AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0472390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0472390 MtrunA17_Chr3g0128061 94.154 325 8 1 1 314 1 325 0.0 627
Msa0472390 MtrunA17_Chr1g0194151 51.692 325 141 5 6 314 8 332 1.06e-107 317
Msa0472390 MtrunA17_Chr1g0194271 50.301 332 142 6 6 314 8 339 4.14e-103 305
Msa0472390 MtrunA17_Chr1g0164891 53.311 302 127 4 27 314 90 391 1.21e-102 306
Msa0472390 MtrunA17_Chr4g0024121 43.396 318 168 2 8 314 9 325 5.44e-83 253
Msa0472390 MtrunA17_Chr2g0322861 46.082 319 150 7 12 314 73 385 1.45e-81 252
Msa0472390 MtrunA17_Chr1g0204011 44.127 315 160 5 11 314 12 321 2.98e-80 246
Msa0472390 MtrunA17_Chr7g0268501 44.201 319 161 6 8 314 6 319 3.99e-79 243
Msa0472390 MtrunA17_Chr7g0268521 44.201 319 161 6 8 314 6 319 3.99e-79 243
Msa0472390 MtrunA17_Chr8g0371381 45.098 306 148 6 21 314 21 318 2.94e-78 241
Msa0472390 MtrunA17_Chr5g0405991 43.949 314 156 6 13 314 10 315 6.88e-78 240
Msa0472390 MtrunA17_Chr5g0401431 41.562 320 172 5 9 314 10 328 9.09e-78 240
Msa0472390 MtrunA17_Chr7g0254201 43.894 303 151 5 22 313 16 310 1.15e-77 239
Msa0472390 MtrunA17_Chr2g0320061 41.615 322 167 5 6 314 4 317 4.46e-77 238
Msa0472390 MtrunA17_Chr7g0258811 40.798 326 172 5 8 316 51 372 1.18e-76 239
Msa0472390 MtrunA17_Chr8g0372601 45.215 303 153 3 24 314 28 329 3.13e-76 236
Msa0472390 MtrunA17_Chr2g0320051 40.994 322 169 5 6 314 4 317 8.51e-75 232
Msa0472390 MtrunA17_Chr2g0320071 40.190 316 170 3 10 314 9 316 2.10e-74 231
Msa0472390 MtrunA17_Chr5g0404721 44.781 297 151 3 30 314 34 329 8.52e-74 230
Msa0472390 MtrunA17_Chr1g0188431 40.181 331 166 7 4 314 8 326 1.17e-73 229
Msa0472390 MtrunA17_Chr1g0157051 40.063 317 173 5 10 315 8 318 1.78e-73 229
Msa0472390 MtrunA17_Chr2g0320091 39.103 312 172 2 14 314 13 317 3.60e-73 228
Msa0472390 MtrunA17_Chr4g0013201 41.584 303 158 3 23 314 43 337 5.36e-73 228
Msa0472390 MtrunA17_Chr2g0320031 40.789 304 160 4 23 314 23 318 7.02e-73 227
Msa0472390 MtrunA17_Chr7g0254231 43.478 299 147 5 26 313 22 309 7.70e-73 227
Msa0472390 MtrunA17_Chr6g0477071 41.333 300 153 6 26 314 54 341 1.53e-72 227
Msa0472390 MtrunA17_Chr5g0402581 41.009 317 173 4 10 314 11 325 7.59e-72 225
Msa0472390 MtrunA17_Chr2g0279041 42.249 329 164 8 1 311 1 321 9.34e-72 224
Msa0472390 MtrunA17_Chr1g0175561 39.688 320 178 4 11 316 9 327 9.88e-72 225
Msa0472390 MtrunA17_Chr3g0129051 40.317 315 166 5 11 312 14 319 1.28e-71 224
Msa0472390 MtrunA17_Chr2g0320101 39.241 316 173 3 10 314 9 316 5.10e-71 223
Msa0472390 MtrunA17_Chr4g0063671 41.587 315 162 6 13 311 8 316 6.63e-71 222
Msa0472390 MtrunA17_Chr5g0402571 40.694 317 174 4 10 314 11 325 7.34e-71 223
Msa0472390 MtrunA17_Chr2g0292271 38.554 332 187 4 1 316 1 331 1.09e-70 223
Msa0472390 MtrunA17_Chr7g0244461 39.117 317 174 3 10 315 4 312 4.59e-70 220
Msa0472390 MtrunA17_Chr4g0053871 40.566 318 169 7 11 314 12 323 5.01e-70 220
Msa0472390 MtrunA17_Chr2g0291751 40.063 317 176 3 11 314 14 329 1.01e-69 220
Msa0472390 MtrunA17_Chr2g0292261 38.855 332 186 4 1 316 1 331 1.44e-69 220
Msa0472390 MtrunA17_Chr5g0432441 40.498 321 170 4 6 312 10 323 2.43e-69 218
Msa0472390 MtrunA17_Chr4g0072091 42.053 302 155 7 25 311 23 319 2.67e-69 218
Msa0472390 MtrunA17_Chr2g0292241 39.748 317 177 3 11 314 14 329 4.80e-69 219
Msa0472390 MtrunA17_Chr5g0438021 39.688 320 169 5 8 314 16 324 5.77e-69 218
Msa0472390 MtrunA17_Chr3g0129061 40.000 325 173 5 1 312 4 319 5.83e-69 218
Msa0472390 MtrunA17_Chr2g0292111 39.564 321 178 4 9 314 10 329 1.29e-68 218
Msa0472390 MtrunA17_Chr2g0292211 39.308 318 179 3 10 314 24 340 1.58e-68 218
Msa0472390 MtrunA17_Chr7g0244451 39.617 313 170 3 13 314 11 315 4.47e-68 215
Msa0472390 MtrunA17_Chr1g0213061 39.564 321 171 6 8 314 9 320 5.24e-68 215
Msa0472390 MtrunA17_Chr4g0043391 39.117 317 173 4 12 314 13 323 6.71e-68 215
Msa0472390 MtrunA17_Chr7g0225221 38.889 324 173 8 4 311 2 316 1.09e-67 214
Msa0472390 MtrunA17_Chr4g0038151 37.771 323 182 3 5 314 4 320 1.64e-67 214
Msa0472390 MtrunA17_Chr2g0292181 38.486 317 181 3 11 314 23 338 2.37e-67 214
Msa0472390 MtrunA17_Chr1g0148021 38.080 323 184 6 6 314 7 327 4.87e-67 213
Msa0472390 MtrunA17_Chr4g0038171 38.889 324 177 5 5 314 4 320 6.46e-67 212
Msa0472390 MtrunA17_Chr2g0292151 39.564 321 178 5 9 314 10 329 1.04e-66 213
Msa0472390 MtrunA17_Chr4g0013191 40.328 305 160 5 24 314 43 339 1.96e-66 211
Msa0472390 MtrunA17_Chr4g0038161 38.170 317 177 3 11 314 9 319 8.63e-66 209
Msa0472390 MtrunA17_Chr5g0432351 38.344 326 176 7 5 314 4 320 1.27e-65 209
Msa0472390 MtrunA17_Chr2g0292091 36.923 325 191 3 5 316 3 326 1.60e-65 209
Msa0472390 MtrunA17_Chr4g0068621 40.132 304 165 5 24 314 36 335 2.49e-65 209
Msa0472390 MtrunA17_Chr3g0107881 38.438 320 173 6 8 311 9 320 2.53e-65 208
Msa0472390 MtrunA17_Chr4g0070951 39.009 323 177 5 8 314 10 328 2.96e-65 208
