Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880041977.01.T01 | XP_024627785.1 | 95.73 | 281 | 12 | 0 | 1 | 281 | 1 | 281 | 0 | 529 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880041977.01.T01 | Q8S9K8 | 44.531 | 256 | 137 | 3 | 28 | 281 | 22 | 274 | 6.65E-74 | 230 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880041977.01.T01 | A0A396GD32 | 95.730 | 281 | 12 | 0 | 1 | 281 | 1 | 281 | 0.0 | 529 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048134.01 | MsG0880041977.01 | 0.849080 | 4.068175e-60 | 7.623784e-57 |
| MsG0180001800.01 | MsG0880041977.01 | 0.800661 | 1.297782e-48 | 6.077261e-46 |
| MsG0180004232.01 | MsG0880041977.01 | 0.829432 | 5.165610e-55 | 5.285934e-52 |
| MsG0180004359.01 | MsG0880041977.01 | 0.818973 | 1.482081e-52 | 1.126040e-49 |
| MsG0780040498.01 | MsG0880041977.01 | 0.833698 | 4.593921e-56 | 5.331306e-53 |
| MsG0780041036.01 | MsG0880041977.01 | 0.802103 | 6.576118e-49 | 3.193854e-46 |
| MsG0780041248.01 | MsG0880041977.01 | 0.809960 | 1.461265e-50 | 8.698987e-48 |
| MsG0880041977.01 | MsG0880042369.01 | 0.806806 | 6.879821e-50 | 3.769591e-47 |
| MsG0880041977.01 | MsG0880047383.01 | 0.841523 | 4.512776e-58 | 6.648685e-55 |
| MsG0280010936.01 | MsG0880041977.01 | 0.805496 | 1.297891e-49 | 6.876665e-47 |
| MsG0380011697.01 | MsG0880041977.01 | 0.811553 | 6.609966e-51 | 4.104063e-48 |
| MsG0380011701.01 | MsG0880041977.01 | 0.823178 | 1.593011e-53 | 1.361610e-50 |
| MsG0680031200.01 | MsG0880041977.01 | 0.804779 | 1.833519e-49 | 9.537680e-47 |
| MsG0680033755.01 | MsG0880041977.01 | 0.800382 | 1.479376e-48 | 6.878826e-46 |
| MsG0680034969.01 | MsG0880041977.01 | 0.807534 | 4.823119e-50 | 2.693111e-47 |
| MsG0480019146.01 | MsG0880041977.01 | 0.827399 | 1.598825e-54 | 1.541926e-51 |
| MsG0480019346.01 | MsG0880041977.01 | 0.826870 | 2.139079e-54 | 2.031038e-51 |
| MsG0480019348.01 | MsG0880041977.01 | 0.814039 | 1.887464e-51 | 1.252859e-48 |
| MsG0480020810.01 | MsG0880041977.01 | 0.800923 | 1.147502e-48 | 5.409437e-46 |
| MsG0480021133.01 | MsG0880041977.01 | 0.829123 | 6.137961e-55 | 6.224229e-52 |
| MsG0580024087.01 | MsG0880041977.01 | 0.809820 | 1.566388e-50 | 9.290432e-48 |
| MsG0580025432.01 | MsG0880041977.01 | 0.804961 | 1.679917e-49 | 8.779874e-47 |
| MsG0380015659.01 | MsG0880041977.01 | 0.833730 | 4.508661e-56 | 5.237699e-53 |
| MsG0380015660.01 | MsG0880041977.01 | 0.817104 | 3.921157e-52 | 2.829514e-49 |
| MsG0380016299.01 | MsG0880041977.01 | 0.818913 | 1.529543e-52 | 1.160129e-49 |
| MsG0380017901.01 | MsG0880041977.01 | 0.821019 | 5.042528e-53 | 4.055303e-50 |
| MsG0580026521.01 | MsG0880041977.01 | 0.806221 | 9.141268e-50 | 4.934391e-47 |
| MsG0580027751.01 | MsG0880041977.01 | 0.818272 | 2.137271e-52 | 1.592434e-49 |
| MsG0580027752.01 | MsG0880041977.01 | 0.832031 | 1.192329e-55 | 1.316795e-52 |
| MsG0580027753.01 | MsG0880041977.01 | 0.843949 | 1.022604e-58 | 1.625938e-55 |
