AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1269500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1269500 MtrunA17_Chr3g0133341 98.086 209 4 0 1 209 360 568 4.87e-148 423
Msa1269500 MtrunA17_Chr2g0284701 52.885 208 90 2 1 200 390 597 5.50e-74 234
Msa1269500 MtrunA17_Chr1g0193391 52.133 211 84 4 1 200 355 559 2.40e-68 219
Msa1269500 MtrunA17_Chr4g0060071 50.000 196 93 1 2 192 104 299 1.83e-66 206
Msa1269500 MtrunA17_Chr8g0379971 55.000 200 81 2 1 191 392 591 7.34e-66 213
Msa1269500 MtrunA17_Chr4g0069581 52.764 199 81 2 1 192 326 518 1.43e-63 206
Msa1269500 MtrunA17_Chr7g0271221 51.471 204 85 3 1 197 355 551 3.26e-63 206
Msa1269500 MtrunA17_Chr8g0379991 54.787 188 76 2 13 191 377 564 1.02e-62 204
Msa1269500 MtrunA17_Chr8g0362711 46.193 197 100 2 1 191 375 571 6.24e-60 197
Msa1269500 MtrunA17_Chr5g0415961 45.918 196 98 2 1 191 380 572 7.15e-60 196
Msa1269500 MtrunA17_Chr2g0276751 46.193 197 93 2 1 191 374 563 8.17e-58 191
Msa1269500 MtrunA17_Chr5g0422881 43.128 211 114 2 1 205 368 578 2.60e-56 187
Msa1269500 MtrunA17_Chr7g0255621 40.385 208 120 2 5 208 375 582 1.22e-48 167
Msa1269500 MtrunA17_Chr4g0005901 44.949 198 102 3 1 193 378 573 7.02e-48 165
Msa1269500 MtrunA17_Chr7g0255601 41.361 191 108 2 5 191 382 572 2.96e-46 161
Msa1269500 MtrunA17_Chr5g0399061 42.781 187 99 4 18 200 396 578 1.66e-45 158
Msa1269500 MtrunA17_Chr7g0241741 43.434 198 105 3 1 193 368 563 6.41e-45 157
Msa1269500 MtrunA17_Chr3g0142121 39.524 210 112 5 1 204 83 283 1.21e-44 150
Msa1269500 MtrunA17_Chr7g0255611 38.278 209 121 3 5 205 384 592 1.99e-44 155
Msa1269500 MtrunA17_Chr3g0082631 38.647 207 116 4 1 200 263 465 1.46e-43 151
Msa1269500 MtrunA17_Chr5g0399071 39.706 204 115 4 1 200 377 576 4.11e-43 152
Msa1269500 MtrunA17_Chr3g0142101 37.850 214 118 5 1 208 381 585 6.44e-43 151
Msa1269500 MtrunA17_Chr7g0261661 42.857 196 106 2 1 191 259 453 1.20e-42 149
Msa1269500 MtrunA17_Chr8g0353031 39.899 198 113 3 2 194 357 553 1.38e-42 150
Msa1269500 MtrunA17_Chr3g0142091 38.863 211 115 4 1 205 373 575 3.96e-42 149
Msa1269500 MtrunA17_Chr3g0104011 38.776 196 113 3 1 191 370 563 5.59e-42 149
Msa1269500 MtrunA17_Chr4g0056431 43.137 204 108 4 1 200 380 579 1.69e-41 147
Msa1269500 MtrunA17_Chr7g0214731 38.073 218 122 5 1 209 414 627 2.27e-41 148
Msa1269500 MtrunA17_Chr5g0439381 37.864 206 118 4 1 205 373 569 6.75e-41 146
Msa1269500 MtrunA17_Chr7g0261881 41.081 185 103 2 12 191 384 567 9.64e-41 145
Msa1269500 MtrunA17_Chr8g0375361 37.755 196 116 2 1 191 387 581 1.10e-40 145
Msa1269500 MtrunA17_Chr7g0261811 40.816 196 110 2 1 191 373 567 1.22e-40 145
Msa1269500 MtrunA17_Chr7g0261851 38.119 202 119 2 1 197 374 574 3.81e-40 144
