Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043692.01.T01 | KEH19118.1 | 98.561 | 139 | 2 | 0 | 1 | 139 | 84 | 222 | 4.91E-94 | 286 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043692.01.T01 | G7LG31 | 98.561 | 139 | 2 | 0 | 1 | 139 | 84 | 222 | 6.66E-97 | 286 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043692.01.T01 | A0A072TQJ1 | 98.561 | 139 | 2 | 0 | 1 | 139 | 84 | 222 | 2.34e-94 | 286 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048058.01 | MsG0880043692.01 | 0.805984 | 1.025186e-49 | 5.500621e-47 |
| MsG0180000001.01 | MsG0880043692.01 | 0.810131 | 1.342638e-50 | 8.028193e-48 |
| MsG0180000585.01 | MsG0880043692.01 | 0.800728 | 1.257651e-48 | 5.899156e-46 |
| MsG0180001173.01 | MsG0880043692.01 | 0.804349 | 2.254146e-49 | 1.159593e-46 |
| MsG0180001294.01 | MsG0880043692.01 | 0.813571 | 2.392432e-51 | 1.568014e-48 |
| MsG0180001566.01 | MsG0880043692.01 | 0.805068 | 1.595403e-49 | 8.360863e-47 |
| MsG0180003303.01 | MsG0880043692.01 | 0.811499 | 6.789441e-51 | 4.209692e-48 |
| MsG0180003337.01 | MsG0880043692.01 | 0.802381 | 5.763375e-49 | 2.819284e-46 |
| MsG0180003444.01 | MsG0880043692.01 | 0.815135 | 1.079263e-51 | 7.379019e-49 |
| MsG0180004598.01 | MsG0880043692.01 | 0.827090 | 1.895402e-54 | 1.811315e-51 |
| MsG0180004989.01 | MsG0880043692.01 | 0.804531 | 2.066100e-49 | 1.067789e-46 |
| MsG0180004991.01 | MsG0880043692.01 | 0.804637 | 1.963060e-49 | 1.017358e-46 |
| MsG0180005443.01 | MsG0880043692.01 | 0.800484 | 1.410645e-48 | 6.575923e-46 |
| MsG0180005451.01 | MsG0880043692.01 | 0.808265 | 3.371790e-50 | 1.919268e-47 |
| MsG0180006023.01 | MsG0880043692.01 | 0.805300 | 1.427099e-49 | 7.523277e-47 |
| MsG0180006235.01 | MsG0880043692.01 | 0.820106 | 8.173532e-53 | 6.409039e-50 |
| MsG0780040411.01 | MsG0880043692.01 | 0.809578 | 1.766054e-50 | 1.040800e-47 |
| MsG0780040488.01 | MsG0880043692.01 | 0.806607 | 7.579070e-50 | 4.131375e-47 |
| MsG0780040845.01 | MsG0880043692.01 | 0.804730 | 1.877573e-49 | 9.754638e-47 |
| MsG0780041423.01 | MsG0880043692.01 | 0.816600 | 5.086686e-52 | 3.620309e-49 |
| MsG0780041469.01 | MsG0880043692.01 | 0.825487 | 4.564128e-54 | 4.165830e-51 |
| MsG0880042547.01 | MsG0880043692.01 | 0.808399 | 3.156743e-50 | 1.803185e-47 |
| MsG0880042552.01 | MsG0880043692.01 | 0.824216 | 9.103114e-54 | 8.012185e-51 |
| MsG0880043692.01 | MsG0880044075.01 | 0.809528 | 1.809738e-50 | 1.065105e-47 |
| MsG0880043692.01 | MsG0880044917.01 | 0.819801 | 9.594742e-53 | 7.459120e-50 |
| MsG0880043692.01 | MsG0880046113.01 | 0.811696 | 6.153046e-51 | 3.834570e-48 |
| MsG0880043692.01 | MsG0880046762.01 | 0.816413 | 5.602061e-52 | 3.966728e-49 |
