Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029020.01.T01 | AES99385.1 | 84.709 | 412 | 30 | 3 | 1 | 412 | 1 | 379 | 0 | 696 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029020.01.T01 | Q9C7X8 | 30.841 | 428 | 271 | 10 | 6 | 420 | 13 | 428 | 4.59E-60 | 207 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029020.01.T01 | G7KBT2 | 84.709 | 412 | 30 | 3 | 1 | 412 | 1 | 379 | 0.0 | 696 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029020.01.T01 | MTR_5g080150 | 84.709 | 412 | 30 | 3 | 1 | 412 | 1 | 379 | 0.0 | 696 |
| MsG0580029020.01.T01 | MTR_2g048140 | 39.355 | 465 | 265 | 10 | 4 | 465 | 5 | 455 | 8.91e-96 | 296 |
| MsG0580029020.01.T01 | MTR_3g448340 | 39.130 | 483 | 251 | 11 | 1 | 464 | 1 | 459 | 1.02e-94 | 294 |
| MsG0580029020.01.T01 | MTR_1g090907 | 38.280 | 465 | 269 | 11 | 4 | 465 | 5 | 454 | 3.17e-90 | 282 |
| MsG0580029020.01.T01 | MTR_1g090903 | 35.560 | 464 | 239 | 13 | 4 | 465 | 5 | 410 | 2.92e-70 | 229 |
| MsG0580029020.01.T01 | MTR_5g080160 | 83.495 | 103 | 17 | 0 | 364 | 466 | 58 | 160 | 2.80e-53 | 176 |
| MsG0580029020.01.T01 | MTR_5g080160 | 85.965 | 57 | 7 | 1 | 1 | 56 | 1 | 57 | 4.18e-23 | 95.9 |
| MsG0580029020.01.T01 | MTR_3g049530 | 28.310 | 491 | 247 | 12 | 1 | 463 | 1 | 414 | 3.90e-46 | 166 |
| MsG0580029020.01.T01 | MTR_7g029260 | 57.143 | 119 | 51 | 0 | 316 | 434 | 43 | 161 | 1.55e-39 | 142 |
| MsG0580029020.01.T01 | MTR_5g080110 | 82.090 | 67 | 12 | 0 | 1 | 67 | 1 | 67 | 1.23e-31 | 116 |
| MsG0580029020.01.T01 | MTR_5g066900 | 62.195 | 82 | 16 | 1 | 19 | 100 | 19 | 85 | 9.25e-25 | 97.8 |
| MsG0580029020.01.T01 | MTR_5g080090 | 66.667 | 75 | 15 | 2 | 336 | 409 | 39 | 104 | 2.00e-24 | 98.2 |
| MsG0580029020.01.T01 | MTR_5g066890 | 53.409 | 88 | 39 | 1 | 322 | 409 | 1 | 86 | 4.40e-23 | 93.6 |
| MsG0580029020.01.T01 | MTR_5g080120 | 73.214 | 56 | 9 | 1 | 322 | 371 | 1 | 56 | 2.71e-19 | 82.0 |
| MsG0580029020.01.T01 | MTR_2g047858 | 22.996 | 474 | 293 | 15 | 6 | 465 | 115 | 530 | 1.30e-17 | 85.9 |
| MsG0580029020.01.T01 | MTR_8g468470 | 24.424 | 434 | 251 | 19 | 27 | 423 | 35 | 428 | 5.09e-15 | 77.4 |
| MsG0580029020.01.T01 | MTR_1g016340 | 24.508 | 457 | 273 | 15 | 1 | 435 | 10 | 416 | 6.94e-15 | 77.0 |
| MsG0580029020.01.T01 | MTR_1g016340 | 24.508 | 457 | 273 | 15 | 1 | 435 | 15 | 421 | 7.21e-15 | 77.0 |
| MsG0580029020.01.T01 | MTR_1g071060 | 42.222 | 90 | 51 | 1 | 38 | 127 | 7 | 95 | 1.56e-14 | 69.7 |
| MsG0580029020.01.T01 | MTR_4g045900 | 23.679 | 473 | 283 | 18 | 5 | 421 | 25 | 475 | 2.34e-14 | 75.5 |
| MsG0580029020.01.T01 | MTR_1g021825 | 23.517 | 472 | 289 | 16 | 3 | 464 | 85 | 494 | 4.58e-14 | 74.7 |
| MsG0580029020.01.T01 | MTR_1g021825 | 23.517 | 472 | 289 | 16 | 3 | 464 | 14 | 423 | 6.25e-14 | 73.9 |
| MsG0580029020.01.T01 | MTR_8g015830 | 29.818 | 275 | 167 | 9 | 6 | 258 | 8 | 278 | 4.09e-12 | 68.6 |
| MsG0580029020.01.T01 | MTR_8g015830 | 29.818 | 275 | 167 | 9 | 6 | 258 | 8 | 278 | 4.21e-12 | 68.6 |
| MsG0580029020.01.T01 | MTR_0049s0110 | 25.237 | 317 | 174 | 13 | 6 | 307 | 8 | 276 | 6.88e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029020.01.T01 | AT1G56400 | 30.841 | 428 | 271 | 10 | 6 | 420 | 13 | 428 | 4.68e-61 | 207 |