| MsG0580029240.01 | MsG0880041977.01 | 0.821188 | 4.609930e-53 | 3.724698e-50 |
| MsG0580029359.01 | MsG0880041977.01 | 0.805962 | 1.036078e-49 | 5.555860e-47 |
| MsG0580029937.01 | MsG0880041977.01 | 0.817727 | 2.837900e-52 | 2.083240e-49 |
| MsG0580029938.01 | MsG0880041977.01 | 0.816821 | 4.538511e-52 | 3.249782e-49 |
| MsG0280006546.01 | MsG0880041977.01 | 0.805789 | 1.126738e-49 | 6.015148e-47 |
| MsG0280009232.01 | MsG0880041977.01 | 0.817832 | 2.687738e-52 | 1.978637e-49 |
| MsG0780036649.01 | MsG0880041977.01 | 0.838526 | 2.729989e-57 | 3.666286e-54 |
| MsG0780036839.01 | MsG0880041977.01 | 0.826502 | 2.619308e-54 | 2.460815e-51 |
| MsG0780038307.01 | MsG0880041977.01 | 0.800898 | 1.161168e-48 | 5.470458e-46 |
| MsG0780038313.01 | MsG0880041977.01 | 0.812170 | 4.851793e-51 | 3.062654e-48 |
| MsG0780038519.01 | MsG0880041977.01 | 0.822450 | 2.354246e-53 | 1.971252e-50 |
| MsG0780039373.01 | MsG0880041977.01 | 0.811224 | 7.790903e-51 | 4.795473e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0880041977.01 | MsG0080048387.01 | PPI |
| MsG0880041977.01 | MsG0880045796.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880041977.01.T01 | MTR_8g007675 | 95.331 | 257 | 12 | 0 | 25 | 281 | 30 | 286 | 0.0 | 506 |
| MsG0880041977.01.T01 | MTR_8g008505 | 67.021 | 282 | 91 | 2 | 1 | 281 | 1 | 281 | 7.59e-136 | 385 |
| MsG0880041977.01.T01 | MTR_8g008660 | 66.192 | 281 | 92 | 1 | 1 | 281 | 1 | 278 | 1.68e-133 | 379 |
| MsG0880041977.01.T01 | MTR_8g008500 | 66.197 | 284 | 93 | 2 | 1 | 281 | 1 | 284 | 9.29e-133 | 377 |
| MsG0880041977.01.T01 | MTR_3g464040 | 65.926 | 270 | 89 | 1 | 12 | 281 | 4 | 270 | 5.79e-125 | 357 |
| MsG0880041977.01.T01 | MTR_8g007670 | 62.891 | 256 | 94 | 1 | 27 | 281 | 7 | 262 | 1.88e-118 | 340 |
| MsG0880041977.01.T01 | MTR_5g018320 | 53.846 | 260 | 118 | 2 | 23 | 281 | 1 | 259 | 5.99e-101 | 296 |
| MsG0880041977.01.T01 | MTR_5g018300 | 55.859 | 256 | 111 | 2 | 27 | 281 | 8 | 262 | 7.08e-100 | 293 |
| MsG0880041977.01.T01 | MTR_8g007670 | 55.859 | 256 | 68 | 2 | 27 | 281 | 7 | 218 | 6.57e-96 | 281 |
| MsG0880041977.01.T01 | MTR_5g018280 | 52.344 | 256 | 119 | 3 | 27 | 281 | 8 | 261 | 1.25e-87 | 262 |
| MsG0880041977.01.T01 | MTR_8g079120 | 42.023 | 257 | 140 | 5 | 27 | 281 | 11 | 260 | 2.78e-65 | 205 |
| MsG0880041977.01.T01 | MTR_5g018365 | 41.245 | 257 | 142 | 5 | 27 | 281 | 12 | 261 | 1.85e-62 | 198 |
| MsG0880041977.01.T01 | MTR_5g018350 | 40.078 | 257 | 145 | 6 | 27 | 281 | 7 | 256 | 1.51e-58 | 187 |
| MsG0880041977.01.T01 | MTR_5g068100 | 37.109 | 256 | 155 | 3 | 27 | 281 | 30 | 280 | 9.30e-52 | 171 |
| MsG0880041977.01.T01 | MTR_7g015220 | 38.189 | 254 | 149 | 4 | 27 | 278 | 124 | 371 | 9.24e-50 | 168 |
| MsG0880041977.01.T01 | MTR_3g093730 | 35.507 | 276 | 159 | 4 | 4 | 278 | 25 | 282 | 1.09e-48 | 163 |
| MsG0880041977.01.T01 | MTR_8g079120 | 45.455 | 165 | 84 | 3 | 27 | 189 | 53 | 213 | 1.68e-45 | 153 |
| MsG0880041977.01.T01 | MTR_3g005410 | 33.206 | 262 | 168 | 4 | 20 | 279 | 87 | 343 | 4.26e-44 | 153 |
