AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024721.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024721.01.T01 MTR_5g015210 99.557 451 2 0 1 451 1 451 0.0 911
MsG0580024721.01.T01 MTR_1g017770 62.899 407 145 4 51 451 28 434 2.43e-175 498
MsG0580024721.01.T01 MTR_8g092870 30.653 398 248 10 63 434 5 400 2.23e-39 147
MsG0580024721.01.T01 MTR_3g095730 29.383 405 254 8 58 434 1 401 1.02e-35 137
MsG0580024721.01.T01 MTR_4g085720 28.535 389 264 9 55 430 1 388 2.49e-35 135
MsG0580024721.01.T01 MTR_6g071340 28.784 403 236 10 67 430 5 395 9.01e-33 129
MsG0580024721.01.T01 MTR_5g077510 29.676 401 227 11 67 430 35 417 1.09e-32 129
MsG0580024721.01.T01 MTR_5g048050 29.529 403 233 11 67 430 25 415 3.76e-32 127
MsG0580024721.01.T01 MTR_7g106340 27.500 400 263 8 66 438 7 406 2.17e-31 125
MsG0580024721.01.T01 MTR_2g087350 28.645 391 257 9 66 438 5 391 5.84e-30 120
MsG0580024721.01.T01 MTR_4g063800 27.049 366 245 7 67 417 255 613 1.06e-28 119
MsG0580024721.01.T01 MTR_3g065080 26.615 387 256 7 67 430 36 417 9.98e-28 115
MsG0580024721.01.T01 MTR_1g094215 27.193 342 218 6 67 388 64 394 3.49e-27 113
MsG0580024721.01.T01 MTR_7g059405 27.177 379 250 11 67 430 264 631 1.55e-26 113
MsG0580024721.01.T01 MTR_1g094215 27.193 342 218 6 67 388 247 577 2.36e-26 112
MsG0580024721.01.T01 MTR_4g485520 27.195 353 228 11 67 399 105 448 9.16e-26 109
MsG0580024721.01.T01 MTR_4g485520 27.195 353 228 11 67 399 273 616 2.03e-25 109
MsG0580024721.01.T01 MTR_7g078330 25.916 382 240 8 67 425 274 635 1.48e-24 107
MsG0580024721.01.T01 MTR_3g096370 27.577 388 252 11 67 430 10 392 3.92e-24 104
MsG0580024721.01.T01 MTR_1g056870 25.899 417 265 9 66 438 6 422 1.13e-23 103
MsG0580024721.01.T01 MTR_1g056910 26.768 396 244 15 66 429 5 386 2.04e-23 102
MsG0580024721.01.T01 MTR_1g056880 25.899 417 265 9 66 438 6 422 3.91e-23 101
MsG0580024721.01.T01 MTR_1g056840 25.481 416 242 10 66 438 6 396 2.08e-22 99.4
MsG0580024721.01.T01 MTR_5g083030 25.281 356 226 6 67 389 293 641 1.37e-21 98.2
MsG0580024721.01.T01 MTR_4g107010 27.273 363 232 12 52 388 264 620 1.55e-20 95.1
MsG0580024721.01.T01 MTR_4g051515 22.803 421 272 12 66 448 5 410 3.00e-20 92.8
MsG0580024721.01.T01 MTR_7g116600 26.590 346 213 10 68 388 79 408 1.25e-19 91.3
MsG0580024721.01.T01 MTR_2g018010 26.241 282 185 5 67 327 292 571 2.87e-19 91.3
MsG0580024721.01.T01 MTR_7g053260 25.882 340 222 11 68 388 79 407 1.55e-18 88.2
MsG0580024721.01.T01 MTR_3g078160 26.316 342 226 8 68 388 276 612 6.02e-18 87.0
MsG0580024721.01.T01 MTR_3g078160 26.316 342 226 8 68 388 276 612 6.11e-18 87.0
MsG0580024721.01.T01 MTR_5g034440 27.893 337 211 10 38 351 255 582 7.85e-18 86.7
MsG0580024721.01.T01 MTR_2g011140 25.455 275 188 5 73 337 21 288 1.61e-16 81.3
MsG0580024721.01.T01 MTR_1g079450 27.138 269 176 8 67 320 63 326 2.00e-16 81.6
MsG0580024721.01.T01 MTR_3g085610 50.000 72 36 0 68 139 281 352 8.66e-16 80.5
MsG0580024721.01.T01 MTR_4g028960 25.292 257 158 7 60 287 274 525 3.27e-15 78.6
MsG0580024721.01.T01 MTR_3g078160 26.809 235 156 5 68 286 276 510 3.07e-14 75.1
MsG0580024721.01.T01 MTR_1g069845 48.485 66 34 0 68 133 125 190 3.31e-14 75.1
MsG0580024721.01.T01 MTR_1g069845 48.485 66 34 0 68 133 246 311 5.30e-14 74.7
