GGG 0.516495 5:-77964067 MsG0580028297.01.T01:CDS
AAATTGTTGATGCTCAAAGA+AGG 0.517077 5:-77964394 MsG0580028297.01.T01:CDS
TAAATCTCCTGCATTGGATG+AGG 0.519266 5:-77963810 MsG0580028297.01.T01:CDS
CTTTCTGCCGTTCAAAGAAG+CGG 0.527237 5:-77964519 MsG0580028297.01.T01:CDS
TTACTTTCTCACTTATGGAA+AGG 0.532032 5:-77959264 MsG0580028297.01.T01:CDS
TTGAAATGCTGGAATTCGGA+AGG 0.539765 5:-77963980 MsG0580028297.01.T01:CDS
TGCAGGAGATTTAATATCAA+CGG 0.548324 5:+77963820 None:intergenic
GTCCTTGACCACGATGCTCA+AGG 0.552550 5:+77963771 None:intergenic
GTTCTCACCGCTTCTTTGAA+CGG 0.559469 5:+77964512 None:intergenic
AGTCAACCCAATATATCTCT+GGG 0.559687 5:+77959392 None:intergenic
TATGTCATTGCTCACTCCCA+TGG 0.561333 5:+77964583 None:intergenic
GAGCATCGTGGTCAAGGACA+TGG 0.568121 5:-77963767 MsG0580028297.01.T01:CDS
AGATTAACCTCATCCAATGC+AGG 0.570665 5:+77963803 None:intergenic
AAATGCTTAACATTCATGCT+AGG 0.576352 5:+77960407 None:intergenic
TCCTTGACCACGATGCTCAA+GGG 0.583759 5:+77963772 None:intergenic
TTGTGAGACGCTCTAAGTAA+GGG 0.602951 5:+77960321 None:intergenic
AATTGTTGATGCTCAAAGAA+GGG 0.622812 5:-77964393 MsG0580028297.01.T01:CDS
ATAAGGTATTTATACCGAAG+AGG 0.646233 5:-77960445 MsG0580028297.01.T01:intron
GAACGGCAGAAAGGAAACGA+TGG 0.683061 5:+77964529 None:intergenic
AAACTCAAAATGGTGCAAAG+CGG 0.727187 5:+77960373 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGATATAAAATTAAAAACA+TGG - Chr5:77964371-77964390 MsG0580028297.01.T01:CDS 10.0%
!!! GTTTTTAATTTTATATCAAA+AGG + Chr5:77964370-77964389 None:intergenic 10.0%
!! AAAATTTCACACAAATTTAA+TGG + Chr5:77963083-77963102 None:intergenic 15.0%
!! AATTTAAGAAAAAAGACAAA+AGG + Chr5:77960185-77960204 None:intergenic 15.0%
!!! AAAGTAAACTAAAAGTATTT+TGG + Chr5:77963734-77963753 None:intergenic 15.0%
!!! ATTTTGAATGAAGAATATAT+GGG - Chr5:77959889-77959908 MsG0580028297.01.T01:intron 15.0%
!!! TATTTTGAATGAAGAATATA+TGG - Chr5:77959888-77959907 MsG0580028297.01.T01:intron 15.0%
!!! TTAGTTTACTTTATTTTGTT+GGG - Chr5:77963742-77963761 MsG0580028297.01.T01:CDS 15.0%
!!! TTTAGTTTACTTTATTTTGT+TGG - Chr5:77963741-77963760 MsG0580028297.01.T01:CDS 15.0%
!! AAAAGAAAGGAAAAGAAAAA+AGG + Chr5:77960571-77960590 None:intergenic 20.0%
!! AAAGACAAAAGGTAAAAAAA+TGG + Chr5:77960174-77960193 None:intergenic 20.0%
!! AAATAAAACTGCTTAACAAT+TGG + Chr5:77963280-77963299 None:intergenic 20.0%
!! ATCTCTATATTGTATTCATT+GGG - Chr5:77962901-77962920 MsG0580028297.01.T01:intron 20.0%
!! CTGAAACAATATATATCATA+AGG + Chr5:77959642-77959661 None:intergenic 20.0%
!! GAACAAAATGAATTTCTATT+TGG + Chr5:77963707-77963726 None:intergenic 20.0%
!! TAATAACAAATCTCAAGTTA+CGG + Chr5:77961401-77961420 None:intergenic 20.0%
!! TAATTGAAAACCTTTAGATT+TGG + Chr5:77959976-77959995 None:intergenic 20.0%
!! TATATATTCAAGTCATGTAA+AGG + Chr5:77963304-77963323 None:intergenic 20.0%
!! TCACTCAAAAAAATTTCTTT+GGG - Chr5:77959763-77959782 MsG0580028297.01.T01:intron 20.0%
!! TTCACTCAAAAAAATTTCTT+TGG - Chr5:77959762-77959781 MsG0580028297.01.T01:intron 20.0%
!! TTGATTATTGTTAGTAAACA+TGG + Chr5:77962773-77962792 None:intergenic 20.0%
!! TTTATGTAATACTTACAAAC+AGG + Chr5:77963566-77963585 None:intergenic 20.0%