Msa1269500 MtrunA17_Chr4g0014861 38.071 197 115 3 1 191 233 428 7.41e-40 141
Msa1269500 MtrunA17_Chr7g0261791 39.409 203 116 3 2 199 378 578 1.15e-39 143
Msa1269500 MtrunA17_Chr4g0014871 39.086 197 113 3 1 191 358 553 2.29e-39 141
Msa1269500 MtrunA17_Chr4g0059991 34.634 205 121 4 1 195 376 577 5.83e-39 141
Msa1269500 MtrunA17_Chr3g0077151 39.594 197 112 3 1 191 348 543 7.71e-39 140
Msa1269500 MtrunA17_Chr8g0375311 37.755 196 116 2 1 191 388 582 1.67e-38 139
Msa1269500 MtrunA17_Chr7g0261721 37.321 209 123 3 1 202 7 214 1.70e-38 132
Msa1269500 MtrunA17_Chr4g0063591 39.796 196 109 4 1 191 368 559 2.67e-38 139
Msa1269500 MtrunA17_Chr4g0014781 38.579 197 114 3 1 191 356 551 2.79e-38 139
Msa1269500 MtrunA17_Chr3g0112631 37.850 214 121 6 1 208 78 285 2.83e-38 134
Msa1269500 MtrunA17_Chr4g0014791 38.579 197 114 3 1 191 354 549 4.03e-38 138
Msa1269500 MtrunA17_Chr5g0415791 38.710 217 118 5 1 205 385 598 4.92e-38 138
Msa1269500 MtrunA17_Chr3g0114501 39.801 201 115 2 1 196 367 566 5.23e-38 138
Msa1269500 MtrunA17_Chr4g0014841 37.563 197 116 3 1 191 354 549 5.57e-38 137
Msa1269500 MtrunA17_Chr4g0059971 37.313 201 113 4 1 191 387 584 7.66e-38 137
Msa1269500 MtrunA17_Chr4g0014801 38.071 197 115 3 1 191 356 551 7.93e-38 137
Msa1269500 MtrunA17_Chr8g0375291 37.895 190 112 2 1 185 388 576 3.61e-37 135
Msa1269500 MtrunA17_Chr8g0362801 35.071 211 127 4 1 206 269 474 6.78e-37 134
Msa1269500 MtrunA17_Chr7g0261771 38.776 196 114 2 1 191 377 571 9.25e-37 135
Msa1269500 MtrunA17_Chr8g0375341 37.363 182 108 2 18 194 405 585 2.41e-35 130
Msa1269500 MtrunA17_Chr3g0112671 36.715 207 115 4 1 203 376 570 2.65e-35 130
Msa1269500 MtrunA17_Chr3g0112611 37.811 201 119 3 1 196 375 574 5.67e-35 130
Msa1269500 MtrunA17_Chr1g0187241 36.735 196 118 2 1 191 372 566 6.23e-35 129
Msa1269500 MtrunA17_Chr4g0008651 34.951 206 128 2 1 203 379 581 4.79e-34 127
Msa1269500 MtrunA17_Chr7g0240381 34.518 197 117 2 1 194 374 561 8.07e-34 126
Msa1269500 MtrunA17_Chr8g0362781 35.025 197 120 3 5 196 393 586 1.54e-33 125
Msa1269500 MtrunA17_Chr8g0375321 38.333 180 107 2 18 193 402 581 1.97e-33 125
Msa1269500 MtrunA17_Chr1g0213711 31.925 213 133 4 1 207 368 574 2.44e-33 125
Msa1269500 MtrunA17_Chr8g0375351 36.813 182 109 2 18 194 405 585 3.25e-33 125
Msa1269500 MtrunA17_Chr4g0059981 33.010 206 129 4 1 198 384 588 3.85e-33 125
Msa1269500 MtrunA17_Chr1g0166731 37.755 196 116 2 1 191 267 461 1.89e-32 122
Msa1269500 MtrunA17_Chr1g0166711 38.265 196 115 2 1 191 370 564 4.90e-32 121
Msa1269500 MtrunA17_Chr4g0054891 33.493 209 124 5 1 203 462 661 5.81e-32 122
Msa1269500 MtrunA17_Chr6g0451841 33.498 203 124 4 1 195 341 540 8.52e-32 120
Msa1269500 MtrunA17_Chr5g0415841 34.184 196 118 4 8 195 274 466 1.09e-31 119