| MsG0880041977.01.T01 | MTR_3g093730 | 31.636 | 275 | 126 | 5 | 4 | 278 | 25 | 237 | 6.38e-36 | 129 |
| MsG0880041977.01.T01 | MTR_5g008130 | 56.962 | 79 | 34 | 0 | 203 | 281 | 2 | 80 | 7.23e-24 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880041977.01.T01 | AT3G50440 | 44.531 | 256 | 137 | 3 | 28 | 281 | 22 | 274 | 6.78e-75 | 230 |
| MsG0880041977.01.T01 | AT2G23620 | 43.023 | 258 | 140 | 5 | 27 | 281 | 9 | 262 | 1.75e-66 | 208 |
| MsG0880041977.01.T01 | AT2G23610 | 44.747 | 257 | 133 | 6 | 29 | 281 | 11 | 262 | 2.12e-65 | 205 |
| MsG0880041977.01.T01 | AT2G23600 | 42.636 | 258 | 141 | 5 | 27 | 281 | 9 | 262 | 1.49e-64 | 203 |
| MsG0880041977.01.T01 | AT2G23600 | 42.636 | 258 | 141 | 5 | 27 | 281 | 24 | 277 | 2.53e-64 | 203 |
| MsG0880041977.01.T01 | AT2G23580 | 41.762 | 261 | 146 | 4 | 24 | 281 | 5 | 262 | 2.40e-62 | 197 |
| MsG0880041977.01.T01 | AT2G23560 | 41.445 | 263 | 141 | 7 | 24 | 281 | 5 | 259 | 1.62e-61 | 195 |
| MsG0880041977.01.T01 | AT2G23550 | 40.840 | 262 | 147 | 5 | 24 | 281 | 5 | 262 | 9.24e-61 | 194 |
| MsG0880041977.01.T01 | AT2G23550 | 40.840 | 262 | 147 | 5 | 24 | 281 | 12 | 269 | 1.12e-60 | 194 |
| MsG0880041977.01.T01 | AT4G37150 | 39.689 | 257 | 149 | 4 | 27 | 281 | 3 | 255 | 1.66e-58 | 187 |
| MsG0880041977.01.T01 | AT2G23590 | 38.129 | 278 | 155 | 6 | 9 | 281 | 6 | 271 | 5.42e-57 | 184 |
| MsG0880041977.01.T01 | AT5G10300 | 39.216 | 255 | 152 | 2 | 27 | 281 | 6 | 257 | 1.04e-54 | 178 |
| MsG0880041977.01.T01 | AT5G58310 | 36.047 | 258 | 155 | 3 | 27 | 278 | 5 | 258 | 2.99e-53 | 174 |
| MsG0880041977.01.T01 | AT3G29770 | 39.921 | 253 | 146 | 3 | 28 | 279 | 139 | 386 | 2.31e-51 | 173 |
| MsG0880041977.01.T01 | AT2G23610 | 39.844 | 256 | 106 | 6 | 27 | 281 | 9 | 217 | 8.45e-51 | 166 |
| MsG0880041977.01.T01 | AT1G33990 | 35.827 | 254 | 156 | 4 | 28 | 279 | 98 | 346 | 2.96e-50 | 169 |
| MsG0880041977.01.T01 | AT4G16690 | 37.209 | 258 | 140 | 5 | 27 | 276 | 12 | 255 | 1.69e-49 | 164 |
| MsG0880041977.01.T01 | AT4G09900 | 33.858 | 254 | 161 | 4 | 28 | 279 | 99 | 347 | 2.72e-48 | 164 |
| MsG0880041977.01.T01 | AT1G26360 | 37.154 | 253 | 153 | 3 | 28 | 279 | 190 | 437 | 9.90e-48 | 165 |
| MsG0880041977.01.T01 | AT3G10870 | 35.178 | 253 | 161 | 2 | 27 | 278 | 20 | 270 | 1.33e-47 | 160 |
| MsG0880041977.01.T01 | AT2G23550 | 36.398 | 261 | 131 | 5 | 24 | 281 | 5 | 233 | 1.83e-46 | 156 |
| MsG0880041977.01.T01 | AT1G69240 | 36.078 | 255 | 155 | 4 | 28 | 279 | 188 | 437 | 3.63e-46 | 160 |
| MsG0880041977.01.T01 | AT2G23600 | 44.172 | 163 | 87 | 3 | 27 | 186 | 24 | 185 | 1.32e-41 | 142 |
| MsG0880041977.01.T01 | AT2G23550 | 44.242 | 165 | 87 | 3 | 24 | 184 | 12 | 175 | 1.21e-40 | 140 |
| MsG0880041977.01.T01 | AT2G23580 | 40.625 | 192 | 108 | 3 | 24 | 212 | 5 | 193 | 2.52e-40 | 139 |
| MsG0880041977.01.T01 | AT5G10300 | 41.358 | 162 | 95 | 0 | 27 | 188 | 6 | 167 | 1.45e-38 | 134 |
| MsG0880041977.01.T01 | AT4G37140 | 51.456 | 103 | 50 | 0 | 27 | 129 | 3 | 105 | 5.56e-36 | 125 |