Msa0472390 MtrunA17_Chr4g0013171 38.978 313 170 5 13 312 14 318 8.54e-65 207
Msa0472390 MtrunA17_Chr4g0013721 39.344 305 170 4 21 314 95 395 9.37e-65 209
Msa0472390 MtrunA17_Chr6g0460711 37.580 314 178 5 10 312 5 311 1.57e-64 206
Msa0472390 MtrunA17_Chr5g0432341 37.730 326 178 7 5 314 4 320 1.73e-64 206
Msa0472390 MtrunA17_Chr3g0106921 38.125 320 176 5 7 312 6 317 1.86e-64 206
Msa0472390 MtrunA17_Chr3g0129041 38.580 324 179 4 1 312 4 319 2.52e-64 206
Msa0472390 MtrunA17_Chr2g0292101 38.245 319 183 3 11 316 10 327 3.04e-64 206
Msa0472390 MtrunA17_Chr1g0155611 40.268 298 164 3 30 314 50 346 5.74e-64 205
Msa0472390 MtrunA17_Chr2g0292251 38.762 307 174 3 21 314 23 328 1.03e-63 205
Msa0472390 MtrunA17_Chr2g0299691 39.937 318 168 5 17 314 43 357 1.10e-63 205
Msa0472390 MtrunA17_Chr7g0224371 38.851 296 161 3 30 314 35 321 1.11e-63 204
Msa0472390 MtrunA17_Chr4g0046131 39.404 302 168 4 25 311 41 342 2.26e-63 204
Msa0472390 MtrunA17_Chr3g0114451 39.145 304 166 3 22 314 22 317 2.41e-63 203
Msa0472390 MtrunA17_Chr5g0432331 38.080 323 173 8 10 314 38 351 2.46e-62 201
Msa0472390 MtrunA17_Chr4g0013181 38.851 296 160 5 30 312 63 350 7.63e-62 200
Msa0472390 MtrunA17_Chr4g0076211 38.796 299 162 6 28 314 43 332 1.11e-61 199
Msa0472390 MtrunA17_Chr2g0279061 45.136 257 127 6 61 311 14 262 3.83e-61 196
Msa0472390 MtrunA17_Chr5g0400331 40.066 302 163 5 30 314 30 330 6.17e-61 197
Msa0472390 MtrunA17_Chr3g0106901 39.937 318 169 4 8 314 16 322 7.15e-61 197
Msa0472390 MtrunA17_Chr2g0292291 36.164 318 190 2 11 315 15 332 9.10e-61 197
Msa0472390 MtrunA17_Chr1g0197411 37.812 320 185 4 6 311 7 326 9.29e-61 197
Msa0472390 MtrunA17_Chr3g0136751 37.037 324 185 6 1 311 1 318 5.98e-60 194
Msa0472390 MtrunA17_Chr5g0413051 39.474 304 167 6 25 312 72 374 1.82e-59 194
Msa0472390 MtrunA17_Chr4g0013821 36.424 302 177 4 24 314 26 323 2.72e-59 193
Msa0472390 MtrunA17_Chr6g0467121 37.846 325 171 7 11 316 52 364 7.52e-59 193
Msa0472390 MtrunA17_Chr8g0364291 38.535 314 181 2 10 311 7 320 1.07e-58 191
Msa0472390 MtrunA17_Chr2g0329641 37.954 303 168 5 25 312 35 332 2.34e-58 191
Msa0472390 MtrunA17_Chr6g0467161 37.037 324 172 8 11 314 24 335 4.04e-58 190
Msa0472390 MtrunA17_Chr2g0296621 38.079 302 163 8 26 314 50 340 1.15e-57 189
Msa0472390 MtrunA17_Chr6g0467251 36.455 299 167 6 26 311 36 324 4.29e-54 180
Msa0472390 MtrunA17_Chr6g0451571 36.842 304 175 4 22 311 30 330 2.88e-53 177
Msa0472390 MtrunA17_Chr5g0421411 38.931 262 148 5 61 314 27 284 3.62e-53 176
Msa0472390 MtrunA17_Chr1g0181511 34.868 304 179 4 24 314 25 322 4.75e-53 176
Msa0472390 MtrunA17_Chr2g0278671 38.312 308 164 8 22 311 20 319 7.45e-53 176
Msa0472390 MtrunA17_Chr1g0181431 34.539 304 180 4 24 314 25 322 1.77e-52 175
Msa0472390 MtrunA17_Chr1g0181481 33.987 306 183 4 24 316 25 324 2.93e-51 172
Msa0472390 MtrunA17_Chr2g0311251 33.133 332 181 6 24 314 9 340 5.55e-49 166
Msa0472390 MtrunA17_Chr2g0316791 32.827 329 180 5 24 311 74 402 2.81e-48 166
Msa0472390 MtrunA17_Chr2g0316481 33.030 330 178 6 24 311 74 402 1.09e-47 165
Msa0472390 MtrunA17_Chr4g0075241 33.221 298 186 3 25 311 28 323 2.61e-47 162
Msa0472390 MtrunA17_Chr2g0316831 32.727 330 179 6 24 311 110 438 5.90e-47 164
Msa0472390 MtrunA17_Chr2g0316191 32.326 331 180 6 24 311 74 403 2.10e-46 161
Msa0472390 MtrunA17_Chr4g0004591 34.416 308 154 5 26 314 77 355 6.70e-44 153
Msa0472390 MtrunA17_Chr4g0074851 30.892 314 196 5 15 313 19 326 4.66e-43 150
Msa0472390 MtrunA17_Chr5g0432401 32.822 326 153 9 6 315 11 286 8.99e-43 149
Msa0472390 MtrunA17_Chr2g0292281 40.758 211 110 4 107 314 17 215 1.02e-42 147
Msa0472390 MtrunA17_Chr2g0311241 30.400 375 175 8 24 314 58 430 1.80e-42 151
Msa0472390 MtrunA17_Chr2g0316141 31.338 284 144 7 60 311 10 274 2.95e-35 129
Msa0472390 MtrunA17_Chr2g0316181 31.338 284 144 7 60 311 10 274 2.95e-35 129
Msa0472390 MtrunA17_Chr3g0114461 37.234 188 109 3 126 312 10 189 4.51e-34 123
Msa0472390 MtrunA17_Chr2g0316811 32.759 232 127 5 24 227 48 278 1.25e-29 115
Msa0472390 MtrunA17_Chr7g0254181 50.000 108 50 2 74 181 19 122 7.07e-27 103
Msa0472390 MtrunA17_Chr1g0181501 32.979 188 118 3 131 316 9 190 3.73e-26 102
Msa0472390 MtrunA17_Chr5g0432321 40.000 125 66 3 136 260 17 132 1.24e-22 91.3
Msa0472390 MtrunA17_Chr3g0114491 45.045 111 50 1 23 122 15 125 2.69e-19 82.8
Msa0472390 MtrunA17_Chr1g0196191 55.882 68 29 1 56 123 26 92 5.72e-16 73.9
Msa0472390 MtrunA17_Chr3g0104101 34.028 144 83 5 179 314 9 148 7.47e-16 73.6
Msa0472390 MtrunA17_Chr7g0254171 34.559 136 84 3 61 194 4 136 5.37e-15 70.9
Msa0472390 MtrunA17_Chr6g0468731 60.938 64 21 2 61 124 29 88 7.52e-15 68.9
Msa0472390 MtrunA17_Chr1g0181491 34.821 112 62 2 24 125 10 120 4.11e-14 68.9
Msa0472390 MtrunA17_Chr7g0268491 45.349 86 38 2 233 314 16 96 3.17e-13 64.7
Msa0472390 MtrunA17_Chr3g0137751 27.007 274 128 10 40 294 90 310 3.43e-13 69.3