Msa1269500 MtrunA17_Chr1g0166791 32.653 196 126 2 1 191 370 564 1.24e-31 120
Msa1269500 MtrunA17_Chr7g0218851 32.821 195 118 4 1 189 395 582 2.05e-31 120
Msa1269500 MtrunA17_Chr2g0331521 33.000 200 127 4 1 194 371 569 2.54e-31 119
Msa1269500 MtrunA17_Chr4g0003761 34.419 215 131 5 1 207 377 589 3.82e-31 119
Msa1269500 MtrunA17_Chr5g0400371 32.673 202 128 4 1 196 464 663 5.01e-31 119
Msa1269500 MtrunA17_Chr7g0217461 33.803 213 132 3 1 205 374 585 9.20e-31 118
Msa1269500 MtrunA17_Chr7g0234381 36.979 192 109 3 1 188 235 418 7.78e-30 114
Msa1269500 MtrunA17_Chr1g0147631 37.624 202 118 5 2 197 373 572 1.07e-29 115
Msa1269500 MtrunA17_Chr8g0390331 32.338 201 127 5 1 195 361 558 1.10e-29 115
Msa1269500 MtrunA17_Chr8g0375331 38.068 176 105 2 20 191 391 566 3.06e-29 114
Msa1269500 MtrunA17_Chr7g0214461 31.282 195 121 4 1 189 425 612 3.99e-29 113
Msa1269500 MtrunA17_Chr2g0331481 32.836 201 127 4 1 195 374 572 2.03e-28 111
Msa1269500 MtrunA17_Chr2g0331471 33.702 181 112 4 21 195 457 635 2.31e-28 111
Msa1269500 MtrunA17_Chr7g0234151 34.896 192 113 2 1 188 235 418 4.12e-28 109
Msa1269500 MtrunA17_Chr4g0011471 34.783 184 103 5 11 189 386 557 8.32e-28 109
Msa1269500 MtrunA17_Chr7g0234181 34.375 192 114 2 1 188 230 413 1.81e-27 107
Msa1269500 MtrunA17_Chr2g0331461 33.702 181 112 4 21 195 394 572 2.26e-27 108
Msa1269500 MtrunA17_Chr2g0331511 32.381 210 133 5 1 203 370 577 2.43e-27 108
Msa1269500 MtrunA17_Chr4g0011041 32.653 196 120 4 1 189 389 579 9.01e-26 103
Msa1269500 MtrunA17_Chr1g0177611 32.500 200 121 5 1 195 251 441 1.66e-24 99.8
Msa1269500 MtrunA17_Chr1g0177591 32.500 200 121 5 1 195 380 570 1.96e-24 100
Msa1269500 MtrunA17_Chr2g0325961 31.088 193 121 4 1 193 370 550 2.86e-24 99.8
Msa1269500 MtrunA17_Chr1g0166741 33.898 177 104 3 1 172 373 541 4.40e-24 99.4
Msa1269500 MtrunA17_Chr2g0326211 30.570 193 122 4 1 193 369 549 6.33e-24 98.6
Msa1269500 MtrunA17_Chr7g0240271 27.368 190 129 3 1 185 379 564 9.33e-24 98.2
Msa1269500 MtrunA17_Chr7g0240281 29.703 202 133 3 1 197 381 578 1.72e-23 97.4
Msa1269500 MtrunA17_Chr7g0235521 25.000 212 149 4 1 206 268 475 2.41e-23 96.7
Msa1269500 MtrunA17_Chr2g0325951 31.443 194 120 5 1 193 368 549 2.53e-23 97.1
Msa1269500 MtrunA17_Chr7g0240211 25.000 212 149 4 1 206 268 475 3.44e-23 96.3
Msa1269500 MtrunA17_Chr7g0240181 25.000 212 149 4 1 206 268 475 3.47e-23 96.3
Msa1269500 MtrunA17_Chr7g0240131 26.203 187 129 3 1 182 268 450 4.22e-23 96.3
Msa1269500 MtrunA17_Chr1g0166771 32.961 179 107 3 1 174 337 507 4.86e-23 96.3
Msa1269500 MtrunA17_Chr1g0177631 32.597 181 108 5 20 195 270 441 7.06e-23 95.1
Msa1269500 MtrunA17_Chr4g0060001 31.844 179 108 4 18 188 397 569 1.88e-22 94.7