| MsG0280010614.01 | MsG0880043692.01 | 0.806750 | 7.069805e-50 | 3.868002e-47 |
| MsG0280010735.01 | MsG0880043692.01 | 0.828017 | 1.135584e-54 | 1.115057e-51 |
| MsG0280011085.01 | MsG0880043692.01 | 0.810515 | 1.109369e-50 | 6.700702e-48 |
| MsG0280011336.01 | MsG0880043692.01 | 0.819878 | 9.217300e-53 | 7.180731e-50 |
| MsG0480018462.01 | MsG0880043692.01 | 0.818341 | 2.062286e-52 | 1.539641e-49 |
| MsG0480019170.01 | MsG0880043692.01 | 0.814996 | 1.159265e-51 | 7.896653e-49 |
| MsG0480020242.01 | MsG0880043692.01 | 0.819401 | 1.183924e-52 | 9.101053e-50 |
| MsG0480020331.01 | MsG0880043692.01 | 0.805263 | 1.452480e-49 | 7.649576e-47 |
| MsG0480020917.01 | MsG0880043692.01 | 0.824416 | 8.167311e-54 | 7.229159e-51 |
| MsG0480021772.01 | MsG0880043692.01 | 0.814890 | 1.223283e-51 | 8.308550e-49 |
| MsG0480021778.01 | MsG0880043692.01 | 0.801105 | 1.053372e-48 | 4.988723e-46 |
| MsG0480022318.01 | MsG0880043692.01 | 0.800641 | 1.310477e-48 | 6.133443e-46 |
| MsG0480022464.01 | MsG0880043692.01 | 0.807838 | 4.156749e-50 | 2.339453e-47 |
| MsG0480022717.01 | MsG0880043692.01 | 0.820239 | 7.617435e-53 | 5.994085e-50 |
| MsG0480022719.01 | MsG0880043692.01 | 0.811599 | 6.459433e-51 | 4.015222e-48 |
| MsG0580024618.01 | MsG0880043692.01 | 0.830668 | 2.580238e-55 | 2.736924e-52 |
| MsG0580024721.01 | MsG0880043692.01 | 0.801683 | 8.020798e-49 | 3.854079e-46 |
| MsG0380015713.01 | MsG0880043692.01 | 0.804171 | 2.455373e-49 | 1.257333e-46 |
| MsG0380016882.01 | MsG0880043692.01 | 0.811056 | 8.474183e-51 | 5.193153e-48 |
| MsG0380017195.01 | MsG0880043692.01 | 0.811847 | 5.705757e-51 | 3.570171e-48 |
| MsG0380017431.01 | MsG0880043692.01 | 0.805778 | 1.132645e-49 | 6.045123e-47 |
| MsG0380017719.01 | MsG0880043692.01 | 0.810939 | 8.983248e-51 | 5.488322e-48 |
| MsG0480018256.01 | MsG0880043692.01 | 0.814636 | 1.392959e-51 | 9.396809e-49 |
| MsG0580029148.01 | MsG0880043692.01 | 0.805099 | 1.571653e-49 | 8.242908e-47 |
| MsG0580029371.01 | MsG0880043692.01 | 0.827585 | 1.442074e-54 | 1.398022e-51 |
| MsG0680030684.01 | MsG0880043692.01 | 0.815122 | 1.086591e-51 | 7.426626e-49 |
| MsG0280006728.01 | MsG0880043692.01 | 0.801888 | 7.279868e-49 | 3.516605e-46 |
| MsG0280007048.01 | MsG0880043692.01 | 0.801091 | 1.060270e-48 | 5.019701e-46 |
| MsG0280007564.01 | MsG0880043692.01 | 0.802095 | 6.600270e-49 | 3.205000e-46 |
| MsG0280007609.01 | MsG0880043692.01 | 0.801501 | 8.738442e-49 | 4.179941e-46 |
| MsG0280007790.01 | MsG0880043692.01 | 0.842670 | 2.244677e-58 | 3.427834e-55 |
| MsG0280007876.01 | MsG0880043692.01 | 0.808877 | 2.495387e-50 | 1.443257e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043692.01.T01 | MTR_8g039290 | 98.561 | 139 | 2 | 0 | 1 | 139 | 84 | 222 | 5.94e-98 | 286 |
