AlfalfaGEDB | MsG0780037249.01

M. sativa cultivar ZhongmuNo.1 / MsG0780037249.01

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037249.01.T01	RHN45152.1	68.75	176	52	2	111	283	91	266	2.33E-75	242

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037249.01.T01	Q9LXR4	30.653	199	110	7	11	186	2	195	8.21E-12	68.6

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037249.01.T01	A0A396GVN0	68.750	176	52	2	111	283	91	266	1.11e-75	242

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180006035.01	MsG0780037249.01	0.808329	3.268045e-50	1.863335e-47

PPI

Gene1	Gene2	Type
MsG0780038510.01	MsG0780037249.01	PPI
MsG0280011351.01	MsG0780037249.01	PPI
MsG0280011360.01	MsG0780037249.01	PPI
MsG0780038468.01	MsG0780037249.01	PPI
MsG0780037574.01	MsG0780037249.01	PPI
MsG0780041655.01	MsG0780037249.01	PPI
MsG0780038510.01	MsG0780037249.01	PPI
MsG0780037551.01	MsG0780037249.01	PPI
MsG0780038502.01	MsG0780037249.01	PPI
MsG0380012970.01	MsG0780037249.01	PPI
MsG0780037872.01	MsG0780037249.01	PPI
MsG0780038504.01	MsG0780037249.01	PPI
MsG0780038510.01	MsG0780037249.01	PPI
MsG0480022015.01	MsG0780037249.01	PPI
MsG0780038497.01	MsG0780037249.01	PPI
MsG0780037249.01	MsG0280011356.01	PPI
MsG0080048156.01	MsG0780037249.01	PPI
MsG0780037561.01	MsG0780037249.01	PPI
MsG0780037584.01	MsG0780037249.01	PPI
MsG0580024322.01	MsG0780037249.01	PPI
MsG0480022017.01	MsG0780037249.01	PPI
MsG0780037249.01	MsG0580024319.01	PPI
MsG0780037378.01	MsG0780037249.01	PPI
MsG0780041655.01	MsG0780037249.01	PPI
MsG0580024537.01	MsG0780037249.01	PPI
MsG0780037584.01	MsG0780037249.01	PPI
MsG0580028652.01	MsG0780037249.01	PPI
MsG0780038148.01	MsG0780037249.01	PPI
MsG0780037584.01	MsG0780037249.01	PPI
MsG0780037249.01	MsG0780037379.01	PPI
MsG0780037561.01	MsG0780037249.01	PPI
MsG0380017513.01	MsG0780037249.01	PPI
MsG0780037561.01	MsG0780037249.01	PPI
MsG0780037590.01	MsG0780037249.01	PPI
MsG0780038469.01	MsG0780037249.01	PPI
MsG0280008687.01	MsG0780037249.01	PPI
MsG0780038471.01	MsG0780037249.01	PPI
MsG0780041629.01	MsG0780037249.01	PPI
MsG0780037249.01	MsG0280007849.01	PPI
MsG0780037181.01	MsG0780037249.01	PPI
MsG0580028638.01	MsG0780037249.01	PPI
MsG0580024321.01	MsG0780037249.01	PPI
MsG0080049065.01	MsG0780037249.01	PPI
MsG0780041655.01	MsG0780037249.01	PPI
MsG0780037249.01	MsG0780037573.01	PPI
MsG0780037385.01	MsG0780037249.01	PPI
MsG0780038508.01	MsG0780037249.01	PPI
MsG0780037547.01	MsG0780037249.01	PPI
MsG0780038501.01	MsG0780037249.01	PPI
MsG0780037367.01	MsG0780037249.01	PPI
MsG0180005013.01	MsG0780037249.01	PPI
MsG0280008689.01	MsG0780037249.01	PPI
MsG0580029020.01	MsG0780037249.01	PPI
MsG0480022109.01	MsG0780037249.01	PPI
MsG0780037380.01	MsG0780037249.01	PPI
MsG0780037249.01	MsG0780037561.01	PPI
MsG0780037375.01	MsG0780037249.01	PPI
MsG0580029019.01	MsG0780037249.01	PPI
MsG0180006146.01	MsG0780037249.01	PPI
MsG0780037542.01	MsG0780037249.01	PPI
MsG0180005012.01	MsG0780037249.01	PPI
MsG0780037249.01	MsG0780037546.01	PPI
MsG0780037598.01	MsG0780037249.01	PPI
MsG0280007849.01	MsG0780037249.01	PPI
MsG0780041655.01	MsG0780037249.01	PPI
MsG0580028297.01	MsG0780037249.01	PPI
MsG0780037381.01	MsG0780037249.01	PPI
MsG0380014181.01	MsG0780037249.01	PPI
MsG0780037584.01	MsG0780037249.01	PPI
MsG0780037556.01	MsG0780037249.01	PPI
MsG0380017479.01	MsG0780037249.01	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037249.01.T01	MTR_2g007090	44.231	312	127	8	1	283	1	294	1.95e-67	212
MsG0780037249.01.T01	MTR_3g099830	60.227	176	67	2	111	283	199	374	7.48e-66	210
MsG0780037249.01.T01	MTR_3g099830	60.550	109	41	1	1	107	1	109	5.51e-35	130
MsG0780037249.01.T01	MTR_2g007400	56.977	172	72	1	113	282	231	402	1.36e-59	195
MsG0780037249.01.T01	MTR_2g007400	59.223	103	40	1	1	101	1	103	4.82e-32	122
MsG0780037249.01.T01	MTR_6g029350	58.523	176	62	5	111	282	29	197	3.29e-59	189
MsG0780037249.01.T01	MTR_7g007340	58.235	170	61	4	111	277	189	351	8.66e-58	189
MsG0780037249.01.T01	MTR_7g007340	42.935	184	92	4	4	186	5	176	8.73e-34	127
MsG0780037249.01.T01	MTR_2g005990	55.294	170	74	1	116	283	226	395	2.46e-57	189
MsG0780037249.01.T01	MTR_2g005990	53.125	96	43	1	8	101	2	97	1.55e-24	102
MsG0780037249.01.T01	MTR_2g007360	51.892	185	77	4	109	283	192	374	1.40e-54	181
MsG0780037249.01.T01	MTR_2g007360	38.857	175	73	4	1	148	1	168	5.83e-25	103