Msa1269500 MtrunA17_Chr1g0157621 29.255 188 126 3 1 182 325 511 2.05e-21 91.7
Msa1269500 MtrunA17_Chr1g0157601 30.435 184 121 3 1 178 361 543 7.11e-21 90.1
Msa1269500 MtrunA17_Chr2g0326221 29.534 193 111 5 1 193 58 225 1.00e-20 86.3
Msa1269500 MtrunA17_Chr1g0157611 29.381 194 130 3 1 188 362 554 1.15e-20 89.4
Msa1269500 MtrunA17_Chr7g0240151 24.880 209 135 4 1 206 268 457 1.76e-20 88.6
Msa1269500 MtrunA17_Chr7g0261751 42.353 85 49 0 1 85 413 497 3.63e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1269500 AT1G69850.1 44.776 201 106 1 1 196 384 584 1.79e-62 204
Msa1269500 AT1G27040.3 48.718 195 94 2 1 190 335 528 2.50e-62 202
Msa1269500 AT1G27040.2 48.718 195 94 2 1 190 363 556 5.74e-62 202
Msa1269500 AT1G27040.1 48.718 195 94 2 1 190 367 560 6.38e-62 202
Msa1269500 AT1G68570.2 45.813 203 104 2 1 197 342 544 8.30e-55 183
Msa1269500 AT1G33440.1 40.278 216 114 2 1 208 379 587 9.07e-55 184
Msa1269500 AT1G68570.1 45.813 203 104 2 1 197 372 574 1.54e-54 183
Msa1269500 AT5G62730.2 44.554 202 102 2 1 192 326 527 7.82e-53 177
Msa1269500 AT5G62730.1 44.118 204 104 2 1 194 385 588 1.70e-52 177
Msa1269500 AT1G59740.1 43.005 193 97 2 1 187 388 573 7.34e-50 171
Msa1269500 AT3G54450.1 40.796 201 113 3 1 196 348 547 8.78e-46 159
Msa1269500 AT5G01180.2 43.350 203 108 4 1 198 370 570 1.56e-45 159
Msa1269500 AT5G01180.3 43.350 203 108 4 1 198 370 570 1.56e-45 159
Msa1269500 AT5G01180.1 43.350 203 108 4 1 198 370 570 1.56e-45 159
Msa1269500 AT1G69870.1 43.519 216 110 5 1 207 402 614 3.12e-45 159
Msa1269500 AT1G72140.1 41.919 198 108 3 1 192 357 553 6.11e-43 151
Msa1269500 AT3G25280.1 42.708 192 98 3 1 188 338 521 5.47e-42 148
Msa1269500 AT1G72120.1 41.000 200 111 3 1 194 357 555 7.49e-42 149
Msa1269500 AT1G72125.1 39.500 200 114 3 1 194 361 559 1.12e-40 145
Msa1269500 AT1G22550.1 37.811 201 118 3 1 195 364 563 2.53e-40 144
Msa1269500 AT3G54140.1 40.306 196 110 3 1 191 370 563 6.24e-40 144
Msa1269500 AT3G54140.2 40.306 196 110 3 1 191 370 563 6.24e-40 144
Msa1269500 AT2G26690.3 39.500 200 110 4 1 195 324 517 3.48e-39 141
Msa1269500 AT2G26690.2 39.500 200 110 4 1 195 336 529 3.84e-39 141
Msa1269500 AT5G13400.1 37.745 204 119 4 1 197 415 617 5.70e-39 141
Msa1269500 AT2G26690.1 39.500 200 110 4 1 195 369 562 6.74e-39 140
Msa1269500 AT2G40460.1 39.000 200 116 3 1 195 361 559 2.22e-38 139
Msa1269500 AT2G02040.1 38.776 196 114 2 1 191 387 581 2.50e-38 139
Msa1269500 AT3G21670.1 40.104 192 106 3 1 191 375 558 7.06e-38 138
Msa1269500 AT1G22540.1 39.153 189 108 3 12 194 368 555 1.58e-37 137
Msa1269500 AT3G47960.1 38.049 205 117 4 1 196 410 613 1.69e-37 137
Msa1269500 AT2G02020.2 37.766 188 112 2 1 183 330 517 6.40e-37 135