| MsG0580029020.01.T01 | AT3G62230 | 31.294 | 425 | 283 | 6 | 2 | 423 | 4 | 422 | 1.41e-60 | 205 |
| MsG0580029020.01.T01 | AT3G29830 | 32.805 | 442 | 260 | 16 | 6 | 428 | 8 | 431 | 8.47e-58 | 197 |
| MsG0580029020.01.T01 | AT3G29830 | 32.506 | 443 | 261 | 16 | 6 | 428 | 8 | 432 | 2.85e-57 | 196 |
| MsG0580029020.01.T01 | AT5G54820 | 31.034 | 435 | 273 | 13 | 6 | 423 | 7 | 431 | 1.37e-54 | 189 |
| MsG0580029020.01.T01 | AT1G56400 | 28.505 | 428 | 240 | 11 | 6 | 420 | 13 | 387 | 1.33e-47 | 170 |
| MsG0580029020.01.T01 | AT2G17305 | 34.000 | 150 | 88 | 5 | 298 | 445 | 104 | 244 | 1.77e-17 | 82.8 |
| MsG0580029020.01.T01 | AT3G58860 | 24.036 | 441 | 278 | 14 | 5 | 426 | 6 | 408 | 1.65e-14 | 75.9 |
| MsG0580029020.01.T01 | AT5G44980 | 25.442 | 452 | 254 | 20 | 6 | 426 | 4 | 403 | 2.58e-14 | 75.1 |
| MsG0580029020.01.T01 | AT5G44980 | 25.442 | 452 | 254 | 20 | 6 | 426 | 4 | 403 | 2.58e-14 | 75.1 |
| MsG0580029020.01.T01 | AT1G69630 | 23.347 | 484 | 298 | 16 | 5 | 465 | 17 | 450 | 1.44e-13 | 72.8 |
| MsG0580029020.01.T01 | AT5G22730 | 24.025 | 487 | 302 | 17 | 3 | 466 | 25 | 466 | 5.12e-13 | 71.2 |
| MsG0580029020.01.T01 | AT5G22730 | 24.025 | 487 | 302 | 17 | 3 | 466 | 25 | 466 | 5.12e-13 | 71.2 |
| MsG0580029020.01.T01 | AT3G58920 | 22.047 | 508 | 308 | 13 | 5 | 465 | 1 | 467 | 6.13e-13 | 71.2 |
| MsG0580029020.01.T01 | AT1G78760 | 21.967 | 478 | 304 | 19 | 6 | 465 | 16 | 442 | 6.89e-13 | 70.9 |
| MsG0580029020.01.T01 | AT4G26340 | 23.355 | 471 | 296 | 20 | 5 | 464 | 1 | 417 | 8.55e-13 | 70.5 |
| MsG0580029020.01.T01 | AT1G66310 | 23.382 | 479 | 294 | 16 | 5 | 465 | 18 | 441 | 1.13e-12 | 70.1 |
| MsG0580029020.01.T01 | AT1G13570 | 23.690 | 477 | 286 | 16 | 1 | 464 | 1 | 412 | 1.39e-12 | 69.7 |
| MsG0580029020.01.T01 | AT1G13570 | 23.690 | 477 | 286 | 16 | 1 | 464 | 1 | 412 | 1.39e-12 | 69.7 |
| MsG0580029020.01.T01 | AT1G13780 | 25.714 | 455 | 256 | 20 | 6 | 423 | 10 | 419 | 2.21e-12 | 69.3 |
| MsG0580029020.01.T01 | AT3G50710 | 24.477 | 478 | 292 | 20 | 5 | 465 | 1 | 426 | 7.62e-12 | 67.4 |
| MsG0580029020.01.T01 | AT1G66320 | 21.901 | 484 | 287 | 18 | 11 | 465 | 35 | 456 | 1.04e-11 | 67.0 |
| MsG0580029020.01.T01 | AT1G66290 | 22.131 | 488 | 296 | 20 | 2 | 465 | 25 | 452 | 1.83e-11 | 66.2 |
| MsG0580029020.01.T01 | AT5G53635 | 22.998 | 487 | 279 | 18 | 9 | 464 | 3 | 424 | 2.74e-11 | 65.9 |
| MsG0580029020.01.T01 | AT5G27750 | 23.778 | 450 | 290 | 16 | 6 | 429 | 5 | 427 | 2.90e-11 | 65.9 |
Find 74 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAAAAGCTTCAACTAATT+TGG | 0.114713 | 5:-90469118 | MsG0580029020.01.T01:CDS |
| TATTCTGAAGGGAGAATATT+TGG | 0.151598 | 5:-90471128 | MsG0580029020.01.T01:CDS |
| TAATCGAAAACCTTCAAATT+TGG | 0.156921 | 5:+90471043 | None:intergenic |
| CAATATTTCTCTGGGATAAT+AGG | 0.157160 | 5:+90469366 | None:intergenic |
| TAATGACTGTTTGTAGTTAT+TGG | 0.192598 | 5:-90470880 | MsG0580029020.01.T01:CDS |
| TCTAAAGAAGGTTGAGATTA+AGG | 0.199622 | 5:-90469304 | MsG0580029020.01.T01:CDS |
