AlfalfaGEDB | Msa1269500

M. sativa cultivar zhongmu-4 / Msa1269500

KEGG: K14638
GO: GO:0003674 GO:0005215 GO:0005319 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009605 GO:0009607 GO:0009624 GO:0010119 GO:0010876 GO:0015075 GO:0015318 GO:0015665 GO:0015711 GO:0015718 GO:0015849 GO:0015850 GO:0016020 GO:0022857 GO:0033036 GO:0034220 GO:0043207 GO:0044464 GO:0046864 GO:0046865 GO:0046942 GO:0046943 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0071702 GO:0071944 GO:0080168 GO:0090440 GO:0098656 GO:1901618 GO:1903825 GO:1905039
PFAM: PF00854.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1269500	XP_003602970.1	98.086	209	4	0	1	209	360	568	5.30e-144	423

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1269500	sp\|Q8H157\|PTR19_ARATH	44.776	201	106	1	1	196	384	584	1.76e-61	204

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1269500	G7J5Q5	98.086	209	4	0	1	209	360	568	2.53e-144	423

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004900	Msa1269500	0.802712	4.924848e-49	-8.615850e-47
Msa0004940	Msa1269500	0.822729	2.027061e-53	-8.615850e-47
Msa0004990	Msa1269500	0.810705	1.009118e-50	-8.615850e-47
Msa0006080	Msa1269500	0.817752	2.801971e-52	-8.615850e-47
Msa0007810	Msa1269500	-0.802382	5.760716e-49	-8.615850e-47
Msa0008980	Msa1269500	0.818012	2.447400e-52	-8.615850e-47
Msa0011010	Msa1269500	0.820860	5.488042e-53	-8.615850e-47
Msa0011040	Msa1269500	0.819523	1.110743e-52	-8.615850e-47
Msa0011060	Msa1269500	-0.810184	1.307840e-50	-8.615850e-47
Msa0011100	Msa1269500	-0.809456	1.875263e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1269500	MtrunA17_Chr3g0133341	98.086	209	4	0	1	209	360	568	4.87e-148	423
Msa1269500	MtrunA17_Chr2g0284701	52.885	208	90	2	1	200	390	597	5.50e-74	234
Msa1269500	MtrunA17_Chr1g0193391	52.133	211	84	4	1	200	355	559	2.40e-68	219
Msa1269500	MtrunA17_Chr4g0060071	50.000	196	93	1	2	192	104	299	1.83e-66	206
Msa1269500	MtrunA17_Chr8g0379971	55.000	200	81	2	1	191	392	591	7.34e-66	213
Msa1269500	MtrunA17_Chr4g0069581	52.764	199	81	2	1	192	326	518	1.43e-63	206
Msa1269500	MtrunA17_Chr7g0271221	51.471	204	85	3	1	197	355	551	3.26e-63	206
Msa1269500	MtrunA17_Chr8g0379991	54.787	188	76	2	13	191	377	564	1.02e-62	204
Msa1269500	MtrunA17_Chr8g0362711	46.193	197	100	2	1	191	375	571	6.24e-60	197
Msa1269500	MtrunA17_Chr5g0415961	45.918	196	98	2	1	191	380	572	7.15e-60	196

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1269500	AT1G69850.1	44.776	201	106	1	1	196	384	584	1.79e-62	204
Msa1269500	AT1G27040.3	48.718	195	94	2	1	190	335	528	2.50e-62	202
Msa1269500	AT1G27040.2	48.718	195	94	2	1	190	363	556	5.74e-62	202
Msa1269500	AT1G27040.1	48.718	195	94	2	1	190	367	560	6.38e-62	202
Msa1269500	AT1G68570.2	45.813	203	104	2	1	197	342	544	8.30e-55	183
Msa1269500	AT1G33440.1	40.278	216	114	2	1	208	379	587	9.07e-55	184
Msa1269500	AT1G68570.1	45.813	203	104	2	1	197	372	574	1.54e-54	183
Msa1269500	AT5G62730.2	44.554	202	102	2	1	192	326	527	7.82e-53	177
Msa1269500	AT5G62730.1	44.118	204	104	2	1	194	385	588	1.70e-52	177
Msa1269500	AT1G59740.1	43.005	193	97	2	1	187	388	573	7.34e-50	171

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Find 41 sgRNAs with CRISPR-Local