Msa1269500 AT1G72130.2 37.949 195 109 3 1 190 227 414 7.14e-37 133
Msa1269500 AT1G72130.3 37.949 195 109 3 1 190 227 414 7.14e-37 133
Msa1269500 AT2G02020.1 37.766 188 112 2 1 183 351 538 7.39e-37 135
Msa1269500 AT3G25260.1 41.489 188 99 5 1 188 339 515 3.04e-36 133
Msa1269500 AT1G72130.1 37.755 196 110 3 1 191 345 533 3.73e-36 133
Msa1269500 AT5G62680.1 36.098 205 121 3 1 196 394 597 4.05e-36 133
Msa1269500 AT1G22570.2 35.961 203 121 4 1 195 326 527 4.07e-36 132
Msa1269500 AT1G22570.1 35.961 203 121 4 1 195 363 564 6.95e-36 132
Msa1269500 AT3G53960.1 34.673 199 121 4 1 194 382 576 2.52e-34 128
Msa1269500 AT1G62200.1 37.186 199 110 4 1 193 401 590 2.58e-34 128
Msa1269500 AT1G62200.2 37.186 199 110 4 1 193 430 619 3.38e-34 128
Msa1269500 AT1G18880.1 34.101 217 129 3 1 209 368 578 3.81e-34 128
Msa1269500 AT1G62200.3 37.186 199 110 4 1 193 444 633 4.08e-34 128
Msa1269500 AT1G32450.1 34.906 212 129 5 1 205 390 599 1.33e-33 126
Msa1269500 AT5G46050.2 39.810 211 120 4 1 206 258 466 1.61e-33 125
Msa1269500 AT1G12110.1 34.783 207 128 4 1 203 379 582 2.17e-33 125
Msa1269500 AT5G46050.1 39.810 211 120 4 1 206 370 578 4.83e-33 125
Msa1269500 AT5G46040.1 39.796 196 112 3 1 191 370 564 7.56e-33 124
Msa1269500 AT1G27080.2 35.096 208 117 5 1 203 322 516 1.50e-32 123
Msa1269500 AT1G27080.1 35.096 208 117 5 1 203 364 558 2.16e-32 123
Msa1269500 AT4G21680.1 34.328 201 124 3 1 194 377 576 9.83e-31 118
Msa1269500 AT1G69860.1 32.338 201 123 4 1 197 364 555 1.14e-30 118
Msa1269500 AT5G14940.1 29.557 203 134 4 1 197 348 547 1.26e-29 115
Msa1269500 AT3G01350.1 30.457 197 128 3 1 189 354 549 1.06e-28 112
Msa1269500 AT1G52190.1 30.476 210 138 4 1 204 374 581 2.51e-28 111
Msa1269500 AT2G37900.2 31.343 201 126 2 1 197 301 493 1.06e-27 109
Msa1269500 AT2G37900.1 31.818 198 123 2 1 194 380 569 1.30e-27 109
Msa1269500 AT3G16180.1 30.918 207 136 4 1 202 374 578 3.45e-27 108
Msa1269500 AT3G45660.2 32.353 204 131 5 1 202 377 575 8.51e-27 107
Msa1269500 AT3G45660.1 32.353 204 131 5 1 202 356 554 9.19e-27 107
Msa1269500 AT3G45660.3 32.353 204 131 5 1 202 356 554 9.19e-27 107
Msa1269500 AT3G45650.1 31.282 195 130 3 1 195 357 547 3.62e-26 105
Msa1269500 AT5G19640.1 29.744 195 117 5 1 189 402 582 7.16e-25 102
Msa1269500 AT3G45720.1 30.918 207 125 7 1 204 362 553 2.31e-23 97.4
Msa1269500 AT5G28470.2 27.500 200 135 3 1 196 366 559 4.73e-23 96.7
Msa1269500 AT3G45710.1 30.049 203 128 6 5 205 369 559 1.56e-22 95.1
Msa1269500 AT3G45650.2 28.054 221 129 4 1 195 357 573 5.07e-22 93.6
Msa1269500 AT3G45700.1 30.198 202 126 6 5 204 358 546 1.33e-20 89.7
Msa1269500 AT3G45680.1 30.769 156 96 4 42 196 403 547 1.94e-20 89.0
Msa1269500 AT5G28470.1 27.000 200 134 4 1 196 366 557 2.52e-20 89.0