| AATGTCCTCGCTAAATAATT+TGG | 0.202264 | 5:+90471483 | None:intergenic |
| GTTCTCACAGCATCCTTAAA+AGG | 0.209449 | 5:+90471706 | None:intergenic |
| TCCAAATTAGTTGAAGCTTT+TGG | 0.217936 | 5:+90469117 | None:intergenic |
| CTTCAATCCTTTCGAAAGAT+TGG | 0.222451 | 5:-90471684 | MsG0580029020.01.T01:CDS |
| AATCGAAAACCTTCAAATTT+GGG | 0.246156 | 5:+90471044 | None:intergenic |
| CTATTATCCCAGAGAAATAT+TGG | 0.265932 | 5:-90469365 | MsG0580029020.01.T01:CDS |
| TGTTTGTAGTTATTGGCTTC+AGG | 0.300577 | 5:-90470873 | MsG0580029020.01.T01:intron |
| ATTGATGCTCCTCTTTCTTA+AGG | 0.329843 | 5:+90469221 | None:intergenic |
| ATTCTGAAGGGAGAATATTT+GGG | 0.340385 | 5:-90471127 | MsG0580029020.01.T01:CDS |
| TGATTCCCTCAAACTCAAAT+TGG | 0.349005 | 5:+90470216 | None:intergenic |
| CTAAAGAAGGTTGAGATTAA+GGG | 0.362591 | 5:-90469303 | MsG0580029020.01.T01:CDS |
| AAGAAATGGAGTGAAAGATT+TGG | 0.363394 | 5:-90471437 | MsG0580029020.01.T01:CDS |
| AATATTTCTCTGGGATAATA+GGG | 0.369301 | 5:+90469367 | None:intergenic |
| TCACGACGGGCAGTGACATT+CGG | 0.374873 | 5:+90469165 | None:intergenic |
| TTCAATCCTTTCGAAAGATT+GGG | 0.381387 | 5:-90471683 | MsG0580029020.01.T01:CDS |
| ACTCTCCAACATTTCACAAT+TGG | 0.398161 | 5:+90471189 | None:intergenic |
| AATTAATGCCCCAAATTTGA+AGG | 0.401003 | 5:-90471053 | MsG0580029020.01.T01:CDS |
| GTATCAATCCAATATTTCTC+TGG | 0.403176 | 5:+90469357 | None:intergenic |
| ATGTCCTCGCTAAATAATTT+GGG | 0.408675 | 5:+90471484 | None:intergenic |
| ATTACTTACTTCCTCCTTCG+TGG | 0.419898 | 5:-90469249 | MsG0580029020.01.T01:CDS |
| ATTGTGAGATGCTCTAGATT+AGG | 0.421182 | 5:+90470173 | None:intergenic |
| ATTACATTCGCTATAAGAAA+TGG | 0.427802 | 5:-90471451 | MsG0580029020.01.T01:CDS |
| CACGACGGGCAGTGACATTC+GGG | 0.433847 | 5:+90469166 | None:intergenic |
| TTTAACCAATTGTGAAATGT+TGG | 0.437065 | 5:-90471194 | MsG0580029020.01.T01:CDS |
| TTGCACCAATTTGAGTTTGA+GGG | 0.443535 | 5:-90470221 | MsG0580029020.01.T01:CDS |
| GGTTGAGATTAAGGGCTTCA+AGG | 0.458222 | 5:-90469295 | MsG0580029020.01.T01:CDS |
| TCATGGGAGCGAACATTGAC+AGG | 0.460041 | 5:-90471777 | MsG0580029020.01.T01:CDS |
| TTTGCACCAATTTGAGTTTG+AGG | 0.469254 | 5:-90470222 | MsG0580029020.01.T01:CDS |
| AACTCATCTTTGTTCCATGT+TGG | 0.474451 | 5:+90471397 | None:intergenic |
| TGTTAAAGAGAATTTGTCAA+TGG | 0.474826 | 5:+90471516 | None:intergenic |
| AATTGTTTATGCTCAAAGAA+TGG | 0.477784 | 5:-90471587 | MsG0580029020.01.T01:CDS |
| GACAGGTTTAGTTTGTTGCA+TGG | 0.496324 | 5:-90471760 | MsG0580029020.01.T01:CDS |
| TTCTCACAGCATCCTTAAAA+GGG | 0.497955 | 5:+90471707 | None:intergenic |
| CTTGACTTTCCCCTTGAGCA+TGG | 0.508682 | 5:-90470965 | MsG0580029020.01.T01:CDS |
| AGTAAGTATATGTGCTATTG+AGG | 0.519257 | 5:-90471221 | MsG0580029020.01.T01:CDS |
| GTTGAGATTAAGGGCTTCAA+GGG | 0.530278 | 5:-90469294 | MsG0580029020.01.T01:CDS |
| TTCACTCAAGGAAATTTCTG+TGG | 0.533174 | 5:-90471254 | MsG0580029020.01.T01:CDS |
| TATGAAATCACATCTAAAGA+AGG | 0.534472 | 5:-90469316 | MsG0580029020.01.T01:CDS |
| GTGGAGAGGCCTTAAGAAAG+AGG | 0.537949 | 5:-90469230 | MsG0580029020.01.T01:CDS |