MsG0780037249.01.T01	MTR_2g008320	52.874	174	71	4	112	282	261	426	1.49e-50	172
MsG0780037249.01.T01	MTR_2g008320	52.525	99	45	1	6	102	46	144	1.87e-22	96.7
MsG0780037249.01.T01	MTR_1g107385	48.295	176	79	4	113	283	255	423	3.31e-47	163
MsG0780037249.01.T01	MTR_1g107385	46.591	88	43	2	12	96	32	118	2.59e-14	73.2
MsG0780037249.01.T01	MTR_2g008310	51.149	174	72	4	112	282	207	370	2.78e-46	160
MsG0780037249.01.T01	MTR_2g008310	55.789	95	40	1	11	103	1	95	2.22e-23	99.0
MsG0780037249.01.T01	MTR_7g075820	49.711	173	77	4	113	283	230	394	1.88e-44	155
MsG0780037249.01.T01	MTR_7g075820	38.211	123	72	2	12	132	6	126	2.87e-16	78.6
MsG0780037249.01.T01	MTR_2g007550	34.718	337	144	13	7	280	9	332	1.18e-43	152
MsG0780037249.01.T01	MTR_2g007450	41.361	191	84	5	112	283	239	420	1.28e-34	130
MsG0780037249.01.T01	MTR_2g007450	45.918	98	51	1	6	101	10	107	2.39e-19	87.8
MsG0780037249.01.T01	MTR_5g083890	44.375	160	86	2	112	269	230	388	2.86e-34	130
MsG0780037249.01.T01	MTR_5g083890	56.044	91	38	1	12	100	6	96	6.71e-21	92.8
MsG0780037249.01.T01	MTR_1g053025	49.265	136	55	4	151	283	265	389	1.28e-33	126
MsG0780037249.01.T01	MTR_1g053025	41.905	105	54	3	11	108	1	105	2.48e-13	70.1
MsG0780037249.01.T01	MTR_7g034090	33.742	326	151	11	12	286	4	315	1.01e-31	122
MsG0780037249.01.T01	MTR_3g107100	41.711	187	80	7	116	282	220	397	6.33e-30	117
MsG0780037249.01.T01	MTR_3g107100	43.564	101	48	3	12	108	11	106	6.72e-13	68.9
MsG0780037249.01.T01	MTR_7g007370	48.966	145	68	3	112	254	176	316	4.09e-29	114
MsG0780037249.01.T01	MTR_7g007370	60.000	90	23	3	1	85	1	82	7.97e-23	96.7
MsG0780037249.01.T01	MTR_7g033470	68.889	90	22	4	1	85	1	89	1.40e-28	107
MsG0780037249.01.T01	MTR_3g107120	40.341	176	87	7	112	280	224	388	3.56e-27	109
MsG0780037249.01.T01	MTR_7g083740	46.043	139	68	5	151	287	238	371	9.91e-27	107
MsG0780037249.01.T01	MTR_7g083740	43.373	83	45	1	11	91	16	98	5.47e-13	68.9
MsG0780037249.01.T01	MTR_3g107160	40.884	181	91	7	112	286	216	386	1.34e-26	107
MsG0780037249.01.T01	MTR_3g107160	41.667	84	45	2	12	94	10	90	6.00e-11	62.8
MsG0780037249.01.T01	MTR_2g007610	44.361	133	67	4	153	285	28	153	2.40e-25	99.8
MsG0780037249.01.T01	MTR_7g007080	42.012	169	83	7	119	283	222	379	2.99e-25	103
MsG0780037249.01.T01	MTR_7g034120	35.484	186	97	9	107	284	139	309	1.92e-22	95.1
MsG0780037249.01.T01	MTR_3g106960	38.922	167	86	8	122	282	41	197	1.16e-21	91.7
MsG0780037249.01.T01	MTR_2g007460	41.818	110	47	2	1	108	1	95	3.56e-21	86.7
MsG0780037249.01.T01	MTR_8g085430	31.046	306	153	14	3	258	2	299	1.81e-20	90.1
MsG0780037249.01.T01	MTR_3g026920	35.602	191	82	7	113	282	234	404	1.68e-19	88.2
MsG0780037249.01.T01	MTR_3g026920	42.857	112	55	3	6	108	13	124	3.39e-15	75.5
MsG0780037249.01.T01	MTR_1g053050	51.220	82	37	2	202	283	37	115	2.22e-19	82.0
MsG0780037249.01.T01	MTR_7g056280	35.795	176	102	6	112	280	399	570	4.57e-19	87.4
MsG0780037249.01.T01	MTR_7g056280	44.944	89	41	3	10	94	4	88	4.08e-11	63.5
MsG0780037249.01.T01	MTR_7g075800	38.255	149	76	6	113	247	241	387	1.11e-18	86.3
MsG0780037249.01.T01	MTR_7g033915	33.333	183	93	9	113	281	196	363	2.38e-17	81.6
MsG0780037249.01.T01	MTR_6g022520	30.769	195	104	6	107	285	136	315	2.52e-17	80.9
MsG0780037249.01.T01	MTR_7g098510	32.418	182	99	6	112	280	218	388	4.53e-17	80.9
MsG0780037249.01.T01	MTR_7g098570	33.511	188	101	7	112	286	220	396	4.81e-17	81.3
MsG0780037249.01.T01	MTR_6g040270	29.891	184	102	5	112	282	211	380	5.33e-17	80.9
MsG0780037249.01.T01	MTR_7g056277	34.054	185	92	8	113	285	462	628	7.44e-17	80.9
MsG0780037249.01.T01	MTR_1g108800	32.787	183	96	7	109	282	177	341	2.55e-16	78.6
MsG0780037249.01.T01	MTR_7g088260	33.333	186	95	8	112	280	286	459	2.84e-16	79.0
MsG0780037249.01.T01	MTR_5g073370	30.457	197	116	5	103	289	201	386	3.00e-16	78.6
MsG0780037249.01.T01	MTR_2g007530	34.969	163	73	4	128	282	199	336	3.74e-16	77.8
MsG0780037249.01.T01	MTR_2g007530	35.106	188	101	7	6	185	13	187	1.50e-14	73.2
MsG0780037249.01.T01	MTR_1g041245	29.442	197	106	8	104	281	202	384	4.69e-16	77.8
MsG0780037249.01.T01	MTR_1g041245	31.633	196	114	8	1	181	1	191	6.29e-11	62.8
MsG0780037249.01.T01	MTR_5g045170	31.937	191	100	6	110	282	212	390	4.92e-16	78.2
MsG0780037249.01.T01	MTR_7g098480	33.333	180	97	6	116	283	221	389	8.44e-16	77.8
MsG0780037249.01.T01	MTR_4g098590	38.356	146	81	4	124	267	228	366	2.31e-15	75.9
MsG0780037249.01.T01	MTR_1089s0010	27.451	204	118	5	95	285	195	381	2.73e-15	75.9