MsG0580024721.01.T01 MTR_1g069845 48.485 66 34 0 68 133 242 307 5.37e-14 74.7
MsG0580024721.01.T01 MTR_3g466220 44.578 83 46 0 51 133 217 299 5.95e-14 74.7
MsG0580024721.01.T01 MTR_3g466220 44.578 83 46 0 51 133 196 278 6.31e-14 74.7
MsG0580024721.01.T01 MTR_4g091880 27.190 331 196 10 66 388 4 297 1.09e-13 72.4
MsG0580024721.01.T01 MTR_4g091880 32.847 137 79 4 66 197 4 132 2.73e-13 71.6
MsG0580024721.01.T01 MTR_8g077205 46.970 66 35 0 68 133 276 341 4.91e-13 71.6
MsG0580024721.01.T01 MTR_8g077205 46.970 66 35 0 68 133 164 229 5.33e-13 71.6
MsG0580024721.01.T01 MTR_1g093965 41.892 74 43 0 80 153 1 74 1.29e-12 67.0
MsG0580024721.01.T01 MTR_1g093995 41.892 74 43 0 80 153 1 74 1.56e-12 66.6
MsG0580024721.01.T01 MTR_8g080280 45.714 70 38 0 68 137 283 352 2.81e-12 69.3
MsG0580024721.01.T01 MTR_8g103227 47.761 67 34 1 68 133 396 462 3.01e-12 69.7
MsG0580024721.01.T01 MTR_3g115670 29.921 127 81 2 45 163 8 134 3.60e-12 68.9
MsG0580024721.01.T01 MTR_1g090320 41.237 97 54 2 68 162 514 609 3.97e-12 69.3
MsG0580024721.01.T01 MTR_1g090320 41.237 97 54 2 68 162 516 611 4.08e-12 69.3
MsG0580024721.01.T01 MTR_7g097020 44.776 67 37 0 67 133 241 307 6.94e-12 68.2
MsG0580024721.01.T01 MTR_7g005940 35.398 113 54 3 67 161 595 706 2.48e-11 66.6
MsG0580024721.01.T01 MTR_7g005940 35.398 113 54 3 67 161 595 706 2.90e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024721.01.T01 AT3G49810 74.058 451 114 1 1 451 1 448 0.0 668
MsG0580024721.01.T01 AT5G65920 71.397 451 122 1 1 451 1 444 0.0 649
MsG0580024721.01.T01 AT5G65920 71.397 451 122 1 1 451 1 444 0.0 649
MsG0580024721.01.T01 AT3G19380 30.366 382 241 11 57 416 3 381 1.38e-40 150
MsG0580024721.01.T01 AT1G49780 29.730 407 260 9 66 449 13 416 2.02e-37 142
MsG0580024721.01.T01 AT2G35930 26.617 402 268 9 63 443 8 403 7.23e-35 134
MsG0580024721.01.T01 AT5G64660 29.877 405 244 15 63 434 5 402 1.85e-33 130
MsG0580024721.01.T01 AT3G18710 28.244 393 255 10 67 436 12 400 1.41e-32 128
MsG0580024721.01.T01 AT3G54850 27.344 384 247 10 67 430 248 619 9.41e-31 125
MsG0580024721.01.T01 AT5G09800 26.794 418 259 13 60 447 4 404 5.75e-30 120
MsG0580024721.01.T01 AT1G23030 27.746 346 226 9 67 398 241 576 4.59e-29 120
MsG0580024721.01.T01 AT1G66160 26.753 385 260 8 60 430 27 403 1.95e-27 114
MsG0580024721.01.T01 AT3G52450 25.837 418 261 10 58 430 1 414 5.69e-26 110
MsG0580024721.01.T01 AT1G71020 25.714 350 237 7 67 398 95 439 2.20e-25 108
MsG0580024721.01.T01 AT3G46510 25.195 385 257 7 67 432 256 628 2.35e-25 109
MsG0580024721.01.T01 AT1G71020 25.714 350 237 7 67 398 243 587 3.86e-25 108
MsG0580024721.01.T01 AT5G42340 29.339 242 147 5 67 302 290 513 5.35e-25 108
MsG0580024721.01.T01 AT2G28830 25.588 340 229 6 68 388 185 519 1.80e-23 103
MsG0580024721.01.T01 AT5G37490 23.684 380 274 5 67 430 31 410 4.13e-20 92.8
MsG0580024721.01.T01 AT1G66160 24.675 385 252 9 60 430 27 387 1.10e-18 88.2
MsG0580024721.01.T01 AT1G29340 30.978 184 108 3 67 232 305 487 4.42e-18 87.4
MsG0580024721.01.T01 AT3G07360 29.004 231 138 8 55 261 57 285 1.67e-16 82.0
MsG0580024721.01.T01 AT5G01830 27.143 280 184 6 22 286 230 504 1.79e-16 82.4
MsG0580024721.01.T01 AT3G11840 53.247 77 34 2 58 133 1 76 8.54e-16 79.7
