AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1138110

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1138110 MtrunA17_Chr7g0220011 85.294 204 7 1 1 181 1 204 3.76e-124 354
Msa1138110 MtrunA17_Chr7g0220011 91.892 37 3 0 183 219 268 304 3.48e-15 73.2
Msa1138110 MtrunA17_Chr6g0455481 46.535 303 76 5 1 217 4 306 1.50e-85 256
Msa1138110 MtrunA17_Chr7g0220001 58.824 204 61 1 1 181 3 206 6.68e-83 249
Msa1138110 MtrunA17_Chr7g0219991 53.595 153 46 2 1 128 1 153 1.54e-49 165
Msa1138110 MtrunA17_Chr7g0219991 63.158 57 21 0 125 181 245 301 1.06e-17 80.5
Msa1138110 MtrunA17_Chr1g0184161 37.054 224 114 3 1 198 1 223 1.21e-45 154
Msa1138110 MtrunA17_Chr1g0184151 35.577 208 107 3 1 182 1 207 1.45e-42 146
Msa1138110 MtrunA17_Chr1g0184101 35.437 206 101 5 5 181 4 206 2.22e-36 130
Msa1138110 MtrunA17_Chr1g0184111 30.000 290 115 5 15 216 13 302 3.34e-36 130
Msa1138110 MtrunA17_Chr1g0184121 30.000 290 115 5 15 216 13 302 3.21e-35 127
Msa1138110 MtrunA17_Chr3g0128001 35.294 204 108 4 1 181 1 203 4.55e-35 127
Msa1138110 MtrunA17_Chr8g0345831 33.824 204 104 6 5 181 11 210 1.21e-25 102
Msa1138110 MtrunA17_Chr7g0250511 31.658 199 102 6 14 181 23 218 1.80e-24 99.0
Msa1138110 MtrunA17_Chr1g0179801 30.374 214 109 7 5 181 30 240 8.77e-23 94.7
Msa1138110 MtrunA17_Chr1g0187821 33.333 168 87 5 39 181 67 234 1.10e-22 94.4
Msa1138110 MtrunA17_Chr4g0055591 29.348 184 102 4 39 198 61 240 1.65e-21 90.9
Msa1138110 MtrunA17_Chr7g0225881 31.472 197 106 7 14 182 37 232 2.05e-21 90.9
Msa1138110 MtrunA17_Chr1g0187811 31.548 168 90 4 39 181 188 355 3.97e-21 90.9
Msa1138110 MtrunA17_Chr7g0235951 31.844 179 96 6 29 181 56 234 5.62e-20 87.0
Msa1138110 MtrunA17_Chr8g0335411 29.825 171 89 5 39 181 67 234 1.18e-19 85.9
Msa1138110 MtrunA17_Chr1g0187831 30.357 168 92 5 39 181 70 237 1.66e-19 85.9
Msa1138110 MtrunA17_Chr3g0113641 27.363 201 112 6 14 181 24 223 2.55e-19 85.1
Msa1138110 MtrunA17_Chr1g0184241 30.144 209 122 6 14 198 43 251 3.47e-19 84.7
Msa1138110 MtrunA17_Chr2g0311701 32.804 189 96 7 39 202 69 251 3.58e-19 84.7
Msa1138110 MtrunA17_Chr7g0242551 30.918 207 102 8 14 181 24 228 3.64e-19 84.7
Msa1138110 MtrunA17_Chr4g0006371 28.372 215 106 7 14 181 23 236 5.15e-19 84.3
Msa1138110 MtrunA17_Chr5g0424201 28.283 198 110 5 14 181 18 213 9.59e-19 83.2
Msa1138110 MtrunA17_Chr3g0125201 29.341 167 94 5 39 181 3 169 9.81e-19 82.8
Msa1138110 MtrunA17_Chr8g0354241 31.606 193 93 7 39 198 68 254 1.03e-18 83.6
Msa1138110 MtrunA17_Chr8g0354261 32.124 193 92 8 39 198 68 254 1.07e-18 83.2
Msa1138110 MtrunA17_Chr2g0311711 33.333 168 87 6 39 181 67 234 1.08e-18 83.2