Msa0472390 MtrunA17_Chr5g0423911 48.485 66 34 0 246 311 2 67 4.56e-12 62.0
Msa0472390 MtrunA17_Chr5g0432361 36.250 80 49 1 238 315 30 109 5.33e-12 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0472390 AT1G05260.1 45.794 321 155 7 9 313 6 323 1.20e-82 253
Msa0472390 AT5G42180.1 42.638 326 167 6 1 315 1 317 4.96e-81 248
Msa0472390 AT3G21770.1 45.130 308 151 7 20 313 23 326 7.74e-81 248
Msa0472390 AT4G11290.1 43.887 319 163 6 10 314 9 325 9.06e-79 243
Msa0472390 AT5G51890.1 44.272 323 162 7 4 314 5 321 7.39e-78 241
Msa0472390 AT2G18980.1 40.867 323 170 7 7 314 6 322 1.31e-76 237
Msa0472390 AT5G06730.1 40.125 319 177 3 11 316 18 335 6.26e-76 237
Msa0472390 AT3G03670.1 41.905 315 166 4 11 312 8 318 1.89e-75 234
Msa0472390 AT3G01190.1 43.789 322 160 8 4 312 5 318 2.30e-75 234
Msa0472390 AT4G33420.1 43.082 318 157 7 9 314 19 324 1.53e-74 232
Msa0472390 AT2G38390.1 41.250 320 173 4 9 314 14 332 5.40e-74 231
Msa0472390 AT4G33420.2 45.000 300 142 6 26 314 84 371 5.86e-74 232
Msa0472390 AT4G30170.1 40.984 305 161 6 24 314 25 324 4.01e-73 228
Msa0472390 AT5G17820.1 42.628 312 157 5 12 312 10 310 9.72e-73 227
Msa0472390 AT4G08770.1 42.444 311 157 6 22 314 20 326 7.67e-72 226
Msa0472390 AT5G17820.2 42.308 312 158 5 12 312 63 363 1.17e-71 226
Msa0472390 AT2G18140.1 41.751 297 160 3 30 314 39 334 2.65e-71 224
Msa0472390 AT1G05240.1 42.667 300 154 6 26 311 26 321 1.29e-70 222
Msa0472390 AT1G05250.1 42.667 300 154 6 26 311 26 321 1.29e-70 222
Msa0472390 AT1G14540.1 39.062 320 174 5 9 314 2 314 2.45e-70 221
Msa0472390 AT2G38380.1 40.187 321 177 4 9 315 14 333 3.50e-70 222
Msa0472390 AT2G18150.1 41.946 298 160 3 29 314 39 335 3.52e-70 221
Msa0472390 AT5G64120.1 40.549 328 164 8 11 314 7 327 5.85e-70 221
Msa0472390 AT5G06720.1 37.931 319 184 3 11 316 17 334 9.30e-70 220
Msa0472390 AT5G14130.1 39.062 320 180 4 4 311 10 326 1.03e-69 220
Msa0472390 AT4G37530.1 41.447 304 163 5 22 311 23 325 1.63e-69 219
Msa0472390 AT4G36430.1 38.486 317 182 3 10 314 14 329 2.09e-69 219
Msa0472390 AT5G14130.2 39.062 320 180 4 4 311 51 367 2.25e-69 220
Msa0472390 AT4G08780.1 41.479 311 160 6 22 314 20 326 3.67e-69 219
Msa0472390 AT5G66390.1 41.077 297 162 3 30 314 37 332 1.35e-68 217
Msa0472390 AT5G19880.1 38.941 321 179 5 10 314 9 328 1.57e-68 217
Msa0472390 AT4G37520.1 41.391 302 162 5 24 311 25 325 6.52e-68 215
Msa0472390 AT1G71695.1 42.525 301 149 7 26 311 44 335 8.04e-68 216
Msa0472390 AT5G15180.1 41.528 301 160 5 26 314 32 328 8.91e-68 215
Msa0472390 AT4G26010.1 41.270 315 159 6 11 313 7 307 1.56e-67 214
Msa0472390 AT1G44970.1 41.368 307 166 4 21 314 40 345 1.63e-67 215
Msa0472390 AT4G26010.2 41.270 315 159 6 11 313 35 335 2.92e-67 214
Msa0472390 AT3G49960.1 38.413 315 179 5 11 311 12 325 3.66e-67 213
Msa0472390 AT3G32980.1 40.584 308 167 4 22 314 27 333 4.33e-67 214
Msa0472390 AT5G58390.1 40.506 316 168 4 10 312 5 313 5.17e-67 213
Msa0472390 AT5G58400.1 40.694 317 166 6 10 312 14 322 7.09e-67 213
Msa0472390 AT5G05340.1 38.235 306 168 4 19 311 23 320 1.10e-66 212
Msa0472390 AT2G41480.1 39.755 327 174 7 5 314 7 327 3.50e-66 211
Msa0472390 AT4G31760.1 37.846 325 182 6 5 314 6 325 3.88e-66 211
Msa0472390 AT3G49110.1 40.584 308 167 4 22 314 29 335 4.25e-66 211
Msa0472390 AT1G49570.1 40.864 301 165 2 24 311 46 346 5.85e-66 211
Msa0472390 AT2G39040.1 42.395 309 155 8 25 314 45 349 9.09e-66 211
Msa0472390 AT3G50990.1 39.869 306 171 3 21 314 36 340 1.44e-65 210
Msa0472390 AT1G14550.1 37.920 327 183 5 1 314 1 320 2.72e-65 208
Msa0472390 AT5G67400.1 38.390 323 179 6 8 311 4 325 2.94e-65 208
Msa0472390 AT4G37520.2 40.728 302 161 6 24 311 25 322 4.88e-65 208
Msa0472390 AT2G22420.1 40.203 296 162 4 30 314 27 318 1.19e-64 207
Msa0472390 AT5G22410.1 38.558 319 172 9 10 312 12 322 4.65e-63 203
Msa0472390 AT3G49120.1 39.869 306 168 4 24 314 30 334 1.45e-62 202
Msa0472390 AT2G34060.1 39.414 307 169 5 23 313 39 344 2.27e-62 201
Msa0472390 AT4G33870.1 35.629 334 169 5 23 311 65 397 5.69e-62 202
Msa0472390 AT5G39580.1 39.062 320 176 8 7 314 6 318 2.59e-61 198
Msa0472390 AT5G19890.1 37.812 320 177 6 10 314 14 326 6.35e-61 197
Msa0472390 AT2G35380.1 39.604 303 165 5 29 314 33 334 8.35e-61 197
Msa0472390 AT4G37530.2 43.411 258 131 5 24 267 25 281 3.20e-60 194
Msa0472390 AT2G24800.1 37.500 304 173 4 24 314 29 328 6.72e-60 195
Msa0472390 AT5G64110.1 41.667 300 154 7 29 314 37 329 5.37e-59 192
Msa0472390 AT5G64100.1 40.397 302 157 7 27 314 38 330 1.74e-58 191
Msa0472390 AT1G34510.1 39.241 316 166 6 9 312 5 306 1.31e-57 188
Msa0472390 AT4G25980.1 36.533 323 182 8 5 311 7 322 3.16e-57 187
Msa0472390 AT1G77100.1 36.778 329 170 10 6 311 2 315 1.03e-56 186
Msa0472390 AT4G16270.1 37.874 301 172 4 26 314 50 347 2.09e-55 184
Msa0472390 AT5G24070.1 37.374 297 165 6 32 313 43 333 2.38e-54 181
Msa0472390 AT2G43480.1 37.374 297 163 6 34 314 45 334 5.07e-54 180