Find 51 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGATGTTGACATGGTTA+AGG	0.368323	8_3:+2724491	Msa1269500:CDS
ACAATAGAGGGATTACTGGG+AGG	0.708379	8_3:-2723903	None:intergenic
ACAGTGGAAGACAAACACCT+AGG	0.710549	8_3:+2724462	Msa1269500:CDS
AGAATCACAGGAATCCCAAC+CGG	0.532778	8_3:+2723979	Msa1269500:CDS
AGAGGGATTACTGGGAGGGA+GGG	0.552016	8_3:-2723898	None:intergenic
AGGACAAACATGAACAATAG+AGG	0.473937	8_3:-2723916	None:intergenic
ATCCAATTCCAATTCTTTGA+AGG	0.403302	8_3:-2724011	None:intergenic
ATCCGACACCTTCAAAGAAT+TGG	0.340962	8_3:+2724003	Msa1269500:CDS
ATCTACCATATTATGTTCTA+TGG	0.326060	8_3:-2724097	None:intergenic
ATGAACAATAGAGGGATTAC+TGG	0.402130	8_3:-2723907	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCCAATTCCAATTCTTTGA+AGG	-	chr8_3:2724014-2724033	None:intergenic	30.0%
TCAAAGAATTGGAATTGGAT+TGG	+	chr8_3:2724014-2724033	Msa1269500:CDS	30.0%
TGTAGCCATAGAACATAATA+TGG	+	chr8_3:2724092-2724111	Msa1269500:CDS	30.0%
CAAAAAACACTCATTGGTAA+AGG	-	chr8_3:2724132-2724151	None:intergenic	30.0%
TTGGTATAGATACAAAACAG+TGG	+	chr8_3:2724446-2724465	Msa1269500:CDS	30.0%
CAACATCATTTAAATCACCT+AGG	-	chr8_3:2724482-2724501	None:intergenic	30.0%
AAATGATGTTGACATGGTTA+AGG	+	chr8_3:2724491-2724510	Msa1269500:CDS	30.0%
TGAACAATAGAGGGATTACT+GGG	-	chr8_3:2723909-2723928	None:intergenic	35.0%
ATGAACAATAGAGGGATTAC+TGG	-	chr8_3:2723910-2723929	None:intergenic	35.0%
GGACAAACATGAACAATAGA+GGG	-	chr8_3:2723918-2723937	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	2723889	2724518	2723889	ID=Msa1269500;Name=Msa1269500
chr8_3	mRNA	2723889	2724518	2723889	ID=Msa1269500-mRNA-1;Parent=Msa1269500;Name=Msa1269500-mRNA-1;_AED=0.20;_eAED=0.23;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|209
chr8_3	exon	2723889	2724518	2723889	ID=Msa1269500-mRNA-1:exon:883;Parent=Msa1269500-mRNA-1
chr8_3	CDS	2723889	2724518	2723889	ID=Msa1269500-mRNA-1:cds;Parent=Msa1269500-mRNA-1

Gene Sequence

>Msa1269500

ATGCCAGGACCCTCCCTCCCAGTAATCCCTCTATTGTTCATGTTTGTCCTAATTCCTCTATACGACCGAGTTTTTGTCCCGCTTATTCGAAGAATCACAGGAATCCCAACCGGAATCCGACACCTTCAAAGAATTGGAATTGGATTGGTTCTATCAGCTATATCAATGTTAGTTGCTGGTTTTGTCGAAACACGTCGAAAATCTGTAGCCATAGAACATAATATGGTAGATAGCACTGAGCCTTTACCAATGAGTGTTTTTTGGTTGGGTTTTCAATATGCTATTTTTGGAGCTGCAGACATGTTTACACTTATTGGACTTCTAGAGTTTTTCTATGCAGAAAGTTCAGCTGGAATGAAGTCACTTAGTACAGCAATTTCTTGGTGTTCTGTTGCATTTGGTTACTTTACAAGCACAGTGGTTGTTGAGGTAGTTAACAAAGTGAGTGGTGGTTGGTTGGCTAGTAATAACTTGAATAGAGACAAGCTTAACTACTTTTATTGGTTATTGTCAATCATAAGTGTTGTAAACTTTGTATTTTACTTGGTTTGTGCTTCTTGGTATAGATACAAAACAGTGGAAGACAAACACCTAGGTGATTTAAATGATGTTGACATGGTTAAGGTTTAA

Protein sequence

>Msa1269500

MPGPSLPVIPLLFMFVLIPLYDRVFVPLIRRITGIPTGIRHLQRIGIGLVLSAISMLVAGFVETRRKSVAIEHNMVDSTEPLPMSVFWLGFQYAIFGAADMFTLIGLLEFFYAESSAGMKSLSTAISWCSVAFGYFTSTVVVEVVNKVSGGWLASNNLNRDKLNYFYWLLSIISVVNFVFYLVCASWYRYKTVEDKHLGDLNDVDMVKV*