AlfalfaGEDB | MsG0680034969.01

M. sativa cultivar ZhongmuNo.1 / MsG0680034969.01

KEGG: -
GO: GO:0004553 GO:0005975
PFAM: PF00232

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680034969.01.T01	XP_003620203.1	85.217	575	27	3	117	690	1	518	0	998

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680034969.01.T01	B8AVF0	59.75	559	158	3	126	684	19	510	0	666

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680034969.01.T01	G7KKS5	85.217	575	27	3	117	690	1	518	0.0	998

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048134.01	MsG0680034969.01	0.817209	3.713008e-52	2.687077e-49
MsG0180001029.01	MsG0680034969.01	0.808222	3.443243e-50	1.957672e-47
MsG0180001503.01	MsG0680034969.01	0.817349	3.453580e-52	2.508910e-49
MsG0180001513.01	MsG0680034969.01	0.808468	3.051446e-50	1.746188e-47
MsG0180001515.01	MsG0680034969.01	0.826348	2.850356e-54	2.666338e-51
MsG0180001797.01	MsG0680034969.01	0.805683	1.185993e-49	6.314409e-47
MsG0180003237.01	MsG0680034969.01	0.806446	8.195913e-50	4.449412e-47
MsG0180003320.01	MsG0680034969.01	0.809444	1.886440e-50	1.107756e-47
MsG0180003375.01	MsG0680034969.01	0.823030	1.725020e-53	1.468363e-50
MsG0180003980.01	MsG0680034969.01	-0.803255	3.803678e-49	1.902456e-46

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0680034969.01.T01	MTR_6g078450	85.217	575	27	3	117	690	1	518	998
MsG0680034969.01.T01	MTR_6g078380	75.993	579	80	4	117	693	1	522	885
MsG0680034969.01.T01	MTR_6g078450	84.241	514	23	3	117	629	1	457	877
MsG0680034969.01.T01	MTR_6g078330	68.182	572	125	2	122	693	8	522	807
MsG0680034969.01.T01	MTR_3g028720	61.661	566	160	2	121	686	8	516	726
MsG0680034969.01.T01	MTR_4g066580	61.471	571	158	4	120	686	5	517	720
MsG0680034969.01.T01	MTR_2g098520	63.925	535	136	2	150	684	33	510	719
MsG0680034969.01.T01	MTR_2g098540	60.526	570	162	5	115	684	1	507	716
MsG0680034969.01.T01	MTR_2g098790	60.595	571	165	3	117	684	1	514	716
MsG0680034969.01.T01	MTR_4g066590	61.170	564	158	3	122	685	8	510	707

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680034969.01.T01	AT5G44640	51.356	553	199	6	141	685	14	504	0.0	573
MsG0680034969.01.T01	AT5G42260	53.383	532	185	5	148	678	28	497	0.0	572
MsG0680034969.01.T01	AT2G44450	51.845	542	199	4	144	685	24	503	0.0	569
MsG0680034969.01.T01	AT2G44480	49.813	536	211	3	147	682	31	508	0.0	549
MsG0680034969.01.T01	AT2G44480	49.813	536	211	3	147	682	62	539	0.0	549
MsG0680034969.01.T01	AT3G60130	50.936	534	199	5	151	683	30	501	0.0	540
MsG0680034969.01.T01	AT2G25630	47.965	565	207	7	129	685	1	486	0.0	529
MsG0680034969.01.T01	AT1G26560	48.519	540	215	5	147	683	28	507	2.09e-180	523
MsG0680034969.01.T01	AT5G24550	46.032	567	240	7	124	684	5	511	2.89e-177	516
MsG0680034969.01.T01	AT1G47600	48.889	540	207	7	146	684	40	511	6.31e-177	514

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Find 155 sgRNAs with CRISPR-Local