MsG0580024721.01.T01 AT4G21350 25.826 333 227 8 66 388 4 326 1.77e-15 78.2
MsG0580024721.01.T01 AT1G67530 51.429 70 34 0 68 137 273 342 9.95e-15 77.0
MsG0580024721.01.T01 AT1G67530 51.429 70 34 0 68 137 273 342 9.95e-15 77.0
MsG0580024721.01.T01 AT1G67530 51.429 70 34 0 68 137 273 342 9.95e-15 77.0
MsG0580024721.01.T01 AT1G67530 51.429 70 34 0 68 137 273 342 1.05e-14 76.6
MsG0580024721.01.T01 AT1G10560 25.000 312 199 8 71 355 292 595 1.37e-14 76.6
MsG0580024721.01.T01 AT1G24330 50.000 70 35 0 68 137 276 345 4.43e-14 75.1
MsG0580024721.01.T01 AT1G24330 50.000 70 35 0 68 137 276 345 4.43e-14 75.1
MsG0580024721.01.T01 AT1G60190 24.348 345 223 11 73 388 284 619 4.81e-14 74.7
MsG0580024721.01.T01 AT1G27910 50.000 70 35 0 68 137 280 349 7.12e-14 74.3
MsG0580024721.01.T01 AT5G67340 46.269 67 36 0 67 133 240 306 2.47e-12 69.7
MsG0580024721.01.T01 AT5G67340 46.269 67 36 0 67 133 240 306 2.47e-12 69.7
MsG0580024721.01.T01 AT3G54790 41.176 68 40 0 67 134 202 269 4.72e-12 68.6
MsG0580024721.01.T01 AT2G23140 46.032 63 34 0 71 133 237 299 4.86e-12 68.6
MsG0580024721.01.T01 AT2G23140 46.032 63 34 0 71 133 234 296 5.03e-12 68.6
MsG0580024721.01.T01 AT2G23140 46.032 63 34 0 71 133 234 296 5.03e-12 68.6
MsG0580024721.01.T01 AT2G23140 46.032 63 34 0 71 133 45 107 5.12e-12 68.6
MsG0580024721.01.T01 AT2G23140 46.032 63 34 0 71 133 45 107 5.12e-12 68.6
MsG0580024721.01.T01 AT3G54790 41.176 68 40 0 67 134 238 305 6.07e-12 68.6
MsG0580024721.01.T01 AT3G54790 41.176 68 40 0 67 134 238 305 6.07e-12 68.6
MsG0580024721.01.T01 AT5G65500 43.056 72 41 0 66 137 714 785 4.03e-11 65.9
MsG0580024721.01.T01 AT5G65500 43.056 72 41 0 66 137 722 793 4.09e-11 65.9
MsG0580024721.01.T01 AT5G18330 23.585 318 215 11 13 320 26 325 4.73e-11 65.1

Find 98 sgRNAs with CRISPR-Local

Find 107 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCTCCAGCCATAGTTTAT+TGG 0.212618 5:-8785157 MsG0580024721.01.T01:CDS
GCAGATTGTTGTTTCAATAT+TGG 0.233260 5:+8784718 None:intergenic
GGAATTAGCCCTTTGTGTTT+TGG 0.251271 5:-8784965 MsG0580024721.01.T01:CDS
TGCATTGGTTCAAGAGAAAT+TGG 0.251419 5:+8785750 None:intergenic
CTCCAAACACAACACTTTAT+AGG 0.268814 5:-8785608 MsG0580024721.01.T01:CDS
CCATGTATCAGCCTTCTAAA+AGG 0.281315 5:-8785965 MsG0580024721.01.T01:CDS
TGTCCAGTGCAAAGAGTAAC+AGG 0.310547 5:+8785723 None:intergenic
TACAACTATGCAAGAGCTTT+GGG 0.339571 5:-8785643 MsG0580024721.01.T01:CDS
CCAACAGCATGTGAAGTAAA+AGG 0.340191 5:+8785363 None:intergenic
CAGAACAGTGTGCTTCTATA+AGG 0.348100 5:-8785067 MsG0580024721.01.T01:CDS
ACCTGCAAAGATTTCTTTGA+TGG 0.353869 5:-8785274 MsG0580024721.01.T01:CDS
GAGAATGTTGTTCCTCTCAT+AGG 0.363619 5:+8785698 None:intergenic
TCAATCCAACCAATAAACTA+TGG 0.369818 5:+8785148 None:intergenic
GCTGTTGGTTCTGAAGTTAT+TGG 0.374377 5:-8785348 MsG0580024721.01.T01:CDS
GGGTATGAGGGTGGTGGTGA+TGG 0.376806 5:-8785930 MsG0580024721.01.T01:CDS
TCGTCGATTGCCGTTGATGC+AGG 0.377688 5:-8784784 MsG0580024721.01.T01:CDS
GTTGATTGTGGTGGTATTGT+AGG 0.378694 5:-8785858 MsG0580024721.01.T01:CDS
TTCAAAGCTACCCTGCCTTC+AGG 0.379046 5:+8784925 None:intergenic
AACCTATAAAGTGTTGTGTT+TGG 0.379505 5:+8785606 None:intergenic
ACCATCAAAGAAATCTTTGC+AGG 0.386948 5:+8785273 None:intergenic