MsG0780037249.01.T01	MTR_5g054920	32.919	161	84	7	112	259	32	181	2.74e-15	73.2
MsG0780037249.01.T01	MTR_7g033990	34.615	156	76	8	131	275	235	375	3.09e-15	75.9
MsG0780037249.01.T01	MTR_7g056433	33.103	145	71	5	149	280	255	386	3.39e-15	75.5
MsG0780037249.01.T01	MTR_7g056433	32.990	194	99	7	12	183	12	196	1.82e-12	67.4
MsG0780037249.01.T01	MTR_7g056287	34.054	185	92	8	113	285	206	372	4.07e-15	75.1
MsG0780037249.01.T01	MTR_3g105060	35.115	131	69	5	151	280	255	370	1.35e-14	73.6
MsG0780037249.01.T01	MTR_0543s0010	32.787	183	96	7	112	280	278	447	1.89e-14	73.6
MsG0780037249.01.T01	MTR_3g036250	35.714	140	72	7	149	280	234	363	1.94e-14	73.2
MsG0780037249.01.T01	MTR_5g073420	30.387	181	99	5	113	280	211	377	3.24e-14	72.4
MsG0780037249.01.T01	MTR_7g056020	30.964	197	100	7	103	276	184	367	3.57e-14	73.2
MsG0780037249.01.T01	MTR_7g026500	30.481	187	99	7	112	280	219	392	4.19e-14	72.4
MsG0780037249.01.T01	MTR_5g058100	32.447	188	98	8	113	285	213	386	5.28e-14	72.0
MsG0780037249.01.T01	MTR_5g058100	33.673	196	103	8	5	181	2	189	6.46e-11	62.8
MsG0780037249.01.T01	MTR_7g032380	36.620	142	68	6	152	281	223	354	5.45e-14	71.6
MsG0780037249.01.T01	MTR_5g058000	33.838	198	100	9	95	281	196	373	6.87e-14	71.6
MsG0780037249.01.T01	MTR_4g039440	31.188	202	99	6	106	285	231	414	8.49e-14	71.6
MsG0780037249.01.T01	MTR_1g085120	30.435	207	114	7	93	285	358	548	1.31e-13	71.2
MsG0780037249.01.T01	MTR_1g085120	29.952	207	115	6	93	285	283	473	1.41e-13	70.9
MsG0780037249.01.T01	MTR_5g008950	30.769	182	100	8	111	280	195	362	2.71e-13	69.7
MsG0780037249.01.T01	MTR_1g108820	30.526	190	99	8	110	282	212	385	3.59e-13	69.3
MsG0780037249.01.T01	MTR_7g115270	29.688	192	109	6	104	280	219	399	3.89e-13	69.3
MsG0780037249.01.T01	MTR_3g087260	32.418	182	97	8	113	280	285	454	4.05e-13	69.7
MsG0780037249.01.T01	MTR_7g114710	35.971	139	73	5	151	280	230	361	4.45e-13	68.9
MsG0780037249.01.T01	MTR_1g066830	28.191	188	102	7	113	281	212	385	5.03e-13	68.9
MsG0780037249.01.T01	MTR_5g039450	28.796	191	99	6	106	280	186	355	7.86e-13	68.2
MsG0780037249.01.T01	MTR_7g056420	34.058	138	69	5	153	277	231	359	9.09e-13	68.9
MsG0780037249.01.T01	MTR_7g056430	34.058	138	69	5	153	277	231	359	1.01e-12	68.9
MsG0780037249.01.T01	MTR_1g077420	46.341	82	42	2	12	93	4	83	1.27e-12	67.0
MsG0780037249.01.T01	MTR_2g007500	53.521	71	31	1	7	75	9	79	2.19e-12	67.0
MsG0780037249.01.T01	MTR_2g007500	37.302	126	58	5	116	227	212	330	4.15e-12	66.2
MsG0780037249.01.T01	MTR_7g055943	26.740	273	146	10	29	285	189	423	2.20e-12	67.4
MsG0780037249.01.T01	MTR_0492s0020	33.987	153	79	6	112	255	278	417	2.77e-12	67.0
MsG0780037249.01.T01	MTR_5g007410	30.052	193	100	8	109	280	227	405	3.85e-12	66.6
MsG0780037249.01.T01	MTR_7g032370	35.417	144	70	6	151	281	217	350	3.88e-12	66.2
MsG0780037249.01.T01	MTR_1377s0010	30.935	139	78	3	129	262	9	134	4.91e-12	62.8
MsG0780037249.01.T01	MTR_7g034110	26.174	298	147	7	3	233	2	293	4.99e-12	65.9
MsG0780037249.01.T01	MTR_3g094980	38.532	109	59	4	161	269	30	130	7.95e-12	63.2
MsG0780037249.01.T01	MTR_3g023470	30.625	160	103	4	12	165	15	172	8.82e-12	65.5
MsG0780037249.01.T01	MTR_1g492880	46.512	86	43	2	10	94	4	87	1.38e-11	60.5
MsG0780037249.01.T01	MTR_2g007100	46.269	67	34	1	11	75	1	67	1.50e-11	59.7
MsG0780037249.01.T01	MTR_1g492880	46.512	86	43	2	10	94	4	87	1.52e-11	60.5
MsG0780037249.01.T01	MTR_2g020180	31.469	143	64	5	146	274	87	209	1.59e-11	63.2
MsG0780037249.01.T01	MTR_5g087940	30.688	189	95	7	12	195	26	183	1.63e-11	64.7
MsG0780037249.01.T01	MTR_2g103680	52.542	59	25	1	1	59	1	56	2.08e-11	60.8
MsG0780037249.01.T01	MTR_6g045333	29.327	208	98	8	103	281	257	444	2.45e-11	64.3
MsG0780037249.01.T01	MTR_3g108150	31.707	164	86	7	133	280	231	384	2.70e-11	63.9
MsG0780037249.01.T01	MTR_7g098590	48.193	83	35	3	10	88	16	94	3.02e-11	60.5
MsG0780037249.01.T01	MTR_4g080787	32.432	185	95	5	12	181	19	188	3.21e-11	63.9
MsG0780037249.01.T01	MTR_5g082930	40.230	87	48	2	14	96	17	103	4.41e-11	61.6
MsG0780037249.01.T01	MTR_3g467400	43.750	96	48	3	11	104	2	93	5.91e-11	62.8
MsG0780037249.01.T01	MTR_2g036470	29.651	172	96	7	126	282	234	395	6.63e-11	62.8
MsG0780037249.01.T01	MTR_8g465650	36.082	97	57	2	1	97	1	92	8.99e-11	62.4
MsG0780037249.01.T01	MTR_3g108560	29.032	186	102	8	112	280	214	386	9.08e-11	62.4
MsG0780037249.01.T01	MTR_6g022500	28.571	196	105	6	107	284	299	477	9.89e-11	62.4