| MsG0880043692.01.T01 | MTR_8g039290 | 98.561 | 139 | 2 | 0 | 1 | 139 | 84 | 222 | 6.48e-98 | 286 |
| MsG0880043692.01.T01 | MTR_5g089520 | 79.137 | 139 | 29 | 0 | 1 | 139 | 72 | 210 | 1.41e-79 | 239 |
| MsG0880043692.01.T01 | MTR_1g012920 | 69.595 | 148 | 42 | 2 | 1 | 146 | 84 | 230 | 1.98e-70 | 216 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880043692.01.T01 | AT5G13500 | 80.137 | 146 | 28 | 1 | 1 | 146 | 82 | 226 | 1.06e-81 | 245 |
| MsG0880043692.01.T01 | AT5G13500 | 80.137 | 146 | 28 | 1 | 1 | 146 | 82 | 226 | 1.06e-81 | 245 |
| MsG0880043692.01.T01 | AT5G13500 | 80.137 | 146 | 28 | 1 | 1 | 146 | 82 | 226 | 1.06e-81 | 245 |
| MsG0880043692.01.T01 | AT2G25260 | 70.504 | 139 | 41 | 0 | 1 | 139 | 83 | 221 | 3.29e-72 | 221 |
| MsG0880043692.01.T01 | AT5G25265 | 68.919 | 148 | 43 | 2 | 1 | 146 | 89 | 235 | 5.33e-69 | 213 |
Find 36 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAACTTCTATTAATTGAAT+TGG | 0.254602 | 8:+29280201 | MsG0880043692.01.T01:CDS |
| TCTACCTTTCTGATAATTAC+AGG | 0.273833 | 8:-29280169 | None:intergenic |
| TGTACGCCCTCTTCCCAATC+TGG | 0.371070 | 8:+29280018 | MsG0880043692.01.T01:CDS |
| CCTCTTCCCAATCTGGCATT+TGG | 0.385015 | 8:+29280025 | MsG0880043692.01.T01:CDS |
| CTCACCCTGTCTAGACCTTC+CGG | 0.417765 | 8:-29278887 | None:intergenic |
| TGGAAAGGCTGACAACTTGA+TGG | 0.418539 | 8:+29278832 | MsG0880043692.01.T01:CDS |
| TGTCGTCGTTGATCCTCTTC+CGG | 0.440206 | 8:+29278868 | MsG0880043692.01.T01:CDS |
| CTTTGTTCAGTGGCTGGAAA+AGG | 0.444264 | 8:+29279866 | MsG0880043692.01.T01:CDS |
| ATGGGCCTTTGTTCAGTGGC+TGG | 0.460296 | 8:+29279860 | MsG0880043692.01.T01:CDS |
| GGGCGTACAAATACGTGATC+AGG | 0.464327 | 8:-29280004 | None:intergenic |
| ATCGGATCAATATTTGTAAC+CGG | 0.473029 | 8:-29280136 | None:intergenic |
| CTCTTCCGGAAGGTCTAGAC+AGG | 0.482298 | 8:+29278882 | MsG0880043692.01.T01:CDS |
| CCAAATGCCAGATTGGGAAG+AGG | 0.493455 | 8:-29280025 | None:intergenic |
| CTGTCTAGACCTTCCGGAAG+AGG | 0.500411 | 8:-29278881 | None:intergenic |
| GTAACCGGTCCATTCTCCTC+AGG | 0.508925 | 8:-29280121 | None:intergenic |
| AAGTATTATCCTGAGGAGAA+TGG | 0.515266 | 8:+29280112 | MsG0880043692.01.T01:CDS |
| AATCCTCCCATCTCTGATCC+AGG | 0.523340 | 8:-29278791 | None:intergenic |
| GAGTCTACCTGGATCAGAGA+TGG | 0.533196 | 8:+29278784 | MsG0880043692.01.T01:CDS |
| TTCTCCTGTAATTATCAGAA+AGG | 0.533563 | 8:+29280165 | MsG0880043692.01.T01:CDS |
| AGAGGATCAACGACGACAGT+AGG | 0.536647 | 8:-29278863 | None:intergenic |
| AATGCCGTATCATGTATTAC+TGG | 0.539444 | 8:+29278747 | None:intergenic |
| AAGAAGCAAAGGAGTCTACC+TGG | 0.540779 | 8:+29278773 | MsG0880043692.01.T01:CDS |