| TGATATTCAATCACCTGCGT+TGG | 0.537999 | 5:-90470999 | MsG0580029020.01.T01:CDS |
| GACTTTGACATCCATGCTCA+AGG | 0.539680 | 5:+90470954 | None:intergenic |
| TATCAATCCAATATTTCTCT+GGG | 0.540358 | 5:+90469358 | None:intergenic |
| AGATCTAGCTGCTTCACGAC+GGG | 0.541220 | 5:+90469152 | None:intergenic |
| CTACAAACAGTCATTACTCT+AGG | 0.543924 | 5:+90470887 | None:intergenic |
| CCTTTCGAAAGATTGGGAAA+AGG | 0.547379 | 5:-90471677 | MsG0580029020.01.T01:CDS |
| TTACTTCCTCCTTCGTGGAG+AGG | 0.550505 | 5:-90469244 | MsG0580029020.01.T01:CDS |
| TCACTCAAGGAAATTTCTGT+GGG | 0.555501 | 5:-90471253 | MsG0580029020.01.T01:CDS |
| ATCGAAAACCTTCAAATTTG+GGG | 0.556536 | 5:+90471045 | None:intergenic |
| TAGATTTCACTTCTCCAACA+TGG | 0.561576 | 5:-90471411 | MsG0580029020.01.T01:CDS |
| TTCTGAAGGGAGAATATTTG+GGG | 0.569426 | 5:-90471126 | MsG0580029020.01.T01:CDS |
| ACGTACGCGTCGTAACTTGA+AGG | 0.570375 | 5:-90470270 | MsG0580029020.01.T01:CDS |
| ACAGTCATTACTCTAGGTGA+AGG | 0.571073 | 5:+90470893 | None:intergenic |
| ACTTTGACATCCATGCTCAA+GGG | 0.586523 | 5:+90470955 | None:intergenic |
| TAAAGATGACGTGAAAGAAG+AGG | 0.589921 | 5:-90469193 | MsG0580029020.01.T01:CDS |
| AGCTCCCAAATTATTTAGCG+AGG | 0.590333 | 5:-90471488 | MsG0580029020.01.T01:CDS |
| TCTGGGATAATAGGGAACAC+TGG | 0.591347 | 5:+90469375 | None:intergenic |
| AGCATCCTTAAAAGGGAGAG+AGG | 0.598424 | 5:+90471714 | None:intergenic |
| TTAAGGCCTCTCCACGAAGG+AGG | 0.603009 | 5:+90469238 | None:intergenic |
| TGAGCATAAACAATTTCATG+AGG | 0.603453 | 5:+90471595 | None:intergenic |
| GAGCATGGATGTCAAAGTCA+TGG | 0.610495 | 5:-90470950 | MsG0580029020.01.T01:CDS |
| GATGACGTGAAAGAAGAGGC+TGG | 0.619028 | 5:-90469189 | MsG0580029020.01.T01:CDS |
| CTTTGACATCCATGCTCAAG+GGG | 0.619808 | 5:+90470956 | None:intergenic |
| CAGTCATTACTCTAGGTGAA+GGG | 0.622072 | 5:+90470894 | None:intergenic |
| TTCTTAAGGCCTCTCCACGA+AGG | 0.623712 | 5:+90469235 | None:intergenic |
| AAGATCTAGCTGCTTCACGA+CGG | 0.624699 | 5:+90469151 | None:intergenic |
| GAAAAGAAAATTTACAATCG+AGG | 0.635714 | 5:-90470299 | MsG0580029020.01.T01:intron |
| AGTTATGTTTATGAGTATAG+CGG | 0.642119 | 5:-90471337 | MsG0580029020.01.T01:CDS |
| AGATTAACTTCATCCAACGC+AGG | 0.682761 | 5:+90470986 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATACATAACAATTAAT+TGG | + | Chr5:90470343-90470362 | None:intergenic | 10.0% |
| !! | ACTATGTAAAAAAAAAAAAA+AGG | + | Chr5:90471028-90471047 | None:intergenic | 10.0% |
| !! | TAAAATATAGAAATTAACTT+GGG | - | Chr5:90471048-90471067 | MsG0580029020.01.T01:CDS | 10.0% |
| !! | TTAAAATATAGAAATTAACT+TGG | - | Chr5:90471047-90471066 | MsG0580029020.01.T01:CDS | 10.0% |
| !!! | AAATGATAAATTATTTTCTT+CGG | - | Chr5:90470506-90470525 | MsG0580029020.01.T01:intron | 10.0% |
| !! | ATTAAATTCTATATTTCATC+TGG | - | Chr5:90471420-90471439 | MsG0580029020.01.T01:CDS | 15.0% |
| !! | TAAAGACAATTATTAAGTTA+AGG | + | Chr5:90470371-90470390 | None:intergenic | 15.0% |
| !!! | AAACATTTTTAATAATTCGA+AGG | - | Chr5:90471353-90471372 | MsG0580029020.01.T01:CDS | 15.0% |
| !!! | AATCTAATTTTTTTACTCAT+TGG | - | Chr5:90471391-90471410 | MsG0580029020.01.T01:CDS | 15.0% |