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780037249.01.T01	AT3G58880	30.653	199	110	7	11	186	2	195	8.37e-13	68.6
MsG0780037249.01.T01	AT3G49030	41.975	81	47	0	8	88	17	97	2.11e-12	67.4
MsG0780037249.01.T01	AT3G49030	41.975	81	47	0	8	88	17	97	2.33e-12	67.4
MsG0780037249.01.T01	AT1G16930	44.086	93	45	3	12	101	15	103	2.54e-12	67.4
MsG0780037249.01.T01	AT1G16930	44.086	93	45	3	12	101	15	103	2.54e-12	67.4
MsG0780037249.01.T01	AT1G16930	44.086	93	45	3	12	101	15	103	2.54e-12	67.4
MsG0780037249.01.T01	AT2G42720	29.016	193	116	5	11	183	1	192	5.30e-12	66.2
MsG0780037249.01.T01	AT4G26340	47.059	68	36	0	11	78	1	68	5.49e-12	66.2
MsG0780037249.01.T01	AT5G22700	28.947	190	114	6	12	187	43	225	5.92e-12	66.2
MsG0780037249.01.T01	AT5G22700	28.947	190	114	6	12	187	43	225	6.94e-12	65.9
MsG0780037249.01.T01	AT5G22700	28.947	190	114	6	12	187	6	188	8.46e-12	65.5
MsG0780037249.01.T01	AT5G22700	28.947	190	114	6	12	187	6	188	8.46e-12	65.5
MsG0780037249.01.T01	AT5G22700	28.947	190	114	6	12	187	6	188	8.46e-12	65.5
MsG0780037249.01.T01	AT5G22700	28.947	190	114	6	12	187	6	188	8.46e-12	65.5
MsG0780037249.01.T01	AT3G59200	36.434	129	64	5	9	128	4	123	1.26e-11	64.7
MsG0780037249.01.T01	AT3G59200	36.434	129	64	5	9	128	4	123	1.41e-11	65.1
MsG0780037249.01.T01	AT2G04230	48.485	66	30	1	5	70	6	67	1.60e-11	64.7
MsG0780037249.01.T01	AT4G13960	29.648	199	105	8	11	197	1	176	2.22e-11	64.3
MsG0780037249.01.T01	AT4G13960	29.648	199	105	8	11	197	1	176	2.22e-11	64.3
MsG0780037249.01.T01	AT1G26890	50.725	69	31	2	4	70	28	95	3.08e-11	63.5
MsG0780037249.01.T01	AT1G26890	50.725	69	31	2	4	70	28	95	3.08e-11	63.5
MsG0780037249.01.T01	AT1G26890	36.559	93	50	2	4	94	28	113	3.11e-11	63.2
MsG0780037249.01.T01	AT1G26890	36.559	93	50	2	4	94	28	113	3.11e-11	63.2
MsG0780037249.01.T01	AT3G59150	30.769	195	112	8	12	185	13	205	3.47e-11	63.9
MsG0780037249.01.T01	AT1G26890	36.559	93	50	2	4	94	28	113	4.44e-11	63.5
MsG0780037249.01.T01	AT5G38390	44.565	92	44	3	11	101	1	86	5.91e-11	63.2