| MsG0880041977.01.T01 | AT2G23570 | 40.884 | 181 | 102 | 3 | 103 | 281 | 1 | 178 | 1.18e-35 | 126 |
| MsG0880041977.01.T01 | AT4G37140 | 50.000 | 90 | 45 | 0 | 27 | 116 | 3 | 92 | 5.37e-30 | 109 |
| MsG0880041977.01.T01 | AT3G29770 | 49.351 | 77 | 39 | 0 | 23 | 99 | 134 | 210 | 9.04e-20 | 87.0 |
Find 59 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAACCATTGATGTCATTTA+TGG | 0.077530 | 8:-2041352 | MsG0880041977.01.T01:CDS |
| ATCTTGGATGCCATGAATTT+TGG | 0.212352 | 8:+2040463 | None:intergenic |
| AGTTCAACATCTTTATAAAT+TGG | 0.216142 | 8:+2040263 | None:intergenic |
| TAGAAGGATTAGTTCTTTAA+TGG | 0.232720 | 8:-2040545 | MsG0880041977.01.T01:CDS |
| GCACTATTAACACAAATTAT+AGG | 0.241233 | 8:+2041537 | None:intergenic |
| AGGATAGAACTAAGCTTCTT+TGG | 0.249133 | 8:+2040059 | None:intergenic |
| TACTCTTCCATTTCTATCAT+TGG | 0.292250 | 8:+2040217 | None:intergenic |
| ACAAGAATTACCTTCTCATT+TGG | 0.314835 | 8:+2041318 | None:intergenic |
| TGAATCTCTTGTACTTGTAT+TGG | 0.323609 | 8:+2041393 | None:intergenic |
| ACAATTGAATTGGCTGGTTC+AGG | 0.332244 | 8:-2041423 | MsG0880041977.01.T01:CDS |
| TAATGTTACAACAATTGAAT+TGG | 0.361515 | 8:-2041433 | MsG0880041977.01.T01:CDS |
| CAAACCTGCAACTGCTAGAT+TGG | 0.368595 | 8:-2040491 | MsG0880041977.01.T01:CDS |
| CTAGCAGTTGCAGGTTTGTT+GGG | 0.377021 | 8:+2040496 | None:intergenic |
| TGAGAAGGTGGAAGTTATAG+AGG | 0.386335 | 8:-2040111 | MsG0880041977.01.T01:CDS |
| CCATCTTGTAGCAAGCTAGA+AGG | 0.392296 | 8:-2040561 | MsG0880041977.01.T01:intron |
| TCTAGCAGTTGCAGGTTTGT+TGG | 0.395041 | 8:+2040495 | None:intergenic |
| TGGTGCATGGTGTTGGTATA+AGG | 0.400591 | 8:-2041484 | MsG0880041977.01.T01:CDS |
| ATTACCTCTTGAAGAACAAC+AGG | 0.404228 | 8:+2041183 | None:intergenic |
| ATTCTTGTTGGTCATAGTCT+TGG | 0.409610 | 8:-2041303 | MsG0880041977.01.T01:CDS |
| CCAACCAATCTAGCAGTTGC+AGG | 0.423936 | 8:+2040487 | None:intergenic |
| AGATGTTGAACTATTGTTGA+AGG | 0.427375 | 8:-2040252 | MsG0880041977.01.T01:CDS |
| ATAACTTCCACCTTCTCAAA+TGG | 0.431183 | 8:+2040116 | None:intergenic |
| AAATTTATAAGATGATGAAA+AGG | 0.434435 | 8:-2041602 | None:intergenic |
| ATTGGTTGGACCAAAATTCA+TGG | 0.434970 | 8:-2040473 | MsG0880041977.01.T01:CDS |
| ACGGTTACCAATGATAGAAA+TGG | 0.436364 | 8:-2040224 | MsG0880041977.01.T01:CDS |
| AATGAGAAGGTAATTCTTGT+TGG | 0.438408 | 8:-2041315 | MsG0880041977.01.T01:CDS |
| GGTGGAAGTTATAGAGGATT+CGG | 0.439015 | 8:-2040105 | MsG0880041977.01.T01:CDS |
| CTTGTTGGTCATAGTCTTGG+TGG | 0.441219 | 8:-2041300 | MsG0880041977.01.T01:CDS |
| GTTACAACAATTGAATTGGC+TGG | 0.460288 | 8:-2041429 | MsG0880041977.01.T01:CDS |
| CCTGCAACTGCTAGATTGGT+TGG | 0.480634 | 8:-2040487 | MsG0880041977.01.T01:CDS |
| TTGTTGGTCATAGTCTTGGT+GGG | 0.483396 | 8:-2041299 | MsG0880041977.01.T01:CDS |
| ACATCTTTATAAATTGGTAC+AGG | 0.484656 | 8:+2040269 | None:intergenic |
| AGAATTACCTTCTCATTTGG+AGG | 0.493805 | 8:+2041321 | None:intergenic |