Msa1138110 MtrunA17_Chr5g0424211 26.131 199 117 4 13 181 15 213 1.31e-18 82.8
Msa1138110 MtrunA17_Chr5g0412671 27.358 212 122 4 19 198 18 229 1.62e-18 82.4
Msa1138110 MtrunA17_Chr3g0114871 27.411 197 115 4 13 181 15 211 3.02e-18 80.9
Msa1138110 MtrunA17_Chr8g0336761 32.164 171 90 6 38 182 59 229 5.38e-18 81.3
Msa1138110 MtrunA17_Chr8g0348081 32.386 176 81 6 38 181 59 228 6.43e-18 80.9
Msa1138110 MtrunA17_Chr6g0472861 28.358 201 112 7 14 182 37 237 6.56e-18 81.3
Msa1138110 MtrunA17_Chr7g0265221 27.442 215 111 6 11 181 34 247 7.02e-18 81.3
Msa1138110 MtrunA17_Chr4g0066991 31.746 189 99 9 29 202 56 229 7.10e-18 80.9
Msa1138110 MtrunA17_Chr1g0162351 29.665 209 99 7 19 181 50 256 8.65e-18 80.9
Msa1138110 MtrunA17_Chr2g0311741 32.544 169 87 7 39 181 27 194 1.38e-17 79.7
Msa1138110 MtrunA17_Chr7g0247991 29.577 213 118 7 14 200 42 248 1.50e-17 80.1
Msa1138110 MtrunA17_Chr4g0011311 30.811 185 95 8 29 181 51 234 1.76e-17 79.3
Msa1138110 MtrunA17_Chr5g0437181 25.628 199 116 6 15 181 24 222 1.77e-17 79.7
Msa1138110 MtrunA17_Chr8g0336851 30.994 171 92 6 38 182 59 229 2.65e-17 79.3
Msa1138110 MtrunA17_Chr4g0045451 29.469 207 100 8 19 181 7 211 2.66e-17 79.3
Msa1138110 MtrunA17_Chr7g0239101 31.953 169 88 5 39 181 55 222 2.68e-17 79.3
Msa1138110 MtrunA17_Chr3g0102041 25.381 197 119 4 13 181 13 209 2.80e-17 79.3
Msa1138110 MtrunA17_Chr8g0371921 25.381 197 119 4 13 181 13 209 5.58e-17 78.6
Msa1138110 MtrunA17_Chr4g0050031 30.994 171 90 6 39 181 62 232 6.07e-17 78.2
Msa1138110 MtrunA17_Chr1g0184141 32.000 125 62 1 78 179 4 128 8.05e-17 73.9
Msa1138110 MtrunA17_Chr8g0364471 29.762 168 93 5 39 181 67 234 9.71e-17 77.8
Msa1138110 MtrunA17_Chr2g0311761 27.803 223 126 7 16 210 44 259 1.46e-16 77.4
Msa1138110 MtrunA17_Chr2g0311681 32.258 186 101 6 39 199 63 248 1.52e-16 77.0
Msa1138110 MtrunA17_Chr5g0412651 28.718 195 107 4 19 181 18 212 1.55e-16 77.0
Msa1138110 MtrunA17_Chr8g0336861 30.939 181 86 7 35 182 56 230 1.63e-16 77.0
Msa1138110 MtrunA17_Chr5g0412681 30.769 182 96 6 27 181 21 199 1.69e-16 77.0
Msa1138110 MtrunA17_Chr8g0375601 29.851 201 106 9 14 181 20 218 1.78e-16 77.0
Msa1138110 MtrunA17_Chr8g0371931 24.752 202 124 4 8 181 8 209 1.81e-16 77.0
Msa1138110 MtrunA17_Chr3g0109041 29.146 199 108 6 14 181 19 215 2.00e-16 76.6
Msa1138110 MtrunA17_Chr8g0336751 31.053 190 98 7 38 198 93 278 2.63e-16 76.6
Msa1138110 MtrunA17_Chr8g0362741 34.783 138 69 6 64 181 83 219 2.74e-16 75.5
Msa1138110 MtrunA17_Chr7g0239121 29.032 186 105 5 39 198 51 235 3.88e-16 75.9
Msa1138110 MtrunA17_Chr5g0405411 23.858 197 122 4 13 181 13 209 5.98e-16 75.5
Msa1138110 MtrunA17_Chr8g0336781 32.184 174 83 7 39 181 95 264 8.38e-16 75.1