Find 59 sgRNAs with CRISPR-Local

Find 96 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATTTGGTGCTGAACTATAAT+TGG	0.105146	7:-22448793	MsG0780037249.01.T01:CDS
AGGCACCCTGGAACAAATTT+TGG	0.181505	7:+22448561	None:intergenic
GTCTTTGGAGCCAGAGTCTT+TGG	0.210097	7:+22449407	None:intergenic
ACCTCCACCGTTGAGGTTTC+CGG	0.237175	7:+22449573	None:intergenic
TTCCATCCGCAGTTTCATTC+TGG	0.245539	7:-22449328	MsG0780037249.01.T01:CDS
TCAAAATCTTGACCTTTATC+AGG	0.265298	7:-22448732	MsG0780037249.01.T01:intron
GCACCAAATGAGTCAAATTA+TGG	0.288597	7:+22448807	None:intergenic
AAATTCGTCGAAGCTGTCTT+TGG	0.307271	7:+22449392	None:intergenic
CGTTCCAGATGTAGAATTCA+TGG	0.315260	7:-22449433	MsG0780037249.01.T01:CDS
GTTCCATAATTTGACTCATT+TGG	0.323958	7:-22448810	MsG0780037249.01.T01:CDS
GCACTTATGCAGGCTGGAAC+TGG	0.327088	7:-22449036	MsG0780037249.01.T01:intron
CAAAGAGATGGAAGAATCTA+TGG	0.342026	7:-22449461	MsG0780037249.01.T01:CDS
CGACTTTATGATCTCGTTGT+TGG	0.361059	7:-22449285	MsG0780037249.01.T01:intron
TGAAGTGAGAAAGGCTTGTT+TGG	0.387146	7:+22449491	None:intergenic
ACCCATCCAAAATTTGTTCC+AGG	0.388544	7:-22448567	MsG0780037249.01.T01:CDS
ACTATGCGGGACTTTGCATT+TGG	0.389935	7:-22448516	MsG0780037249.01.T01:CDS
TGCTCTGTTCAACATTGTTA+AGG	0.395002	7:+22449009	None:intergenic
GACGATTAACCTCGTGTTCA+AGG	0.400521	7:-22448386	MsG0780037249.01.T01:CDS
CTTCAATTCTTTCAAAGAGA+TGG	0.401205	7:-22449473	MsG0780037249.01.T01:CDS
CCTCAACGGTGGAGGTAGAT+AGG	0.403359	7:-22449566	MsG0780037249.01.T01:CDS
TGAAAGAATTGAAGTGAGAA+AGG	0.416065	7:+22449482	None:intergenic
GCTTCCATGAATTCTACATC+TGG	0.425239	7:+22449429	None:intergenic
GAGAAGAGAGAATCTGAATC+AGG	0.432663	7:+22449520	None:intergenic
TTTGGTGCTGAACTATAATT+GGG	0.435209	7:-22448792	MsG0780037249.01.T01:CDS
ATGCGGGACTTTGCATTTGG+AGG	0.439069	7:-22448513	MsG0780037249.01.T01:CDS
TTAAGAAACAAACCTGATAA+AGG	0.439287	7:+22448720	None:intergenic
CTATGTCAATCTGGTGCTCC+AGG	0.443857	7:-22448428	MsG0780037249.01.T01:CDS
ATCTGAATCAGGATATCGTT+TGG	0.461611	7:+22449531	None:intergenic
CACTTATGCAGGCTGGAACT+GGG	0.462576	7:-22449035	MsG0780037249.01.T01:intron
AAAAGCTTATTTACCTATGC+CGG	0.478581	7:+22448315	None:intergenic
CCTTAAAACTTGTACTATGC+GGG	0.489288	7:-22448529	MsG0780037249.01.T01:CDS
GACAATATATGCGTGAAACC+TGG	0.497289	7:-22448590	MsG0780037249.01.T01:CDS
AAGGGTAGTGTTGCCGGCAT+AGG	0.508517	7:-22448328	None:intergenic
CAATCTGGTGCTCCAGGAAA+CGG	0.509574	7:-22448422	MsG0780037249.01.T01:CDS
TTCATGGAAGCCAAAGACTC+TGG	0.519933	7:-22449417	MsG0780037249.01.T01:CDS
ATTGACATAGTATCTAAAAC+CGG	0.522751	7:+22448441	None:intergenic
ATTTATTCTGAAGAATTCAC+CGG	0.523700	7:-22448460	MsG0780037249.01.T01:CDS
AGGTTTGATGAAAGGCACCC+TGG	0.525796	7:+22448549	None:intergenic
GTGAGAAAGGCTTGTTTGGT+GGG	0.528660	7:+22449495	None:intergenic
CCCATCCAAAATTTGTTCCA+GGG	0.533208	7:-22448566	MsG0780037249.01.T01:CDS
ATCTACGCATAAGACTATCC+AGG	0.534923	7:-22448937	MsG0780037249.01.T01:CDS
ACATAATGTGATAGCTCTGT+AGG	0.546243	7:+22448490	None:intergenic
TCATGCCCACAAAAGCAGTC+TGG	0.547651	7:+22448621	None:intergenic
AGTGAGAAAGGCTTGTTTGG+TGG	0.554557	7:+22449494	None:intergenic
ACGATTAACCTCGTGTTCAA+GGG	0.555423	7:-22448385	MsG0780037249.01.T01:CDS
GCCGGAAACCTCAACGGTGG+AGG	0.565009	7:-22449574	MsG0780037249.01.T01:CDS
TTGCGGTCGCGACAAACTGC+AGG	0.571805	7:-22449357	MsG0780037249.01.T01:CDS
CCTATCTACCTCCACCGTTG+AGG	0.572029	7:+22449566	None:intergenic
AAAATAATGCAGGGTTGTCG+AGG	0.583040	7:-22448848	MsG0780037249.01.T01:intron
CCATAATAGAATGTCTTCGC+CGG	0.594527	7:-22449592	None:intergenic
AATTTGTTTACTACGTATTG+CGG	0.601388	7:-22449374	MsG0780037249.01.T01:CDS
ACCTTAAAACTTGTACTATG+CGG	0.612983	7:-22448530	MsG0780037249.01.T01:CDS
TGCAGAAGCCCTTGAACACG+AGG	0.614415	7:+22448377	None:intergenic
GTCTTCGCCGGAAACCTCAA+CGG	0.629363	7:-22449580	MsG0780037249.01.T01:CDS
TGAGTCAAATTATGGAACGT+AGG	0.635708	7:+22448815	None:intergenic
TCTACGCATAAGACTATCCA+GGG	0.638723	7:-22448936	MsG0780037249.01.T01:intron
GTCCAGAATGAAACTGCGGA+TGG	0.661750	7:+22449326	None:intergenic
TTCGCCGGAAACCTCAACGG+TGG	0.688061	7:-22449577	MsG0780037249.01.T01:CDS
TAACGTCCAGAATGAAACTG+CGG	0.731878	7:+22449322	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AAACTCAATTTTATTAATAT+GGG	-	Chr7:22448703-22448722	MsG0780037249.01.T01:intron	10.0%
!!!	AACTTTCAATTTATTTTAAA+AGG	-	Chr7:22449564-22449583	MsG0780037249.01.T01:CDS	10.0%