| AATTTATAAGATGATGAAAA+GGG | 0.497143 | 8:-2041601 | None:intergenic |
| GCAACTATGCTTAAATCAGC+TGG | 0.513884 | 8:-2041459 | MsG0880041977.01.T01:CDS |
| GGTGTCTACATCTGTTGCTA+TGG | 0.514872 | 8:-2041277 | MsG0880041977.01.T01:CDS |
| AAATTGGTACAGGTCTCACT+AGG | 0.515680 | 8:+2040279 | None:intergenic |
| GTCTCACTAGGGACAATGCA+AGG | 0.519627 | 8:+2040291 | None:intergenic |
| TGGTGATAATTGATACATCT+TGG | 0.534510 | 8:+2040447 | None:intergenic |
| AAGTGGTCCATTTGAGAAGG+TGG | 0.534667 | 8:-2040123 | MsG0880041977.01.T01:CDS |
| CTGATTCATGGTGGAAGCCA+TGG | 0.542667 | 8:-2041504 | MsG0880041977.01.T01:CDS |
| ATACCCTGTTGTTCTTCAAG+AGG | 0.545354 | 8:-2041187 | MsG0880041977.01.T01:intron |
| GATTCCATAAATGACATCAA+TGG | 0.557899 | 8:+2041348 | None:intergenic |
| GAAGCCATGGTGCATGGTGT+TGG | 0.558171 | 8:-2041491 | MsG0880041977.01.T01:CDS |
| ATCTCTTCCTCCAAATGAGA+AGG | 0.564459 | 8:-2041328 | MsG0880041977.01.T01:CDS |
| AACATATACTCCACCTCAGA+TGG | 0.576227 | 8:+2040427 | None:intergenic |
| TGTTGGTCATAGTCTTGGTG+GGG | 0.581014 | 8:-2041298 | MsG0880041977.01.T01:CDS |
| GAAGAACAACAGGGTATGAG+AGG | 0.589704 | 8:+2041193 | None:intergenic |
| TAACAAAAGATTTACAAATG+TGG | 0.596934 | 8:-2040157 | MsG0880041977.01.T01:CDS |
| GAGAAGTGGTCCATTTGAGA+AGG | 0.599756 | 8:-2040126 | MsG0880041977.01.T01:CDS |
| AATTGGTACAGGTCTCACTA+GGG | 0.640202 | 8:+2040280 | None:intergenic |
| TATAGAGGATTCGGATCACA+TGG | 0.642089 | 8:-2040096 | MsG0880041977.01.T01:CDS |
| ATGGTGGAAGCCATGGTGCA+TGG | 0.643508 | 8:-2041497 | MsG0880041977.01.T01:CDS |
| ACTATTGTTGAAGGAAACAA+CGG | 0.645669 | 8:-2040243 | MsG0880041977.01.T01:CDS |
| TCTCACTAGGGACAATGCAA+GGG | 0.646794 | 8:+2040292 | None:intergenic |
| TATACCAACACCATGCACCA+TGG | 0.667607 | 8:+2041487 | None:intergenic |
| GTATCAATTATCACCATCTG+AGG | 0.675132 | 8:-2040440 | MsG0880041977.01.T01:intron |
| ATGTGGATGATTGAGAGAAG+TGG | 0.678103 | 8:-2040140 | MsG0880041977.01.T01:CDS |
| TTACCTCTTGAAGAACAACA+GGG | 0.771294 | 8:+2041184 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATGAATAATTTAATTTTGT+GGG | + | Chr8:2040508-2040527 | None:intergenic | 10.0% |
| !!! | TGTTATTTTTAATTTAAATG+AGG | + | Chr8:2040554-2040573 | None:intergenic | 10.0% |
| !!! | TTATGAATAATTTAATTTTG+TGG | + | Chr8:2040509-2040528 | None:intergenic | 10.0% |
| !! | CATAATAATAATAATATGCA+AGG | - | Chr8:2040849-2040868 | MsG0880041977.01.T01:intron | 15.0% |
| !! | TACATATATATTACTTTGTT+GGG | - | Chr8:2040605-2040624 | MsG0880041977.01.T01:intron | 15.0% |
| !!! | AACATATTTAATCCTTTTTT+AGG | - | Chr8:2040756-2040775 | MsG0880041977.01.T01:intron | 15.0% |
| !!! | ATAAAAATTTAACTTTGACT+TGG | - | Chr8:2041230-2041249 | MsG0880041977.01.T01:CDS | 15.0% |
| !!! | TAAATATAGTTTATCGTTTT+GGG | - | Chr8:2040629-2040648 | MsG0880041977.01.T01:intron | 15.0% |
| !!! | TATATACCTTTTGAATTTTA+TGG | - | Chr8:2040659-2040678 | MsG0880041977.01.T01:intron | 15.0% |
| !!! | TTAAATATAGTTTATCGTTT+TGG | - | Chr8:2040628-2040647 | MsG0880041977.01.T01:intron | 15.0% |