Msa0472390 AT5G40150.1 37.419 310 175 4 18 314 24 327 1.08e-53 179
Msa0472390 AT1G68850.1 35.599 309 175 7 26 314 30 334 6.08e-53 177
Msa0472390 AT1G30870.1 37.667 300 164 7 26 311 51 341 1.22e-52 176
Msa0472390 AT3G28200.1 37.134 307 173 4 21 314 16 315 2.96e-52 174
Msa0472390 AT4G17690.1 36.610 295 168 4 30 311 30 318 5.65e-52 174
Msa0472390 AT5G47000.1 36.789 299 171 4 26 311 33 326 3.99e-50 169
Msa0472390 AT2G35380.2 39.184 245 142 4 76 314 3 246 4.98e-48 161
Msa0472390 AT2G37130.1 33.224 304 183 5 25 314 29 326 7.26e-47 161
Msa0472390 AT1G24110.1 35.968 253 158 3 61 311 68 318 1.69e-45 157
Msa0472390 AT2G37130.2 32.890 301 182 5 28 314 1 295 2.15e-45 156
Msa0472390 AT3G17070.1 34.098 305 175 6 26 311 38 335 2.78e-44 154
Msa0472390 AT4G21960.1 32.237 304 187 4 21 311 26 323 5.90e-44 153
Msa0472390 AT3G17070.2 36.154 260 151 5 60 311 20 272 3.29e-42 147
Msa0472390 AT5G39580.2 40.722 194 99 5 7 189 6 194 8.61e-36 129
Msa0472390 AT2G24800.2 39.881 168 86 3 24 180 29 192 2.14e-31 118
Msa0472390 AT4G25980.2 37.566 189 101 5 5 182 52 234 1.55e-30 117
Msa0472390 AT3G42570.1 35.772 123 68 4 67 182 31 149 1.78e-12 64.7
Msa0472390 AT4G32320.1 36.697 109 64 2 77 185 144 247 3.05e-11 63.9

Find 79 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTCTGAGACTTGGTTTAT+TGG 0.121750 3_3:+74805286 None:intergenic
TAATTATGCAATTATAGTTT+TGG 0.280737 3_3:-74805744 Msa0472390:CDS
CTCATTCTCAGCTGGAGGTT+GGG 0.311339 3_3:-74805697 Msa0472390:CDS
AATTTGTTTGACCATAGATA+TGG 0.313045 3_3:+74804515 None:intergenic
TTCATGCAGGCTGGAGGGCT+TGG 0.319166 3_3:-74805078 Msa0472390:intron
CCATTGGAACCACCAAGTTT+TGG 0.325196 3_3:+74804672 None:intergenic
GTCTTTCTCTGCAGTGTTTG+AGG 0.345242 3_3:+74805316 None:intergenic
TATCCTACATCTGCAGTTCC+AGG 0.345777 3_3:+74804638 None:intergenic
TCTGCAGTTCCAGGGCTAGA+AGG 0.363484 3_3:+74804647 None:intergenic
CTGAGACTTGGTTTATTGGC+TGG 0.366197 3_3:+74805290 None:intergenic
CTTCAATAGTGCAGCATATG+AGG 0.366457 3_3:+74804721 None:intergenic
TTCCCATCTCTTCTTCCTGC+AGG 0.381304 3_3:+74805045 None:intergenic
TCTTTCTCTGCAGTGTTTGA+GGG 0.401235 3_3:+74805317 None:intergenic
GATGAAATGGTCACTCTCTC+TGG 0.402413 3_3:-74804925 Msa0472390:intron
GACAAATTGCAGGGTGGTCA+AGG 0.406914 3_3:-74804429 Msa0472390:CDS
GCTCATTCTCAGCTGGAGGT+TGG 0.417129 3_3:-74805698 Msa0472390:CDS
ACAAGGCCAGCAGCAATTCC+AGG 0.419294 3_3:+74805602 None:intergenic
ATGCTAGGAATCCATATCTA+TGG 0.420617 3_3:-74804526 Msa0472390:CDS
CTCAGCCATGCCACATGAAT+AGG 0.436631 3_3:+74805667 None:intergenic
CACTCAACTCTTTGCAAAGA+AGG 0.436803 3_3:-74804959 Msa0472390:CDS
GAGAGATTAGGACAAATTGC+AGG 0.439194 3_3:-74804439 Msa0472390:CDS
CAGGTAATGCTGGAGAGATT+AGG 0.441022 3_3:-74804451 Msa0472390:CDS
GGGGTTAACACAAGATGAAA+TGG 0.449662 3_3:-74804938 Msa0472390:CDS
AGGATACTATAATGATATCT+TGG 0.455594 3_3:-74804621 Msa0472390:CDS
AAAAGTTTCAATAAGAATCC+TGG 0.459318 3_3:-74805620 Msa0472390:CDS
AATGATATCTTGGCAAATAG+AGG 0.465257 3_3:-74804611 Msa0472390:CDS
CCAAAACTTGGTGGTTCCAA+TGG 0.483014 3_3:-74804672 Msa0472390:CDS
TGCAGATGCAATGGTGAAGA+TGG 0.483491 3_3:-74804492 Msa0472390:CDS
ACTCAACTCTTTGCAAAGAA+GGG 0.487767 3_3:-74804958 Msa0472390:CDS
CTGCAGTTCCAGGGCTAGAA+GGG 0.488749 3_3:+74804648 None:intergenic
CCTTATTTCATGCAGGCTGG+AGG 0.492008 3_3:-74805084 Msa0472390:intron
CAGAAGTGCTCATTCTCAGC+TGG 0.493768 3_3:-74805705 Msa0472390:CDS
AGGGATCTAAACTTGGATCC+TGG 0.499621 3_3:+74804741 None:intergenic
TTATACCTATTCATGTGGCA+TGG 0.502277 3_3:-74805672 Msa0472390:CDS
CTTCAGCAGCACTTCAATCC+AGG 0.504752 3_3:-74804759 Msa0472390:CDS
CTTATTTCATGCAGGCTGGA+GGG 0.511740 3_3:-74805083 Msa0472390:intron
CATAGTTGCATTTGCAGCAA+GGG 0.512485 3_3:-74805195 Msa0472390:CDS
GCCAATAAACCAAGTCTCAG+AGG 0.515910 3_3:-74805287 Msa0472390:CDS
GTTCCTGCAGGAAGAAGAGA+TGG 0.516777 3_3:-74805048 Msa0472390:CDS
ACTTCAAACCCTCTGAGACT+TGG 0.516939 3_3:+74805278 None:intergenic
TTGCAAAGAGTTGAGTGAGT+TGG 0.517329 3_3:+74804965 None:intergenic
AAGAATCCTGGAATTGCTGC+TGG 0.519387 3_3:-74805608 Msa0472390:CDS
AGTTGGTTAACATCAAAAGT+TGG 0.521507 3_3:+74804982 None:intergenic
CCAATGGACCCTTCTAGCCC+TGG 0.523200 3_3:-74804656 Msa0472390:CDS
GAAAAGTTCATCAAAATGCT+AGG 0.531508 3_3:-74804541 Msa0472390:CDS
CCAGGGCTAGAAGGGTCCAT+TGG 0.535741 3_3:+74804656 None:intergenic
GGACAGATCAGTGTCTTGAC+AGG 0.536846 3_3:-74804470 Msa0472390:CDS
AGCAAGGGATAGTGTGGAGT+TGG 0.539211 3_3:-74805180 Msa0472390:intron
GCATATGAGGGATCTAAACT+TGG 0.540192 3_3:+74804734 None:intergenic
AGTGTCTTGACAGGTAATGC+TGG 0.543673 3_3:-74804461 Msa0472390:CDS
CAGACTCTCTTAACTAACAC+TGG 0.545200 3_3:-74804572 Msa0472390:CDS
AGGAAACACAAACCAAAACT+TGG 0.546354 3_3:-74804684 Msa0472390:CDS
CTTGGCTATGATGTTCCTGC+AGG 0.548718 3_3:-74805060 Msa0472390:CDS
TGAAGTTATTGATAATGCAA+AGG 0.550563 3_3:-74805261 Msa0472390:CDS
ACAAATTGCAGGGTGGTCAA+GGG 0.556617 3_3:-74804428 Msa0472390:CDS