| !!! | GTTTAAATTTTTATAAGTGT+TGG | - | Chr5:90469708-90469727 | MsG0580029020.01.T01:intron | 15.0% |
| !!! | GTTTTATTATGATAATTTTG+TGG | - | Chr5:90469499-90469518 | MsG0580029020.01.T01:intron | 15.0% |
| !! | AAAAAAAACAAAACAAAACG+CGG | + | Chr5:90470246-90470265 | None:intergenic | 20.0% |
| !! | AAAAAATGGATAGAAAATCA+TGG | - | Chr5:90469329-90469348 | MsG0580029020.01.T01:CDS | 20.0% |
| !! | TCAAAACAATTCAATGAAAA+AGG | + | Chr5:90470206-90470225 | None:intergenic | 20.0% |
| !! | TTAGCTGTTAAAATGATTTA+TGG | - | Chr5:90470165-90470184 | MsG0580029020.01.T01:CDS | 20.0% |
| !!! | AAGTTACATTGTATAACTTT+TGG | - | Chr5:90471000-90471019 | MsG0580029020.01.T01:CDS | 20.0% |
| !!! | AGTTACATTGTATAACTTTT+GGG | - | Chr5:90471001-90471020 | MsG0580029020.01.T01:CDS | 20.0% |
| !!! | ATAGATTTAACGTTTTTAGA+GGG | - | Chr5:90470805-90470824 | MsG0580029020.01.T01:intron | 20.0% |
| !!! | TAATTTGTATGCATTAATGT+TGG | - | Chr5:90470845-90470864 | MsG0580029020.01.T01:intron | 20.0% |
| !!! | TATAGATTTAACGTTTTTAG+AGG | - | Chr5:90470804-90470823 | MsG0580029020.01.T01:intron | 20.0% |
| !!! | TTTTGGATTTCATGAAAAAA+TGG | - | Chr5:90469315-90469334 | MsG0580029020.01.T01:CDS | 20.0% |
| ! | AAACAATTCAATGAAAAAGG+AGG | + | Chr5:90470203-90470222 | None:intergenic | 25.0% |
| ! | AACTTAAGAATAACGACAAA+AGG | + | Chr5:90470041-90470060 | None:intergenic | 25.0% |
| ! | AATCGAAAACCTTCAAATTT+GGG | + | Chr5:90469835-90469854 | None:intergenic | 25.0% |
| ! | AATTGTTTATGCTCAAAGAA+TGG | - | Chr5:90469289-90469308 | MsG0580029020.01.T01:CDS | 25.0% |
| ! | AGTTATGTTTATGAGTATAG+CGG | - | Chr5:90469539-90469558 | MsG0580029020.01.T01:intron | 25.0% |
| ! | ATTACATTCGCTATAAGAAA+TGG | - | Chr5:90469425-90469444 | MsG0580029020.01.T01:intron | 25.0% |
| ! | GAAAAGAAAATTTACAATCG+AGG | - | Chr5:90470577-90470596 | MsG0580029020.01.T01:intron | 25.0% |
| ! | TAACAGCTAAACTTAAACAT+AGG | + | Chr5:90470155-90470174 | None:intergenic | 25.0% |
| ! | TAATCGAAAACCTTCAAATT+TGG | + | Chr5:90469836-90469855 | None:intergenic | 25.0% |
| ! | TAATGACTGTTTGTAGTTAT+TGG | - | Chr5:90469996-90470015 | MsG0580029020.01.T01:intron | 25.0% |
| ! | TATCAATCCAATATTTCTCT+GGG | + | Chr5:90471521-90471540 | None:intergenic | 25.0% |
| ! | TATGAAATCACATCTAAAGA+AGG | - | Chr5:90471560-90471579 | MsG0580029020.01.T01:CDS | 25.0% |
| ! | TGTTAAAGAGAATTTGTCAA+TGG | + | Chr5:90469363-90469382 | None:intergenic | 25.0% |
| ! | TTTAACCAATTGTGAAATGT+TGG | - | Chr5:90469682-90469701 | MsG0580029020.01.T01:intron | 25.0% |
| !! | ATATTTGGGGTTGAAAAAAT+TGG | - | Chr5:90469763-90469782 | MsG0580029020.01.T01:intron | 25.0% |
| !! | GATGAAGATTTTATTCTGAA+GGG | - | Chr5:90469737-90469756 | MsG0580029020.01.T01:intron | 25.0% |
| !!! | AATATTTCTCTGGGATAATA+GGG | + | Chr5:90471512-90471531 | None:intergenic | 25.0% |
| !!! | TTTTTATAAGTGTTGGAGTT+TGG | - | Chr5:90469715-90469734 | MsG0580029020.01.T01:intron | 25.0% |
| AAGAAATGGAGTGAAAGATT+TGG | - | Chr5:90469439-90469458 | MsG0580029020.01.T01:intron | 30.0% | |