AGCTGTGAAAGATGGGGTTT+TGG 0.389850 5:-8785886 MsG0580024721.01.T01:CDS
CAAAGCTCTTGCATAGTTGT+AGG 0.392894 5:+8785645 None:intergenic
AGCTAGAGTTCATGCTTTGA+AGG 0.394200 5:-8785475 MsG0580024721.01.T01:CDS
CAATTAGTTGAATTGTTGTC+TGG 0.396249 5:-8785006 MsG0580024721.01.T01:CDS
TCAGCCTTCTAAAAGGGATA+TGG 0.401063 5:-8785958 MsG0580024721.01.T01:CDS
CTACAACTATGCAAGAGCTT+TGG 0.413732 5:-8785644 MsG0580024721.01.T01:CDS
ATTGTAGGAACTGGTGTTGT+TGG 0.418341 5:-8785843 MsG0580024721.01.T01:CDS
TGAAGGCAGGGTAGCTTTGA+AGG 0.418617 5:-8784923 MsG0580024721.01.T01:CDS
GGATATGGTTGTTGGGTATG+AGG 0.419887 5:-8785943 MsG0580024721.01.T01:CDS
AGTTGAATTGTTGTCTGGTA+TGG 0.429978 5:-8785001 MsG0580024721.01.T01:CDS
CCAGTGTCATTGGATGGTTC+TGG 0.433464 5:+8784630 None:intergenic
TCTAAAAGGGATATGGTTGT+TGG 0.433712 5:-8785951 MsG0580024721.01.T01:CDS
GGAGACACTCAAGAAGGTTA+AGG 0.438920 5:-8785502 MsG0580024721.01.T01:CDS
ATCAAAAGTCTCACCATGAT+AGG 0.446610 5:+8784883 None:intergenic
AGCGGCAAGCCCTGCATCAA+CGG 0.453178 5:+8784774 None:intergenic
TCCAACCAATAAACTATGGC+TGG 0.454386 5:+8785152 None:intergenic
TGGTATGGACCATGATTGTT+TGG 0.458739 5:-8784986 MsG0580024721.01.T01:CDS
TGATGGTCAGATTCTAGATC+TGG 0.470143 5:-8785913 MsG0580024721.01.T01:CDS
CTGGACACAGCTGTGAAAGA+TGG 0.472189 5:-8785894 MsG0580024721.01.T01:CDS
CTAAAAGGGATATGGTTGTT+GGG 0.472206 5:-8785950 MsG0580024721.01.T01:CDS
TGGATTGATGAGGCTTGTTA+AGG 0.477377 5:-8785133 MsG0580024721.01.T01:CDS
CATTCTCAAATGGTTTAACA+TGG 0.477905 5:-8785682 MsG0580024721.01.T01:CDS
AAGTGTTGTGTTTGGAGTGA+TGG 0.479659 5:+8785614 None:intergenic
CGTCGATTGCCGTTGATGCA+GGG 0.480126 5:-8784783 MsG0580024721.01.T01:CDS
TGGACACAGCTGTGAAAGAT+GGG 0.480846 5:-8785893 MsG0580024721.01.T01:CDS
TCCAGCCATAGTTTATTGGT+TGG 0.483049 5:-8785153 MsG0580024721.01.T01:CDS
TTTATAGGTTAATATATACT+TGG 0.486014 5:-8785593 MsG0580024721.01.T01:CDS
AGAGGAACAACATTCTCAAA+TGG 0.486614 5:-8785692 MsG0580024721.01.T01:CDS
CATGTATCAGCCTTCTAAAA+GGG 0.488247 5:-8785964 MsG0580024721.01.T01:CDS
GCACGTAAGTCTGTGATTGA+TGG 0.491037 5:-8785420 MsG0580024721.01.T01:CDS
TTGGGTGGTGTTGATTGTGG+TGG 0.491523 5:-8785867 MsG0580024721.01.T01:CDS
TGTTAACACCATACCTATCA+TGG 0.494074 5:-8784896 MsG0580024721.01.T01:CDS
CATAGCAATGGAATCTGTCC+TGG 0.495678 5:-8785102 MsG0580024721.01.T01:CDS
GGCAATCGACGAACACTCCT+CGG 0.495695 5:+8784795 None:intergenic
AGGAAGAGCTTCTGAGCTTG+TGG 0.496986 5:-8785523 MsG0580024721.01.T01:CDS
ATGGTTGTTGGGTATGAGGG+TGG 0.497015 5:-8785939 MsG0580024721.01.T01:CDS
TGTGGTGGTATTGTAGGAAC+TGG 0.497597 5:-8785852 MsG0580024721.01.T01:CDS
GTTGATTGAAACGTTAATTG+AGG 0.502694 5:-8785202 MsG0580024721.01.T01:CDS
GAGACACTCAAGAAGGTTAA+GGG 0.509193 5:-8785501 MsG0580024721.01.T01:CDS
GATATGGTTGTTGGGTATGA+GGG 0.510561 5:-8785942 MsG0580024721.01.T01:CDS
CTTACACTTGGAAATGAAGA+TGG 0.515200 5:+8784657 None:intergenic
GATGGTTGATATCTTGAATG+AGG 0.519499 5:-8785256 MsG0580024721.01.T01:CDS
CTCCTTCTTGTGATTCAAAG+TGG 0.522084 5:-8784748 MsG0580024721.01.T01:CDS
TATCGTCAATACCTGAAGGC+AGG 0.524187 5:-8784936 MsG0580024721.01.T01:CDS
GACCCTGTTACTCTTTGCAC+TGG 0.524861 5:-8785726 MsG0580024721.01.T01:CDS
GAAGGAGCTTCATCAAGTTG+TGG 0.525660 5:-8785457 MsG0580024721.01.T01:CDS
AAGAGGTCTGAAGATGTTCA+AGG 0.532675 5:-8785543 MsG0580024721.01.T01:CDS