Msa1138110 MtrunA17_Chr1g0167911 28.125 192 114 6 14 181 29 220 9.22e-16 74.7
Msa1138110 MtrunA17_Chr2g0311831 30.000 210 119 9 16 198 44 252 1.10e-15 74.7
Msa1138110 MtrunA17_Chr2g0285931 33.333 168 82 6 39 180 28 191 1.18e-15 74.3
Msa1138110 MtrunA17_Chr7g0236011 29.534 193 97 7 39 202 67 249 1.65e-15 74.3
Msa1138110 MtrunA17_Chr5g0398291 24.155 207 118 5 14 181 17 223 1.81e-15 73.9
Msa1138110 MtrunA17_Chr7g0232161 30.052 193 107 7 16 181 36 227 1.87e-15 73.9
Msa1138110 MtrunA17_Chr3g0126741 30.994 171 90 6 39 181 59 229 2.17e-15 73.9
Msa1138110 MtrunA17_Chr2g0311691 30.732 205 116 7 20 198 43 247 3.27e-15 73.6
Msa1138110 MtrunA17_Chr4g0045411 26.866 201 106 7 20 181 12 210 3.46e-15 73.2
Msa1138110 MtrunA17_Chr8g0375671 26.633 199 113 6 14 181 27 223 4.45e-15 73.2
Msa1138110 MtrunA17_Chr2g0311921 29.949 197 109 7 29 198 44 238 5.54e-15 72.8
Msa1138110 MtrunA17_Chr8g0336631 29.787 188 105 7 38 198 59 246 5.67e-15 72.8
Msa1138110 MtrunA17_Chr4g0045441 28.641 206 103 7 19 181 7 211 5.83e-15 72.4
Msa1138110 MtrunA17_Chr1g0167931 29.557 203 93 7 14 198 29 199 6.62e-15 72.0
Msa1138110 MtrunA17_Chr8g0336831 29.319 191 98 5 38 196 59 244 1.60e-14 70.5
Msa1138110 MtrunA17_Chr7g0239111 28.283 198 111 7 39 210 55 247 1.96e-14 71.2
Msa1138110 MtrunA17_Chr1g0167951 28.230 209 125 7 14 198 29 236 2.25e-14 70.9
Msa1138110 MtrunA17_Chr1g0162361 26.904 197 110 4 19 181 7 203 3.57e-14 70.5
Msa1138110 MtrunA17_Chr3g0114861 27.461 193 112 3 16 181 17 208 5.10e-14 69.7
Msa1138110 MtrunA17_Chr3g0087031 28.877 187 104 6 39 198 60 244 6.65e-14 69.7
Msa1138110 MtrunA17_Chr5g0423191 24.615 195 114 5 16 181 24 214 8.59e-14 69.3
Msa1138110 MtrunA17_Chr8g0365241 25.103 243 136 9 14 217 32 267 1.09e-13 68.9
Msa1138110 MtrunA17_Chr5g0423251 22.680 194 125 4 13 181 21 214 4.25e-13 67.4
Msa1138110 MtrunA17_Chr3g0145171 29.143 175 88 8 39 181 52 222 4.81e-13 67.0
Msa1138110 MtrunA17_Chr8g0375701 25.397 189 111 5 37 198 53 238 4.92e-13 67.0
Msa1138110 MtrunA17_Chr3g0121141 26.994 163 100 4 38 181 6 168 7.05e-13 66.2
Msa1138110 MtrunA17_Chr8g0375571 26.131 199 114 6 14 181 20 216 8.19e-13 66.6
Msa1138110 MtrunA17_Chr7g0266651 27.979 193 112 10 15 181 34 225 1.43e-12 65.9
Msa1138110 MtrunA17_Chr5g0426891 26.768 198 112 6 14 181 14 208 1.87e-12 65.5
Msa1138110 MtrunA17_Chr5g0420941 24.201 219 138 6 14 207 20 235 2.32e-12 65.1
Msa1138110 MtrunA17_Chr2g0289341 29.518 166 93 6 39 181 4 168 3.02e-12 64.7
Msa1138110 MtrunA17_Chr7g0239821 23.404 188 115 6 39 199 64 249 3.81e-12 64.7
Msa1138110 MtrunA17_Chr4g0045431 26.442 208 107 7 18 181 6 211 6.08e-12 63.9