| GACCATGGGCCTTTGTTCAG+TGG | 0.540787 | 8:+29279856 | MsG0880043692.01.T01:CDS |
| GTTACAAATATTGATCCGAT+TGG | 0.548705 | 8:+29280139 | MsG0880043692.01.T01:CDS |
| GTCGTTGATCCTCTTCCGGA+AGG | 0.555563 | 8:+29278872 | MsG0880043692.01.T01:CDS |
| CAAATGCCAGATTGGGAAGA+GGG | 0.557171 | 8:-29280024 | None:intergenic |
| ATTACAGGAGAATTGCCAAT+CGG | 0.588392 | 8:-29280154 | None:intergenic |
| AGTCTACCTGGATCAGAGAT+GGG | 0.590857 | 8:+29278785 | MsG0880043692.01.T01:CDS |
| ATTACTGGTATAAGAAGCAA+AGG | 0.598311 | 8:+29278762 | MsG0880043692.01.T01:CDS |
| TTATCCTGAGGAGAATGGAC+CGG | 0.623990 | 8:+29280117 | MsG0880043692.01.T01:CDS |
| CGTCGTTCTGAATAGACCAT+GGG | 0.624386 | 8:+29279842 | MsG0880043692.01.T01:CDS |
| AGCCACTGAACAAAGGCCCA+TGG | 0.626962 | 8:-29279858 | None:intergenic |
| ACGTCGTTCTGAATAGACCA+TGG | 0.640320 | 8:+29279841 | MsG0880043692.01.T01:CDS |
| CTACCTGGATCAGAGATGGG+AGG | 0.675794 | 8:+29278788 | MsG0880043692.01.T01:CDS |
| TGTAAGGAAGTATTATCCTG+AGG | 0.689724 | 8:+29280105 | MsG0880043692.01.T01:CDS |
| TCTTCCGGAAGGTCTAGACA+GGG | 0.732437 | 8:+29278883 | MsG0880043692.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATAAAATGTATTTGTTT+AGG | + | Chr8:29279626-29279645 | MsG0880043692.01.T01:intron | 10.0% |
| !!! | AAATACATTTTATAAATGAT+TGG | - | Chr8:29279622-29279641 | None:intergenic | 10.0% |
| !!! | TTTATTTTCAAATGTTAAAA+TGG | - | Chr8:29279307-29279326 | None:intergenic | 10.0% |
| !!! | TTTTAACATTTGAAAATAAA+AGG | + | Chr8:29279307-29279326 | MsG0880043692.01.T01:intron | 10.0% |
| !! | AAGAAAATGAAAAAATTGTA+AGG | + | Chr8:29280089-29280108 | MsG0880043692.01.T01:CDS | 15.0% |
| !! | ATTTAAATTGTATTTACTGA+TGG | - | Chr8:29279788-29279807 | None:intergenic | 15.0% |
| !! | TAAATCAATCTATCAATAAT+AGG | - | Chr8:29279755-29279774 | None:intergenic | 15.0% |
| !!! | AAATATTTTGTGTATCAATT+TGG | + | Chr8:29279592-29279611 | MsG0880043692.01.T01:intron | 15.0% |
| !!! | ACAATTTTTTCATTTTCTTT+AGG | - | Chr8:29280088-29280107 | None:intergenic | 15.0% |
| !! | AGTTTATCAAAATAGCTTAT+GGG | + | Chr8:29279080-29279099 | MsG0880043692.01.T01:intron | 20.0% |
| !! | ATACTATTAATTCAATAAGC+TGG | - | Chr8:29278976-29278995 | None:intergenic | 20.0% |
| !! | ATTTGAAAATAAAAGGAATG+CGG | + | Chr8:29279314-29279333 | MsG0880043692.01.T01:intron | 20.0% |
| !! | GAAACTTCTATTAATTGAAT+TGG | + | Chr8:29280201-29280220 | MsG0880043692.01.T01:CDS | 20.0% |
| !! | TAAAATCCGACAAAATAATT+TGG | + | Chr8:29279367-29279386 | MsG0880043692.01.T01:intron | 20.0% |
| !!! | ACAATACCAAATTATTTTGT+CGG | - | Chr8:29279376-29279395 | None:intergenic | 20.0% |
| !!! | TTGATGCAGATATATTTTAA+TGG | + | Chr8:29279976-29279995 | MsG0880043692.01.T01:intron | 20.0% |