| !!! | TTAATCAAAGTTTAAAATTG+TGG | + | Chr8:2040958-2040977 | None:intergenic | 15.0% |
| !!! | TTGCTTATGATAAATTTTTT+AGG | + | Chr8:2041434-2041453 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTTTTTGTGG+TGG | + | Chr8:2040894-2040913 | None:intergenic | 15.0% |
| !! | AGTTCAACATCTTTATAAAT+TGG | + | Chr8:2041365-2041384 | None:intergenic | 20.0% |
| !! | CTACATATATATTACTTTGT+TGG | - | Chr8:2040604-2040623 | MsG0880041977.01.T01:intron | 20.0% |
| !! | TAACAAAAGATTTACAAATG+TGG | - | Chr8:2041468-2041487 | MsG0880041977.01.T01:CDS | 20.0% |
| !! | TAATGTTACAACAATTGAAT+TGG | - | Chr8:2040192-2040211 | MsG0880041977.01.T01:CDS | 20.0% |
| !! | TTATAAACAACTCCTAAAAA+AGG | + | Chr8:2040771-2040790 | None:intergenic | 20.0% |
| !!! | CCAATGACATATTTTAAAAA+TGG | - | Chr8:2040686-2040705 | MsG0880041977.01.T01:intron | 20.0% |
| !!! | CCATTTTTAAAATATGTCAT+TGG | + | Chr8:2040689-2040708 | None:intergenic | 20.0% |
| !!! | GAATTTTAAAAATTGAGTGA+GGG | - | Chr8:2040728-2040747 | MsG0880041977.01.T01:intron | 20.0% |
| !!! | TGAATTTTAAAAATTGAGTG+AGG | - | Chr8:2040727-2040746 | MsG0880041977.01.T01:intron | 20.0% |
| ! | AAATCCTACACATTTCAATT+TGG | + | Chr8:2041311-2041330 | None:intergenic | 25.0% |
| ! | ACATCTTTATAAATTGGTAC+AGG | + | Chr8:2041359-2041378 | None:intergenic | 25.0% |
| ! | GCACTATTAACACAAATTAT+AGG | + | Chr8:2040091-2040110 | None:intergenic | 25.0% |
| !! | ACAAAGTTTTTCTTCTTTGA+TGG | - | Chr8:2041105-2041124 | MsG0880041977.01.T01:intron | 25.0% |
| !!! | ACTTTTTTGCAATCTTTAGA+AGG | + | Chr8:2041589-2041608 | None:intergenic | 25.0% |
| !!! | TAGAAGGATTAGTTCTTTAA+TGG | - | Chr8:2041080-2041099 | MsG0880041977.01.T01:intron | 25.0% |
| AACTCCAAATTGAAATGTGT+AGG | - | Chr8:2041304-2041323 | MsG0880041977.01.T01:CDS | 30.0% | |
| AATGAGAAGGTAATTCTTGT+TGG | - | Chr8:2040310-2040329 | MsG0880041977.01.T01:intron | 30.0% | |
| ACAAGAATTACCTTCTCATT+TGG | + | Chr8:2040310-2040329 | None:intergenic | 30.0% | |
| ACTATTGTTGAAGGAAACAA+CGG | - | Chr8:2041382-2041401 | MsG0880041977.01.T01:CDS | 30.0% | |
| AGATGTTGAACTATTGTTGA+AGG | - | Chr8:2041373-2041392 | MsG0880041977.01.T01:CDS | 30.0% | |
| ATAATAATATGCAAGGTTCG+AGG | - | Chr8:2040856-2040875 | MsG0880041977.01.T01:intron | 30.0% | |
| GATTCCATAAATGACATCAA+TGG | + | Chr8:2040280-2040299 | None:intergenic | 30.0% | |
| GGTAGTCCATAAAATTCAAA+AGG | + | Chr8:2040668-2040687 | None:intergenic | 30.0% | |
| TACTCTTCCATTTCTATCAT+TGG | + | Chr8:2041411-2041430 | None:intergenic | 30.0% | |
| TGAATCTCTTGTACTTGTAT+TGG | + | Chr8:2040235-2040254 | None:intergenic | 30.0% | |
| TGGTGATAATTGATACATCT+TGG | + | Chr8:2041181-2041200 | None:intergenic | 30.0% | |
| TGTGGAATTCCTAAAATAGT+GGG | + | Chr8:2040940-2040959 | None:intergenic | 30.0% | |
| TTGTGGAATTCCTAAAATAG+TGG | + | Chr8:2040941-2040960 | None:intergenic | 30.0% | |
| ! | TGAACCATTGATGTCATTTA+TGG | - | Chr8:2040273-2040292 | MsG0880041977.01.T01:CDS | 30.0% |