!!!	ACTTTCAATTTATTTTAAAA+GGG	-	Chr7:22449565-22449584	MsG0780037249.01.T01:CDS	10.0%
!!!	TAAACTCAATTTTATTAATA+TGG	-	Chr7:22448702-22448721	MsG0780037249.01.T01:intron	10.0%
!!	TTTAAATGATATATATACCC+TGG	+	Chr7:22448995-22449014	None:intergenic	20.0%
!!!	ATACTGTTTTAAAATAATGC+AGG	-	Chr7:22449053-22449072	MsG0780037249.01.T01:intron	20.0%
!!!	TACTGTTTTAAAATAATGCA+GGG	-	Chr7:22449054-22449073	MsG0780037249.01.T01:intron	20.0%
!	TTAAGAAACAAACCTGATAA+AGG	+	Chr7:22449194-22449213	None:intergenic	25.0%
!!	AATTTGTTTACTACGTATTG+CGG	-	Chr7:22448537-22448556	MsG0780037249.01.T01:CDS	25.0%
!!	ATTGACATAGTATCTAAAAC+CGG	+	Chr7:22449473-22449492	None:intergenic	25.0%
!!	ATTTATTCTGAAGAATTCAC+CGG	-	Chr7:22449451-22449470	MsG0780037249.01.T01:CDS	25.0%
!!	TACCTATTTGAAGTAATCAA+AGG	-	Chr7:22448853-22448872	MsG0780037249.01.T01:intron	25.0%
!!	TTGCAACGAAATTTTACATT+CGG	+	Chr7:22448935-22448954	None:intergenic	25.0%
!!	TTTTAGATACTATGTCAATC+TGG	-	Chr7:22449474-22449493	MsG0780037249.01.T01:CDS	25.0%
!!!	AAGTTTTAAGGTTTGATGAA+AGG	+	Chr7:22449373-22449392	None:intergenic	25.0%
	ACCTTAAAACTTGTACTATG+CGG	-	Chr7:22449381-22449400	MsG0780037249.01.T01:CDS	30.0%
	AGGTAAAGATCTTCAAGAAT+TGG	+	Chr7:22448838-22448857	None:intergenic	30.0%
	CTTCAATTCTTTCAAAGAGA+TGG	-	Chr7:22448438-22448457	MsG0780037249.01.T01:CDS	30.0%
	GATCTCATGAATCTTATAGA+AGG	-	Chr7:22448808-22448827	MsG0780037249.01.T01:CDS	30.0%
	GTTCCATAATTTGACTCATT+TGG	-	Chr7:22449101-22449120	MsG0780037249.01.T01:intron	30.0%
	TCAAAATCTTGACCTTTATC+AGG	-	Chr7:22449179-22449198	MsG0780037249.01.T01:intron	30.0%
	TGAAAGAATTGAAGTGAGAA+AGG	+	Chr7:22448432-22448451	None:intergenic	30.0%
	TGCCTTTGATTACTTCAAAT+AGG	+	Chr7:22448858-22448877	None:intergenic	30.0%
!	AATTGCCTTATTCTATCCTT+TGG	-	Chr7:22448659-22448678	MsG0780037249.01.T01:intron	30.0%
!!	ATTTGGTGCTGAACTATAAT+TGG	-	Chr7:22449118-22449137	MsG0780037249.01.T01:intron	30.0%
!!	TTTGGTGCTGAACTATAATT+GGG	-	Chr7:22449119-22449138	MsG0780037249.01.T01:intron	30.0%
!!!	AGGTCAAGATTTTGAAGTTT+CGG	+	Chr7:22449174-22449193	None:intergenic	30.0%
	ACCAAATGTTTGTCAAGTGT+AGG	+	Chr7:22448774-22448793	None:intergenic	35.0%
	AGGATAGAATAAGGCAATTC+AGG	+	Chr7:22448658-22448677	None:intergenic	35.0%
	ATCTGAATCAGGATATCGTT+TGG	+	Chr7:22448383-22448402	None:intergenic	35.0%
	CAAAGAGATGGAAGAATCTA+TGG	-	Chr7:22448450-22448469	MsG0780037249.01.T01:CDS	35.0%
	CCAAATGTTTGTCAAGTGTA+GGG	+	Chr7:22448773-22448792	None:intergenic	35.0%
	CCTTAAAACTTGTACTATGC+GGG	-	Chr7:22449382-22449401	MsG0780037249.01.T01:CDS	35.0%
	GATAGAATAAGGCAATTCAG+GGG	+	Chr7:22448656-22448675	None:intergenic	35.0%
	GCACCAAATGAGTCAAATTA+TGG	+	Chr7:22449107-22449126	None:intergenic	35.0%
	GGATAGAATAAGGCAATTCA+GGG	+	Chr7:22448657-22448676	None:intergenic	35.0%
	GTACACCAAAGGATAGAATA+AGG	+	Chr7:22448667-22448686	None:intergenic	35.0%
	TGAGTCAAATTATGGAACGT+AGG	+	Chr7:22449099-22449118	None:intergenic	35.0%
	TGCTCTGTTCAACATTGTTA+AGG	+	Chr7:22448905-22448924	None:intergenic	35.0%
!	ACATAATGTGATAGCTCTGT+AGG	+	Chr7:22449424-22449443	None:intergenic	35.0%
!!	ATAATACCAGACTGCTTTTG+TGG	-	Chr7:22449284-22449303	MsG0780037249.01.T01:intron	35.0%
!!	TAATACCAGACTGCTTTTGT+GGG	-	Chr7:22449285-22449304	MsG0780037249.01.T01:intron	35.0%
!!	TTCTATTTTAGACCGTTTCC+TGG	+	Chr7:22449504-22449523	None:intergenic	35.0%
!!	TTTTAAAAGGGTAGTGTTGC+CGG	-	Chr7:22449577-22449596	MsG0780037249.01.T01:CDS	35.0%
!!!	GATTTTGAAGTTTCGGACAA+TGG	+	Chr7:22449167-22449186	None:intergenic	35.0%
	AAAATAATGCAGGGTTGTCG+AGG	-	Chr7:22449063-22449082	MsG0780037249.01.T01:intron	40.0%
	AAATTCGTCGAAGCTGTCTT+TGG	+	Chr7:22448522-22448541	None:intergenic	40.0%
	ACGATTAACCTCGTGTTCAA+GGG	-	Chr7:22449526-22449545	MsG0780037249.01.T01:CDS	40.0%
	ATCTACGCATAAGACTATCC+AGG	-	Chr7:22448974-22448993	MsG0780037249.01.T01:CDS	40.0%
	CCCTACACTTGACAAACATT+TGG	-	Chr7:22448770-22448789	MsG0780037249.01.T01:CDS	40.0%
	CGACTTTATGATCTCGTTGT+TGG	-	Chr7:22448626-22448645	MsG0780037249.01.T01:CDS	40.0%
	CGTTCCAGATGTAGAATTCA+TGG	-	Chr7:22448478-22448497	MsG0780037249.01.T01:CDS	40.0%
	GACAATATATGCGTGAAACC+TGG	-	Chr7:22449321-22449340	MsG0780037249.01.T01:CDS	40.0%
	GAGAAGAGAGAATCTGAATC+AGG	+	Chr7:22448394-22448413	None:intergenic	40.0%
	GAGGGTAATGTTACGTGAAA+AGG	+	Chr7:22448742-22448761	None:intergenic	40.0%