Msa1269500 AT5G11570.1 25.926 189 132 3 1 188 295 476 1.57e-12 66.2
Msa1269500 AT2G38100.1 29.143 175 109 7 36 205 350 514 3.06e-11 62.4
Msa1269500 AT2G38100.2 30.120 166 101 7 45 205 343 498 3.23e-11 62.4
Msa1269500 AT2G38100.3 29.143 175 109 7 36 205 356 520 3.38e-11 62.4

Find 41 sgRNAs with CRISPR-Local

Find 51 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAGACATGTTTACACTTAT+TGG 0.112396 8_3:+2724183 Msa1269500:CDS
TTTACTTGGTTTGTGCTTCT+TGG 0.185331 8_3:+2724427 Msa1269500:CDS
CACTTAGTACAGCAATTTCT+TGG 0.276660 8_3:+2724250 Msa1269500:CDS
CACCTTCAAAGAATTGGAAT+TGG 0.306342 8_3:+2724009 Msa1269500:CDS
ATCTACCATATTATGTTCTA+TGG 0.326060 8_3:-2724097 None:intergenic
TCTTTGAAGGTGTCGGATTC+CGG 0.328102 8_3:-2723998 None:intergenic
ATCCGACACCTTCAAAGAAT+TGG 0.340962 8_3:+2724003 Msa1269500:CDS
GCTATATCAATGTTAGTTGC+TGG 0.355294 8_3:+2724045 Msa1269500:CDS
TGTAGCCATAGAACATAATA+TGG 0.362955 8_3:+2724092 Msa1269500:CDS
AAATGATGTTGACATGGTTA+AGG 0.368323 8_3:+2724491 Msa1269500:CDS
TCTTGGTGTTCTGTTGCATT+TGG 0.392399 8_3:+2724267 Msa1269500:CDS
CTCGGTCGTATAGAGGAATT+AGG 0.398446 8_3:-2723936 None:intergenic
ATGAACAATAGAGGGATTAC+TGG 0.402130 8_3:-2723907 None:intergenic
ATCCAATTCCAATTCTTTGA+AGG 0.403302 8_3:-2724011 None:intergenic
TCAAAGAATTGGAATTGGAT+TGG 0.444870 8_3:+2724014 Msa1269500:CDS
TTCTATGCAGAAAGTTCAGC+TGG 0.449535 8_3:+2724219 Msa1269500:CDS
GAAGGTGTCGGATTCCGGTT+GGG 0.455684 8_3:-2723993 None:intergenic
AGGACAAACATGAACAATAG+AGG 0.473937 8_3:-2723916 None:intergenic
TTCCAATTCTTTGAAGGTGT+CGG 0.483475 8_3:-2724005 None:intergenic
TGAAGGTGTCGGATTCCGGT+TGG 0.505122 8_3:-2723994 None:intergenic
ATTACTGGGAGGGAGGGTCC+TGG 0.515478 8_3:-2723892 None:intergenic
CTGTGATTCTTCGAATAAGC+GGG 0.518290 8_3:-2723966 None:intergenic
AGAATCACAGGAATCCCAAC+CGG 0.532778 8_3:+2723979 Msa1269500:CDS
AGAGGGATTACTGGGAGGGA+GGG 0.552016 8_3:-2723898 None:intergenic
CCGCTTATTCGAAGAATCAC+AGG 0.558543 8_3:+2723967 Msa1269500:CDS
TAGAGGGATTACTGGGAGGG+AGG 0.563260 8_3:-2723899 None:intergenic
CAAAGTGAGTGGTGGTTGGT+TGG 0.564096 8_3:+2724326 Msa1269500:CDS
CAATAGAGGGATTACTGGGA+GGG 0.581806 8_3:-2723902 None:intergenic
TTAACAAAGTGAGTGGTGGT+TGG 0.583530 8_3:+2724322 Msa1269500:CDS
GGACAAACATGAACAATAGA+GGG 0.591843 8_3:-2723915 None:intergenic
TACAAGCACAGTGGTTGTTG+AGG 0.592321 8_3:+2724296 Msa1269500:CDS
TGAACAATAGAGGGATTACT+GGG 0.612071 8_3:-2723906 None:intergenic
TGATTTAAATGATGTTGACA+TGG 0.624317 8_3:+2724485 Msa1269500:CDS
CCTGTGATTCTTCGAATAAG+CGG 0.644958 8_3:-2723967 None:intergenic
CAACATCATTTAAATCACCT+AGG 0.666986 8_3:-2724479 None:intergenic
TTGGTATAGATACAAAACAG+TGG 0.674197 8_3:+2724446 Msa1269500:CDS
GAGGTAGTTAACAAAGTGAG+TGG 0.707459 8_3:+2724315 Msa1269500:CDS