| ! | TTCATAACTCCCACTATTTT+AGG | - | Chr8:2040928-2040947 | MsG0880041977.01.T01:intron | 30.0% |
| ACGGTTACCAATGATAGAAA+TGG | - | Chr8:2041401-2041420 | MsG0880041977.01.T01:CDS | 35.0% | |
| AGAATTACCTTCTCATTTGG+AGG | + | Chr8:2040307-2040326 | None:intergenic | 35.0% | |
| AGGATAGAACTAAGCTTCTT+TGG | + | Chr8:2041569-2041588 | None:intergenic | 35.0% | |
| ATAACTTCCACCTTCTCAAA+TGG | + | Chr8:2041512-2041531 | None:intergenic | 35.0% | |
| ATTACCTCTTGAAGAACAAC+AGG | + | Chr8:2040445-2040464 | None:intergenic | 35.0% | |
| ATTCTTGTTGGTCATAGTCT+TGG | - | Chr8:2040322-2040341 | MsG0880041977.01.T01:intron | 35.0% | |
| ATTGGTTGGACCAAAATTCA+TGG | - | Chr8:2041152-2041171 | MsG0880041977.01.T01:intron | 35.0% | |
| GGTGGAGTATATGTTAATGT+TGG | - | Chr8:2041206-2041225 | MsG0880041977.01.T01:CDS | 35.0% | |
| GTATCAATTATCACCATCTG+AGG | - | Chr8:2041185-2041204 | MsG0880041977.01.T01:intron | 35.0% | |
| GTTACAACAATTGAATTGGC+TGG | - | Chr8:2040196-2040215 | MsG0880041977.01.T01:CDS | 35.0% | |
| TTACCTCTTGAAGAACAACA+GGG | + | Chr8:2040444-2040463 | None:intergenic | 35.0% | |
| ! | ATCTTGGATGCCATGAATTT+TGG | + | Chr8:2041165-2041184 | None:intergenic | 35.0% |
| !!! | AATTTTGTGCTGATTCATGG+TGG | - | Chr8:2040112-2040131 | MsG0880041977.01.T01:CDS | 35.0% |
| !!! | ACTGCAACTGAGATTTTTTG+TGG | + | Chr8:2040382-2040401 | None:intergenic | 35.0% |
| !!! | GCAAATTTTGTGCTGATTCA+TGG | - | Chr8:2040109-2040128 | MsG0880041977.01.T01:CDS | 35.0% |
| AAATTGGTACAGGTCTCACT+AGG | + | Chr8:2041349-2041368 | None:intergenic | 40.0% | |
| AACATATACTCCACCTCAGA+TGG | + | Chr8:2041201-2041220 | None:intergenic | 40.0% | |
| AAGGTTCGAGGTTCAAACAT+CGG | - | Chr8:2040868-2040887 | MsG0880041977.01.T01:intron | 40.0% | |
| AATTGGTACAGGTCTCACTA+GGG | + | Chr8:2041348-2041367 | None:intergenic | 40.0% | |
| ATACCCTGTTGTTCTTCAAG+AGG | - | Chr8:2040438-2040457 | MsG0880041977.01.T01:intron | 40.0% | |
| ATCTCTTCCTCCAAATGAGA+AGG | - | Chr8:2040297-2040316 | MsG0880041977.01.T01:CDS | 40.0% | |
| ATGTGGATGATTGAGAGAAG+TGG | - | Chr8:2041485-2041504 | MsG0880041977.01.T01:CDS | 40.0% | |
| GCAACTATGCTTAAATCAGC+TGG | - | Chr8:2040166-2040185 | MsG0880041977.01.T01:CDS | 40.0% | |
| GGTGGAAGTTATAGAGGATT+CGG | - | Chr8:2041520-2041539 | MsG0880041977.01.T01:CDS | 40.0% | |
| TATAGAGGATTCGGATCACA+TGG | - | Chr8:2041529-2041548 | MsG0880041977.01.T01:CDS | 40.0% | |
| TCAATTATCACCATCTGAGG+TGG | - | Chr8:2041188-2041207 | MsG0880041977.01.T01:CDS | 40.0% | |
| TGAGAAGGTGGAAGTTATAG+AGG | - | Chr8:2041514-2041533 | MsG0880041977.01.T01:CDS | 40.0% | |
| ! | ACAATTGAATTGGCTGGTTC+AGG | - | Chr8:2040202-2040221 | MsG0880041977.01.T01:CDS | 40.0% |
| ! | TGAGCTTAGTTCAGTTGGTA+TGG | - | Chr8:2040820-2040839 | MsG0880041977.01.T01:intron | 40.0% |
| ! | TTGTTGGTCATAGTCTTGGT+GGG | - | Chr8:2040326-2040345 | MsG0880041977.01.T01:intron | 40.0% |
| AAGTGGTCCATTTGAGAAGG+TGG | - | Chr8:2041502-2041521 | MsG0880041977.01.T01:CDS | 45.0% | |