GTTGTTGGGTATGAGGGTGG+TGG 0.533466 5:-8785936 MsG0580024721.01.T01:CDS
TTTAATCCAGTGTCATTGGA+TGG 0.544882 5:+8784624 None:intergenic
GCAATCGACGAACACTCCTC+GGG 0.548555 5:+8784796 None:intergenic
GGGCTAATTCCAAACAATCA+TGG 0.556734 5:+8784977 None:intergenic
AGAGTAACAGGGTCTTGCAT+TGG 0.556765 5:+8785735 None:intergenic
TAACGAATCCAAAACACAAA+GGG 0.557474 5:+8784957 None:intergenic
AAGTCTCACCATGATAGGTA+TGG 0.557498 5:+8784888 None:intergenic
GTTTATTGGTTGGATTGATG+AGG 0.566504 5:-8785143 MsG0580024721.01.T01:CDS
GGTTCTGGTAAGCTTACACT+TGG 0.573632 5:+8784645 None:intergenic
AGTACTTGTTGATGAAGAAG+AGG 0.579589 5:-8785560 MsG0580024721.01.T01:CDS
TGTTTGCAAGCTCGCACCCG+AGG 0.590908 5:-8784812 MsG0580024721.01.T01:CDS
AATCACAAGAAGGAGCTTAG+CGG 0.593465 5:+8784756 None:intergenic
ATGGTTGATATCTTGAATGA+GGG 0.598018 5:-8785255 MsG0580024721.01.T01:CDS
TATAGAAGCACACTGTTCTG+AGG 0.600791 5:+8785070 None:intergenic
ATCGTCAATACCTGAAGGCA+GGG 0.601834 5:-8784935 MsG0580024721.01.T01:CDS
AACCACTTTGAATCACAAGA+AGG 0.602714 5:+8784746 None:intergenic
GTTCTGAGGAGGCTTAATCC+AGG 0.612490 5:+8785084 None:intergenic
ATTCTCAAATGGTTTAACAT+GGG 0.615647 5:-8785681 MsG0580024721.01.T01:CDS
AGAAGCACACTGTTCTGAGG+AGG 0.626107 5:+8785073 None:intergenic
ATTGGACAAATGAAAACACT+TGG 0.634832 5:+8785768 None:intergenic
TCGTTATCGTCAATACCTGA+AGG 0.636371 5:-8784940 MsG0580024721.01.T01:CDS
ACTATGGCTGGAGATAATCT+CGG 0.640439 5:+8785164 None:intergenic
AAGTCTGTGATTGATGGAGG+TGG 0.645793 5:-8785414 MsG0580024721.01.T01:CDS
CGTAAGTCTGTGATTGATGG+AGG 0.663245 5:-8785417 MsG0580024721.01.T01:CDS
GCTTGTGGAGACACTCAAGA+AGG 0.663911 5:-8785508 MsG0580024721.01.T01:CDS
AAGGATAAGAGACATAGCAA+TGG 0.668679 5:-8785114 MsG0580024721.01.T01:CDS
GCACTGGACAAACCTATGAG+AGG 0.669601 5:-8785710 MsG0580024721.01.T01:CDS
ATAACGAATCCAAAACACAA+AGG 0.671691 5:+8784956 None:intergenic
GGACACAGCTGTGAAAGATG+GGG 0.688951 5:-8785892 MsG0580024721.01.T01:CDS
AGACTAAAATCAGTTGCACG+CGG 0.721441 5:-8785224 MsG0580024721.01.T01:CDS
GTCCAGTGCAAAGAGTAACA+GGG 0.727176 5:+8785724 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATAGGTTAATATATACT+TGG - Chr5:8785012-8785031 MsG0580024721.01.T01:CDS 15.0%
! ATTCTCAAATGGTTTAACAT+GGG - Chr5:8784924-8784943 MsG0580024721.01.T01:CDS 25.0%
!! AAGATTTTGTTAGTTAGCAT+TGG - Chr5:8785566-8785585 MsG0580024721.01.T01:CDS 25.0%
ATAACGAATCCAAAACACAA+AGG + Chr5:8785652-8785671 None:intergenic 30.0%
ATTGGACAAATGAAAACACT+TGG + Chr5:8784840-8784859 None:intergenic 30.0%
CAATTAGTTGAATTGTTGTC+TGG - Chr5:8785599-8785618 MsG0580024721.01.T01:CDS 30.0%
CATTCTCAAATGGTTTAACA+TGG - Chr5:8784923-8784942 MsG0580024721.01.T01:CDS 30.0%
GTTGATTGAAACGTTAATTG+AGG - Chr5:8785403-8785422 MsG0580024721.01.T01:CDS 30.0%
TAACGAATCCAAAACACAAA+GGG + Chr5:8785651-8785670 None:intergenic 30.0%
TCAATCCAACCAATAAACTA+TGG + Chr5:8785460-8785479 None:intergenic 30.0%
! AGTATGCATTGTCAATTTTG+TGG - Chr5:8785768-8785787 MsG0580024721.01.T01:CDS 30.0%
! ATGGTTGATATCTTGAATGA+GGG - Chr5:8785350-8785369 MsG0580024721.01.T01:CDS 30.0%
! TCTGTTTTGTCTTCTTTACT+TGG - Chr5:8785218-8785237 MsG0580024721.01.T01:CDS 30.0%
!! AACCTATAAAGTGTTGTGTT+TGG + Chr5:8785002-8785021 None:intergenic 30.0%
