AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780037228.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780037228.01.T01 MTR_3g099830 52.542 236 99 5 1 224 1 235 1.11e-69 218
MsG0780037228.01.T01 MTR_7g007340 54.185 227 92 5 4 224 5 225 7.58e-66 207
MsG0780037228.01.T01 MTR_2g007400 46.212 264 97 8 1 221 1 262 1.60e-58 190
MsG0780037228.01.T01 MTR_2g005990 42.857 252 102 6 9 219 2 252 6.34e-55 180
MsG0780037228.01.T01 MTR_7g007370 45.957 235 94 7 1 225 1 212 6.92e-55 179
MsG0780037228.01.T01 MTR_2g008310 42.339 248 102 7 12 224 1 242 8.63e-47 159
MsG0780037228.01.T01 MTR_2g008320 41.473 258 108 8 5 224 44 296 4.11e-46 159
MsG0780037228.01.T01 MTR_2g007360 44.167 240 98 11 1 219 1 225 8.47e-45 154
MsG0780037228.01.T01 MTR_5g083890 39.216 255 107 7 13 219 6 260 7.42e-41 145
MsG0780037228.01.T01 MTR_7g033470 57.447 141 36 6 1 137 1 121 8.21e-40 134
MsG0780037228.01.T01 MTR_2g007450 37.037 243 108 6 6 203 9 251 1.73e-35 130
MsG0780037228.01.T01 MTR_1g107385 36.328 256 110 10 13 219 32 283 4.49e-33 124
MsG0780037228.01.T01 MTR_5g073420 37.759 241 123 7 3 219 1 238 1.95e-32 121
MsG0780037228.01.T01 MTR_7g075820 35.741 263 122 10 9 224 2 264 1.32e-31 119
MsG0780037228.01.T01 MTR_3g107120 38.610 259 104 9 13 224 9 259 7.65e-31 117
MsG0780037228.01.T01 MTR_2g007500 37.344 241 113 8 6 218 7 237 2.13e-29 112
MsG0780037228.01.T01 MTR_2g007090 39.437 213 65 6 1 204 1 158 2.25e-28 108
MsG0780037228.01.T01 MTR_3g107100 35.246 244 113 8 13 219 11 246 3.35e-28 110
MsG0780037228.01.T01 MTR_1g053025 35.628 247 117 8 12 218 1 245 9.98e-27 106
MsG0780037228.01.T01 MTR_4g098590 37.247 247 104 9 17 218 3 243 3.65e-26 104
MsG0780037228.01.T01 MTR_7g098510 34.746 236 124 7 11 220 16 247 2.07e-25 102
MsG0780037228.01.T01 MTR_7g098480 38.261 230 117 7 12 218 17 244 4.94e-25 102
MsG0780037228.01.T01 MTR_5g058100 33.735 249 122 8 7 221 3 242 2.46e-24 99.8
MsG0780037228.01.T01 MTR_6g011460 35.714 238 115 9 12 218 45 275 2.57e-24 100
MsG0780037228.01.T01 MTR_5g045170 34.025 241 127 6 7 220 8 243 3.13e-24 99.4
MsG0780037228.01.T01 MTR_1g041245 32.203 236 129 7 11 219 9 240 1.89e-23 97.1
MsG0780037228.01.T01 MTR_7g056287 31.513 238 130 7 13 220 3 237 2.71e-23 96.7
MsG0780037228.01.T01 MTR_3g095600 35.160 219 125 8 10 217 1 213 2.90e-23 95.5
MsG0780037228.01.T01 MTR_3g107160 32.520 246 124 10 13 222 10 249 4.00e-23 96.3
MsG0780037228.01.T01 MTR_7g083740 36.464 181 106 2 3 181 7 180 4.58e-23 95.9
MsG0780037228.01.T01 MTR_3g467400 32.669 251 121 7 12 219 2 247 4.62e-23 95.9
MsG0780037228.01.T01 MTR_7g098570 33.333 249 116 8 8 220 15 249 8.70e-23 96.3
MsG0780037228.01.T01 MTR_6g045333 35.124 242 120 9 9 218 57 293 1.04e-22 95.5
MsG0780037228.01.T01 MTR_6g022360 34.667 225 125 6 12 218 42 262 1.18e-22 95.1
MsG0780037228.01.T01 MTR_2g007460 50.505 99 31 3 1 97 1 83 3.91e-22 87.8
MsG0780037228.01.T01 MTR_7g056277 34.454 238 123 9 13 220 259 493 5.37e-22 94.4
MsG0780037228.01.T01 MTR_5g061680 35.500 200 102 6 3 179 1 196 5.48e-22 92.4
MsG0780037228.01.T01 MTR_7g056433 39.362 188 89 7 13 178 12 196 1.25e-21 92.0
MsG0780037228.01.T01 MTR_3g040700 36.170 188 93 4 12 176 42 225 1.60e-21 92.4
MsG0780037228.01.T01 MTR_3g036250 35.417 192 89 4 12 176 4 187 1.14e-20 89.4
MsG0780037228.01.T01 MTR_3g026920 30.317 221 90 5 7 182 13 214 1.55e-20 89.4
MsG0780037228.01.T01 MTR_5g058000 33.333 249 118 8 9 221 4 240 1.78e-20 89.0
MsG0780037228.01.T01 MTR_7g056447 36.464 181 92 4 13 174 9 185 5.34e-20 86.7
MsG0780037228.01.T01 MTR_8g085430 34.694 196 92 7 11 176 9 198 5.83e-20 87.0
MsG0780037228.01.T01 MTR_5g045510 31.557 244 139 7 4 223 3 242 6.96e-20 87.0
MsG0780037228.01.T01 MTR_3g023630 34.694 245 118 8 12 222 7 243 1.19e-19 86.7
MsG0780037228.01.T01 MTR_5g058350 37.931 174 87 6 12 179 7 165 2.00e-19 82.4
MsG0780037228.01.T01 MTR_0009s0080 34.335 233 122 8 16 220 21 250 3.22e-19 85.9