!!! ATACATTTGAAGTATTATTG+AGG - Chr5:77962315-77962334 MsG0580028297.01.T01:intron 20.0%
!!! GGTTACAAGTATTATTTTTA+TGG - Chr5:77963941-77963960 MsG0580028297.01.T01:CDS 20.0%
!!! TAATTGTGAATTTTTGAAGT+AGG - Chr5:77964201-77964220 MsG0580028297.01.T01:intron 20.0%
!!! TATTTTTATGGAGAAATGTT+AGG - Chr5:77963953-77963972 MsG0580028297.01.T01:CDS 20.0%
!!! TTGTTGTTGTTTATATTGTA+GGG - Chr5:77964400-77964419 MsG0580028297.01.T01:CDS 20.0%
!!! TTTGTTGTTGTTTATATTGT+AGG - Chr5:77964399-77964418 MsG0580028297.01.T01:CDS 20.0%
!!! TTTTGAATGAAGAATATATG+GGG - Chr5:77959890-77959909 MsG0580028297.01.T01:intron 20.0%
! AATAAAGCTACATGCTATTA+AGG - Chr5:77959795-77959814 MsG0580028297.01.T01:intron 25.0%
! ACAAAAAAAGATGAGTGATA+TGG + Chr5:77964119-77964138 None:intergenic 25.0%
! ATATATGGGGTTGAAAAAAT+TGG - Chr5:77959903-77959922 MsG0580028297.01.T01:intron 25.0%
! ATCGAAGATGAAATTGAATT+AGG + Chr5:77960661-77960680 None:intergenic 25.0%
! ATTCAATTTCATCTTCGATT+CGG - Chr5:77960662-77960681 MsG0580028297.01.T01:intron 25.0%
! CTACAACCATAAAAATAAGT+AGG + Chr5:77959679-77959698 None:intergenic 25.0%
! GATCTCTATATTGTATTCAT+TGG - Chr5:77962900-77962919 MsG0580028297.01.T01:intron 25.0%
! GTTAGTTATTGCTAGTAATA+AGG - Chr5:77960242-77960261 MsG0580028297.01.T01:intron 25.0%
! TCTCTATATTGTATTCATTG+GGG - Chr5:77962902-77962921 MsG0580028297.01.T01:intron 25.0%
! TTATTGAAGACAATTTGGTT+TGG - Chr5:77961437-77961456 MsG0580028297.01.T01:intron 25.0%
! TTTGGTTATTGAAGACAATT+TGG - Chr5:77961432-77961451 MsG0580028297.01.T01:intron 25.0%
!! AAAAATTTCTTTGGGTTACA+TGG - Chr5:77959771-77959790 MsG0580028297.01.T01:intron 25.0%
!! AAAATTTCTTTGGGTTACAT+GGG - Chr5:77959772-77959791 MsG0580028297.01.T01:intron 25.0%
!! CTAAAGGTTTTCAATTATCA+TGG - Chr5:77959979-77959998 MsG0580028297.01.T01:intron 25.0%
!! GAAATGGATTTCACATAAAA+TGG + Chr5:77964044-77964063 None:intergenic 25.0%
!! TTAACTGATTCAGAAAAGAA+AGG + Chr5:77960584-77960603 None:intergenic 25.0%
!! TTCTATTCTCTCTAAAGATT+GGG - Chr5:77959350-77959369 MsG0580028297.01.T01:CDS 25.0%
!!! AACTTGAGATTTGTTATTAC+TGG - Chr5:77961402-77961421 MsG0580028297.01.T01:intron 25.0%
!!! AATACCATAGCTTCTTTTTT+TGG - Chr5:77963920-77963939 MsG0580028297.01.T01:CDS 25.0%
!!! ACTTATTTTTATGGTTGTAG+TGG - Chr5:77959679-77959698 MsG0580028297.01.T01:intron 25.0%
!!! AGAAAATGGATTGAAAAACA+CGG - Chr5:77959486-77959505 MsG0580028297.01.T01:intron 25.0%
!!! CTTAGATTTCAAAGTTTTAG+AGG - Chr5:77963001-77963020 MsG0580028297.01.T01:intron 25.0%
!!! CTTATTTTTATGGTTGTAGT+GGG - Chr5:77959680-77959699 MsG0580028297.01.T01:intron 25.0%
!!! GTTTTGCCTACTTATTTTTA+TGG - Chr5:77959670-77959689 MsG0580028297.01.T01:intron 25.0%
!!! TTTACTTTATTTTGTTGGGT+TGG - Chr5:77963746-77963765 MsG0580028297.01.T01:CDS 25.0%
!!! TTTTATTGTTTTGCTCTCTT+GGG - Chr5:77962933-77962952 MsG0580028297.01.T01:intron 25.0%
!!! TTTTTATTGTTTTGCTCTCT+TGG - Chr5:77962932-77962951 MsG0580028297.01.T01:intron 25.0%
!!! TTTTTTGAAATGCTGGAATT+CGG - Chr5:77959855-77959874 MsG0580028297.01.T01:intron 25.0%
!!! TTTTTTTTCGTCAATGAGTT+TGG - Chr5:77963781-77963800 MsG0580028297.01.T01:CDS 25.0%