!! GCAGATTGTTGTTTCAATAT+TGG + Chr5:8785890-8785909 None:intergenic 30.0%
AACCACTTTGAATCACAAGA+AGG + Chr5:8785862-8785881 None:intergenic 35.0%
AAGGATAAGAGACATAGCAA+TGG - Chr5:8785491-8785510 MsG0580024721.01.T01:CDS 35.0%
ACCATCAAAGAAATCTTTGC+AGG + Chr5:8785335-8785354 None:intergenic 35.0%
ACCTGCAAAGATTTCTTTGA+TGG - Chr5:8785331-8785350 MsG0580024721.01.T01:CDS 35.0%
AGAGGAACAACATTCTCAAA+TGG - Chr5:8784913-8784932 MsG0580024721.01.T01:CDS 35.0%
AGTTGAATTGTTGTCTGGTA+TGG - Chr5:8785604-8785623 MsG0580024721.01.T01:CDS 35.0%
ATCAAAAGTCTCACCATGAT+AGG + Chr5:8785725-8785744 None:intergenic 35.0%
CTAAAAGGGATATGGTTGTT+GGG - Chr5:8784655-8784674 MsG0580024721.01.T01:CDS 35.0%
CTCCAAACACAACACTTTAT+AGG - Chr5:8784997-8785016 MsG0580024721.01.T01:CDS 35.0%
CTTACACTTGGAAATGAAGA+TGG + Chr5:8785951-8785970 None:intergenic 35.0%
TACAACTATGCAAGAGCTTT+GGG - Chr5:8784962-8784981 MsG0580024721.01.T01:CDS 35.0%
TATCTCCAGCCATAGTTTAT+TGG - Chr5:8785448-8785467 MsG0580024721.01.T01:CDS 35.0%
TCTAAAAGGGATATGGTTGT+TGG - Chr5:8784654-8784673 MsG0580024721.01.T01:CDS 35.0%
TGTTAACACCATACCTATCA+TGG - Chr5:8785709-8785728 MsG0580024721.01.T01:CDS 35.0%
! ACAACCATATCCCTTTTAGA+AGG + Chr5:8784654-8784673 None:intergenic 35.0%
! AGTACTTGTTGATGAAGAAG+AGG - Chr5:8785045-8785064 MsG0580024721.01.T01:CDS 35.0%
! CATGTATCAGCCTTCTAAAA+GGG - Chr5:8784641-8784660 MsG0580024721.01.T01:CDS 35.0%
! GATGGTTGATATCTTGAATG+AGG - Chr5:8785349-8785368 MsG0580024721.01.T01:CDS 35.0%
! GTTTATTGGTTGGATTGATG+AGG - Chr5:8785462-8785481 MsG0580024721.01.T01:CDS 35.0%
!! CTTTTAGAAGGCTGATACAT+GGG + Chr5:8784642-8784661 None:intergenic 35.0%
!! TGCATTGGTTCAAGAGAAAT+TGG + Chr5:8784858-8784877 None:intergenic 35.0%
AAGAGGTCTGAAGATGTTCA+AGG - Chr5:8785062-8785081 MsG0580024721.01.T01:CDS 40.0%
AAGTCTCACCATGATAGGTA+TGG + Chr5:8785720-8785739 None:intergenic 40.0%
AATCACAAGAAGGAGCTTAG+CGG + Chr5:8785852-8785871 None:intergenic 40.0%
ACTATGGCTGGAGATAATCT+CGG + Chr5:8785444-8785463 None:intergenic 40.0%
AGACTAAAATCAGTTGCACG+CGG - Chr5:8785381-8785400 MsG0580024721.01.T01:CDS 40.0%
AGCTAGAGTTCATGCTTTGA+AGG - Chr5:8785130-8785149 MsG0580024721.01.T01:CDS 40.0%
CAAAGCTCTTGCATAGTTGT+AGG + Chr5:8784963-8784982 None:intergenic 40.0%
CAGAACAGTGTGCTTCTATA+AGG - Chr5:8785538-8785557 MsG0580024721.01.T01:CDS 40.0%
CCAACAGCATGTGAAGTAAA+AGG + Chr5:8785245-8785264 None:intergenic 40.0%
CCATGTATCAGCCTTCTAAA+AGG - Chr5:8784640-8784659 MsG0580024721.01.T01:CDS 40.0%
CTACAACTATGCAAGAGCTT+TGG - Chr5:8784961-8784980 MsG0580024721.01.T01:CDS 40.0%
CTCCTTCTTGTGATTCAAAG+TGG - Chr5:8785857-8785876 MsG0580024721.01.T01:CDS 40.0%
GAGAATGTTGTTCCTCTCAT+AGG + Chr5:8784910-8784929 None:intergenic 40.0%
GAGACACTCAAGAAGGTTAA+GGG - Chr5:8785104-8785123 MsG0580024721.01.T01:CDS 40.0%
GATATGGTTGTTGGGTATGA+GGG - Chr5:8784663-8784682 MsG0580024721.01.T01:CDS 40.0%
GGGCTAATTCCAAACAATCA+TGG + Chr5:8785631-8785650 None:intergenic 40.0%
GTTGATTGTGGTGGTATTGT+AGG - Chr5:8784747-8784766 MsG0580024721.01.T01:CDS 40.0%
TCCAACCAATAAACTATGGC+TGG + Chr5:8785456-8785475 None:intergenic 40.0%
TCCAGCCATAGTTTATTGGT+TGG - Chr5:8785452-8785471 MsG0580024721.01.T01:CDS 40.0%
TCGTTATCGTCAATACCTGA+AGG - Chr5:8785665-8785684 MsG0580024721.01.T01:CDS 40.0%