MsG0780037228.01.T01 MTR_2g007550 37.952 166 78 5 6 155 7 163 3.95e-19 84.7
MsG0780037228.01.T01 MTR_5g073340 30.131 229 140 6 7 225 2 220 6.23e-19 84.0
MsG0780037228.01.T01 MTR_7g032380 33.508 191 94 8 11 176 9 191 9.09e-19 84.0
MsG0780037228.01.T01 MTR_7g026500 32.530 249 117 10 11 220 12 248 1.54e-18 83.6
MsG0780037228.01.T01 MTR_4g039440 31.727 249 111 7 12 218 33 264 2.10e-18 83.2
MsG0780037228.01.T01 MTR_1g077420 34.911 169 89 7 13 162 4 170 7.24e-18 80.1
MsG0780037228.01.T01 MTR_6g022500 31.915 235 125 10 12 216 100 329 2.63e-17 80.5
MsG0780037228.01.T01 MTR_1g066830 30.738 244 124 8 10 218 5 238 2.85e-17 80.1
MsG0780037228.01.T01 MTR_8g465650 33.862 189 89 6 5 162 4 187 3.68e-17 79.3
MsG0780037228.01.T01 MTR_6g044560 30.045 223 107 5 3 178 168 388 5.31e-17 79.7
MsG0780037228.01.T01 MTR_5g073370 30.290 241 127 8 13 219 5 238 1.14e-16 78.2
MsG0780037228.01.T01 MTR_5g008950 29.646 226 126 8 17 216 3 221 2.50e-16 77.0
MsG0780037228.01.T01 MTR_3g087260 36.517 178 84 6 13 176 12 174 2.76e-16 77.4
MsG0780037228.01.T01 MTR_5g039450 31.330 233 130 7 9 222 2 223 4.45e-16 76.3
MsG0780037228.01.T01 MTR_3g108150 31.602 231 127 8 13 218 13 237 4.79e-16 76.3
MsG0780037228.01.T01 MTR_1g108820 29.707 239 134 6 11 218 6 241 5.05e-16 76.3
MsG0780037228.01.T01 MTR_1g108820 29.958 237 132 6 11 216 6 239 5.41e-16 76.3
MsG0780037228.01.T01 MTR_6g040270 29.437 231 132 5 16 218 11 238 5.67e-16 76.3
MsG0780037228.01.T01 MTR_0492s0020 31.602 231 130 6 13 222 86 309 1.17e-15 75.5
MsG0780037228.01.T01 MTR_0543s0010 31.602 231 130 6 13 222 86 309 1.20e-15 75.5
MsG0780037228.01.T01 MTR_7g034115 32.468 231 126 8 12 216 10 236 1.55e-15 75.1
MsG0780037228.01.T01 MTR_8g465380 32.979 188 91 5 5 162 4 186 2.42e-15 74.3
MsG0780037228.01.T01 MTR_2g007530 47.423 97 42 4 6 96 13 106 2.62e-15 73.9
MsG0780037228.01.T01 MTR_5g087940 34.568 162 91 5 13 162 26 184 2.64e-15 74.3
MsG0780037228.01.T01 MTR_3g019240 33.161 193 97 5 13 174 26 217 3.69e-15 73.9
MsG0780037228.01.T01 MTR_3g071850 30.081 246 139 8 5 220 16 258 5.48e-15 73.9
MsG0780037228.01.T01 MTR_3g105060 32.143 224 111 9 11 203 12 225 6.20e-15 73.2
MsG0780037228.01.T01 MTR_7g114710 32.275 189 101 6 11 177 11 194 7.89e-15 72.8
MsG0780037228.01.T01 MTR_8g468910 29.694 229 112 8 13 214 48 254 1.04e-14 72.8
MsG0780037228.01.T01 MTR_5g061410 37.725 167 87 6 16 176 8 163 1.30e-14 71.2
MsG0780037228.01.T01 MTR_5g065100 34.536 194 101 5 1 176 1 186 1.38e-14 72.4
MsG0780037228.01.T01 MTR_7g075800 26.471 272 135 8 11 222 7 273 1.44e-14 72.4
MsG0780037228.01.T01 MTR_3g107140 36.095 169 65 6 44 177 23 183 1.62e-14 70.1
MsG0780037228.01.T01 MTR_7g007080 28.400 250 135 9 13 224 4 247 2.18e-14 71.6
MsG0780037228.01.T01 MTR_6g018660 31.351 185 91 6 11 162 18 199 2.19e-14 71.6
MsG0780037228.01.T01 MTR_3g108560 30.738 244 131 10 2 223 14 241 2.38e-14 71.2
MsG0780037228.01.T01 MTR_1g038710 32.039 206 113 5 4 182 8 213 2.90e-14 71.6
MsG0780037228.01.T01 MTR_3g108560 30.738 244 131 10 2 223 14 241 3.07e-14 71.2
MsG0780037228.01.T01 MTR_4g032730 32.000 200 100 7 12 178 14 210 1.22e-13 69.7
MsG0780037228.01.T01 MTR_5g008920 29.741 232 120 7 18 217 17 237 1.35e-13 69.3
MsG0780037228.01.T01 MTR_7g084080 32.353 170 94 5 13 162 17 185 1.88e-13 68.2
MsG0780037228.01.T01 MTR_4g080787 26.000 200 116 5 13 180 19 218 2.19e-13 68.9
MsG0780037228.01.T01 MTR_7g034110 29.798 198 102 7 12 181 10 198 2.48e-13 68.6
MsG0780037228.01.T01 MTR_5g082930 41.860 86 46 2 16 97 18 103 3.05e-13 66.6
MsG0780037228.01.T01 MTR_8g058965 28.837 215 113 8 1 176 1 214 3.26e-13 68.6
MsG0780037228.01.T01 MTR_8g469020 29.952 207 103 7 11 176 5 210 3.37e-13 68.6
MsG0780037228.01.T01 MTR_4g056020 32.812 192 106 6 13 182 9 199 3.58e-13 68.2
MsG0780037228.01.T01 MTR_2g036470 31.535 241 123 10 13 218 14 247 4.23e-13 67.8
MsG0780037228.01.T01 MTR_7g056420 30.387 181 83 4 13 177 9 162 4.25e-13 68.6