| !!! | TTGTAGTTTGTTGTTATAAT+TGG | + | Chr8:29278995-29279014 | MsG0880043692.01.T01:intron | 20.0% |
| ! | AACTAAAACATAGATCACTT+AGG | - | Chr8:29279922-29279941 | None:intergenic | 25.0% |
| ! | AGATAGAAATAGTATAAGCT+CGG | + | Chr8:29279535-29279554 | MsG0880043692.01.T01:intron | 25.0% |
| ! | GAGTTTATCAAAATAGCTTA+TGG | + | Chr8:29279079-29279098 | MsG0880043692.01.T01:intron | 25.0% |
| ! | GGTATTGTTGAAATAATTCA+AGG | + | Chr8:29279388-29279407 | MsG0880043692.01.T01:intron | 25.0% |
| ! | TATTGCAAAGTTTAGTGTTA+AGG | + | Chr8:29279558-29279577 | MsG0880043692.01.T01:intron | 25.0% |
| ! | TTAGGCTTAATGTAGAAAAA+TGG | - | Chr8:29280070-29280089 | None:intergenic | 25.0% |
| !! | AAAAGTATAACTGAAAGTCA+TGG | - | Chr8:29278921-29278940 | None:intergenic | 25.0% |
| !! | ATAAGCACTTTTATGATAAG+TGG | + | Chr8:29279210-29279229 | MsG0880043692.01.T01:intron | 25.0% |
| !! | ATGTTAAAATGGACTTTAAC+TGG | - | Chr8:29279296-29279315 | None:intergenic | 25.0% |
| !! | TTCACTAGAATTTTACATTC+TGG | + | Chr8:29278812-29278831 | MsG0880043692.01.T01:CDS | 25.0% |
| !! | TTGTTATAATTGGTCTGTTT+GGG | + | Chr8:29279005-29279024 | MsG0880043692.01.T01:intron | 25.0% |
| !!! | TAGAATTTTACATTCTGGAA+AGG | + | Chr8:29278817-29278836 | MsG0880043692.01.T01:CDS | 25.0% |
| AGTCGTGTGCTTAAATTTAA+AGG | + | Chr8:29279466-29279485 | MsG0880043692.01.T01:intron | 30.0% | |
| ATAATAGGAGAGTCTAAACA+TGG | - | Chr8:29279740-29279759 | None:intergenic | 30.0% | |
| ATCGGATCAATATTTGTAAC+CGG | - | Chr8:29280139-29280158 | None:intergenic | 30.0% | |
| ATGATATCAGATTGAGGAAA+GGG | + | Chr8:29279411-29279430 | MsG0880043692.01.T01:intron | 30.0% | |
| ATTACTGGTATAAGAAGCAA+AGG | + | Chr8:29278762-29278781 | MsG0880043692.01.T01:CDS | 30.0% | |
| GTTACAAATATTGATCCGAT+TGG | + | Chr8:29280139-29280158 | MsG0880043692.01.T01:CDS | 30.0% | |
| TCTACCTTTCTGATAATTAC+AGG | - | Chr8:29280172-29280191 | None:intergenic | 30.0% | |
| TTATCCGGAAAATCTATTGT+AGG | + | Chr8:29279687-29279706 | MsG0880043692.01.T01:intron | 30.0% | |
| TTCTATCTTCGACAAACAAA+AGG | - | Chr8:29279523-29279542 | None:intergenic | 30.0% | |
| TTCTCCTGTAATTATCAGAA+AGG | + | Chr8:29280165-29280184 | MsG0880043692.01.T01:CDS | 30.0% | |
| TTTAGGAAGTTACTGTGATA+AGG | + | Chr8:29279643-29279662 | MsG0880043692.01.T01:intron | 30.0% | |
| ! | GTTGTTATAATTGGTCTGTT+TGG | + | Chr8:29279004-29279023 | MsG0880043692.01.T01:intron | 30.0% |
| ! | GTTTCCTACAATAGATTTTC+CGG | - | Chr8:29279694-29279713 | None:intergenic | 30.0% |
| AAGTATTATCCTGAGGAGAA+TGG | + | Chr8:29280112-29280131 | MsG0880043692.01.T01:CDS | 35.0% | |
| ACACATTGCTTAATCTTTGC+AGG | + | Chr8:29279815-29279834 | MsG0880043692.01.T01:intron | 35.0% | |