| AATATAATTCAAGTCGAACC+TGG | + | Chr5:90470428-90470447 | None:intergenic | 30.0% | |
| AATGTCCTCGCTAAATAATT+TGG | + | Chr5:90469396-90469415 | None:intergenic | 30.0% | |
| AATTAATGCCCCAAATTTGA+AGG | - | Chr5:90469823-90469842 | MsG0580029020.01.T01:intron | 30.0% | |
| ATCGAAAACCTTCAAATTTG+GGG | + | Chr5:90469834-90469853 | None:intergenic | 30.0% | |
| ATGTCCTCGCTAAATAATTT+GGG | + | Chr5:90469395-90469414 | None:intergenic | 30.0% | |
| CTAAAGAAGGTTGAGATTAA+GGG | - | Chr5:90471573-90471592 | MsG0580029020.01.T01:CDS | 30.0% | |
| CTATTATCCCAGAGAAATAT+TGG | - | Chr5:90471511-90471530 | MsG0580029020.01.T01:CDS | 30.0% | |
| GTATCAATCCAATATTTCTC+TGG | + | Chr5:90471522-90471541 | None:intergenic | 30.0% | |
| TCCAAAAGCTTCAACTAATT+TGG | - | Chr5:90471758-90471777 | MsG0580029020.01.T01:CDS | 30.0% | |
| TCGTAAAAAATGACAACACA+AGG | - | Chr5:90471120-90471139 | MsG0580029020.01.T01:CDS | 30.0% | |
| TCTAAAGAAGGTTGAGATTA+AGG | - | Chr5:90471572-90471591 | MsG0580029020.01.T01:CDS | 30.0% | |
| TGAGCATAAACAATTTCATG+AGG | + | Chr5:90469284-90469303 | None:intergenic | 30.0% | |
| TTCAATCCTTTCGAAAGATT+GGG | - | Chr5:90469193-90469212 | MsG0580029020.01.T01:CDS | 30.0% | |
| ! | AGTAAGTATATGTGCTATTG+AGG | - | Chr5:90469655-90469674 | MsG0580029020.01.T01:intron | 30.0% |
| ! | ATTCTGAAGGGAGAATATTT+GGG | - | Chr5:90469749-90469768 | MsG0580029020.01.T01:intron | 30.0% |
| ! | GGATGAAGATTTTATTCTGA+AGG | - | Chr5:90469736-90469755 | MsG0580029020.01.T01:intron | 30.0% |
| ! | GGTTAATTTTCATTCACTCA+AGG | - | Chr5:90469610-90469629 | MsG0580029020.01.T01:intron | 30.0% |
| ! | TATTCTGAAGGGAGAATATT+TGG | - | Chr5:90469748-90469767 | MsG0580029020.01.T01:intron | 30.0% |
| ! | TCCAAATTAGTTGAAGCTTT+TGG | + | Chr5:90471762-90471781 | None:intergenic | 30.0% |
| ! | TTGAAGGTTTTCGATTATCA+CGG | - | Chr5:90469839-90469858 | MsG0580029020.01.T01:intron | 30.0% |
| !! | CAATATTTCTCTGGGATAAT+AGG | + | Chr5:90471513-90471532 | None:intergenic | 30.0% |
| !! | TGATTTTTCAGCTAGTGAAA+TGG | - | Chr5:90469589-90469608 | MsG0580029020.01.T01:intron | 30.0% |
| AACTCATCTTTGTTCCATGT+TGG | + | Chr5:90469482-90469501 | None:intergenic | 35.0% | |
| AAGCAATAAAGAGAGTGAGT+TGG | - | Chr5:90471245-90471264 | MsG0580029020.01.T01:CDS | 35.0% | |
| ACCAACGTGGTATAAATTAG+TGG | + | Chr5:90471207-90471226 | None:intergenic | 35.0% | |
| ACTAATTTATACCACGTTGG+TGG | - | Chr5:90471206-90471225 | MsG0580029020.01.T01:CDS | 35.0% | |
| ACTCTCCAACATTTCACAAT+TGG | + | Chr5:90469690-90469709 | None:intergenic | 35.0% | |
| ATTCGAAGGTTATGATTGAC+TGG | - | Chr5:90471367-90471386 | MsG0580029020.01.T01:CDS | 35.0% | |
| ATTGACCCTTTAATATGACC+AGG | - | Chr5:90470407-90470426 | MsG0580029020.01.T01:intron | 35.0% | |
| ATTGATGCTCCTCTTTCTTA+AGG | + | Chr5:90471658-90471677 | None:intergenic | 35.0% | |
| CTAATTTATACCACGTTGGT+GGG | - | Chr5:90471207-90471226 | MsG0580029020.01.T01:CDS | 35.0% | |
| CTACAAACAGTCATTACTCT+AGG | + | Chr5:90469992-90470011 | None:intergenic | 35.0% | |
| CTTCAATCCTTTCGAAAGAT+TGG | - | Chr5:90469192-90469211 | MsG0580029020.01.T01:CDS | 35.0% | |