MsG0780037228.01.T01 MTR_7g056430 30.387 181 83 4 13 177 9 162 4.32e-13 68.6
MsG0780037228.01.T01 MTR_3g023270 31.953 169 95 6 10 162 9 173 5.50e-13 67.4
MsG0780037228.01.T01 MTR_5g080710 31.746 189 108 5 12 181 32 218 6.37e-13 67.4
MsG0780037228.01.T01 MTR_7g032370 30.516 213 118 8 24 212 1 207 7.00e-13 67.0
MsG0780037228.01.T01 MTR_6g009020 30.055 183 88 7 12 157 15 194 7.85e-13 67.0
MsG0780037228.01.T01 MTR_4g056030 31.771 192 108 6 13 182 9 199 8.03e-13 67.4
MsG0780037228.01.T01 MTR_5g039970 28.866 194 110 5 13 182 19 208 9.50e-13 66.6
MsG0780037228.01.T01 MTR_3g463820 30.857 175 92 5 13 161 13 184 1.21e-12 65.9
MsG0780037228.01.T01 MTR_2g007100 60.000 45 18 0 12 56 1 45 1.32e-12 61.6
MsG0780037228.01.T01 MTR_1g492880 40.594 101 57 2 13 112 6 104 1.66e-12 62.4
MsG0780037228.01.T01 MTR_8g062270 26.000 200 117 4 11 179 14 213 1.70e-12 66.2
MsG0780037228.01.T01 MTR_2g103680 53.333 60 24 1 1 60 1 56 1.73e-12 62.8
MsG0780037228.01.T01 MTR_7g033990 26.923 260 139 8 1 222 1 247 1.78e-12 66.2
MsG0780037228.01.T01 MTR_5g084070 32.609 184 99 6 12 177 12 188 2.38e-12 65.9
MsG0780037228.01.T01 MTR_8g468810 32.000 200 95 12 13 178 25 217 2.48e-12 65.5
MsG0780037228.01.T01 MTR_8g468810 32.000 200 95 12 13 178 25 217 2.87e-12 65.1
MsG0780037228.01.T01 MTR_8g468810 31.156 199 98 12 13 178 25 217 3.40e-12 65.1
MsG0780037228.01.T01 MTR_3g006580 29.717 212 109 9 16 209 36 225 3.57e-12 65.1
MsG0780037228.01.T01 MTR_7g022105 30.290 241 125 9 12 217 48 280 3.70e-12 65.1
MsG0780037228.01.T01 MTR_4g093690 32.292 192 106 8 13 184 18 205 3.72e-12 64.7
MsG0780037228.01.T01 MTR_3g023470 31.176 170 94 4 13 162 15 181 3.94e-12 65.1
MsG0780037228.01.T01 MTR_7g098590 41.176 119 54 5 12 122 17 127 3.98e-12 62.0
MsG0780037228.01.T01 MTR_8g468810 31.156 199 98 12 13 178 25 217 4.65e-12 64.7
MsG0780037228.01.T01 MTR_3g036320 32.941 170 88 6 15 162 22 187 4.74e-12 64.7
MsG0780037228.01.T01 MTR_8g468810 31.156 199 98 12 13 178 25 217 4.99e-12 65.1
MsG0780037228.01.T01 MTR_4g130200 32.164 171 101 5 13 182 20 176 7.56e-12 64.3
MsG0780037228.01.T01 MTR_4g080590 27.225 191 101 4 13 176 23 202 8.86e-12 63.9
MsG0780037228.01.T01 MTR_4g080590 27.225 191 101 4 13 176 23 202 1.32e-11 63.5
MsG0780037228.01.T01 MTR_7g021630 32.500 160 97 3 13 162 17 175 1.74e-11 63.2
MsG0780037228.01.T01 MTR_7g021630 32.500 160 97 3 13 162 17 175 2.03e-11 62.8
MsG0780037228.01.T01 MTR_4g050930 31.361 169 95 4 13 161 29 196 2.58e-11 62.8
MsG0780037228.01.T01 MTR_1g492880 47.222 72 37 1 13 83 6 77 2.70e-11 58.5
MsG0780037228.01.T01 MTR_4g050930 31.361 169 95 4 13 161 29 196 2.78e-11 62.8
MsG0780037228.01.T01 MTR_8g062310 28.922 204 115 9 3 185 15 209 2.80e-11 62.8
MsG0780037228.01.T01 MTR_5g060570 30.539 167 98 4 13 162 17 182 3.21e-11 61.6
MsG0780037228.01.T01 MTR_3g023330 32.558 172 88 5 13 162 15 180 4.13e-11 62.0
MsG0780037228.01.T01 MTR_7g056020 29.817 218 134 7 13 218 16 226 5.56e-11 62.0
MsG0780037228.01.T01 MTR_4g134150 30.435 184 99 8 13 177 14 187 6.20e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780037228.01.T01 AT2G26860 35.079 191 93 7 12 176 1 186 2.00e-21 91.7
MsG0780037228.01.T01 AT2G26860 35.079 191 93 7 12 176 1 186 2.00e-21 91.7
MsG0780037228.01.T01 AT5G60610 34.759 187 90 7 12 176 1 177 9.80e-19 84.0
MsG0780037228.01.T01 AT5G60610 34.759 187 90 7 12 176 1 177 9.80e-19 84.0
MsG0780037228.01.T01 AT5G38590 32.821 195 92 5 12 179 1 183 9.82e-19 83.2
MsG0780037228.01.T01 AT4G00160 33.508 191 99 5 9 176 12 197 1.17e-18 84.3
MsG0780037228.01.T01 AT3G26922 29.237 236 141 5 7 218 8 241 2.33e-18 82.4
MsG0780037228.01.T01 AT3G26922 29.237 236 141 5 7 218 8 241 2.33e-18 82.4
MsG0780037228.01.T01 AT5G38590 32.821 195 92 5 12 179 1 183 2.66e-18 83.2
MsG0780037228.01.T01 AT4G26340 34.239 184 99 5 12 176 1 181 2.77e-18 83.2
MsG0780037228.01.T01 AT4G10400 33.333 189 95 5 12 176 1 182 6.49e-18 82.0