TGATGGTCAGATTCTAGATC+TGG - Chr5:8784692-8784711 MsG0580024721.01.T01:CDS 40.0%
TGGTATGGACCATGATTGTT+TGG - Chr5:8785619-8785638 MsG0580024721.01.T01:CDS 40.0%
! AAGTGTTGTGTTTGGAGTGA+TGG + Chr5:8784994-8785013 None:intergenic 40.0%
! CCTTTTACTTCACATGCTGT+TGG - Chr5:8785242-8785261 MsG0580024721.01.T01:CDS 40.0%
! GGAATTAGCCCTTTGTGTTT+TGG - Chr5:8785640-8785659 MsG0580024721.01.T01:CDS 40.0%
! TATAGAAGCACACTGTTCTG+AGG + Chr5:8785538-8785557 None:intergenic 40.0%
! TCAGCCTTCTAAAAGGGATA+TGG - Chr5:8784647-8784666 MsG0580024721.01.T01:CDS 40.0%
! TCATGGTGAGACTTTTGATG+AGG - Chr5:8785726-8785745 MsG0580024721.01.T01:CDS 40.0%
!! ATTGTAGGAACTGGTGTTGT+TGG - Chr5:8784762-8784781 MsG0580024721.01.T01:CDS 40.0%
!! CCTTTTAGAAGGCTGATACA+TGG + Chr5:8784643-8784662 None:intergenic 40.0%
!! GCTGTTGGTTCTGAAGTTAT+TGG - Chr5:8785257-8785276 MsG0580024721.01.T01:CDS 40.0%
!! TGGATTGATGAGGCTTGTTA+AGG - Chr5:8785472-8785491 MsG0580024721.01.T01:CDS 40.0%
AAGTCTGTGATTGATGGAGG+TGG - Chr5:8785191-8785210 MsG0580024721.01.T01:CDS 45.0%
AGAGTAACAGGGTCTTGCAT+TGG + Chr5:8784873-8784892 None:intergenic 45.0%
ATCGTCAATACCTGAAGGCA+GGG - Chr5:8785670-8785689 MsG0580024721.01.T01:CDS 45.0%
CATAGCAATGGAATCTGTCC+TGG - Chr5:8785503-8785522 MsG0580024721.01.T01:CDS 45.0%
CGTAAGTCTGTGATTGATGG+AGG - Chr5:8785188-8785207 MsG0580024721.01.T01:CDS 45.0%
GCACGTAAGTCTGTGATTGA+TGG - Chr5:8785185-8785204 MsG0580024721.01.T01:CDS 45.0%
GGAGACACTCAAGAAGGTTA+AGG - Chr5:8785103-8785122 MsG0580024721.01.T01:CDS 45.0%
GGATATGGTTGTTGGGTATG+AGG - Chr5:8784662-8784681 MsG0580024721.01.T01:CDS 45.0%
GTCCAGTGCAAAGAGTAACA+GGG + Chr5:8784884-8784903 None:intergenic 45.0%
TATCGTCAATACCTGAAGGC+AGG - Chr5:8785669-8785688 MsG0580024721.01.T01:CDS 45.0%
TGGACACAGCTGTGAAAGAT+GGG - Chr5:8784712-8784731 MsG0580024721.01.T01:CDS 45.0%
TGTCCAGTGCAAAGAGTAAC+AGG + Chr5:8784885-8784904 None:intergenic 45.0%
TGTGGTGGTATTGTAGGAAC+TGG - Chr5:8784753-8784772 MsG0580024721.01.T01:CDS 45.0%
! AGCTGTGAAAGATGGGGTTT+TGG - Chr5:8784719-8784738 MsG0580024721.01.T01:CDS 45.0%
! GAAGGAGCTTCATCAAGTTG+TGG - Chr5:8785148-8785167 MsG0580024721.01.T01:CDS 45.0%
! GCTGTGAAAGATGGGGTTTT+GGG - Chr5:8784720-8784739 MsG0580024721.01.T01:CDS 45.0%
! GGTTCTGGTAAGCTTACACT+TGG + Chr5:8785963-8785982 None:intergenic 45.0%
!!! GTTTTGGGTGGTGTTGATTG+TGG - Chr5:8784735-8784754 MsG0580024721.01.T01:CDS 45.0%
AGGAAGAGCTTCTGAGCTTG+TGG - Chr5:8785082-8785101 MsG0580024721.01.T01:CDS 50.0%
ATGGTTGTTGGGTATGAGGG+TGG - Chr5:8784666-8784685 MsG0580024721.01.T01:CDS 50.0%
CTGGACACAGCTGTGAAAGA+TGG - Chr5:8784711-8784730 MsG0580024721.01.T01:CDS 50.0%
GACCCTGTTACTCTTTGCAC+TGG - Chr5:8784879-8784898 MsG0580024721.01.T01:CDS 50.0%
GCACTGGACAAACCTATGAG+AGG - Chr5:8784895-8784914 MsG0580024721.01.T01:CDS 50.0%
GCTTGTGGAGACACTCAAGA+AGG - Chr5:8785097-8785116 MsG0580024721.01.T01:CDS 50.0%
GGACACAGCTGTGAAAGATG+GGG - Chr5:8784713-8784732 MsG0580024721.01.T01:CDS 50.0%
TTCAAAGCTACCCTGCCTTC+AGG + Chr5:8785683-8785702 None:intergenic 50.0%
!! AGAAGCACACTGTTCTGAGG+AGG + Chr5:8785535-8785554 None:intergenic 50.0%
!! GTTCTGAGGAGGCTTAATCC+AGG + Chr5:8785524-8785543 None:intergenic 50.0%