Find 470 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATATCCGAAAATGTC+TGG	0.350208	6:-97189513	MsG0680034969.01.T01:CDS
AAACCAAAGGTTGCGTAGCT+TGG	0.381589	6:+97195269	None:intergenic
AAAGATATCCGAAAATGTCT+GGG	0.573003	6:-97189512	MsG0680034969.01.T01:CDS
AAAGTATATTCCAAACCTCA+TGG	0.574623	6:+97189557	None:intergenic
AAATATACAAACTATAGTCA+TGG	0.600480	6:-97195237	MsG0680034969.01.T01:CDS
AACATAACCATGTTTAGCAA+AGG	0.556534	6:+97192869	None:intergenic
AACCAAAGGTTGCGTAGCTT+GGG	0.430683	6:+97195270	None:intergenic
AACCCTCATTGTATCTTCTA+GGG	0.489013	6:+97189967	None:intergenic
AACTTCATCATCAGCTTACC+AGG	0.475107	6:-97195078	MsG0680034969.01.T01:CDS
AAGATAAAAGACAGAAGCAA+TGG	0.510304	6:-97194268	MsG0680034969.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGATATCCGAAAATGTC+TGG	-	Chr6:97197425-97197444	MsG0680034969.01.T01:CDS	30.0%
AAAGATATCCGAAAATGTCT+GGG	-	Chr6:97197426-97197445	MsG0680034969.01.T01:CDS	30.0%
AAAGCCTAGAAATATTCTCA+CGG	-	Chr6:97190086-97190105	MsG0680034969.01.T01:intron	30.0%
AAAGTATATTCCAAACCTCA+TGG	+	Chr6:97197384-97197403	None:intergenic	30.0%
AAATATGTGTAAAAAGCCGT+TGG	+	Chr6:97193310-97193329	None:intergenic	30.0%
AAATATTCTCACGGATTTGA+AGG	-	Chr6:97190095-97190114	MsG0680034969.01.T01:intron	30.0%
AAATCCGTGAGAATATTTCT+AGG	+	Chr6:97190093-97190112	None:intergenic	30.0%
AACATAACCATGTTTAGCAA+AGG	+	Chr6:97194072-97194091	None:intergenic	30.0%
AACTTTCTTCAAGTCCATTA+TGG	+	Chr6:97191299-97191318	None:intergenic	30.0%
AAGATAAAAGACAGAAGCAA+TGG	-	Chr6:97192670-97192689	MsG0680034969.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	97189455	97197505	97189455	ID=MsG0680034969.01;Name=MsG0680034969.01
Chr6	mRNA	97189455	97197505	97189455	ID=MsG0680034969.01.T01;Parent=MsG0680034969.01;Name=MsG0680034969.01.T01;_AED=0.55;_eAED=0.55;_QI=0\|0\|0\|0.86\|0.71\|0.8\|15\|0\|693
Chr6	exon	97197281	97197505	97197281	ID=MsG0680034969.01.T01:exon:7227;Parent=MsG0680034969.01.T01
Chr6	exon	97196719	97196787	97196719	ID=MsG0680034969.01.T01:exon:7226;Parent=MsG0680034969.01.T01
Chr6	exon	97195007	97195294	97195007	ID=MsG0680034969.01.T01:exon:7225;Parent=MsG0680034969.01.T01
Chr6	exon	97194804	97194926	97194804	ID=MsG0680034969.01.T01:exon:7224;Parent=MsG0680034969.01.T01
Chr6	exon	97194234	97194338	97194234	ID=MsG0680034969.01.T01:exon:7223;Parent=MsG0680034969.01.T01