AAATGCTTAACATTCATGCT+AGG + Chr5:77963435-77963454 None:intergenic 30.0%
AAATTGTTGATGCTCAAAGA+AGG - Chr5:77959445-77959464 MsG0580028297.01.T01:intron 30.0%
AAGAAATGGAATCAAGGATT+TGG - Chr5:77959596-77959615 MsG0580028297.01.T01:intron 30.0%
AAGATTTGGGAAAATGATGA+CGG + Chr5:77960844-77960863 None:intergenic 30.0%
AATCGAGATTAAGAGCTTTA+AGG - Chr5:77964510-77964529 MsG0580028297.01.T01:CDS 30.0%
AATTGTTGATGCTCAAAGAA+GGG - Chr5:77959446-77959465 MsG0580028297.01.T01:intron 30.0%
AGTAAATGCTCCAAATCTAA+AGG - Chr5:77959963-77959982 MsG0580028297.01.T01:intron 30.0%
ATACTCCCATAAACTCAAAA+TGG + Chr5:77963479-77963498 None:intergenic 30.0%
ATCATTCTTTGGTCAATTTC+TGG - Chr5:77960925-77960944 MsG0580028297.01.T01:intron 30.0%
ATGAGCTCACTAAAAAATTC+AGG + Chr5:77959552-77959571 None:intergenic 30.0%
ATGTGTGAAAAACTGTTTGA+AGG - Chr5:77964486-77964505 MsG0580028297.01.T01:CDS 30.0%
ATGTTATCCCAGAGATATAT+TGG - Chr5:77964440-77964459 MsG0580028297.01.T01:CDS 30.0%
ATTGAGAGTCTAAACTTACT+TGG - Chr5:77964313-77964332 MsG0580028297.01.T01:CDS 30.0%
CAAGAATCAAATCCATAACT+CGG + Chr5:77961508-77961527 None:intergenic 30.0%
CTCTATATTGTATTCATTGG+GGG - Chr5:77962903-77962922 MsG0580028297.01.T01:intron 30.0%
CTGATGAGAGAAAATATAAG+TGG + Chr5:77963809-77963828 None:intergenic 30.0%
GAGTATTAGTTACTAGTTAG+TGG - Chr5:77960264-77960283 MsG0580028297.01.T01:intron 30.0%
GTAACCAAAAAAAGAAGCTA+TGG + Chr5:77963927-77963946 None:intergenic 30.0%
TACTGCTTGAGATCAAATAT+TGG - Chr5:77962124-77962143 MsG0580028297.01.T01:intron 30.0%
TCAAAGAAAGAACAGAACAA+AGG + Chr5:77960976-77960995 None:intergenic 30.0%
TGAAATCCATTTCCAATATG+TGG - Chr5:77964051-77964070 MsG0580028297.01.T01:CDS 30.0%
TGATACCATGTTAGTAAACA+TGG + Chr5:77960404-77960423 None:intergenic 30.0%
TGATATTAAATCTCCTGCAT+TGG - Chr5:77960023-77960042 MsG0580028297.01.T01:intron 30.0%
TGCAGGAGATTTAATATCAA+CGG + Chr5:77960022-77960041 None:intergenic 30.0%
TGCTTACATATCTACTTTGT+TGG - Chr5:77962175-77962194 MsG0580028297.01.T01:intron 30.0%
TGTTATCCCAGAGATATATT+GGG - Chr5:77964441-77964460 MsG0580028297.01.T01:CDS 30.0%
TTACTTTCTCACTTATGGAA+AGG - Chr5:77964575-77964594 MsG0580028297.01.T01:CDS 30.0%
TTCGATTAGAATCTGATTTC+TGG - Chr5:77961121-77961140 MsG0580028297.01.T01:intron 30.0%
TTTGACCAATTGTGAAAAGT+TGG - Chr5:77959822-77959841 MsG0580028297.01.T01:intron 30.0%
! AATATTGGTTGGATTTGGTT+TGG - Chr5:77962139-77962158 MsG0580028297.01.T01:intron 30.0%
! ATAAGGTATTTATACCGAAG+AGG - Chr5:77963394-77963413 MsG0580028297.01.T01:intron 30.0%
! ATCGAGATTAAGAGCTTTAA+GGG - Chr5:77964511-77964530 MsG0580028297.01.T01:CDS 30.0%
! CACATCAACTACTATCTTTT+TGG - Chr5:77962473-77962492 MsG0580028297.01.T01:intron 30.0%
! CATCATTTTCCCAAATCTTA+GGG - Chr5:77960845-77960864 MsG0580028297.01.T01:intron 30.0%
! CTTCTATTCTCTCTAAAGAT+TGG - Chr5:77959349-77959368 MsG0580028297.01.T01:CDS 30.0%
! GATCAAATATTGGTTGGATT+TGG - Chr5:77962134-77962153 MsG0580028297.01.T01:intron 30.0%
! GTTTTGTGTATGATGTGATA+AGG - Chr5:77963377-77963396 MsG0580028297.01.T01:intron 30.0%
! TCATCATTTTCCCAAATCTT+AGG - Chr5:77960844-77960863 MsG0580028297.01.T01:intron 30.0%