AAACAAATTTGCAGATGCAA+TGG 0.561559 3_3:-74804501 Msa0472390:CDS
ATTGTAGGGGTGTGACGCAT+CGG 0.571016 3_3:-74805357 Msa0472390:intron
ATCCTACATCTGCAGTTCCA+GGG 0.571284 3_3:+74804639 None:intergenic
TTCAATAGTGCAGCATATGA+GGG 0.574062 3_3:+74804722 None:intergenic
CTCAACTCTTTGCAAAGAAG+GGG 0.582876 3_3:-74804957 Msa0472390:CDS
TATGCAGGCGCACACACCAT+TGG 0.583387 3_3:-74804821 Msa0472390:intron
ACATAGTTGCATTTGCAGCA+AGG 0.583439 3_3:-74805196 Msa0472390:CDS
TTAACATCAAAAGTTGGAGG+AGG 0.589438 3_3:+74804988 None:intergenic
CATATGCTGCACTATTGAAG+AGG 0.596880 3_3:-74804718 Msa0472390:CDS
AAACACAAACCAAAACTTGG+TGG 0.603250 3_3:-74804681 Msa0472390:CDS
GTATAATCTCTTGCTGAAAG+CGG 0.607977 3_3:+74804784 None:intergenic
TGGTTAACATCAAAAGTTGG+AGG 0.612018 3_3:+74804985 None:intergenic
AGCCCTGGAACTGCAGATGT+AGG 0.621715 3_3:-74804641 Msa0472390:CDS
TGAGTTCATTGTAAAAGATG+AGG 0.626057 3_3:-74805648 Msa0472390:CDS
AAGTGCTCATTCTCAGCTGG+AGG 0.626276 3_3:-74805702 Msa0472390:CDS
GCAGATGCAATGGTGAAGAT+GGG 0.629250 3_3:-74804491 Msa0472390:CDS
CCAATAAACCAAGTCTCAGA+GGG 0.630840 3_3:-74805286 Msa0472390:CDS
TTGAAGAGGCAATGTCCACA+AGG 0.631527 3_3:-74804704 Msa0472390:CDS
ATTTGCAGCAAGGGATAGTG+TGG 0.650496 3_3:-74805186 Msa0472390:CDS
AAACTCGAAGAAGAATGCAA+AGG 0.664647 3_3:-74805236 Msa0472390:CDS
AGAGATTAGGACAAATTGCA+GGG 0.665767 3_3:-74804438 Msa0472390:CDS
GGAGCAATGAGAGCGACCAA+TGG 0.668056 3_3:+74804805 None:intergenic
TTCCTGCAGGAAGAAGAGAT+GGG 0.669526 3_3:-74805047 Msa0472390:CDS
GATTAGGACAAATTGCAGGG+TGG 0.768369 3_3:-74804435 Msa0472390:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGCATAATTAAGTTTTTT+CGG + chr3_3:74804433-74804452 None:intergenic 15.0%
!!! TAATTATGCAATTATAGTTT+TGG - chr3_3:74804441-74804460 Msa0472390:CDS 15.0%
!! TTTAGTAATTTCCAAAATAA+CGG + chr3_3:74804754-74804773 None:intergenic 15.0%
!!! ATTGCATAATTAAGTTTTTT+CGG + chr3_3:74804433-74804452 None:intergenic 15.0%
!!! TAATTATGCAATTATAGTTT+TGG - chr3_3:74804441-74804460 Msa0472390:CDS 15.0%
!! TTTAGTAATTTCCAAAATAA+CGG + chr3_3:74804754-74804773 None:intergenic 15.0%
!!! ATCATATAATTCCGTTATTT+TGG - chr3_3:74804740-74804759 Msa0472390:CDS 20.0%
!! ATGAAATAAGGAATGATTTA+GGG + chr3_3:74805092-74805111 None:intergenic 20.0%
!! TTATAGCTTAAATTTGAATG+AGG - chr3_3:74805327-74805346 Msa0472390:CDS 20.0%
!!! ATCATATAATTCCGTTATTT+TGG - chr3_3:74804740-74804759 Msa0472390:CDS 20.0%
!! ATGAAATAAGGAATGATTTA+GGG + chr3_3:74805092-74805111 None:intergenic 20.0%
!! TTATAGCTTAAATTTGAATG+AGG - chr3_3:74805327-74805346 Msa0472390:CDS 20.0%
! AAAAGTTTCAATAAGAATCC+TGG - chr3_3:74804565-74804584 Msa0472390:CDS 25.0%
!!! TGAAGTTATTGATAATGCAA+AGG - chr3_3:74804924-74804943 Msa0472390:intron 25.0%
! CATGAAATAAGGAATGATTT+AGG + chr3_3:74805093-74805112 None:intergenic 25.0%
! AGGATACTATAATGATATCT+TGG - chr3_3:74805564-74805583 Msa0472390:intron 25.0%
!! AATTTGTTTGACCATAGATA+TGG + chr3_3:74805673-74805692 None:intergenic 25.0%
! AAAAGTTTCAATAAGAATCC+TGG - chr3_3:74804565-74804584 Msa0472390:CDS 25.0%
!!! TGAAGTTATTGATAATGCAA+AGG - chr3_3:74804924-74804943 Msa0472390:intron 25.0%
! CATGAAATAAGGAATGATTT+AGG + chr3_3:74805093-74805112 None:intergenic 25.0%
! AGGATACTATAATGATATCT+TGG - chr3_3:74805564-74805583 Msa0472390:intron 25.0%
!! AATTTGTTTGACCATAGATA+TGG + chr3_3:74805673-74805692 None:intergenic 25.0%
TGAGTTCATTGTAAAAGATG+AGG - chr3_3:74804537-74804556 Msa0472390:CDS 30.0%
CATGAAAATGCATTCTTACA+AGG + chr3_3:74804603-74804622 None:intergenic 30.0%
TAACAACGCAGTTAAGTTAA+TGG + chr3_3:74804808-74804827 None:intergenic 30.0%
TTAACTGCGTTGTTAATTGT+AGG - chr3_3:74804813-74804832 Msa0472390:CDS 30.0%
TAACTGCGTTGTTAATTGTA+GGG - chr3_3:74804814-74804833 Msa0472390:CDS 30.0%
TTTGTGCTAGAAACATTTGA+AGG - chr3_3:74805045-74805064 Msa0472390:CDS 30.0%
! AATCATTCCTTATTTCATGC+AGG - chr3_3:74805094-74805113 Msa0472390:intron 30.0%
AGTTGGTTAACATCAAAAGT+TGG + chr3_3:74805206-74805225 None:intergenic 30.0%
AATGATATCTTGGCAAATAG+AGG - chr3_3:74805574-74805593 Msa0472390:intron 30.0%
!! AGCATTTTGATGAACTTTTC+TGG + chr3_3:74805644-74805663 None:intergenic 30.0%
GAAAAGTTCATCAAAATGCT+AGG - chr3_3:74805644-74805663 Msa0472390:CDS 30.0%
AAACAAATTTGCAGATGCAA+TGG - chr3_3:74805684-74805703 Msa0472390:CDS 30.0%
TGAGTTCATTGTAAAAGATG+AGG - chr3_3:74804537-74804556 Msa0472390:CDS 30.0%
CATGAAAATGCATTCTTACA+AGG + chr3_3:74804603-74804622 None:intergenic 30.0%
TAACAACGCAGTTAAGTTAA+TGG + chr3_3:74804808-74804827 None:intergenic 30.0%
TTAACTGCGTTGTTAATTGT+AGG - chr3_3:74804813-74804832 Msa0472390:CDS 30.0%
TAACTGCGTTGTTAATTGTA+GGG - chr3_3:74804814-74804833 Msa0472390:CDS 30.0%
TTTGTGCTAGAAACATTTGA+AGG - chr3_3:74805045-74805064 Msa0472390:CDS 30.0%
! AATCATTCCTTATTTCATGC+AGG - chr3_3:74805094-74805113 Msa0472390:intron 30.0%
AGTTGGTTAACATCAAAAGT+TGG + chr3_3:74805206-74805225 None:intergenic 30.0%