| AGTTTAGTGTTAAGGTTTGC+AGG | + | Chr8:29279566-29279585 | MsG0880043692.01.T01:intron | 35.0% | |
| ATTACAGGAGAATTGCCAAT+CGG | - | Chr8:29280157-29280176 | None:intergenic | 35.0% | |
| CACATTGCTTAATCTTTGCA+GGG | + | Chr8:29279816-29279835 | MsG0880043692.01.T01:intron | 35.0% | |
| GATGATATCAGATTGAGGAA+AGG | + | Chr8:29279410-29279429 | MsG0880043692.01.T01:intron | 35.0% | |
| TAACTGAAAGTCATGGTAAG+CGG | - | Chr8:29278914-29278933 | None:intergenic | 35.0% | |
| TAGAAAAATGGAAAAGCAGC+TGG | - | Chr8:29280058-29280077 | None:intergenic | 35.0% | |
| TCAAGGATGATATCAGATTG+AGG | + | Chr8:29279405-29279424 | MsG0880043692.01.T01:intron | 35.0% | |
| ! | AAAATGGACTTTAACTGGCA+TGG | - | Chr8:29279291-29279310 | None:intergenic | 35.0% |
| ! | ATTTTCTCCAAATGCCAGAT+TGG | - | Chr8:29280035-29280054 | None:intergenic | 35.0% |
| ! | GGATTTTACTTCTTTCACCA+AGG | - | Chr8:29279355-29279374 | None:intergenic | 35.0% |
| ! | TATAATTGGTCTGTTTGGGT+TGG | + | Chr8:29279009-29279028 | MsG0880043692.01.T01:intron | 35.0% |
| ! | TTTTCTCCAAATGCCAGATT+GGG | - | Chr8:29280034-29280053 | None:intergenic | 35.0% |
| !! | TGTAAGGAAGTATTATCCTG+AGG | + | Chr8:29280105-29280124 | MsG0880043692.01.T01:CDS | 35.0% |
| ACTTAGCTGTTTGTCCAAAC+AGG | + | Chr8:29279246-29279265 | MsG0880043692.01.T01:intron | 40.0% | |
| GTCCACAAAGACACATTATC+CGG | + | Chr8:29279672-29279691 | MsG0880043692.01.T01:intron | 40.0% | |
| TTCCGGATAATGTGTCTTTG+TGG | - | Chr8:29279677-29279696 | None:intergenic | 40.0% | |
| TTCTAGACTAGGATCCTGTT+TGG | - | Chr8:29279263-29279282 | None:intergenic | 40.0% | |
| !! | GCATGGAAGTATTCTAGACT+AGG | - | Chr8:29279274-29279293 | None:intergenic | 40.0% |
| AAGAAGCAAAGGAGTCTACC+TGG | + | Chr8:29278773-29278792 | MsG0880043692.01.T01:CDS | 45.0% | |
| AGTCTACCTGGATCAGAGAT+GGG | + | Chr8:29278785-29278804 | MsG0880043692.01.T01:CDS | 45.0% | |
| CAAATGCCAGATTGGGAAGA+GGG | - | Chr8:29280027-29280046 | None:intergenic | 45.0% | |
| CTTTGTTCAGTGGCTGGAAA+AGG | + | Chr8:29279866-29279885 | MsG0880043692.01.T01:CDS | 45.0% | |
| TGGAAAGGCTGACAACTTGA+TGG | + | Chr8:29278832-29278851 | MsG0880043692.01.T01:CDS | 45.0% | |
| TTATCCTGAGGAGAATGGAC+CGG | + | Chr8:29280117-29280136 | MsG0880043692.01.T01:CDS | 45.0% | |
| ! | ACGTCGTTCTGAATAGACCA+TGG | + | Chr8:29279841-29279860 | MsG0880043692.01.T01:CDS | 45.0% |
| ! | CGTCGTTCTGAATAGACCAT+GGG | + | Chr8:29279842-29279861 | MsG0880043692.01.T01:CDS | 45.0% |
| ! | CTTTTCCAGCCACTGAACAA+AGG | - | Chr8:29279868-29279887 | None:intergenic | 45.0% |
| ! | GGTTTTCGACTAGCATACCT+TGG | + | Chr8:29279335-29279354 | MsG0880043692.01.T01:intron | 45.0% |
| AATCCTCCCATCTCTGATCC+AGG | - | Chr8:29278794-29278813 | None:intergenic | 50.0% | |