| TAAAGATGACGTGAAAGAAG+AGG | - | Chr5:90471683-90471702 | MsG0580029020.01.T01:CDS | 35.0% | |
| TAGATTTCACTTCTCCAACA+TGG | - | Chr5:90469465-90469484 | MsG0580029020.01.T01:intron | 35.0% | |
| TCAATGAAAAAGGAGGACAT+AGG | + | Chr5:90470196-90470215 | None:intergenic | 35.0% | |
| TCACTCAAGGAAATTTCTGT+GGG | - | Chr5:90469623-90469642 | MsG0580029020.01.T01:intron | 35.0% | |
| TCCACTAATTTATACCACGT+TGG | - | Chr5:90471203-90471222 | MsG0580029020.01.T01:CDS | 35.0% | |
| TCGAACCTGGTCATATTAAA+GGG | + | Chr5:90470415-90470434 | None:intergenic | 35.0% | |
| TGATTCCCTCAAACTCAAAT+TGG | + | Chr5:90470663-90470682 | None:intergenic | 35.0% | |
| TTCACTCAAGGAAATTTCTG+TGG | - | Chr5:90469622-90469641 | MsG0580029020.01.T01:intron | 35.0% | |
| TTCTCACAGCATCCTTAAAA+GGG | + | Chr5:90469172-90469191 | None:intergenic | 35.0% | |
| ! | ATTGTGAGATGCTCTAGATT+AGG | + | Chr5:90470706-90470725 | None:intergenic | 35.0% |
| ! | TGAAGGTTTTCGATTATCAC+GGG | - | Chr5:90469840-90469859 | MsG0580029020.01.T01:intron | 35.0% |
| ! | TGCTCAAAGAATGGCATTTT+TGG | - | Chr5:90469298-90469317 | MsG0580029020.01.T01:CDS | 35.0% |
| ! | TTCTGAAGGGAGAATATTTG+GGG | - | Chr5:90469750-90469769 | MsG0580029020.01.T01:intron | 35.0% |
| ! | TTGCACCAATTTGAGTTTGA+GGG | - | Chr5:90470655-90470674 | MsG0580029020.01.T01:intron | 35.0% |
| ! | TTTGCACCAATTTGAGTTTG+AGG | - | Chr5:90470654-90470673 | MsG0580029020.01.T01:intron | 35.0% |
| !! | TGTTTGTAGTTATTGGCTTC+AGG | - | Chr5:90470003-90470022 | MsG0580029020.01.T01:intron | 35.0% |
| ACAGTCATTACTCTAGGTGA+AGG | + | Chr5:90469986-90470005 | None:intergenic | 40.0% | |
| ACTTTGACATCCATGCTCAA+GGG | + | Chr5:90469924-90469943 | None:intergenic | 40.0% | |
| AGATTAACTTCATCCAACGC+AGG | + | Chr5:90469893-90469912 | None:intergenic | 40.0% | |
| AGCTCCCAAATTATTTAGCG+AGG | - | Chr5:90469388-90469407 | MsG0580029020.01.T01:intron | 40.0% | |
| AGTTGGAATGTGTATGGTAG+AGG | - | Chr5:90471262-90471281 | MsG0580029020.01.T01:CDS | 40.0% | |
| ATTACTTACTTCCTCCTTCG+TGG | - | Chr5:90471627-90471646 | MsG0580029020.01.T01:CDS | 40.0% | |
| CAGTCATTACTCTAGGTGAA+GGG | + | Chr5:90469985-90470004 | None:intergenic | 40.0% | |
| CCTTTCGAAAGATTGGGAAA+AGG | - | Chr5:90469199-90469218 | MsG0580029020.01.T01:CDS | 40.0% | |
| GTCGAACCTGGTCATATTAA+AGG | + | Chr5:90470416-90470435 | None:intergenic | 40.0% | |
| GTTCTCACAGCATCCTTAAA+AGG | + | Chr5:90469173-90469192 | None:intergenic | 40.0% | |
| GTTGAGATTAAGGGCTTCAA+GGG | - | Chr5:90471582-90471601 | MsG0580029020.01.T01:CDS | 40.0% | |
| GTTGGAATGTGTATGGTAGA+GGG | - | Chr5:90471263-90471282 | MsG0580029020.01.T01:CDS | 40.0% | |
| TGATATTCAATCACCTGCGT+TGG | - | Chr5:90469877-90469896 | MsG0580029020.01.T01:intron | 40.0% | |
| ! | AGAGTGAGTTGGAATGTGTA+TGG | - | Chr5:90471256-90471275 | MsG0580029020.01.T01:CDS | 40.0% |
| ! | CCTTTTCCCAATCTTTCGAA+AGG | + | Chr5:90469202-90469221 | None:intergenic | 40.0% |
| !! | AGAAAGTGTGTTTTCGTGGT+TGG | - | Chr5:90470285-90470304 | MsG0580029020.01.T01:CDS | 40.0% |
| !! | GACAGGTTTAGTTTGTTGCA+TGG | - | Chr5:90469116-90469135 | MsG0580029020.01.T01:CDS | 40.0% |