| CAAACCTGCAACTGCTAGAT+TGG | - | Chr8:2041134-2041153 | MsG0880041977.01.T01:intron | 45.0% | |
| CCATCTTGTAGCAAGCTAGA+AGG | - | Chr8:2041064-2041083 | MsG0880041977.01.T01:intron | 45.0% | |
| GAAGAACAACAGGGTATGAG+AGG | + | Chr8:2040435-2040454 | None:intergenic | 45.0% | |
| GAGAAGTGGTCCATTTGAGA+AGG | - | Chr8:2041499-2041518 | MsG0880041977.01.T01:CDS | 45.0% | |
| GGTGTCTACATCTGTTGCTA+TGG | - | Chr8:2040348-2040367 | MsG0880041977.01.T01:intron | 45.0% | |
| TATACCAACACCATGCACCA+TGG | + | Chr8:2040141-2040160 | None:intergenic | 45.0% | |
| TCTAGCAGTTGCAGGTTTGT+TGG | + | Chr8:2041133-2041152 | None:intergenic | 45.0% | |
| TCTCACTAGGGACAATGCAA+GGG | + | Chr8:2041336-2041355 | None:intergenic | 45.0% | |
| ! | CTAGCAGTTGCAGGTTTGTT+GGG | + | Chr8:2041132-2041151 | None:intergenic | 45.0% |
| ! | CTTGTTGGTCATAGTCTTGG+TGG | - | Chr8:2040325-2040344 | MsG0880041977.01.T01:intron | 45.0% |
| ! | TGTTGGTCATAGTCTTGGTG+GGG | - | Chr8:2040327-2040346 | MsG0880041977.01.T01:intron | 45.0% |
| !! | CCTTCTAGCTTGCTACAAGA+TGG | + | Chr8:2041067-2041086 | None:intergenic | 45.0% |
| !! | TGGTGCATGGTGTTGGTATA+AGG | - | Chr8:2040141-2040160 | MsG0880041977.01.T01:CDS | 45.0% |
| !!! | TATTTTTTTTTTTTTTTTTG+TGG | + | Chr8:2040897-2040916 | None:intergenic | 5.0% |
| CCAACCAATCTAGCAGTTGC+AGG | + | Chr8:2041141-2041160 | None:intergenic | 50.0% | |
| CCAACTGAACTAAGCTCACG+AGG | + | Chr8:2040818-2040837 | None:intergenic | 50.0% | |
| CCTCGTGAGCTTAGTTCAGT+TGG | - | Chr8:2040815-2040834 | MsG0880041977.01.T01:intron | 50.0% | |
| CCTGCAACTGCTAGATTGGT+TGG | - | Chr8:2041138-2041157 | MsG0880041977.01.T01:intron | 50.0% | |
| GTCTCACTAGGGACAATGCA+AGG | + | Chr8:2041337-2041356 | None:intergenic | 50.0% | |
| ! | CTGATTCATGGTGGAAGCCA+TGG | - | Chr8:2040121-2040140 | MsG0880041977.01.T01:CDS | 50.0% |
| GAAGCCATGGTGCATGGTGT+TGG | - | Chr8:2040134-2040153 | MsG0880041977.01.T01:CDS | 55.0% | |
| ! | ATGGTGGAAGCCATGGTGCA+TGG | - | Chr8:2040128-2040147 | MsG0880041977.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 2040034 | 2041613 | 2040034 | ID=MsG0880041977.01;Name=MsG0880041977.01 |
| Chr8 | mRNA | 2040034 | 2041613 | 2040034 | ID=MsG0880041977.01.T01;Parent=MsG0880041977.01;Name=MsG0880041977.01.T01;_AED=0.49;_eAED=0.49;_QI=0|0|0|1|1|1|3|0|281 |
| Chr8 | exon | 2041188 | 2041613 | 2041188 | ID=MsG0880041977.01.T01:exon:1260;Parent=MsG0880041977.01.T01 |
| Chr8 | exon | 2040441 | 2040572 | 2040441 | ID=MsG0880041977.01.T01:exon:1259;Parent=MsG0880041977.01.T01 |
| Chr8 | exon | 2040034 | 2040321 | 2040034 | ID=MsG0880041977.01.T01:exon:1258;Parent=MsG0880041977.01.T01 |
| Chr8 | CDS | 2041188 | 2041613 | 2041188 | ID=MsG0880041977.01.T01:cds;Parent=MsG0880041977.01.T01 |
| Chr8 | CDS | 2040441 | 2040572 | 2040441 | ID=MsG0880041977.01.T01:cds;Parent=MsG0880041977.01.T01 |
| Chr8 | CDS | 2040034 | 2040321 | 2040034 | ID=MsG0880041977.01.T01:cds;Parent=MsG0880041977.01.T01 |
| Gene Sequence |
| Protein sequence |