!! TGAAGGCAGGGTAGCTTTGA+AGG - Chr5:8785682-8785701 MsG0580024721.01.T01:CDS 50.0%
!! TTGGGTGGTGTTGATTGTGG+TGG - Chr5:8784738-8784757 MsG0580024721.01.T01:CDS 50.0%
!!! GTGAAAGATGGGGTTTTGGG+TGG - Chr5:8784723-8784742 MsG0580024721.01.T01:CDS 50.0%
GCAATCGACGAACACTCCTC+GGG + Chr5:8785812-8785831 None:intergenic 55.0%
GGCAATCGACGAACACTCCT+CGG + Chr5:8785813-8785832 None:intergenic 55.0%
GTTGTTGGGTATGAGGGTGG+TGG - Chr5:8784669-8784688 MsG0580024721.01.T01:CDS 55.0%
! CGTCGATTGCCGTTGATGCA+GGG - Chr5:8785822-8785841 MsG0580024721.01.T01:CDS 55.0%
! TCGTCGATTGCCGTTGATGC+AGG - Chr5:8785821-8785840 MsG0580024721.01.T01:CDS 55.0%
AGCGGCAAGCCCTGCATCAA+CGG + Chr5:8785834-8785853 None:intergenic 60.0%
TGTTTGCAAGCTCGCACCCG+AGG - Chr5:8785793-8785812 MsG0580024721.01.T01:CDS 60.0%
! GGGTATGAGGGTGGTGGTGA+TGG - Chr5:8784675-8784694 MsG0580024721.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr5 gene 8784636 8785991 8784636 ID=MsG0580024721.01;Name=MsG0580024721.01
Chr5 mRNA 8784636 8785991 8784636 ID=MsG0580024721.01.T01;Parent=MsG0580024721.01;Name=MsG0580024721.01.T01;_AED=0.28;_eAED=0.28;_QI=0|-1|0|1|-1|1|1|0|451
Chr5 exon 8784636 8785991 8784636 ID=MsG0580024721.01.T01:exon:26398;Parent=MsG0580024721.01.T01
Chr5 CDS 8784636 8785991 8784636 ID=MsG0580024721.01.T01:cds;Parent=MsG0580024721.01.T01
Gene Sequence

>MsG0580024721.01.T01

ATGCCCATGTATCAGCCTTCTAAAAGGGATATGGTTGTTGGGTATGAGGGTGGTGGTGATGGTCAGATTCTAGATCTGGACACAGCTGTGAAAGATGGGGTTTTGGGTGGTGTTGATTGTGGTGGTATTGTAGGAACTGGTGTTGTTGGTGAGAAATTAGATCTGAGAAAAATGATTCAAGAGCTTGAGTTATGTGAAGTACCAAGTGTTTTCATTTGTCCAATTTCTCTTGAACCAATGCAAGACCCTGTTACTCTTTGCACTGGACAAACCTATGAGAGGAACAACATTCTCAAATGGTTTAACATGGGACACTTTACTTGTCCTACAACTATGCAAGAGCTTTGGGATGATTCCATCACTCCAAACACAACACTTTATAGGTTAATATATACTTGGTTTTCTCAGAAGTACTTGTTGATGAAGAAGAGGTCTGAAGATGTTCAAGGAAGAGCTTCTGAGCTTGTGGAGACACTCAAGAAGGTTAAGGGTCAAGCTAGAGTTCATGCTTTGAAGGAGCTTCATCAAGTTGTGGCTGTTCATGCTACTGCACGTAAGTCTGTGATTGATGGAGGTGGTGTTTCTGTTTTGTCTTCTTTACTTGGTCCTTTTACTTCACATGCTGTTGGTTCTGAAGTTATTGGTATTCTTGTTAGTTTGACACTTGATTCTGAATCTAAAAAGAATCTTATGCAACCTGCAAAGATTTCTTTGATGGTTGATATCTTGAATGAGGGTTCAATTGAGACTAAAATCAGTTGCACGCGGTTGATTGAAACGTTAATTGAGGAGAAAGATTTTCGTTCCGAGATTATCTCCAGCCATAGTTTATTGGTTGGATTGATGAGGCTTGTTAAGGATAAGAGACATAGCAATGGAATCTGTCCTGGATTAAGCCTCCTCAGAACAGTGTGCTTCTATAAGGAAGTTAAGATTTTGTTAGTTAGCATTGGTGCTGTTTCTCAATTAGTTGAATTGTTGTCTGGTATGGACCATGATTGTTTGGAATTAGCCCTTTGTGTTTTGGATTCGTTATCGTCAATACCTGAAGGCAGGGTAGCTTTGAAGGAATGTGTTAACACCATACCTATCATGGTGAGACTTTTGATGAGGATATCAGAAAGCTGTACTCAGTATGCATTGTCAATTTTGTGGTCTGTTTGCAAGCTCGCACCCGAGGAGTGTTCGTCGATTGCCGTTGATGCAGGGCTTGCCGCTAAGCTCCTTCTTGTGATTCAAAGTGGTTGCAATCCAATATTGAAACAACAATCTGCTGAGCTTTTGAAACTATGTAGTTTGAATTATTCAGATACCATCTTCATTTCCAAGTGTAAGCTTACCAGAACCATCCAATGA

Protein sequence

>MsG0580024721.01.T01

MPMYQPSKRDMVVGYEGGGDGQILDLDTAVKDGVLGGVDCGGIVGTGVVGEKLDLRKMIQELELCEVPSVFICPISLEPMQDPVTLCTGQTYERNNILKWFNMGHFTCPTTMQELWDDSITPNTTLYRLIYTWFSQKYLLMKKRSEDVQGRASELVETLKKVKGQARVHALKELHQVVAVHATARKSVIDGGGVSVLSSLLGPFTSHAVGSEVIGILVSLTLDSESKKNLMQPAKISLMVDILNEGSIETKISCTRLIETLIEEKDFRSEIISSHSLLVGLMRLVKDKRHSNGICPGLSLLRTVCFYKEVKILLVSIGAVSQLVELLSGMDHDCLELALCVLDSLSSIPEGRVALKECVNTIPIMVRLLMRISESCTQYALSILWSVCKLAPEECSSIAVDAGLAAKLLLVIQSGCNPILKQQSAELLKLCSLNYSDTIFISKCKLTRTIQ*