AATGATATCTTGGCAAATAG+AGG - chr3_3:74805574-74805593 Msa0472390:intron 30.0%
!! AGCATTTTGATGAACTTTTC+TGG + chr3_3:74805644-74805663 None:intergenic 30.0%
GAAAAGTTCATCAAAATGCT+AGG - chr3_3:74805644-74805663 Msa0472390:CDS 30.0%
AAACAAATTTGCAGATGCAA+TGG - chr3_3:74805684-74805703 Msa0472390:CDS 30.0%
!! GGGTTTTATACCTATTCATG+TGG - chr3_3:74804508-74804527 Msa0472390:CDS 35.0%
TTATACCTATTCATGTGGCA+TGG - chr3_3:74804513-74804532 Msa0472390:CDS 35.0%
GTGCAACATTTCGTTACAAA+TGG + chr3_3:74804658-74804677 None:intergenic 35.0%
AACTGCGTTGTTAATTGTAG+GGG - chr3_3:74804815-74804834 Msa0472390:CDS 35.0%
AAACTCGAAGAAGAATGCAA+AGG - chr3_3:74804949-74804968 Msa0472390:CDS 35.0%
TTAACATCAAAAGTTGGAGG+AGG + chr3_3:74805200-74805219 None:intergenic 35.0%
TGGTTAACATCAAAAGTTGG+AGG + chr3_3:74805203-74805222 None:intergenic 35.0%
ACTCAACTCTTTGCAAAGAA+GGG - chr3_3:74805227-74805246 Msa0472390:CDS 35.0%
!! GCATGTATTTTTGTGTATGC+AGG - chr3_3:74805349-74805368 Msa0472390:CDS 35.0%
GTATAATCTCTTGCTGAAAG+CGG + chr3_3:74805404-74805423 None:intergenic 35.0%
TTCAATAGTGCAGCATATGA+GGG + chr3_3:74805466-74805485 None:intergenic 35.0%
!!! TTTTGGTTTGTGTTTCCTTG+TGG + chr3_3:74805499-74805518 None:intergenic 35.0%
AGGAAACACAAACCAAAACT+TGG - chr3_3:74805501-74805520 Msa0472390:intron 35.0%
AAACACAAACCAAAACTTGG+TGG - chr3_3:74805504-74805523 Msa0472390:intron 35.0%
ATGCTAGGAATCCATATCTA+TGG - chr3_3:74805659-74805678 Msa0472390:CDS 35.0%
AGAGATTAGGACAAATTGCA+GGG - chr3_3:74805747-74805766 Msa0472390:CDS 35.0%
!! GGGTTTTATACCTATTCATG+TGG - chr3_3:74804508-74804527 Msa0472390:CDS 35.0%
TTATACCTATTCATGTGGCA+TGG - chr3_3:74804513-74804532 Msa0472390:CDS 35.0%
GTGCAACATTTCGTTACAAA+TGG + chr3_3:74804658-74804677 None:intergenic 35.0%
AACTGCGTTGTTAATTGTAG+GGG - chr3_3:74804815-74804834 Msa0472390:CDS 35.0%
AAACTCGAAGAAGAATGCAA+AGG - chr3_3:74804949-74804968 Msa0472390:CDS 35.0%
TTAACATCAAAAGTTGGAGG+AGG + chr3_3:74805200-74805219 None:intergenic 35.0%
TGGTTAACATCAAAAGTTGG+AGG + chr3_3:74805203-74805222 None:intergenic 35.0%
ACTCAACTCTTTGCAAAGAA+GGG - chr3_3:74805227-74805246 Msa0472390:CDS 35.0%
!! GCATGTATTTTTGTGTATGC+AGG - chr3_3:74805349-74805368 Msa0472390:CDS 35.0%
GTATAATCTCTTGCTGAAAG+CGG + chr3_3:74805404-74805423 None:intergenic 35.0%
TTCAATAGTGCAGCATATGA+GGG + chr3_3:74805466-74805485 None:intergenic 35.0%
!!! TTTTGGTTTGTGTTTCCTTG+TGG + chr3_3:74805499-74805518 None:intergenic 35.0%
AGGAAACACAAACCAAAACT+TGG - chr3_3:74805501-74805520 Msa0472390:intron 35.0%
AAACACAAACCAAAACTTGG+TGG - chr3_3:74805504-74805523 Msa0472390:intron 35.0%
ATGCTAGGAATCCATATCTA+TGG - chr3_3:74805659-74805678 Msa0472390:CDS 35.0%
AGAGATTAGGACAAATTGCA+GGG - chr3_3:74805747-74805766 Msa0472390:CDS 35.0%
! ACTACTAAGCATTGTGTGCA+AGG + chr3_3:74804680-74804699 None:intergenic 40.0%
TCTTTCTCTGCAGTGTTTGA+GGG + chr3_3:74804871-74804890 None:intergenic 40.0%
CCAATAAACCAAGTCTCAGA+GGG - chr3_3:74804899-74804918 Msa0472390:intron 40.0%
ACATAGTTGCATTTGCAGCA+AGG - chr3_3:74804989-74805008 Msa0472390:CDS 40.0%
CATAGTTGCATTTGCAGCAA+GGG - chr3_3:74804990-74805009 Msa0472390:CDS 40.0%
! ATTCCTTATTTCATGCAGGC+TGG - chr3_3:74805098-74805117 Msa0472390:intron 40.0%
TTGCAAAGAGTTGAGTGAGT+TGG + chr3_3:74805223-74805242 None:intergenic 40.0%
CACTCAACTCTTTGCAAAGA+AGG - chr3_3:74805226-74805245 Msa0472390:CDS 40.0%
CTCAACTCTTTGCAAAGAAG+GGG - chr3_3:74805228-74805247 Msa0472390:CDS 40.0%
GGGGTTAACACAAGATGAAA+TGG - chr3_3:74805247-74805266 Msa0472390:CDS 40.0%
GCATATGAGGGATCTAAACT+TGG + chr3_3:74805454-74805473 None:intergenic 40.0%
CTTCAATAGTGCAGCATATG+AGG + chr3_3:74805467-74805486 None:intergenic 40.0%
CATATGCTGCACTATTGAAG+AGG - chr3_3:74805467-74805486 Msa0472390:intron 40.0%
CAGACTCTCTTAACTAACAC+TGG - chr3_3:74805613-74805632 Msa0472390:CDS 40.0%
GAGAGATTAGGACAAATTGC+AGG - chr3_3:74805746-74805765 Msa0472390:CDS 40.0%
! ACTACTAAGCATTGTGTGCA+AGG + chr3_3:74804680-74804699 None:intergenic 40.0%
TCTTTCTCTGCAGTGTTTGA+GGG + chr3_3:74804871-74804890 None:intergenic 40.0%
CCAATAAACCAAGTCTCAGA+GGG - chr3_3:74804899-74804918 Msa0472390:intron 40.0%
ACATAGTTGCATTTGCAGCA+AGG - chr3_3:74804989-74805008 Msa0472390:CDS 40.0%
CATAGTTGCATTTGCAGCAA+GGG - chr3_3:74804990-74805009 Msa0472390:CDS 40.0%
! ATTCCTTATTTCATGCAGGC+TGG - chr3_3:74805098-74805117 Msa0472390:intron 40.0%
TTGCAAAGAGTTGAGTGAGT+TGG + chr3_3:74805223-74805242 None:intergenic 40.0%
CACTCAACTCTTTGCAAAGA+AGG - chr3_3:74805226-74805245 Msa0472390:CDS 40.0%
CTCAACTCTTTGCAAAGAAG+GGG - chr3_3:74805228-74805247 Msa0472390:CDS 40.0%
GGGGTTAACACAAGATGAAA+TGG - chr3_3:74805247-74805266 Msa0472390:CDS 40.0%
GCATATGAGGGATCTAAACT+TGG + chr3_3:74805454-74805473 None:intergenic 40.0%
CTTCAATAGTGCAGCATATG+AGG + chr3_3:74805467-74805486 None:intergenic 40.0%
CATATGCTGCACTATTGAAG+AGG - chr3_3:74805467-74805486 Msa0472390:intron 40.0%