| AAGATCTAGCTGCTTCACGA+CGG | + | Chr5:90471728-90471747 | None:intergenic | 45.0% | |
| AGCATCCTTAAAAGGGAGAG+AGG | + | Chr5:90469165-90469184 | None:intergenic | 45.0% | |
| CTTTGACATCCATGCTCAAG+GGG | + | Chr5:90469923-90469942 | None:intergenic | 45.0% | |
| GACTTTGACATCCATGCTCA+AGG | + | Chr5:90469925-90469944 | None:intergenic | 45.0% | |
| GAGCATGGATGTCAAAGTCA+TGG | - | Chr5:90469926-90469945 | MsG0580029020.01.T01:intron | 45.0% | |
| GGTTGAGATTAAGGGCTTCA+AGG | - | Chr5:90471581-90471600 | MsG0580029020.01.T01:CDS | 45.0% | |
| TCAAATAAGTCCCACCAACG+TGG | + | Chr5:90471220-90471239 | None:intergenic | 45.0% | |
| ! | AAGTGTGTTTTCGTGGTTGG+TGG | - | Chr5:90470288-90470307 | MsG0580029020.01.T01:CDS | 45.0% |
| ! | TCTGGGATAATAGGGAACAC+TGG | + | Chr5:90471504-90471523 | None:intergenic | 45.0% |
| ! | TGTCTCCTCTCTCCCTTTTA+AGG | - | Chr5:90469157-90469176 | MsG0580029020.01.T01:CDS | 45.0% |
| !! | GCTGAGAAAGTGTGTTTTCG+TGG | - | Chr5:90470281-90470300 | MsG0580029020.01.T01:CDS | 45.0% |
| !!! | TTTTTTATTATCTTTATTAA+TGG | - | Chr5:90470540-90470559 | MsG0580029020.01.T01:intron | 5.0% |
| ACGTACGCGTCGTAACTTGA+AGG | - | Chr5:90470606-90470625 | MsG0580029020.01.T01:intron | 50.0% | |
| AGATCTAGCTGCTTCACGAC+GGG | + | Chr5:90471727-90471746 | None:intergenic | 50.0% | |
| CTTGACTTTCCCCTTGAGCA+TGG | - | Chr5:90469911-90469930 | MsG0580029020.01.T01:intron | 50.0% | |
| GATGACGTGAAAGAAGAGGC+TGG | - | Chr5:90471687-90471706 | MsG0580029020.01.T01:CDS | 50.0% | |
| GTGGAGAGGCCTTAAGAAAG+AGG | - | Chr5:90471646-90471665 | MsG0580029020.01.T01:CDS | 50.0% | |
| TTACTTCCTCCTTCGTGGAG+AGG | - | Chr5:90471632-90471651 | MsG0580029020.01.T01:CDS | 50.0% | |
| TTCTTAAGGCCTCTCCACGA+AGG | + | Chr5:90471644-90471663 | None:intergenic | 50.0% | |
| TCACGACGGGCAGTGACATT+CGG | + | Chr5:90471714-90471733 | None:intergenic | 55.0% | |
| TTAAGGCCTCTCCACGAAGG+AGG | + | Chr5:90471641-90471660 | None:intergenic | 55.0% | |
| CACGACGGGCAGTGACATTC+GGG | + | Chr5:90471713-90471732 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 90469101 | 90471797 | 90469101 | ID=MsG0580029020.01;Name=MsG0580029020.01 |
| Chr5 | mRNA | 90469101 | 90471797 | 90469101 | ID=MsG0580029020.01.T01;Parent=MsG0580029020.01;Name=MsG0580029020.01.T01;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|3|0|466 |
| Chr5 | exon | 90470874 | 90471797 | 90470874 | ID=MsG0580029020.01.T01:exon:49149;Parent=MsG0580029020.01.T01 |
| Chr5 | exon | 90470145 | 90470315 | 90470145 | ID=MsG0580029020.01.T01:exon:49148;Parent=MsG0580029020.01.T01 |
| Chr5 | exon | 90469101 | 90469406 | 90469101 | ID=MsG0580029020.01.T01:exon:49147;Parent=MsG0580029020.01.T01 |
| Chr5 | CDS | 90470874 | 90471797 | 90470874 | ID=MsG0580029020.01.T01:cds;Parent=MsG0580029020.01.T01 |
| Chr5 | CDS | 90470145 | 90470315 | 90470145 | ID=MsG0580029020.01.T01:cds;Parent=MsG0580029020.01.T01 |
| Chr5 | CDS | 90469101 | 90469406 | 90469101 | ID=MsG0580029020.01.T01:cds;Parent=MsG0580029020.01.T01 |
| Gene Sequence |
| Protein sequence |