MsG0780037228.01.T01 AT4G10400 33.333 189 95 5 12 176 1 182 6.49e-18 82.0
MsG0780037228.01.T01 AT4G10400 33.333 189 95 5 12 176 1 182 6.49e-18 82.0
MsG0780037228.01.T01 AT1G16930 31.720 186 98 6 13 176 15 193 7.20e-18 82.0
MsG0780037228.01.T01 AT1G16930 31.720 186 98 6 13 176 15 193 7.20e-18 82.0
MsG0780037228.01.T01 AT1G16930 31.720 186 98 6 13 176 15 193 7.20e-18 82.0
MsG0780037228.01.T01 AT5G56560 32.599 227 113 9 14 222 6 210 1.35e-17 81.3
MsG0780037228.01.T01 AT5G56560 34.737 190 98 7 14 185 6 187 1.68e-17 81.3
MsG0780037228.01.T01 AT4G09920 33.333 189 95 5 12 176 1 182 1.96e-17 79.3
MsG0780037228.01.T01 AT4G09920 33.333 189 95 5 12 176 1 182 1.96e-17 79.3
MsG0780037228.01.T01 AT4G09920 33.333 189 95 5 12 176 1 182 1.96e-17 79.3
MsG0780037228.01.T01 AT3G59200 33.010 206 103 8 10 189 4 200 2.05e-17 80.1
MsG0780037228.01.T01 AT4G09920 33.333 189 95 5 12 176 1 182 2.26e-17 79.7
MsG0780037228.01.T01 AT4G09920 33.333 189 95 5 12 176 1 182 2.26e-17 79.7
MsG0780037228.01.T01 AT1G60400 32.105 190 107 4 7 176 8 195 2.51e-17 80.1
MsG0780037228.01.T01 AT1G55660 31.937 191 99 4 12 176 52 237 3.53e-17 79.7
MsG0780037228.01.T01 AT1G55660 31.937 191 99 4 12 176 52 237 4.33e-17 79.7
MsG0780037228.01.T01 AT3G59200 33.010 206 103 8 10 189 4 200 4.79e-17 79.7
MsG0780037228.01.T01 AT3G52680 31.937 191 109 5 8 179 16 204 6.11e-17 79.0
MsG0780037228.01.T01 AT1G32375 31.937 191 97 6 12 176 1 184 6.21e-17 79.3
MsG0780037228.01.T01 AT1G32375 31.937 191 97 6 12 176 1 184 6.21e-17 79.3
MsG0780037228.01.T01 AT3G52680 32.105 190 108 5 9 179 17 204 9.61e-17 79.0
MsG0780037228.01.T01 AT4G14103 34.673 199 91 7 13 181 8 197 1.26e-16 78.6
MsG0780037228.01.T01 AT4G14103 34.536 194 98 6 13 181 8 197 1.62e-16 77.8
MsG0780037228.01.T01 AT4G14103 34.536 194 98 6 13 181 8 197 1.62e-16 77.8
MsG0780037228.01.T01 AT4G22280 35.676 185 94 7 12 176 1 180 1.95e-16 77.0
MsG0780037228.01.T01 AT1G69630 31.122 196 102 4 12 182 17 204 2.04e-16 77.8
MsG0780037228.01.T01 AT4G22280 35.676 185 94 7 12 176 1 180 3.15e-16 77.0
MsG0780037228.01.T01 AT5G56820 32.143 196 115 6 13 194 15 206 3.57e-16 77.0
MsG0780037228.01.T01 AT5G56370 31.915 188 93 3 12 174 1 178 4.61e-16 75.9
MsG0780037228.01.T01 AT5G56370 31.915 188 93 3 12 174 1 178 6.60e-16 76.3
MsG0780037228.01.T01 AT5G56370 31.915 188 93 3 12 174 1 178 6.60e-16 76.3
MsG0780037228.01.T01 AT4G13965 31.319 182 108 3 10 176 7 186 7.59e-16 76.3
MsG0780037228.01.T01 AT5G44980 32.642 193 105 6 13 183 4 193 9.57e-16 75.1
MsG0780037228.01.T01 AT5G44980 32.642 193 105 6 13 183 4 193 9.57e-16 75.1
MsG0780037228.01.T01 AT5G44940 32.843 204 111 9 13 193 5 205 1.01e-15 75.5
MsG0780037228.01.T01 AT4G13985 29.851 201 104 8 12 181 18 212 1.43e-15 75.5
MsG0780037228.01.T01 AT5G44980 32.642 193 105 6 13 183 4 193 1.44e-15 75.5
MsG0780037228.01.T01 AT5G44980 32.642 193 105 6 13 183 4 193 1.44e-15 75.5
MsG0780037228.01.T01 AT5G22670 33.880 183 100 6 13 178 11 189 1.69e-15 75.1
MsG0780037228.01.T01 AT3G49030 30.964 197 95 4 9 176 17 201 2.04e-15 74.7
MsG0780037228.01.T01 AT3G49030 30.964 197 95 4 9 176 17 201 2.28e-15 74.7
MsG0780037228.01.T01 AT5G38392 32.353 204 101 8 12 182 1 200 2.78e-15 72.4
MsG0780037228.01.T01 AT3G58880 34.500 200 104 7 12 186 2 199 3.01e-15 74.3
MsG0780037228.01.T01 AT1G80470 31.579 190 95 7 13 176 15 195 4.43e-15 73.9
MsG0780037228.01.T01 AT5G56440 33.158 190 102 6 12 180 1 186 4.90e-15 73.6
MsG0780037228.01.T01 AT2G42720 30.531 226 122 6 12 207 1 221 7.08e-15 73.2
MsG0780037228.01.T01 AT3G56780 32.584 178 99 4 16 176 10 183 7.38e-15 73.2
MsG0780037228.01.T01 AT3G58860 32.500 200 98 8 12 181 6 198 8.85e-15 73.2
MsG0780037228.01.T01 AT3G56780 32.402 179 100 4 15 176 9 183 9.75e-15 72.8
MsG0780037228.01.T01 AT3G56780 32.402 179 100 4 15 176 9 183 1.02e-14 72.8
MsG0780037228.01.T01 AT3G59210 30.000 210 117 7 13 197 7 211 1.38e-14 72.4