CAGACTCTCTTAACTAACAC+TGG - chr3_3:74805613-74805632 Msa0472390:CDS 40.0%
GAGAGATTAGGACAAATTGC+AGG - chr3_3:74805746-74805765 Msa0472390:CDS 40.0%
AAGAATCCTGGAATTGCTGC+TGG - chr3_3:74804577-74804596 Msa0472390:CDS 45.0%
GTCTTTCTCTGCAGTGTTTG+AGG + chr3_3:74804872-74804891 None:intergenic 45.0%
! CTGAGACTTGGTTTATTGGC+TGG + chr3_3:74804898-74804917 None:intergenic 45.0%
GCCAATAAACCAAGTCTCAG+AGG - chr3_3:74804898-74804917 Msa0472390:intron 45.0%
!! CCCTCTGAGACTTGGTTTAT+TGG + chr3_3:74804902-74804921 None:intergenic 45.0%
!! ACTTCAAACCCTCTGAGACT+TGG + chr3_3:74804910-74804929 None:intergenic 45.0%
ATTTGCAGCAAGGGATAGTG+TGG - chr3_3:74804999-74805018 Msa0472390:CDS 45.0%
CTTATTTCATGCAGGCTGGA+GGG - chr3_3:74805102-74805121 Msa0472390:intron 45.0%
TTCCTGCAGGAAGAAGAGAT+GGG - chr3_3:74805138-74805157 Msa0472390:intron 45.0%
GATGAAATGGTCACTCTCTC+TGG - chr3_3:74805260-74805279 Msa0472390:CDS 45.0%
AAATGGTCACTCTCTCTGGT+AGG - chr3_3:74805264-74805283 Msa0472390:CDS 45.0%
AGGGATCTAAACTTGGATCC+TGG + chr3_3:74805447-74805466 None:intergenic 45.0%
TTGAAGAGGCAATGTCCACA+AGG - chr3_3:74805481-74805500 Msa0472390:intron 45.0%
! CCATTGGAACCACCAAGTTT+TGG + chr3_3:74805516-74805535 None:intergenic 45.0%
! CCAAAACTTGGTGGTTCCAA+TGG - chr3_3:74805513-74805532 Msa0472390:intron 45.0%
ATCCTACATCTGCAGTTCCA+GGG + chr3_3:74805549-74805568 None:intergenic 45.0%
TATCCTACATCTGCAGTTCC+AGG + chr3_3:74805550-74805569 None:intergenic 45.0%
TGCAGATGCAATGGTGAAGA+TGG - chr3_3:74805693-74805712 Msa0472390:CDS 45.0%
GCAGATGCAATGGTGAAGAT+GGG - chr3_3:74805694-74805713 Msa0472390:CDS 45.0%
AGTGTCTTGACAGGTAATGC+TGG - chr3_3:74805724-74805743 Msa0472390:CDS 45.0%
CAGGTAATGCTGGAGAGATT+AGG - chr3_3:74805734-74805753 Msa0472390:CDS 45.0%
GATTAGGACAAATTGCAGGG+TGG - chr3_3:74805750-74805769 Msa0472390:CDS 45.0%
ACAAATTGCAGGGTGGTCAA+GGG - chr3_3:74805757-74805776 Msa0472390:CDS 45.0%
AAGAATCCTGGAATTGCTGC+TGG - chr3_3:74804577-74804596 Msa0472390:CDS 45.0%
GTCTTTCTCTGCAGTGTTTG+AGG + chr3_3:74804872-74804891 None:intergenic 45.0%
! CTGAGACTTGGTTTATTGGC+TGG + chr3_3:74804898-74804917 None:intergenic 45.0%
GCCAATAAACCAAGTCTCAG+AGG - chr3_3:74804898-74804917 Msa0472390:intron 45.0%
!! CCCTCTGAGACTTGGTTTAT+TGG + chr3_3:74804902-74804921 None:intergenic 45.0%
!! ACTTCAAACCCTCTGAGACT+TGG + chr3_3:74804910-74804929 None:intergenic 45.0%
ATTTGCAGCAAGGGATAGTG+TGG - chr3_3:74804999-74805018 Msa0472390:CDS 45.0%
CTTATTTCATGCAGGCTGGA+GGG - chr3_3:74805102-74805121 Msa0472390:intron 45.0%
TTCCTGCAGGAAGAAGAGAT+GGG - chr3_3:74805138-74805157 Msa0472390:intron 45.0%
GATGAAATGGTCACTCTCTC+TGG - chr3_3:74805260-74805279 Msa0472390:CDS 45.0%
AAATGGTCACTCTCTCTGGT+AGG - chr3_3:74805264-74805283 Msa0472390:CDS 45.0%
AGGGATCTAAACTTGGATCC+TGG + chr3_3:74805447-74805466 None:intergenic 45.0%
TTGAAGAGGCAATGTCCACA+AGG - chr3_3:74805481-74805500 Msa0472390:intron 45.0%
! CCATTGGAACCACCAAGTTT+TGG + chr3_3:74805516-74805535 None:intergenic 45.0%
! CCAAAACTTGGTGGTTCCAA+TGG - chr3_3:74805513-74805532 Msa0472390:intron 45.0%
ATCCTACATCTGCAGTTCCA+GGG + chr3_3:74805549-74805568 None:intergenic 45.0%
TATCCTACATCTGCAGTTCC+AGG + chr3_3:74805550-74805569 None:intergenic 45.0%
TGCAGATGCAATGGTGAAGA+TGG - chr3_3:74805693-74805712 Msa0472390:CDS 45.0%
GCAGATGCAATGGTGAAGAT+GGG - chr3_3:74805694-74805713 Msa0472390:CDS 45.0%
AGTGTCTTGACAGGTAATGC+TGG - chr3_3:74805724-74805743 Msa0472390:CDS 45.0%
CAGGTAATGCTGGAGAGATT+AGG - chr3_3:74805734-74805753 Msa0472390:CDS 45.0%
GATTAGGACAAATTGCAGGG+TGG - chr3_3:74805750-74805769 Msa0472390:CDS 45.0%
ACAAATTGCAGGGTGGTCAA+GGG - chr3_3:74805757-74805776 Msa0472390:CDS 45.0%
!! CAGAAGTGCTCATTCTCAGC+TGG - chr3_3:74804480-74804499 Msa0472390:CDS 50.0%
AAGTGCTCATTCTCAGCTGG+AGG - chr3_3:74804483-74804502 Msa0472390:CDS 50.0%
CTCATTCTCAGCTGGAGGTT+GGG - chr3_3:74804488-74804507 Msa0472390:CDS 50.0%
CTCAGCCATGCCACATGAAT+AGG + chr3_3:74804521-74804540 None:intergenic 50.0%
! ATTGTAGGGGTGTGACGCAT+CGG - chr3_3:74804828-74804847 Msa0472390:intron 50.0%
AGCAAGGGATAGTGTGGAGT+TGG - chr3_3:74805005-74805024 Msa0472390:CDS 50.0%
CCTCCAGCCTGCATGAAATA+AGG + chr3_3:74805104-74805123 None:intergenic 50.0%
! CCTTATTTCATGCAGGCTGG+AGG - chr3_3:74805101-74805120 Msa0472390:intron 50.0%
CTTGGCTATGATGTTCCTGC+AGG - chr3_3:74805125-74805144 Msa0472390:intron 50.0%
GTTCCTGCAGGAAGAAGAGA+TGG - chr3_3:74805137-74805156 Msa0472390:intron 50.0%
TTCCCATCTCTTCTTCCTGC+AGG + chr3_3:74805143-74805162 None:intergenic 50.0%
CTTCAGCAGCACTTCAATCC+AGG - chr3_3:74805426-74805445 Msa0472390:intron 50.0%
GGACAGATCAGTGTCTTGAC+AGG - chr3_3:74805715-74805734 Msa0472390:CDS 50.0%
GACAAATTGCAGGGTGGTCA+AGG - chr3_3:74805756-74805775 Msa0472390:CDS 50.0%
!! CAGAAGTGCTCATTCTCAGC+TGG - chr3_3:74804480-74804499 Msa0472390:CDS 50.0%
AAGTGCTCATTCTCAGCTGG+AGG - chr3_3:74804483-74804502 Msa0472390:CDS 50.0%