	GCTTCCATGAATTCTACATC+TGG	+	Chr7:22448485-22448504	None:intergenic	40.0%
	TAACGTCCAGAATGAAACTG+CGG	+	Chr7:22448592-22448611	None:intergenic	40.0%
	TCTACGCATAAGACTATCCA+GGG	-	Chr7:22448975-22448994	MsG0780037249.01.T01:CDS	40.0%
!	AACAAATTTTGGATGGGTCC+AGG	+	Chr7:22449342-22449361	None:intergenic	40.0%
!	ACCCATCCAAAATTTGTTCC+AGG	-	Chr7:22449344-22449363	MsG0780037249.01.T01:CDS	40.0%
!	ACCCTGGAACAAATTTTGGA+TGG	+	Chr7:22449349-22449368	None:intergenic	40.0%
!	CAACAAGTGTTGTACACCAA+AGG	+	Chr7:22448678-22448697	None:intergenic	40.0%
!	CCCATCCAAAATTTGTTCCA+GGG	-	Chr7:22449345-22449364	MsG0780037249.01.T01:CDS	40.0%
!	CCCGCATAGTACAAGTTTTA+AGG	+	Chr7:22449385-22449404	None:intergenic	40.0%
!	CCCTGGAACAAATTTTGGAT+GGG	+	Chr7:22449348-22449367	None:intergenic	40.0%
!	TGAAGTGAGAAAGGCTTGTT+TGG	+	Chr7:22448423-22448442	None:intergenic	40.0%
!	TTTTGTGGGCATGACTACTT+TGG	-	Chr7:22449299-22449318	MsG0780037249.01.T01:CDS	40.0%
!!	GTAATCAAAGGCACTTATGC+AGG	-	Chr7:22448865-22448884	MsG0780037249.01.T01:intron	40.0%
!!!	AAGTGTAGGGTTTTGAGTGA+GGG	+	Chr7:22448760-22448779	None:intergenic	40.0%
	ACTATGCGGGACTTTGCATT+TGG	-	Chr7:22449395-22449414	MsG0780037249.01.T01:CDS	45.0%
	GACGATTAACCTCGTGTTCA+AGG	-	Chr7:22449525-22449544	MsG0780037249.01.T01:CDS	45.0%
	TTCATGGAAGCCAAAGACTC+TGG	-	Chr7:22448494-22448513	MsG0780037249.01.T01:CDS	45.0%
	TTCCATCCGCAGTTTCATTC+TGG	-	Chr7:22448583-22448602	MsG0780037249.01.T01:CDS	45.0%
!	AGGCACCCTGGAACAAATTT+TGG	+	Chr7:22449353-22449372	None:intergenic	45.0%
!	AGTGAGAAAGGCTTGTTTGG+TGG	+	Chr7:22448420-22448439	None:intergenic	45.0%
!	GGACAATGGAGCAGCATTTT+TGG	+	Chr7:22449153-22449172	None:intergenic	45.0%
!	GTGAGAAAGGCTTGTTTGGT+GGG	+	Chr7:22448419-22448438	None:intergenic	45.0%
!!!	CAAGTGTAGGGTTTTGAGTG+AGG	+	Chr7:22448761-22448780	None:intergenic	45.0%
	ATGCGGGACTTTGCATTTGG+AGG	-	Chr7:22449398-22449417	MsG0780037249.01.T01:CDS	50.0%
	CAATCTGGTGCTCCAGGAAA+CGG	-	Chr7:22449489-22449508	MsG0780037249.01.T01:CDS	50.0%
	CACTTATGCAGGCTGGAACT+GGG	-	Chr7:22448876-22448895	MsG0780037249.01.T01:intron	50.0%
	CTATGTCAATCTGGTGCTCC+AGG	-	Chr7:22449483-22449502	MsG0780037249.01.T01:CDS	50.0%
	GTCCAGAATGAAACTGCGGA+TGG	+	Chr7:22448588-22448607	None:intergenic	50.0%
	TCATGCCCACAAAAGCAGTC+TGG	+	Chr7:22449293-22449312	None:intergenic	50.0%
!!	AGGTTTGATGAAAGGCACCC+TGG	+	Chr7:22449365-22449384	None:intergenic	50.0%
!!	GTCTTTGGAGCCAGAGTCTT+TGG	+	Chr7:22448507-22448526	None:intergenic	50.0%
!!	TCAAAGGCACTTATGCAGGC+TGG	-	Chr7:22448869-22448888	MsG0780037249.01.T01:intron	50.0%
	ACCTCCACCGTTGAGGTTTC+CGG	+	Chr7:22448341-22448360	None:intergenic	55.0%
	CCTATCTACCTCCACCGTTG+AGG	+	Chr7:22448348-22448367	None:intergenic	55.0%
	CCTCAACGGTGGAGGTAGAT+AGG	-	Chr7:22448345-22448364	MsG0780037249.01.T01:CDS	55.0%
	GCACTTATGCAGGCTGGAAC+TGG	-	Chr7:22448875-22448894	MsG0780037249.01.T01:intron	55.0%
	GTCTTCGCCGGAAACCTCAA+CGG	-	Chr7:22448331-22448350	MsG0780037249.01.T01:CDS	55.0%
	TGCAGAAGCCCTTGAACACG+AGG	+	Chr7:22449537-22449556	None:intergenic	55.0%
	TTCGCCGGAAACCTCAACGG+TGG	-	Chr7:22448334-22448353	MsG0780037249.01.T01:CDS	60.0%
	TTGCGGTCGCGACAAACTGC+AGG	-	Chr7:22448554-22448573	MsG0780037249.01.T01:CDS	60.0%
	GCCGGAAACCTCAACGGTGG+AGG	-	Chr7:22448337-22448356	MsG0780037249.01.T01:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	22448329	22449604	22448329	ID=MsG0780037249.01;Name=MsG0780037249.01
Chr7	mRNA	22448329	22449604	22448329	ID=MsG0780037249.01.T01;Parent=MsG0780037249.01;Name=MsG0780037249.01.T01;_AED=0.46;_eAED=0.46;_QI=0\|0\|0\|1\|1\|1\|4\|0\|291
Chr7	exon	22449286	22449604	22449286	ID=MsG0780037249.01.T01:exon:4876;Parent=MsG0780037249.01.T01
Chr7	exon	22448937	22449046	22448937	ID=MsG0780037249.01.T01:exon:4877;Parent=MsG0780037249.01.T01
Chr7	exon	22448733	22448858	22448733	ID=MsG0780037249.01.T01:exon:4878;Parent=MsG0780037249.01.T01
Chr7	exon	22448329	22448649	22448329	ID=MsG0780037249.01.T01:exon:4879;Parent=MsG0780037249.01.T01
Chr7	CDS	22449286	22449604	22449286	ID=MsG0780037249.01.T01:cds;Parent=MsG0780037249.01.T01
Chr7	CDS	22448937	22449046	22448937	ID=MsG0780037249.01.T01:cds;Parent=MsG0780037249.01.T01
Chr7	CDS	22448733	22448858	22448733	ID=MsG0780037249.01.T01:cds;Parent=MsG0780037249.01.T01
Chr7	CDS	22448329	22448649	22448329	ID=MsG0780037249.01.T01:cds;Parent=MsG0780037249.01.T01