ACAATAGAGGGATTACTGGG+AGG 0.708379 8_3:-2723903 None:intergenic
ACAGTGGAAGACAAACACCT+AGG 0.710549 8_3:+2724462 Msa1269500:CDS
GTAGTTAACAAAGTGAGTGG+TGG 0.723635 8_3:+2724318 Msa1269500:CDS
TGGTTACTTTACAAGCACAG+TGG 0.730755 8_3:+2724287 Msa1269500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTAAACTTTGTATTTTACT+TGG + chr8_3:2724413-2724432 Msa1269500:CDS 20.0%
! ATCTACCATATTATGTTCTA+TGG - chr8_3:2724100-2724119 None:intergenic 25.0%
!!! GGTTTTCAATATGCTATTTT+TGG + chr8_3:2724156-2724175 Msa1269500:CDS 25.0%
!!! ACAAGCTTAACTACTTTTAT+TGG + chr8_3:2724370-2724389 Msa1269500:CDS 25.0%
! TGATTTAAATGATGTTGACA+TGG + chr8_3:2724485-2724504 Msa1269500:CDS 25.0%
ATCCAATTCCAATTCTTTGA+AGG - chr8_3:2724014-2724033 None:intergenic 30.0%
TCAAAGAATTGGAATTGGAT+TGG + chr8_3:2724014-2724033 Msa1269500:CDS 30.0%
TGTAGCCATAGAACATAATA+TGG + chr8_3:2724092-2724111 Msa1269500:CDS 30.0%
CAAAAAACACTCATTGGTAA+AGG - chr8_3:2724132-2724151 None:intergenic 30.0%
!!! CTTTACCAATGAGTGTTTTT+TGG + chr8_3:2724130-2724149 Msa1269500:CDS 30.0%
TTGGTATAGATACAAAACAG+TGG + chr8_3:2724446-2724465 Msa1269500:CDS 30.0%
CAACATCATTTAAATCACCT+AGG - chr8_3:2724482-2724501 None:intergenic 30.0%
AAATGATGTTGACATGGTTA+AGG + chr8_3:2724491-2724510 Msa1269500:CDS 30.0%
TGAACAATAGAGGGATTACT+GGG - chr8_3:2723909-2723928 None:intergenic 35.0%
ATGAACAATAGAGGGATTAC+TGG - chr8_3:2723910-2723929 None:intergenic 35.0%
GGACAAACATGAACAATAGA+GGG - chr8_3:2723918-2723937 None:intergenic 35.0%
AGGACAAACATGAACAATAG+AGG - chr8_3:2723919-2723938 None:intergenic 35.0%
! TTCCAATTCTTTGAAGGTGT+CGG - chr8_3:2724008-2724027 None:intergenic 35.0%
CACCTTCAAAGAATTGGAAT+TGG + chr8_3:2724009-2724028 Msa1269500:CDS 35.0%
GCTATATCAATGTTAGTTGC+TGG + chr8_3:2724045-2724064 Msa1269500:CDS 35.0%
!!! ACCAATGAGTGTTTTTTGGT+TGG + chr8_3:2724134-2724153 Msa1269500:CDS 35.0%
!!! CCAATGAGTGTTTTTTGGTT+GGG + chr8_3:2724135-2724154 Msa1269500:CDS 35.0%
GCAGACATGTTTACACTTAT+TGG + chr8_3:2724183-2724202 Msa1269500:CDS 35.0%
CACTTAGTACAGCAATTTCT+TGG + chr8_3:2724250-2724269 Msa1269500:CDS 35.0%
!! TTTACTTGGTTTGTGCTTCT+TGG + chr8_3:2724427-2724446 Msa1269500:CDS 35.0%
ACAAAAACTCGGTCGTATAG+AGG - chr8_3:2723946-2723965 None:intergenic 40.0%
GAATAAGCGGGACAAAAACT+CGG - chr8_3:2723957-2723976 None:intergenic 40.0%
CTGTGATTCTTCGAATAAGC+GGG - chr8_3:2723969-2723988 None:intergenic 40.0%
CCTGTGATTCTTCGAATAAG+CGG - chr8_3:2723970-2723989 None:intergenic 40.0%
ATCCGACACCTTCAAAGAAT+TGG + chr8_3:2724003-2724022 Msa1269500:CDS 40.0%
CCCAACCAAAAAACACTCAT+TGG - chr8_3:2724138-2724157 None:intergenic 40.0%
TTCTATGCAGAAAGTTCAGC+TGG + chr8_3:2724219-2724238 Msa1269500:CDS 40.0%