! TTAGTGGATGCCTATAAATA+GGG - Chr5:77960280-77960299 MsG0580028297.01.T01:intron 30.0%
!! ATGTAGTCATTTTCGTTTTG+AGG - Chr5:77963660-77963679 MsG0580028297.01.T01:intron 30.0%
!! ATTTTGCAAGATGTTTCTGT+TGG - Chr5:77962384-77962403 MsG0580028297.01.T01:intron 30.0%
!! CTAACACTCACTTTTCTATT+AGG - Chr5:77963998-77964017 MsG0580028297.01.T01:CDS 30.0%
!! TTTCGTTTCGCTTTAAGAAA+TGG - Chr5:77959582-77959601 MsG0580028297.01.T01:intron 30.0%
!!! GATTTCAAAGTTTTAGAGGA+TGG - Chr5:77963005-77963024 MsG0580028297.01.T01:intron 30.0%
!!! GCATTTTAATTTCCTCTGTT+TGG - Chr5:77962511-77962530 MsG0580028297.01.T01:intron 30.0%
!!! GTTTGAGTTTTTTGAAATGC+TGG - Chr5:77959848-77959867 MsG0580028297.01.T01:intron 30.0%
!!! TGTGAATTTTTGAAGTAGGT+AGG - Chr5:77964205-77964224 MsG0580028297.01.T01:intron 30.0%
!!! TTGCACCATTTTGAGTTTAT+GGG - Chr5:77963471-77963490 MsG0580028297.01.T01:intron 30.0%
!!! TTTGCACCATTTTGAGTTTA+TGG - Chr5:77963470-77963489 MsG0580028297.01.T01:intron 30.0%
AAAAACTTCATGAACGATCC+AGG + Chr5:77961611-77961630 None:intergenic 35.0%
AAACTCAAAATGGTGCAAAG+CGG + Chr5:77963469-77963488 None:intergenic 35.0%
AATCGCAAACCCTAAGATTT+GGG + Chr5:77960857-77960876 None:intergenic 35.0%
ACAAAGTTAACACCAAACAG+AGG + Chr5:77962526-77962545 None:intergenic 35.0%
AGTAACTAACCAAAGCCATA+AGG + Chr5:77962108-77962127 None:intergenic 35.0%
AGTCAACCCAATATATCTCT+GGG + Chr5:77964450-77964469 None:intergenic 35.0%
ATAAGACAAGCTCAACAGAA+TGG + Chr5:77960785-77960804 None:intergenic 35.0%
ATCCAAGATGAAACGAAATC+AGG + Chr5:77961007-77961026 None:intergenic 35.0%
ATGAATAACCAATCCAGAAC+CGG + Chr5:77962269-77962288 None:intergenic 35.0%
CACACTTACTTTCTCACTTA+TGG - Chr5:77964570-77964589 MsG0580028297.01.T01:CDS 35.0%
CGAGTTATGGATTTGATTCT+TGG - Chr5:77961506-77961525 MsG0580028297.01.T01:intron 35.0%
CGATTGAATCGATCATTCTT+TGG - Chr5:77960914-77960933 MsG0580028297.01.T01:intron 35.0%
CTTCTTGTAGCTTCTGTTAA+TGG - Chr5:77961791-77961810 MsG0580028297.01.T01:intron 35.0%
CTTTGAGCATCAACAATTTC+AGG + Chr5:77959444-77959463 None:intergenic 35.0%
CTTTGAGTATAGTTTCTGCT+TGG - Chr5:77961933-77961952 MsG0580028297.01.T01:intron 35.0%
GCTTGAGATCAAATATTGGT+TGG - Chr5:77962128-77962147 MsG0580028297.01.T01:intron 35.0%
GGACATGAATAACAACTACA+TGG + Chr5:77963141-77963160 None:intergenic 35.0%
GTTATGGATTTGATTCTTGG+CGG - Chr5:77961509-77961528 MsG0580028297.01.T01:intron 35.0%
TATCAACGCTTAACCATCAA+TGG + Chr5:77961838-77961857 None:intergenic 35.0%
TATTGAGGTTATACATCTGC+TGG - Chr5:77962330-77962349 MsG0580028297.01.T01:intron 35.0%
TGATAAGCTTCTGTCATGAA+TGG - Chr5:77961722-77961741 MsG0580028297.01.T01:intron 35.0%
TGATTGGAAGTCTTCTCTTA+TGG - Chr5:77962422-77962441 MsG0580028297.01.T01:intron 35.0%
TTCCTGATTTCGTTTCATCT+TGG - Chr5:77961002-77961021 MsG0580028297.01.T01:intron 35.0%
TTCGGTTTCGATATCTCAAT+CGG - Chr5:77960626-77960645 MsG0580028297.01.T01:intron 35.0%
TTCTATCGATATCTCTCTCA+AGG + Chr5:77963162-77963181 None:intergenic 35.0%
TTCTCTTACCTTGAGTTTGA+GGG - Chr5:77962567-77962586 MsG0580028297.01.T01:intron 35.0%
TTTCAGCTTTCGTGAGAAAA+TGG - Chr5:77959472-77959491 MsG0580028297.01.T01:intron 35.0%