Chr6	exon	97194073	97194148	97194073	ID=MsG0680034969.01.T01:exon:7222;Parent=MsG0680034969.01.T01
Chr6	exon	97193254	97193331	97193254	ID=MsG0680034969.01.T01:exon:7221;Parent=MsG0680034969.01.T01
Chr6	exon	97193073	97193160	97193073	ID=MsG0680034969.01.T01:exon:7220;Parent=MsG0680034969.01.T01
Chr6	exon	97192722	97192977	97192722	ID=MsG0680034969.01.T01:exon:7219;Parent=MsG0680034969.01.T01
Chr6	exon	97191445	97191560	97191445	ID=MsG0680034969.01.T01:exon:7218;Parent=MsG0680034969.01.T01
Chr6	exon	97190642	97190859	97190642	ID=MsG0680034969.01.T01:exon:7217;Parent=MsG0680034969.01.T01
Chr6	exon	97190370	97190401	97190370	ID=MsG0680034969.01.T01:exon:7216;Parent=MsG0680034969.01.T01
Chr6	exon	97190151	97190253	97190151	ID=MsG0680034969.01.T01:exon:7215;Parent=MsG0680034969.01.T01
Chr6	exon	97189923	97190031	97189923	ID=MsG0680034969.01.T01:exon:7214;Parent=MsG0680034969.01.T01
Chr6	exon	97189455	97189650	97189455	ID=MsG0680034969.01.T01:exon:7213;Parent=MsG0680034969.01.T01
Chr6	CDS	97197281	97197505	97197281	ID=MsG0680034969.01.T01:cds;Parent=MsG0680034969.01.T01
Chr6	CDS	97196719	97196787	97196719	ID=MsG0680034969.01.T01:cds;Parent=MsG0680034969.01.T01
Chr6	CDS	97195007	97195294	97195007	ID=MsG0680034969.01.T01:cds;Parent=MsG0680034969.01.T01
Chr6	CDS	97194804	97194926	97194804	ID=MsG0680034969.01.T01:cds;Parent=MsG0680034969.01.T01
Chr6	CDS	97194234	97194338	97194234	ID=MsG0680034969.01.T01:cds;Parent=MsG0680034969.01.T01
Chr6	CDS	97194073	97194148	97194073	ID=MsG0680034969.01.T01:cds;Parent=MsG0680034969.01.T01
Chr6	CDS	97193254	97193331	97193254	ID=MsG0680034969.01.T01:cds;Parent=MsG0680034969.01.T01
Chr6	CDS	97193073	97193160	97193073	ID=MsG0680034969.01.T01:cds;Parent=MsG0680034969.01.T01
Chr6	CDS	97192722	97192977	97192722	ID=MsG0680034969.01.T01:cds;Parent=MsG0680034969.01.T01
Chr6	CDS	97191445	97191560	97191445	ID=MsG0680034969.01.T01:cds;Parent=MsG0680034969.01.T01
Chr6	CDS	97190642	97190859	97190642	ID=MsG0680034969.01.T01:cds;Parent=MsG0680034969.01.T01
Chr6	CDS	97190370	97190401	97190370	ID=MsG0680034969.01.T01:cds;Parent=MsG0680034969.01.T01
Chr6	CDS	97190151	97190253	97190151	ID=MsG0680034969.01.T01:cds;Parent=MsG0680034969.01.T01
Chr6	CDS	97189923	97190031	97189923	ID=MsG0680034969.01.T01:cds;Parent=MsG0680034969.01.T01
Chr6	CDS	97189455	97189650	97189455	ID=MsG0680034969.01.T01:cds;Parent=MsG0680034969.01.T01