MsG0780037228.01.T01 AT3G59210 30.000 210 117 7 13 197 7 211 1.38e-14 72.4
MsG0780037228.01.T01 AT3G59210 30.000 210 117 7 13 197 7 211 1.38e-14 72.4
MsG0780037228.01.T01 AT3G59210 30.000 210 117 7 13 197 7 211 1.38e-14 72.4
MsG0780037228.01.T01 AT3G59210 30.000 210 117 7 13 197 7 211 1.38e-14 72.4
MsG0780037228.01.T01 AT5G53840 34.239 184 93 6 13 176 18 193 1.50e-14 72.4
MsG0780037228.01.T01 AT5G56810 32.275 189 99 5 13 178 15 197 1.92e-14 71.2
MsG0780037228.01.T01 AT5G22730 31.122 196 99 6 13 182 28 213 2.04e-14 71.6
MsG0780037228.01.T01 AT5G56690 31.016 187 103 5 16 178 5 189 2.09e-14 72.0
MsG0780037228.01.T01 AT5G22730 30.612 196 100 5 13 182 28 213 2.11e-14 72.0
MsG0780037228.01.T01 AT5G22730 30.612 196 100 5 13 182 28 213 2.11e-14 72.0
MsG0780037228.01.T01 AT1G66310 31.551 187 102 5 12 178 18 198 3.12e-14 71.2
MsG0780037228.01.T01 AT3G50710 29.146 199 109 5 12 184 1 193 3.53e-14 71.2
MsG0780037228.01.T01 AT5G56810 32.275 189 99 5 13 178 15 197 4.09e-14 71.2
MsG0780037228.01.T01 AT3G58920 30.244 205 102 6 12 181 1 199 4.35e-14 71.2
MsG0780037228.01.T01 AT2G04230 31.795 195 93 7 13 176 13 198 6.29e-14 70.5
MsG0780037228.01.T01 AT3G51530 30.412 194 98 5 13 182 30 210 6.47e-14 70.5
MsG0780037228.01.T01 AT4G26350 31.720 186 105 4 12 178 1 183 6.48e-14 70.5
MsG0780037228.01.T01 AT3G58980 29.515 227 137 6 12 218 1 224 8.96e-14 70.1
MsG0780037228.01.T01 AT3G49040 28.862 246 130 9 13 224 17 251 1.60e-13 68.9
MsG0780037228.01.T01 AT5G18780 30.055 183 107 5 13 178 11 189 1.61e-13 69.3
MsG0780037228.01.T01 AT5G18780 30.055 183 107 5 13 178 11 189 1.61e-13 69.3
MsG0780037228.01.T01 AT5G56380 30.653 199 105 5 12 182 1 194 1.63e-13 69.3
MsG0780037228.01.T01 AT5G56380 30.653 199 105 5 12 182 1 194 1.63e-13 69.3
MsG0780037228.01.T01 AT5G53635 28.846 208 111 5 16 198 3 198 1.64e-13 69.3
MsG0780037228.01.T01 AT5G22610 29.442 197 104 6 13 181 18 207 1.96e-13 69.3
MsG0780037228.01.T01 AT5G22610 29.442 197 104 6 13 181 18 207 1.97e-13 69.3
MsG0780037228.01.T01 AT4G14096 32.990 194 99 6 13 181 8 195 1.97e-13 69.3
MsG0780037228.01.T01 AT4G14096 32.990 194 99 6 13 181 8 195 1.97e-13 69.3
MsG0780037228.01.T01 AT5G38390 33.333 192 100 8 12 186 1 181 2.49e-13 68.9
MsG0780037228.01.T01 AT5G18780 30.055 183 107 5 13 178 11 189 2.58e-13 68.9
MsG0780037228.01.T01 AT5G18780 30.055 183 107 5 13 178 11 189 2.58e-13 68.9
MsG0780037228.01.T01 AT3G44810 34.328 201 94 8 8 176 2 196 2.89e-13 68.6
MsG0780037228.01.T01 AT1G51370 28.095 210 121 7 13 202 19 218 3.22e-13 68.2
MsG0780037228.01.T01 AT1G13780 28.713 202 111 7 5 176 2 200 3.56e-13 68.6
MsG0780037228.01.T01 AT5G44960 29.534 193 111 7 13 183 5 194 3.61e-13 68.2
MsG0780037228.01.T01 AT1G13780 28.713 202 111 7 5 176 2 200 3.65e-13 67.8
MsG0780037228.01.T01 AT1G51370 28.095 210 121 7 13 202 19 218 4.14e-13 68.2
MsG0780037228.01.T01 AT1G66300 29.442 197 112 5 4 178 17 208 4.34e-13 68.2
MsG0780037228.01.T01 AT1G51370 28.095 210 121 7 13 202 19 218 4.55e-13 68.2
MsG0780037228.01.T01 AT3G59190 30.846 201 101 8 13 181 12 206 6.18e-13 67.4
MsG0780037228.01.T01 AT2G26030 30.729 192 97 7 13 178 4 185 6.40e-13 67.8
MsG0780037228.01.T01 AT2G26030 30.729 192 97 7 13 178 4 185 6.40e-13 67.8
MsG0780037228.01.T01 AT3G26922 28.761 226 130 6 7 218 8 216 6.77e-13 66.6
MsG0780037228.01.T01 AT2G26030 30.729 192 97 7 13 178 4 185 7.02e-13 67.4
MsG0780037228.01.T01 AT5G02930 29.167 240 135 8 7 221 22 251 7.07e-13 67.4
MsG0780037228.01.T01 AT5G38386 31.288 163 99 3 12 161 1 163 7.38e-13 67.4
MsG0780037228.01.T01 AT5G38386 31.288 163 99 3 12 161 1 163 7.38e-13 67.4
MsG0780037228.01.T01 AT3G44060 29.255 188 110 3 18 183 4 190 9.49e-13 67.0
MsG0780037228.01.T01 AT5G27750 28.061 196 110 4 11 178 3 195 1.01e-12 67.0
MsG0780037228.01.T01 AT5G18770 30.303 198 112 5 4 178 15 209 1.05e-12 66.6