! ACACTCCAACTTTTCACAAT+TGG + Chr5:77959830-77959849 None:intergenic 35.0%
! AGATTCTGAACAACAGCTTT+TGG + Chr5:77961157-77961176 None:intergenic 35.0%
! CTTTGGTCAATTTCTGGATT+CGG - Chr5:77960931-77960950 MsG0580028297.01.T01:intron 35.0%
! GATTGGTTATTCATACTTGC+TGG - Chr5:77962275-77962294 MsG0580028297.01.T01:intron 35.0%
! GTTAGTGGATGCCTATAAAT+AGG - Chr5:77960279-77960298 MsG0580028297.01.T01:intron 35.0%
! TTCGTGTATTTTGCTTGGTT+GGG - Chr5:77962956-77962975 MsG0580028297.01.T01:intron 35.0%
! TTTGTGGTTGTGATTGATTC+CGG - Chr5:77961466-77961485 MsG0580028297.01.T01:intron 35.0%
!! ATTTTCTCTAGAAAGTGCAG+CGG + Chr5:77960461-77960480 None:intergenic 35.0%
!! CGCTTTAAGAAATGGAATCA+AGG - Chr5:77959590-77959609 MsG0580028297.01.T01:intron 35.0%
!! GTTATTACTGGCTTCTGATT+TGG - Chr5:77961414-77961433 MsG0580028297.01.T01:intron 35.0%
!! TTTGGTTTGGATGTTCTTTG+TGG - Chr5:77961450-77961469 MsG0580028297.01.T01:intron 35.0%
AAACTTGGTATCCACCTTGA+AGG - Chr5:77960428-77960447 MsG0580028297.01.T01:CDS 40.0%
AAGATTCTTCCTTCCGTTCT+CGG - Chr5:77960602-77960621 MsG0580028297.01.T01:intron 40.0%
AATAGAACGCAGTCATCAGT+AGG + Chr5:77961638-77961657 None:intergenic 40.0%
AATCGTGAACAGAATCGCAA+AGG + Chr5:77960808-77960827 None:intergenic 40.0%
ACATGGTATCAGAGCAAACT+TGG - Chr5:77960413-77960432 MsG0580028297.01.T01:CDS 40.0%
ACCATCAACAAAGCCAACAA+AGG + Chr5:77962025-77962044 None:intergenic 40.0%
AGATTAACCTCATCCAATGC+AGG + Chr5:77960039-77960058 None:intergenic 40.0%
AGTGGTTAAGCCTAGAGTTA+TGG - Chr5:77962056-77962075 MsG0580028297.01.T01:intron 40.0%
ATCCAGGAAGAACAAAACAG+AGG + Chr5:77961595-77961614 None:intergenic 40.0%
ATTGCCCGAATCATTGCTTT+CGG - Chr5:77959287-77959306 MsG0580028297.01.T01:CDS 40.0%
CAACATGCTTAACCACCATA+GGG + Chr5:77962001-77962020 None:intergenic 40.0%
CAAGCTTAACCACCTATCAA+AGG + Chr5:77961886-77961905 None:intergenic 40.0%
CATATCAACAGAACCACTTG+AGG + Chr5:77961565-77961584 None:intergenic 40.0%
CATGCTAGGATACATTCGTT+TGG + Chr5:77963421-77963440 None:intergenic 40.0%
CCATCAACAAAGCCAACAAA+GGG + Chr5:77962024-77962043 None:intergenic 40.0%
CTGAAGCAAGTAACTGCATA+CGG + Chr5:77960148-77960167 None:intergenic 40.0%
GAATCAAATCCATAACTCGG+TGG + Chr5:77961505-77961524 None:intergenic 40.0%
GAATCGCAAACCCTAAGATT+TGG + Chr5:77960858-77960877 None:intergenic 40.0%
GAGGAAACAAGTGGTTTGAT+TGG - Chr5:77962406-77962425 MsG0580028297.01.T01:intron 40.0%
GAGTCAACCCAATATATCTC+TGG + Chr5:77964451-77964470 None:intergenic 40.0%
GCTATGATCATCAAGCCATA+AGG + Chr5:77961973-77961992 None:intergenic 40.0%
GGATGCCATGTTTACTAACA+TGG - Chr5:77960396-77960415 MsG0580028297.01.T01:CDS 40.0%
GTACATCACGCCCTATTTAT+AGG + Chr5:77960293-77960312 None:intergenic 40.0%
GTTAGTAAACATGGCATCCA+TGG + Chr5:77960395-77960414 None:intergenic 40.0%
GTTCTCTTACCTTGAGTTTG+AGG - Chr5:77962566-77962585 MsG0580028297.01.T01:intron 40.0%
GTTTGTGCTTCTGTTCATGA+TGG - Chr5:77961688-77961707 MsG0580028297.01.T01:intron 40.0%
TAAATCTCCTGCATTGGATG+AGG - Chr5:77960029-77960048 MsG0580028297.01.T01:intron 40.0%
TACATTCGTTTGGTCCTCTT+CGG + Chr5:77963411-77963430 None:intergenic 40.0%
TACTGATGACTGCGTTCTAT+TGG - Chr5:77961637-77961656 MsG0580028297.01.T01:intron 40.0%