Gene Sequence

>MsG0780037249.01.T01

ATGTCTTCGCCGGAAACCTCAACGGTGGAGGTAGATAGGATAAGCAATTTACCAAACGATATCCTGATTCAGATTCTCTCTTCTCTTCCCACCAAACAAGCCTTTCTCACTTCAATTCTTTCAAAGAGATGGAAGAATCTATGGTGTTACGTTCCAGATGTAGAATTCATGGAAGCCAAAGACTCTGGCTCCAAAGACAGCTTCGACGAATTTGTTTACTACGTATTGCGGTCGCGACAAACTGCAGGTAATCATTCCATCCGCAGTTTCATTCTGGACGTTAAACATGATTCATCTCGACTTTATGATCTCGTTGTTGGCTGGAACTGGGACACCTTAACAATGTTGAACAGAGCAGATGTTACCGAATGTAAAATTTCGTTGCAAGCAATTTCAAATGTCGAGTATCTACGCATAAGACTATCCAGGGGTTGTCGAGGTCTTCACTTTCCTACGTTCCATAATTTGACTCATTTGGTGCTGAACTATAATTGGGATACAGTTCCAAAAATGCTGCTCCATTGTCCGAAACTTCAAAATCTTGACCTTTATCAGATAATACCAGACTGCTTTTGTGGGCATGACTACTTTGGACAATATATGCGTGAAACCTGGACCCATCCAAAATTTGTTCCAGGGTGCCTTTCATCAAACCTTAAAACTTGTACTATGCGGGACTTTGCATTTGGAGGCCTACAGAGCTATCACATTATGTTAGCAAAATTTATTCTGAAGAATTCACCGGTTTTAGATACTATGTCAATCTGGTGCTCCAGGAAACGGTCTAAAATAGAAAGACGATTAACCTCGTGTTCAAGGGCTTCTGCAACGTGTCAACTTTCAATTTATTTTAAAAGGGTAGTGTTGCCGGCATAG

Protein sequence

>MsG0780037249.01.T01

MSSPETSTVEVDRISNLPNDILIQILSSLPTKQAFLTSILSKRWKNLWCYVPDVEFMEAKDSGSKDSFDEFVYYVLRSRQTAGNHSIRSFILDVKHDSSRLYDLVVGWNWDTLTMLNRADVTECKISLQAISNVEYLRIRLSRGCRGLHFPTFHNLTHLVLNYNWDTVPKMLLHCPKLQNLDLYQIIPDCFCGHDYFGQYMRETWTHPKFVPGCLSSNLKTCTMRDFAFGGLQSYHIMLAKFILKNSPVLDTMSIWCSRKRSKIERRLTSCSRASATCQLSIYFKRVVLPA*