Gene Sequence

>MsG0680034969.01.T01

ATGTGGCGGAGGATGGCGTTGAGCCGAAACCGGGAAAAAACAAAGCCTCCGTCCAGCGTAGGTGTAGGTTCCGGCGAAGGCAAACCAACCAATGATGTGAAGTTTAAAGTGAAAATTCCTTTTCAAGTTGAAGCTCACATAGTTCACAATCAAGCAAAACTGGTACCTACCGGTACCTTTGAAGAGAAGCCTAAACCGGTACCTACCGGTGTTCGTGTTATTCAAATGGCGCAAGGGGCAAAGAAAGGACAAGACCGAGTTGCAATACTTGATTACAAAGTTGGAGAAGCATCGGGCCCAAGCTACGCAACCTTTGGTTTAAATGAAGCAAATATACAAACTATAGTCATGGCACGAAATATTCTTCTTCTTTCTGGGATTGTTGTAAGTGTTACCTATGTGTCTATAATTGAAGCTACAGTATTGTTAACCAATGATATTACTAAGTCCTTCAATCGAAGTAGTTTTCCAGAAGGTTTTATTTTTGGAACTTCATCATCAGCTTACCAGGTACTTCAAATATTTCAATATTCTTTCACTATTATGTTCATATTAGATGTTATATGTCGAATATTTGATGACGATCAAATTCAATCTTCGATGGTTGATTTGCAGTATGAAGGTGCAGCAAATGTTGGTGGAAGAGGACCAAGTATATGGGATACTTTCACACATAATTTTCCAGGTCTTTTTCCTTTATCCATTGTAAAATTAATAATAATTCTTCATTACACTATGTTGTTTGACACAGAAAAGATAAAAGACAGAAGCAATGGAGACGTAGCCATCGATGAATACCATCGCTATAAGGAAGATGTTGAGATTATGAAAGACATCAACATGGATGCTTATAGATTTTCTATCTCTTGGTCTAGAATACTTCCAAAAGGAAAGCTTGATGGAGGTGTAAACAAGGAAGGAATCAATTATTACAACAACCTCATCAATGAGCTACTTGCCAAAGGTCTTCAACCCTTTGTGACCCTTTTCCATTGGGACCTTCCACAGACACTTGAAGATGAATATGGTGGCTTTTTAAGTCCAAATATAGTGAATGATTTTCGAGACTATGTAGAGCTTTGCTTTAAAGAATTTGGAGACAGGGTAAAGCATTGGATCACATTGAATGAACCATGGACCTTTGCTAAACATGGTTATGTTGAAGGGGTTCTAGCACCCGGACGATGTTCACCCTGGCAAAACCTAAATTGCACTGGAGGAGATTCCGCCACTGAACCCTATATAGTGGCTCACAATCAATTACTTGCTCATGCATCAGCTGTCAACGTCTACAAAACTAAGTATCAGGAATCTCAGAAGGGCAAGATTGGGATAACACTAGTTTCTCATTGGATAATGCCACTCTATGATACTGAATTGGATCATCATGCCGCACAAAGAGCCATTGATTTCATGTTTGGCTGGTTTATGGATCCATTGACAATAGGAGATTATCCAAGCTCCATGCGGTCCTTGGTAGGAAGTCGATTGCCAAAGTTCTCAAAGTATCAAGCAAAGCTTCTAAAAGGATCCTTTGATTTTATTGGATTAAACTATTACACTTCCTATTATGCAACTAATGCACCTGAATTAAGTAAAGTCAAGCCCAGCTACAACACAGATCCACTTGTAATTCTTTCACAGGAGCGCAATGGAATACCTATTGGTCCAACGGCTGCTTCATTTTGGATGTCAATTTATCCAAAGGGAATTCGTGAACTATTGCTCTATATTAAAACAAAGTACAACAACCCTTTGATTTACATCACTGAAAATGGCATGGATGAGCTTGATGATCCAACACTGCCTCTAGAGAAAGCCCTAGAAGATACAATGAGGGTTGATTACTACTATGATCATCTCTACTATCTTCAAACTGCAATTGAGGATGGTGCTAATGTGAAAGGATATTTTGCATGGTCATTGATTGACAACTTCGAATGGGCTAATGGCTACACCATGAGGTTTGGAATATACTTTGTAGATTACAATAATGGCATCAAAAGATATCCGAAAATGTCTGGGATTTGGTTTAAGAATTTTCTACAACGCAAAGTAGTTACATATAGTGATTCACGTTAA

Protein sequence

>MsG0680034969.01.T01

MWRRMALSRNREKTKPPSSVGVGSGEGKPTNDVKFKVKIPFQVEAHIVHNQAKLVPTGTFEEKPKPVPTGVRVIQMAQGAKKGQDRVAILDYKVGEASGPSYATFGLNEANIQTIVMARNILLLSGIVVSVTYVSIIEATVLLTNDITKSFNRSSFPEGFIFGTSSSAYQVLQIFQYSFTIMFILDVICRIFDDDQIQSSMVDLQYEGAANVGGRGPSIWDTFTHNFPGLFPLSIVKLIIILHYTMLFDTEKIKDRSNGDVAIDEYHRYKEDVEIMKDINMDAYRFSISWSRILPKGKLDGGVNKEGINYYNNLINELLAKGLQPFVTLFHWDLPQTLEDEYGGFLSPNIVNDFRDYVELCFKEFGDRVKHWITLNEPWTFAKHGYVEGVLAPGRCSPWQNLNCTGGDSATEPYIVAHNQLLAHASAVNVYKTKYQESQKGKIGITLVSHWIMPLYDTELDHHAAQRAIDFMFGWFMDPLTIGDYPSSMRSLVGSRLPKFSKYQAKLLKGSFDFIGLNYYTSYYATNAPELSKVKPSYNTDPLVILSQERNGIPIGPTAASFWMSIYPKGIRELLLYIKTKYNNPLIYITENGMDELDDPTLPLEKALEDTMRVDYYYDHLYYLQTAIEDGANVKGYFAWSLIDNFEWANGYTMRFGIYFVDYNNGIKRYPKMSGIWFKNFLQRKVVTYSDSR*