MsG0780037228.01.T01 AT3G42770 31.443 194 102 6 16 180 2 193 1.11e-12 67.0
MsG0780037228.01.T01 AT5G27750 28.061 196 110 4 11 178 3 195 1.34e-12 66.6
MsG0780037228.01.T01 AT3G58900 32.812 192 102 6 12 178 1 190 1.40e-12 66.2
MsG0780037228.01.T01 AT3G58900 32.812 192 102 6 12 178 1 190 1.40e-12 66.2
MsG0780037228.01.T01 AT5G18770 30.303 198 112 5 4 178 15 209 1.41e-12 66.6
MsG0780037228.01.T01 AT3G59190 30.846 201 101 8 13 181 12 206 1.50e-12 66.6
MsG0780037228.01.T01 AT3G58900 32.812 192 102 6 12 178 1 190 1.63e-12 65.9
MsG0780037228.01.T01 AT5G41840 31.707 205 103 5 9 178 10 212 1.75e-12 66.2
MsG0780037228.01.T01 AT3G26922 28.169 213 127 5 30 218 2 212 1.87e-12 65.5
MsG0780037228.01.T01 AT3G26922 28.169 213 127 5 30 218 2 212 1.87e-12 65.5
MsG0780037228.01.T01 AT5G38396 30.097 206 103 7 12 182 1 200 2.20e-12 66.2
MsG0780037228.01.T01 AT3G58900 32.812 192 102 6 12 178 1 190 2.38e-12 65.9
MsG0780037228.01.T01 AT1G58310 30.769 208 98 6 13 178 8 211 2.56e-12 65.9
MsG0780037228.01.T01 AT3G62430 30.570 193 99 6 12 176 1 186 3.58e-12 65.5
MsG0780037228.01.T01 AT1G19070 42.647 68 37 1 12 77 1 68 5.21e-12 60.5
MsG0780037228.01.T01 AT1G52650 31.795 195 105 6 12 181 1 192 5.34e-12 65.1
MsG0780037228.01.T01 AT1G26890 28.962 183 96 5 2 161 26 197 7.82e-12 63.9
MsG0780037228.01.T01 AT1G26890 28.962 183 96 5 2 161 26 197 7.82e-12 63.9
MsG0780037228.01.T01 AT1G78760 29.101 189 100 6 13 176 16 195 8.05e-12 64.3
MsG0780037228.01.T01 AT5G22700 29.167 192 107 5 13 183 43 226 8.31e-12 64.3
MsG0780037228.01.T01 AT5G22700 29.167 192 107 5 13 183 6 189 8.36e-12 64.3
MsG0780037228.01.T01 AT5G22700 29.167 192 107 5 13 183 6 189 8.36e-12 64.3
MsG0780037228.01.T01 AT5G22700 29.167 192 107 5 13 183 6 189 8.36e-12 64.3
MsG0780037228.01.T01 AT5G22700 29.167 192 107 5 13 183 6 189 8.36e-12 64.3
MsG0780037228.01.T01 AT5G22700 29.167 192 107 5 13 183 43 226 8.97e-12 64.3
MsG0780037228.01.T01 AT1G26890 28.962 183 96 5 2 161 26 197 1.06e-11 63.9
MsG0780037228.01.T01 AT3G59240 27.536 207 113 7 13 190 8 206 1.11e-11 63.9
MsG0780037228.01.T01 AT1G26890 28.962 183 96 5 2 161 26 197 1.14e-11 63.9
MsG0780037228.01.T01 AT1G26890 28.962 183 96 5 2 161 26 197 1.14e-11 63.9
MsG0780037228.01.T01 AT1G16940 28.125 192 121 7 16 193 14 202 1.91e-11 63.2
MsG0780037228.01.T01 AT3G49150 28.500 200 103 8 13 181 16 206 2.11e-11 63.2
MsG0780037228.01.T01 AT3G28410 28.962 183 108 6 11 178 26 201 2.34e-11 63.2
MsG0780037228.01.T01 AT4G13960 31.818 198 106 8 12 184 1 194 2.52e-11 62.8
MsG0780037228.01.T01 AT4G13960 31.818 198 106 8 12 184 1 194 2.52e-11 62.8
MsG0780037228.01.T01 AT5G22660 29.891 184 102 7 13 176 13 189 3.00e-11 62.4
MsG0780037228.01.T01 AT3G03030 29.897 194 109 6 12 178 1 194 4.76e-11 61.6
MsG0780037228.01.T01 AT5G22660 29.891 184 102 7 13 176 13 189 5.26e-11 62.0
MsG0780037228.01.T01 AT1G21990 30.303 198 121 3 10 190 6 203 5.71e-11 62.0
MsG0780037228.01.T01 AT3G44090 31.959 194 98 7 18 182 29 217 6.90e-11 61.6
MsG0780037228.01.T01 AT3G03040 30.846 201 97 8 12 178 1 193 7.54e-11 61.6
MsG0780037228.01.T01 AT3G03030 29.897 194 109 6 12 178 1 194 8.86e-11 61.2

Find 44 sgRNAs with CRISPR-Local

Find 49 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTTTGGAGCCAGAGTCTT+TGG 0.264331 7:+22101727 None:intergenic
GTATTCAATGGCACTTATTC+AGG 0.274105 7:-22101365 MsG0780037228.01.T01:CDS
GAATTCATCGAAGCTATCTT+TGG 0.328424 7:+22101712 None:intergenic
GCCACCGCCGTTGAAGTTTC+CGG 0.329816 7:+22101896 None:intergenic
GAGAAGAGAGAATGTGAATC+AGG 0.331415 7:+22101840 None:intergenic
CAAAGAGATGGAAGAATCTA+TGG 0.342026 7:-22101781 MsG0780037228.01.T01:CDS
TGAAGTGAGAAAGGCTTGTT+TGG 0.387146 7:+22101811 None:intergenic
TGCTCTATTCAACATTGTTA+AGG 0.388433 7:+22101334 None:intergenic
AGGTGAAGATCTTCAAGAAT+TGG 0.390384 7:+22101395 None:intergenic
CGACTTGATGATCTTGTTGT+TGG 0.391174 7:-22101605 MsG0780037228.01.T01:CDS
ACATTTGAAATTGCTTCCAT+TGG 0.395767 7:+22101290 None:intergenic