TGAATAACCAATCCAGAACC+GGG + Chr5:77962268-77962287 None:intergenic 40.0%
TGAGTATAGTTTCTGCTTGG+TGG - Chr5:77961936-77961955 MsG0580028297.01.T01:intron 40.0%
TGATGGTAGCTTCTGTTTAG+TGG - Chr5:77962038-77962057 MsG0580028297.01.T01:intron 40.0%
TGATTGCTTCTGCCTTTGAT+AGG - Chr5:77961871-77961890 MsG0580028297.01.T01:intron 40.0%
TGGGTACCACATATTGGAAA+TGG + Chr5:77964060-77964079 None:intergenic 40.0%
TTAAGCATGTTGCCCTTTGT+TGG - Chr5:77962009-77962028 MsG0580028297.01.T01:intron 40.0%
TTGAAATGCTGGAATTCGGA+AGG - Chr5:77959859-77959878 MsG0580028297.01.T01:intron 40.0%
TTTCTGTTGGAGGAAACAAG+TGG - Chr5:77962397-77962416 MsG0580028297.01.T01:intron 40.0%
! ATTGTGAGACGCTCTAAGTA+AGG + Chr5:77963522-77963541 None:intergenic 40.0%
! GAGAACTCTTAGCTTGAGTT+TGG + Chr5:77962552-77962571 None:intergenic 40.0%
! GTGGTTAAGCTTTTGCCTTA+TGG - Chr5:77961955-77961974 MsG0580028297.01.T01:intron 40.0%
! GTTCGTGTATTTTGCTTGGT+TGG - Chr5:77962955-77962974 MsG0580028297.01.T01:intron 40.0%
! TATTGGAGTTTGGTTGATGC+TGG - Chr5:77961654-77961673 MsG0580028297.01.T01:intron 40.0%
! TGGTTAAGCGTTTTGCCTTA+TGG - Chr5:77962090-77962109 MsG0580028297.01.T01:intron 40.0%
! TTGCAAGATGTTTCTGTTGG+AGG - Chr5:77962387-77962406 MsG0580028297.01.T01:intron 40.0%
! TTGGGTTCGTGTATTTTGCT+TGG - Chr5:77962951-77962970 MsG0580028297.01.T01:intron 40.0%
! TTGTGAGACGCTCTAAGTAA+GGG + Chr5:77963521-77963540 None:intergenic 40.0%
! TTGTGCTTCAGAAGCTGTTT+TGG - Chr5:77961297-77961316 MsG0580028297.01.T01:intron 40.0%
!! TGGTTGGATTTGGTTTGGTT+TGG - Chr5:77962144-77962163 MsG0580028297.01.T01:intron 40.0%
!! TTGGTTCAGAAGCTGTTTTG+TGG - Chr5:77961316-77961335 MsG0580028297.01.T01:intron 40.0%
!!! GAGCTGTTTTGGTTAGTAGT+TGG - Chr5:77962354-77962373 MsG0580028297.01.T01:intron 40.0%
AAACGACGCTTAACCATCCT+TGG + Chr5:77961767-77961786 None:intergenic 45.0%
AATAGCCTCCCTCAAACTCA+AGG + Chr5:77962578-77962597 None:intergenic 45.0%
ACTCTCTCTAACACTCGCTT+GGG + Chr5:77964094-77964113 None:intergenic 45.0%
AGCTCAACAGAATGGAGACA+CGG + Chr5:77960777-77960796 None:intergenic 45.0%
AGGAAGAACAAAACAGAGGC+TGG + Chr5:77961591-77961610 None:intergenic 45.0%
ATCGAAACCGAATCCGAGAA+CGG + Chr5:77960618-77960637 None:intergenic 45.0%
ATGGCCGAAAGCAATGATTC+GGG + Chr5:77959294-77959313 None:intergenic 45.0%
CGTATGCAGTTACTTGCTTC+AGG - Chr5:77960146-77960165 MsG0580028297.01.T01:intron 45.0%
CGTGACACTTCTTCCATTGA+TGG - Chr5:77961822-77961841 MsG0580028297.01.T01:intron 45.0%
CTTTCTGCCGTTCAAAGAAG+CGG - Chr5:77959320-77959339 MsG0580028297.01.T01:CDS 45.0%
GACTGCGTTCTATTGGAGTT+TGG - Chr5:77961644-77961663 MsG0580028297.01.T01:intron 45.0%
GAGTTATGGCTTCTGCTCAA+TGG - Chr5:77962070-77962089 MsG0580028297.01.T01:intron 45.0%
GATCTAATGCCACCGAGTTA+TGG - Chr5:77961493-77961512 MsG0580028297.01.T01:intron 45.0%
GATGGCCGAAAGCAATGATT+CGG + Chr5:77959295-77959314 None:intergenic 45.0%
GCAACATGCTTAACCACCAT+AGG + Chr5:77962002-77962021 None:intergenic 45.0%
GCAGCGGAAAATATCCTTCA+AGG + Chr5:77960445-77960464 None:intergenic 45.0%
GCGGAAAATATCCTTCAAGG+TGG + Chr5:77960442-77960461 None:intergenic 45.0%