CTCATTCTCAGCTGGAGGTT+GGG - chr3_3:74804488-74804507 Msa0472390:CDS 50.0%
CTCAGCCATGCCACATGAAT+AGG + chr3_3:74804521-74804540 None:intergenic 50.0%
! ATTGTAGGGGTGTGACGCAT+CGG - chr3_3:74804828-74804847 Msa0472390:intron 50.0%
AGCAAGGGATAGTGTGGAGT+TGG - chr3_3:74805005-74805024 Msa0472390:CDS 50.0%
CCTCCAGCCTGCATGAAATA+AGG + chr3_3:74805104-74805123 None:intergenic 50.0%
! CCTTATTTCATGCAGGCTGG+AGG - chr3_3:74805101-74805120 Msa0472390:intron 50.0%
CTTGGCTATGATGTTCCTGC+AGG - chr3_3:74805125-74805144 Msa0472390:intron 50.0%
GTTCCTGCAGGAAGAAGAGA+TGG - chr3_3:74805137-74805156 Msa0472390:intron 50.0%
TTCCCATCTCTTCTTCCTGC+AGG + chr3_3:74805143-74805162 None:intergenic 50.0%
CTTCAGCAGCACTTCAATCC+AGG - chr3_3:74805426-74805445 Msa0472390:intron 50.0%
GGACAGATCAGTGTCTTGAC+AGG - chr3_3:74805715-74805734 Msa0472390:CDS 50.0%
GACAAATTGCAGGGTGGTCA+AGG - chr3_3:74805756-74805775 Msa0472390:CDS 50.0%
GCTCATTCTCAGCTGGAGGT+TGG - chr3_3:74804487-74804506 Msa0472390:CDS 55.0%
ACAAGGCCAGCAGCAATTCC+AGG + chr3_3:74804586-74804605 None:intergenic 55.0%
TATGCAGGCGCACACACCAT+TGG - chr3_3:74805364-74805383 Msa0472390:intron 55.0%
GGAGCAATGAGAGCGACCAA+TGG + chr3_3:74805383-74805402 None:intergenic 55.0%
CTGCAGTTCCAGGGCTAGAA+GGG + chr3_3:74805540-74805559 None:intergenic 55.0%
TCTGCAGTTCCAGGGCTAGA+AGG + chr3_3:74805541-74805560 None:intergenic 55.0%
AGCCCTGGAACTGCAGATGT+AGG - chr3_3:74805544-74805563 Msa0472390:intron 55.0%
GCTCATTCTCAGCTGGAGGT+TGG - chr3_3:74804487-74804506 Msa0472390:CDS 55.0%
ACAAGGCCAGCAGCAATTCC+AGG + chr3_3:74804586-74804605 None:intergenic 55.0%
TATGCAGGCGCACACACCAT+TGG - chr3_3:74805364-74805383 Msa0472390:intron 55.0%
GGAGCAATGAGAGCGACCAA+TGG + chr3_3:74805383-74805402 None:intergenic 55.0%
CTGCAGTTCCAGGGCTAGAA+GGG + chr3_3:74805540-74805559 None:intergenic 55.0%
TCTGCAGTTCCAGGGCTAGA+AGG + chr3_3:74805541-74805560 None:intergenic 55.0%
AGCCCTGGAACTGCAGATGT+AGG - chr3_3:74805544-74805563 Msa0472390:intron 55.0%
TTCATGCAGGCTGGAGGGCT+TGG - chr3_3:74805107-74805126 Msa0472390:intron 60.0%
CCAGGGCTAGAAGGGTCCAT+TGG + chr3_3:74805532-74805551 None:intergenic 60.0%
CCAATGGACCCTTCTAGCCC+TGG - chr3_3:74805529-74805548 Msa0472390:intron 60.0%
TTCATGCAGGCTGGAGGGCT+TGG - chr3_3:74805107-74805126 Msa0472390:intron 60.0%
CCAGGGCTAGAAGGGTCCAT+TGG + chr3_3:74805532-74805551 None:intergenic 60.0%
CCAATGGACCCTTCTAGCCC+TGG - chr3_3:74805529-74805548 Msa0472390:intron 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 74804424 74805783 74804424 ID=Msa0472390;Name=Msa0472390
chr3_3 mRNA 74804424 74805783 74804424 ID=Msa0472390-mRNA-1;Parent=Msa0472390;Name=Msa0472390-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.66|0.5|1|1|1|4|0|316
chr3_3 exon 74805604 74805783 74805604 ID=Msa0472390-mRNA-1:exon:19233;Parent=Msa0472390-mRNA-1
chr3_3 exon 74805181 74805372 74805181 ID=Msa0472390-mRNA-1:exon:19232;Parent=Msa0472390-mRNA-1
chr3_3 exon 74804926 74805091 74804926 ID=Msa0472390-mRNA-1:exon:19231;Parent=Msa0472390-mRNA-1
chr3_3 exon 74804424 74804836 74804424 ID=Msa0472390-mRNA-1:exon:19230;Parent=Msa0472390-mRNA-1
chr3_3 CDS 74805604 74805783 74805604 ID=Msa0472390-mRNA-1:cds;Parent=Msa0472390-mRNA-1
chr3_3 CDS 74805181 74805372 74805181 ID=Msa0472390-mRNA-1:cds;Parent=Msa0472390-mRNA-1
chr3_3 CDS 74804926 74805091 74804926 ID=Msa0472390-mRNA-1:cds;Parent=Msa0472390-mRNA-1
chr3_3 CDS 74804424 74804836 74804424 ID=Msa0472390-mRNA-1:cds;Parent=Msa0472390-mRNA-1
Gene Sequence

>Msa0472390

ATGAATCCGAAAAAACTTAATTATGCAATTATAGTTTTGGTCGTATATTTTTTGAACAGAAGTGCTCATTCTCAGCTGGAGGTTGGGTTTTATACCTATTCATGTGGCATGGCTGAGTTCATTGTAAAAGATGAGGTCAGAAAAAGTTTCAATAAGAATCCTGGAATTGCTGCTGGCCTTGGGTGTGACGCATCGGTACTTCTCGATTCTACTCCCTCAAACACTGCAGAGAAAGACTCTCCAGCCAATAAACCAAGTCTCAGAGGGTTTGAAGTTATTGATAATGCAAAGGCTAAACTCGAAGAAGAATGCAAAGGAATTGTTTCATGTGCTGACATAGTTGCATTTGCAGCAAGGGATAGTGTGGAGTTGGCTGGAGGGCTTGGCTATGATGTTCCTGCAGGAAGAAGAGATGGGAAAATATCACTAGCTTCAGATACAAGAACAGAATTACCTCCTCCAACTTTTGATGTTAACCAACTCACTCAACTCTTTGCAAAGAAGGGGTTAACACAAGATGAAATGGTCACTCTCTCTGGCGCACACACCATTGGTCGCTCTCATTGCTCCGCTTTCAGCAAGAGATTATACAACTTCAGCAGCACTTCAATCCAGGATCCAAGTTTAGATCCCTCATATGCTGCACTATTGAAGAGGCAATGTCCACAAGGAAACACAAACCAAAACTTGGTGGTTCCAATGGACCCTTCTAGCCCTGGAACTGCAGATGTAGGATACTATAATGATATCTTGGCAAATAGAGGCTTGTTCACTTCTGATCAGACTCTCTTAACTAACACTGGAACAGCCAGAAAAGTTCATCAAAATGCTAGGAATCCATATCTATGGTCAAACAAATTTGCAGATGCAATGGTGAAGATGGGACAGATCAGTGTCTTGACAGGTAATGCTGGAGAGATTAGGACAAATTGCAGGGTGGTCAAGGGCTAG

Protein sequence

>Msa0472390

MNPKKLNYAIIVLVVYFLNRSAHSQLEVGFYTYSCGMAEFIVKDEVRKSFNKNPGIAAGLGCDASVLLDSTPSNTAEKDSPANKPSLRGFEVIDNAKAKLEEECKGIVSCADIVAFAARDSVELAGGLGYDVPAGRRDGKISLASDTRTELPPPTFDVNQLTQLFAKKGLTQDEMVTLSGAHTIGRSHCSAFSKRLYNFSSTSIQDPSLDPSYAALLKRQCPQGNTNQNLVVPMDPSSPGTADVGYYNDILANRGLFTSDQTLLTNTGTARKVHQNARNPYLWSNKFADAMVKMGQISVLTGNAGEIRTNCRVVKG*