| AGAGGATCAACGACGACAGT+AGG | - | Chr8:29278866-29278885 | None:intergenic | 50.0% | |
| CCAAATGCCAGATTGGGAAG+AGG | - | Chr8:29280028-29280047 | None:intergenic | 50.0% | |
| CCTCTTCCCAATCTGGCATT+TGG | + | Chr8:29280025-29280044 | MsG0880043692.01.T01:CDS | 50.0% | |
| GAGTCTACCTGGATCAGAGA+TGG | + | Chr8:29278784-29278803 | MsG0880043692.01.T01:CDS | 50.0% | |
| GGGCGTACAAATACGTGATC+AGG | - | Chr8:29280007-29280026 | None:intergenic | 50.0% | |
| TCTTCCGGAAGGTCTAGACA+GGG | + | Chr8:29278883-29278902 | MsG0880043692.01.T01:CDS | 50.0% | |
| TGTCGTCGTTGATCCTCTTC+CGG | + | Chr8:29278868-29278887 | MsG0880043692.01.T01:CDS | 50.0% | |
| AGCCACTGAACAAAGGCCCA+TGG | - | Chr8:29279861-29279880 | None:intergenic | 55.0% | |
| ATGGGCCTTTGTTCAGTGGC+TGG | + | Chr8:29279860-29279879 | MsG0880043692.01.T01:CDS | 55.0% | |
| CTACCTGGATCAGAGATGGG+AGG | + | Chr8:29278788-29278807 | MsG0880043692.01.T01:CDS | 55.0% | |
| CTCACCCTGTCTAGACCTTC+CGG | - | Chr8:29278890-29278909 | None:intergenic | 55.0% | |
| CTCTTCCGGAAGGTCTAGAC+AGG | + | Chr8:29278882-29278901 | MsG0880043692.01.T01:CDS | 55.0% | |
| CTGTCTAGACCTTCCGGAAG+AGG | - | Chr8:29278884-29278903 | None:intergenic | 55.0% | |
| GACCATGGGCCTTTGTTCAG+TGG | + | Chr8:29279856-29279875 | MsG0880043692.01.T01:CDS | 55.0% | |
| GTAACCGGTCCATTCTCCTC+AGG | - | Chr8:29280124-29280143 | None:intergenic | 55.0% | |
| GTCGTTGATCCTCTTCCGGA+AGG | + | Chr8:29278872-29278891 | MsG0880043692.01.T01:CDS | 55.0% | |
| TGTACGCCCTCTTCCCAATC+TGG | + | Chr8:29280018-29280037 | MsG0880043692.01.T01:CDS | 55.0% | |
| CGGAAGGTCTAGACAGGGTG+AGG | + | Chr8:29278888-29278907 | MsG0880043692.01.T01:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 29278758 | 29280228 | 29278758 | ID=MsG0880043692.01;Name=MsG0880043692.01 |
| Chr8 | mRNA | 29278758 | 29280228 | 29278758 | ID=MsG0880043692.01.T01;Parent=MsG0880043692.01;Name=MsG0880043692.01.T01;_AED=0.46;_eAED=0.47;_QI=0|0|0|1|1|0.66|3|0|152 |
| Chr8 | exon | 29278758 | 29278904 | 29278758 | ID=MsG0880043692.01.T01:exon:6799;Parent=MsG0880043692.01.T01 |
| Chr8 | exon | 29279837 | 29279904 | 29279837 | ID=MsG0880043692.01.T01:exon:6800;Parent=MsG0880043692.01.T01 |
| Chr8 | exon | 29279985 | 29280228 | 29279985 | ID=MsG0880043692.01.T01:exon:6801;Parent=MsG0880043692.01.T01 |
| Chr8 | CDS | 29278758 | 29278904 | 29278758 | ID=MsG0880043692.01.T01:cds;Parent=MsG0880043692.01.T01 |
| Chr8 | CDS | 29279837 | 29279904 | 29279837 | ID=MsG0880043692.01.T01:cds;Parent=MsG0880043692.01.T01 |
| Chr8 | CDS | 29279985 | 29280228 | 29279985 | ID=MsG0880043692.01.T01:cds;Parent=MsG0880043692.01.T01 |
| Gene Sequence |
| Protein sequence |