!! TCTTGGTGTTCTGTTGCATT+TGG + chr8_3:2724267-2724286 Msa1269500:CDS 40.0%
! TGGTTACTTTACAAGCACAG+TGG + chr8_3:2724287-2724306 Msa1269500:CDS 40.0%
GAGGTAGTTAACAAAGTGAG+TGG + chr8_3:2724315-2724334 Msa1269500:CDS 40.0%
GTAGTTAACAAAGTGAGTGG+TGG + chr8_3:2724318-2724337 Msa1269500:CDS 40.0%
TTAACAAAGTGAGTGGTGGT+TGG + chr8_3:2724322-2724341 Msa1269500:CDS 40.0%
CAATAGAGGGATTACTGGGA+GGG - chr8_3:2723905-2723924 None:intergenic 45.0%
ACAATAGAGGGATTACTGGG+AGG - chr8_3:2723906-2723925 None:intergenic 45.0%
CTCGGTCGTATAGAGGAATT+AGG - chr8_3:2723939-2723958 None:intergenic 45.0%
CCGCTTATTCGAAGAATCAC+AGG + chr8_3:2723967-2723986 Msa1269500:CDS 45.0%
AGAATCACAGGAATCCCAAC+CGG + chr8_3:2723979-2723998 Msa1269500:CDS 45.0%
!! TCTTTGAAGGTGTCGGATTC+CGG - chr8_3:2724001-2724020 None:intergenic 45.0%
TACAAGCACAGTGGTTGTTG+AGG + chr8_3:2724296-2724315 Msa1269500:CDS 45.0%
ACAGTGGAAGACAAACACCT+AGG + chr8_3:2724462-2724481 Msa1269500:CDS 45.0%
CAAAGTGAGTGGTGGTTGGT+TGG + chr8_3:2724326-2724345 Msa1269500:CDS 50.0%
AGAGGGATTACTGGGAGGGA+GGG - chr8_3:2723901-2723920 None:intergenic 55.0%
TAGAGGGATTACTGGGAGGG+AGG - chr8_3:2723902-2723921 None:intergenic 55.0%
!! GAAGGTGTCGGATTCCGGTT+GGG - chr8_3:2723996-2724015 None:intergenic 55.0%
!! TGAAGGTGTCGGATTCCGGT+TGG - chr8_3:2723997-2724016 None:intergenic 55.0%
ATTACTGGGAGGGAGGGTCC+TGG - chr8_3:2723895-2723914 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 2723889 2724518 2723889 ID=Msa1269500;Name=Msa1269500
chr8_3 mRNA 2723889 2724518 2723889 ID=Msa1269500-mRNA-1;Parent=Msa1269500;Name=Msa1269500-mRNA-1;_AED=0.20;_eAED=0.23;_QI=0|-1|0|1|-1|1|1|0|209
chr8_3 exon 2723889 2724518 2723889 ID=Msa1269500-mRNA-1:exon:883;Parent=Msa1269500-mRNA-1
chr8_3 CDS 2723889 2724518 2723889 ID=Msa1269500-mRNA-1:cds;Parent=Msa1269500-mRNA-1
Gene Sequence

>Msa1269500

ATGCCAGGACCCTCCCTCCCAGTAATCCCTCTATTGTTCATGTTTGTCCTAATTCCTCTATACGACCGAGTTTTTGTCCCGCTTATTCGAAGAATCACAGGAATCCCAACCGGAATCCGACACCTTCAAAGAATTGGAATTGGATTGGTTCTATCAGCTATATCAATGTTAGTTGCTGGTTTTGTCGAAACACGTCGAAAATCTGTAGCCATAGAACATAATATGGTAGATAGCACTGAGCCTTTACCAATGAGTGTTTTTTGGTTGGGTTTTCAATATGCTATTTTTGGAGCTGCAGACATGTTTACACTTATTGGACTTCTAGAGTTTTTCTATGCAGAAAGTTCAGCTGGAATGAAGTCACTTAGTACAGCAATTTCTTGGTGTTCTGTTGCATTTGGTTACTTTACAAGCACAGTGGTTGTTGAGGTAGTTAACAAAGTGAGTGGTGGTTGGTTGGCTAGTAATAACTTGAATAGAGACAAGCTTAACTACTTTTATTGGTTATTGTCAATCATAAGTGTTGTAAACTTTGTATTTTACTTGGTTTGTGCTTCTTGGTATAGATACAAAACAGTGGAAGACAAACACCTAGGTGATTTAAATGATGTTGACATGGTTAAGGTTTAA

Protein sequence

>Msa1269500

MPGPSLPVIPLLFMFVLIPLYDRVFVPLIRRITGIPTGIRHLQRIGIGLVLSAISMLVAGFVETRRKSVAIEHNMVDSTEPLPMSVFWLGFQYAIFGAADMFTLIGLLEFFYAESSAGMKSLSTAISWCSVAFGYFTSTVVVEVVNKVSGGWLASNNLNRDKLNYFYWLLSIISVVNFVFYLVCASWYRYKTVEDKHLGDLNDVDMVKV*