GTAAACATGGCATCCATGGA+AGG + Chr5:77960391-77960410 None:intergenic 45.0%
GTTCTCACCGCTTCTTTGAA+CGG + Chr5:77959330-77959349 None:intergenic 45.0%
GTTGTTGTGCTTCTGTCAAG+TGG - Chr5:77961905-77961924 MsG0580028297.01.T01:intron 45.0%
TCCAATATGTGGTACCCACA+TGG - Chr5:77964062-77964081 MsG0580028297.01.T01:CDS 45.0%
TCCATGTGGGTACCACATAT+TGG + Chr5:77964066-77964085 None:intergenic 45.0%
TCTTACCTTGAGTTTGAGGG+AGG - Chr5:77962570-77962589 MsG0580028297.01.T01:intron 45.0%
TGAGCAGAAGCCATAACTCT+AGG + Chr5:77962069-77962088 None:intergenic 45.0%
TGATCATAGCTTCTGCCCTA+TGG - Chr5:77961983-77962002 MsG0580028297.01.T01:intron 45.0%
TGCTTGGTTGGGCAGTAAAA+AGG - Chr5:77962967-77962986 MsG0580028297.01.T01:intron 45.0%
TTGCTTCTGCCTTTGATAGG+TGG - Chr5:77961874-77961893 MsG0580028297.01.T01:intron 45.0%
! AGCGTTTTGCCTTATGGCTT+TGG - Chr5:77962096-77962115 MsG0580028297.01.T01:intron 45.0%
! GCTTTTCTCTCTACCTTCCA+TGG - Chr5:77960375-77960394 MsG0580028297.01.T01:CDS 45.0%
! GGTTGTGATTGATTCCGGTT+TGG - Chr5:77961471-77961490 MsG0580028297.01.T01:intron 45.0%
! GTTTTCCTTGCCTACACCTT+TGG - Chr5:77962237-77962256 MsG0580028297.01.T01:intron 45.0%
!! AGCCTCTGTTTTGTTCTTCC+TGG - Chr5:77961590-77961609 MsG0580028297.01.T01:intron 45.0%
!! CAGCTTCTGAAACATGCTTC+TGG + Chr5:77961229-77961248 None:intergenic 45.0%
!! CCCTTTGTTGGCTTTGTTGA+TGG - Chr5:77962021-77962040 MsG0580028297.01.T01:intron 45.0%
!! GTTGGTTCTGCTAGTGATGT+TGG - Chr5:77962193-77962212 MsG0580028297.01.T01:intron 45.0%
AAACCGAATCCGAGAACGGA+AGG + Chr5:77960614-77960633 None:intergenic 50.0%
ATAACCAATCCAGAACCGGG+AGG + Chr5:77962265-77962284 None:intergenic 50.0%
CACTCTCTCTAACACTCGCT+TGG + Chr5:77964095-77964114 None:intergenic 50.0%
CGCTTCTTTGAACGGCAGAA+AGG + Chr5:77959322-77959341 None:intergenic 50.0%
CGCTTGGGTGAAATCCATGT+GGG + Chr5:77964079-77964098 None:intergenic 50.0%
CGGTGGCATTAGATCCAAAC+CGG + Chr5:77961488-77961507 None:intergenic 50.0%
CTTCCTTCCGTTCTCGGATT+CGG - Chr5:77960608-77960627 MsG0580028297.01.T01:intron 50.0%
GAACGGCAGAAAGGAAACGA+TGG + Chr5:77959313-77959332 None:intergenic 50.0%
GTTGTGCTTCTGTCCAAGGA+TGG - Chr5:77961751-77961770 MsG0580028297.01.T01:intron 50.0%
TACATGGTGCAGCTACTGTG+AGG + Chr5:77963125-77963144 None:intergenic 50.0%
TCAAGCTCTTGCACCTCAAG+TGG - Chr5:77961549-77961568 MsG0580028297.01.T01:intron 50.0%
TCATAGCTTCTGCCCTATGG+TGG - Chr5:77961986-77962005 MsG0580028297.01.T01:intron 50.0%
TCCTTGACCACGATGCTCAA+GGG + Chr5:77960070-77960089 None:intergenic 50.0%
TCGCTTGGGTGAAATCCATG+TGG + Chr5:77964080-77964099 None:intergenic 50.0%
! AAGCGTTGTGCTTCTGTCCA+AGG - Chr5:77961747-77961766 MsG0580028297.01.T01:intron 50.0%
! AGGTACCAAAGGTGTAGGCA+AGG + Chr5:77962245-77962264 None:intergenic 50.0%
! CATCTGCTGGAGAGCTGTTT+TGG - Chr5:77962343-77962362 MsG0580028297.01.T01:intron 50.0%
!! GACTTTTCCCTTGAGCATCG+TGG - Chr5:77960060-77960079 MsG0580028297.01.T01:intron 50.0%
CCTACACCTTTGGTACCTCC+CGG - Chr5:77962247-77962266 MsG0580028297.01.T01:intron 55.0%
GTCCTTGACCACGATGCTCA+AGG + Chr5:77960071-77960090 None:intergenic 55.0%
! GAGCATCGTGGTCAAGGACA+TGG - Chr5:77960072-77960091 MsG0580028297.01.T01:intron 55.0%