CCGTAACATAATGTCTTTGC+CGG 0.396509 7:-22101915 None:intergenic
GTACATGTAAGGATAGAATA+AGG 0.396932 7:+22101566 None:intergenic
CTTCAATTCTTTCAAAGAGA+TGG 0.401205 7:-22101793 MsG0780037228.01.T01:CDS
TGCCATTGAATACTTCAAAT+AGG 0.408202 7:+22101375 None:intergenic
AGATAGGTTCAACAATTTAC+CGG 0.411243 7:-22101870 MsG0780037228.01.T01:CDS
TGAAAGAATTGAAGTGAGAA+AGG 0.416065 7:+22101802 None:intergenic
CAACGGCGGTGGCCGTAGAT+AGG 0.421887 7:-22101886 MsG0780037228.01.T01:CDS
CACCTATTTGAAGTATTCAA+TGG 0.423319 7:-22101377 MsG0780037228.01.T01:CDS
GCTTCGATGAATTCTACATC+TGG 0.425239 7:+22101749 None:intergenic
TTCCATTGGAATATTACATT+CGG 0.440147 7:+22101304 None:intergenic
GCCGGAAACTTCAACGGCGG+TGG 0.459422 7:-22101897 MsG0780037228.01.T01:CDS
TTCTATCCACAGTTTCATCC+TGG 0.492680 7:-22101648 MsG0780037228.01.T01:CDS
ATGAATAATGTTCAACGTCC+AGG 0.497274 7:+22101630 None:intergenic
TCAATGGCACTTATTCAGGC+TGG 0.497325 7:-22101361 MsG0780037228.01.T01:CDS
CGTAATGTTTGTCAAACGTA+GGG 0.498405 7:+22101460 None:intergenic
GTCTTTGCCGGAAACTTCAA+CGG 0.512839 7:-22101903 MsG0780037228.01.T01:CDS
TTCATCGAAGCCAAAGACTC+TGG 0.520622 7:-22101737 MsG0780037228.01.T01:CDS
CAACACGTGTTGTACATGTA+AGG 0.523319 7:+22101555 None:intergenic
GTGAGAAAGGCTTGTTTGGT+GGG 0.528660 7:+22101815 None:intergenic
TTCTACGCATAAGACAATCC+AGG 0.528745 7:-22101262 MsG0780037228.01.T01:CDS
AGTGAGAAAGGCTTGTTTGG+TGG 0.554557 7:+22101814 None:intergenic
TTGCGCTCGCAAGAAGCCGC+AGG 0.554770 7:-22101677 MsG0780037228.01.T01:CDS
GGATAGAATAAGGCAATTCG+AGG 0.559413 7:+22101576 None:intergenic
TAAATTGTTGAACCTATCTA+CGG 0.567457 7:+22101874 None:intergenic
GAGGGTAATCTTAAGCGAAA+AGG 0.570051 7:+22101491 None:intergenic
ATGTGAATCAGGATATCATC+CGG 0.576559 7:+22101851 None:intergenic
TTTGCCGGAAACTTCAACGG+CGG 0.581546 7:-22101900 MsG0780037228.01.T01:CDS
TACCGAATGTAATATTCCAA+TGG 0.596267 7:-22101306 MsG0780037228.01.T01:CDS
GATAGAATAAGGCAATTCGA+GGG 0.613164 7:+22101577 None:intergenic
ACGTAATGTTTGTCAAACGT+AGG 0.618260 7:+22101459 None:intergenic
TCTACGCATAAGACAATCCA+GGG 0.623772 7:-22101261 MsG0780037228.01.T01:intron
GTGGATAGAATGATTACCTG+CGG 0.680964 7:+22101661 None:intergenic
CAACGTCCAGGATGAAACTG+TGG 0.708624 7:+22101642 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGCTCAATTTTATTGATAT+GGG - Chr7:22101566-22101585 MsG0780037228.01.T01:CDS 20.0%
!!! ATGACATTATTCATTTTAGA+TGG + Chr7:22101883-22101902 None:intergenic 20.0%
!!! TAAGCTCAATTTTATTGATA+TGG - Chr7:22101565-22101584 MsG0780037228.01.T01:CDS 20.0%
! TAAATTGTTGAACCTATCTA+CGG + Chr7:22101222-22101241 None:intergenic 25.0%
! TTCCATTGGAATATTACATT+CGG + Chr7:22101792-22101811 None:intergenic 25.0%
AGATAGGTTCAACAATTTAC+CGG - Chr7:22101223-22101242 MsG0780037228.01.T01:intron 30.0%
CATCAATAATATACATACCC+TGG + Chr7:22101852-22101871 None:intergenic 30.0%
CTTCAATTCTTTCAAAGAGA+TGG - Chr7:22101300-22101319 MsG0780037228.01.T01:CDS 30.0%
GTACATGTAAGGATAGAATA+AGG + Chr7:22101530-22101549 None:intergenic 30.0%
TACCGAATGTAATATTCCAA+TGG - Chr7:22101787-22101806 MsG0780037228.01.T01:CDS 30.0%
TGAAAGAATTGAAGTGAGAA+AGG + Chr7:22101294-22101313 None:intergenic 30.0%
TGCCATTGAATACTTCAAAT+AGG + Chr7:22101721-22101740 None:intergenic 30.0%
TGCTCTATTCAACATTGTTA+AGG + Chr7:22101762-22101781 None:intergenic 30.0%
! ACATTTGAAATTGCTTCCAT+TGG + Chr7:22101806-22101825 None:intergenic 30.0%
! CACCTATTTGAAGTATTCAA+TGG - Chr7:22101716-22101735 MsG0780037228.01.T01:CDS 30.0%
ACGTAATGTTTGTCAAACGT+AGG + Chr7:22101637-22101656 None:intergenic 35.0%
AGGTGAAGATCTTCAAGAAT+TGG + Chr7:22101701-22101720 None:intergenic 35.0%
ATGAATAATGTTCAACGTCC+AGG + Chr7:22101466-22101485 None:intergenic 35.0%
ATGTGAATCAGGATATCATC+CGG + Chr7:22101245-22101264 None:intergenic 35.0%
CAAAGAGATGGAAGAATCTA+TGG - Chr7:22101312-22101331 MsG0780037228.01.T01:CDS 35.0%
CGTAATGTTTGTCAAACGTA+GGG + Chr7:22101636-22101655 None:intergenic 35.0%