! TCCCTTGAGCATCGTGGTCA+AGG - Chr5:77960066-77960085 MsG0580028297.01.T01:intron 55.0%
CCTTTGGTACCTCCCGGTTC+TGG - Chr5:77962253-77962272 MsG0580028297.01.T01:intron 60.0%
!! CCAGAACCGGGAGGTACCAA+AGG + Chr5:77962256-77962275 None:intergenic 60.0%
!! CCGGGAGGTACCAAAGGTGT+AGG + Chr5:77962250-77962269 None:intergenic 60.0%
!! GGTACCTCCCGGTTCTGGAT+TGG - Chr5:77962258-77962277 MsG0580028297.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr5 gene 77959258 77964603 77959258 ID=MsG0580028297.01;Name=MsG0580028297.01
Chr5 mRNA 77959258 77964603 77959258 ID=MsG0580028297.01.T01;Parent=MsG0580028297.01;Name=MsG0580028297.01.T01;_AED=0.34;_eAED=0.34;_QI=0|0|0|1|1|1|4|0|380
Chr5 exon 77964300 77964603 77964300 ID=MsG0580028297.01.T01:exon:24262;Parent=MsG0580028297.01.T01
Chr5 exon 77963715 77964199 77963715 ID=MsG0580028297.01.T01:exon:24261;Parent=MsG0580028297.01.T01
Chr5 exon 77960292 77960462 77960292 ID=MsG0580028297.01.T01:exon:24260;Parent=MsG0580028297.01.T01
Chr5 exon 77959258 77959440 77959258 ID=MsG0580028297.01.T01:exon:24259;Parent=MsG0580028297.01.T01
Chr5 CDS 77964300 77964603 77964300 ID=MsG0580028297.01.T01:cds;Parent=MsG0580028297.01.T01
Chr5 CDS 77963715 77964199 77963715 ID=MsG0580028297.01.T01:cds;Parent=MsG0580028297.01.T01
Chr5 CDS 77960292 77960462 77960292 ID=MsG0580028297.01.T01:cds;Parent=MsG0580028297.01.T01
Chr5 CDS 77959258 77959440 77959258 ID=MsG0580028297.01.T01:cds;Parent=MsG0580028297.01.T01
Gene Sequence

>MsG0580028297.01.T01

ATGGGAGTGAGCAATGACATATTGAGTTCATTGCCCGAATCATTGCTTTCGGCCATCGTTTCCTTTCTGCCGTTCAAAGAAGCGGTGAGAACTTCTATTCTCTCTAAAGATTGGGTCAATGTATACAAATCAACAAGAAAAATAGAGTTCAATGAACTCTTCTTTGTTAACGTTGATCAATCTCCTGAAATTGTTGATGCTCAAAGAAGGGCATTTTCAGCTTTCGTGAGAAAATGGATTGAAAAACACGGAGAAGATGTCATTGACAAATTCTCTTTAACAATTATGTTGCCTGAATTTTTTACAGTAGTTGTTTTGCCTACTTATTTTTATGGTTGTAGTGGGTTTGAATCTTTGAAATTGTATGCATGTAAATTTGATGCTAGTCAATGTGTTAATTTTCATTCACTCAAAAAAATTTCTTTGGGTTACATGGGAATAAAGCTACATGCTATTAAGGCACTTTTGACCAATTGTGAAAAGTTGGAGTGTTTGAGTTTTTTGAAATGCTGGAATTCGGAAGGAGATTTTATTTTGAATGAAGAATATATGGGGTTGAAAAAATTGGTTATCAATAGCTGCGATTTTAAGTTTAATATTTTTAGAGTAAATGCTCCAAATCTAAAGGTTTTCAATTATCATGGATTGATGATACTTTTTGCCGTTGATATTAAATCTCCTGCATTGGATGAGGTTAATCTTGACTTTTCCCTTGAGCATCGTGGTCAAGGACATGGTTCTTATCTTTACAAATTTTTAAAAGAGTTCTCTTCTGCTAAAATTATGACCGTATTTATACCGAAGAGGACCAAACGAATGTATCCTAGCATGAATGTTAAGCATTTGATACTGAAGACCGCTTTGCACCATTTTGAGTTTATGGGAGTATCTTTTATGCTAAGAAGCTGCCCTTACTTAGAGCGTCTCACAATTGAAATTGTTGACGAAAGACACCTGTTTGGTTATGAAGCAATGTTCAATGTTATCCCAGAGATATATTGGGTTGACTCTATAAAAGTTTACAAATGTGTGAAAAACTGTTTGAAGGAAATCGAGATTAAGAGCTTTAAGGGAACTAAAAATGAGTTGAACGTGATTACTTACTTTCTCACACTTACTTTCTCACTTATGGAAAGGTCTTGA
Protein sequence

>MsG0580028297.01.T01

MGVSNDILSSLPESLLSAIVSFLPFKEAVRTSILSKDWVNVYKSTRKIEFNELFFVNVDQSPEIVDAQRRAFSAFVRKWIEKHGEDVIDKFSLTIMLPEFFTVVVLPTYFYGCSGFESLKLYACKFDASQCVNFHSLKKISLGYMGIKLHAIKALLTNCEKLECLSFLKCWNSEGDFILNEEYMGLKKLVINSCDFKFNIFRVNAPNLKVFNYHGLMILFAVDIKSPALDEVNLDFSLEHRGQGHGSYLYKFLKEFSSAKIMTVFIPKRTKRMYPSMNVKHLILKTALHHFEFMGVSFMLRSCPYLERLTIEIVDERHLFGYEAMFNVIPEIYWVDSIKVYKCVKNCLKEIEIKSFKGTKNELNVITYFLTLTFSLMERS*