GAATTCATCGAAGCTATCTT+TGG + Chr7:22101384-22101403 None:intergenic 35.0%
GATAGAATAAGGCAATTCGA+GGG + Chr7:22101519-22101538 None:intergenic 35.0%
GTATTCAATGGCACTTATTC+AGG - Chr7:22101728-22101747 MsG0780037228.01.T01:CDS 35.0%
CAACACGTGTTGTACATGTA+AGG + Chr7:22101541-22101560 None:intergenic 40.0%
GAGAAGAGAGAATGTGAATC+AGG + Chr7:22101256-22101275 None:intergenic 40.0%
GAGGGTAATCTTAAGCGAAA+AGG + Chr7:22101605-22101624 None:intergenic 40.0%
GCTTCGATGAATTCTACATC+TGG + Chr7:22101347-22101366 None:intergenic 40.0%
GGATAGAATAAGGCAATTCG+AGG + Chr7:22101520-22101539 None:intergenic 40.0%
GTGGATAGAATGATTACCTG+CGG + Chr7:22101435-22101454 None:intergenic 40.0%
TCTACGCATAAGACAATCCA+GGG - Chr7:22101832-22101851 MsG0780037228.01.T01:CDS 40.0%
TTCTACGCATAAGACAATCC+AGG - Chr7:22101831-22101850 MsG0780037228.01.T01:CDS 40.0%
TTCTATCCACAGTTTCATCC+TGG - Chr7:22101445-22101464 MsG0780037228.01.T01:CDS 40.0%
! CGACTTGATGATCTTGTTGT+TGG - Chr7:22101488-22101507 MsG0780037228.01.T01:CDS 40.0%
! TGAAGTGAGAAAGGCTTGTT+TGG + Chr7:22101285-22101304 None:intergenic 40.0%
!!! AAACGTAGGGTTTTGAGTGA+GGG + Chr7:22101623-22101642 None:intergenic 40.0%
GTCTTTGCCGGAAACTTCAA+CGG - Chr7:22101190-22101209 MsG0780037228.01.T01:intron 45.0%
TCAATGGCACTTATTCAGGC+TGG - Chr7:22101732-22101751 MsG0780037228.01.T01:CDS 45.0%
TTCATCGAAGCCAAAGACTC+TGG - Chr7:22101356-22101375 MsG0780037228.01.T01:CDS 45.0%
! AGTGAGAAAGGCTTGTTTGG+TGG + Chr7:22101282-22101301 None:intergenic 45.0%
! GTGAGAAAGGCTTGTTTGGT+GGG + Chr7:22101281-22101300 None:intergenic 45.0%
!! ATCTTTGGAGCCAGAGTCTT+TGG + Chr7:22101369-22101388 None:intergenic 45.0%
!!! CAAACGTAGGGTTTTGAGTG+AGG + Chr7:22101624-22101643 None:intergenic 45.0%
CAACGTCCAGGATGAAACTG+TGG + Chr7:22101454-22101473 None:intergenic 50.0%
TTTGCCGGAAACTTCAACGG+CGG - Chr7:22101193-22101212 MsG0780037228.01.T01:intron 50.0%
GCCACCGCCGTTGAAGTTTC+CGG + Chr7:22101200-22101219 None:intergenic 60.0%
CAACGGCGGTGGCCGTAGAT+AGG - Chr7:22101207-22101226 MsG0780037228.01.T01:intron 65.0%
GCCGGAAACTTCAACGGCGG+TGG - Chr7:22101196-22101215 MsG0780037228.01.T01:intron 65.0%
TTGCGCTCGCAAGAAGCCGC+AGG - Chr7:22101416-22101435 MsG0780037228.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 22101188 22101927 22101188 ID=MsG0780037228.01;Name=MsG0780037228.01
Chr7 mRNA 22101188 22101927 22101188 ID=MsG0780037228.01.T01;Parent=MsG0780037228.01;Name=MsG0780037228.01.T01;_AED=0.18;_eAED=0.18;_QI=0|0|0|1|0|0.5|2|0|225
Chr7 exon 22101188 22101199 22101188 ID=MsG0780037228.01.T01:exon:5493;Parent=MsG0780037228.01.T01
Chr7 exon 22101262 22101927 22101262 ID=MsG0780037228.01.T01:exon:5492;Parent=MsG0780037228.01.T01
Chr7 CDS 22101262 22101927 22101262 ID=MsG0780037228.01.T01:cds;Parent=MsG0780037228.01.T01
Chr7 CDS 22101188 22101199 22101188 ID=MsG0780037228.01.T01:cds;Parent=MsG0780037228.01.T01
Gene Sequence

>MsG0780037228.01.T01

ATGTCTTTGCCGGAAACTTCAACGGCGGTGGCCGTAGATAGGTTCAACAATTTACCGGATGATATCCTGATTCACATTCTCTCTTCTCTTCCCACCAAACAAGCCTTTCTCACTTCAATTCTTTCAAAGAGATGGAAGAATCTATGGTGTTACGTTCCAGATGTAGAATTCATCGAAGCCAAAGACTCTGGCTCCAAAGATAGCTTCGATGAATTCGTTTACTACATATTGCGCTCGCAAGAAGCCGCAGGTAATCATTCTATCCACAGTTTCATCCTGGACGTTGAACATTATTCATCTCGACTTGATGATCTTGTTGTTGGTAGAGCCCTCGAATTGCCTTATTCTATCCTTACATGTACAACACGTGTTGTTCTTAAGCTCAATTTTATTGATATGGGTGAGAACTTTTCTCCTTTTCGCTTAAGATTACCCTCACTCAAAACCCTACGTTTGACAAACATTACGTTTGAACAAGATGATGATCTCATGATGCTTTTAGAACAATGTCCAATTCTTGAAGATCTTCACCTATTTGAAGTATTCAATGGCACTTATTCAGGCTGGAATACCTTAACAATGTTGAATAGAGCAGATGTTACCGAATGTAATATTCCAATGGAAGCAATTTCAAATGTCGAGTTTCTACGCATAAGACAATCCAGGCATTTTTTTTAA

Protein sequence

>MsG0780037228.01.T01

MSLPETSTAVAVDRFNNLPDDILIHILSSLPTKQAFLTSILSKRWKNLWCYVPDVEFIEAKDSGSKDSFDEFVYYILRSQEAAGNHSIHSFILDVEHYSSRLDDLVVGRALELPYSILTCTTRVVLKLNFIDMGENFSPFRLRLPSLKTLRLTNITFEQDDDLMMLLEQCPILEDLHLFEVFNGTYSGWNTLTMLNRADVTECNIPMEAISNVEFLRIRQSRHFF*