Msa1138110 MtrunA17_Chr3g0092531 28.767 146 80 2 38 159 5 150 7.48e-12 63.5
Msa1138110 MtrunA17_Chr7g0235991 29.600 125 69 2 51 156 38 162 8.07e-12 62.0
Msa1138110 MtrunA17_Chr5g0420981 26.147 218 115 10 39 217 53 263 1.21e-11 63.2
Msa1138110 MtrunA17_Chr2g0313111 29.268 164 90 6 39 180 28 187 3.13e-11 61.6
Msa1138110 MtrunA17_Chr1g0161111 26.425 193 114 7 15 181 106 296 4.35e-11 61.6
Msa1138110 MtrunA17_Chr5g0420951 24.103 195 121 5 14 181 27 221 5.93e-11 61.2
Msa1138110 MtrunA17_Chr1g0194321 30.723 166 87 6 39 178 20 183 6.16e-11 60.8
Msa1138110 MtrunA17_Chr8g0370721 23.786 206 114 9 39 211 52 247 7.42e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1138110 AT5G24530.1 35.294 204 108 4 1 181 1 203 3.95e-36 130
Msa1138110 AT4G10500.1 33.654 208 110 5 1 181 6 212 1.41e-29 113
Msa1138110 AT4G10490.1 32.195 205 112 4 4 181 6 210 1.47e-25 102
Msa1138110 AT5G07480.1 31.282 195 102 6 16 181 24 215 7.16e-24 97.8
Msa1138110 AT5G63590.1 34.286 175 88 3 34 181 9 183 1.62e-21 90.5
Msa1138110 AT2G38240.1 32.323 198 103 7 15 182 22 218 4.76e-21 90.1
Msa1138110 AT5G63580.2 29.480 173 97 2 34 181 14 186 5.45e-21 88.2
Msa1138110 AT5G63580.1 29.480 173 97 2 34 181 14 186 6.01e-21 88.2
Msa1138110 AT5G08640.2 30.392 204 114 5 6 181 9 212 7.08e-21 89.4
Msa1138110 AT5G08640.1 30.392 204 114 5 6 181 9 212 7.08e-21 89.4
Msa1138110 AT1G06650.1 32.127 221 106 9 10 198 41 249 7.24e-21 89.0
Msa1138110 AT1G06650.2 33.824 204 91 9 10 181 41 232 8.61e-21 89.4
Msa1138110 AT1G06640.3 30.137 219 113 8 10 198 41 249 1.24e-20 87.8
Msa1138110 AT1G06640.2 30.137 219 113 8 10 198 41 249 1.63e-20 88.2
Msa1138110 AT1G06640.1 30.137 219 113 8 10 198 41 249 4.09e-20 87.8
Msa1138110 AT1G06645.1 35.000 200 91 12 10 181 54 242 4.43e-20 87.8
Msa1138110 AT2G44800.1 29.557 203 100 7 16 182 27 222 6.72e-20 87.0
Msa1138110 AT3G19000.2 27.536 207 106 6 19 181 7 213 2.90e-19 84.0
Msa1138110 AT3G60290.1 31.282 195 105 8 16 181 27 221 3.74e-19 84.7
Msa1138110 AT3G19000.1 27.536 207 106 6 19 181 7 213 5.68e-19 84.3
Msa1138110 AT5G63600.2 30.939 181 102 4 23 180 15 195 6.07e-19 84.0
Msa1138110 AT5G63600.1 30.939 181 102 4 23 180 15 195 6.13e-19 84.0
Msa1138110 AT2G30830.1 32.292 192 92 7 39 198 54 239 1.66e-18 83.2
Msa1138110 AT1G06620.2 28.972 214 116 9 16 198 38 246 8.77e-18 80.1
Msa1138110 AT3G11180.2 29.064 203 106 8 14 181 65 264 1.37e-17 80.9
Msa1138110 AT3G11180.1 29.064 203 106 8 14 181 65 264 2.09e-17 80.1
Msa1138110 AT1G06620.1 28.972 214 116 9 16 198 38 246 2.10e-17 80.1
Msa1138110 AT3G51240.1 24.365 197 121 4 13 181 12 208 1.29e-16 77.8
Msa1138110 AT1G03410.2 30.612 196 105 7 16 181 31 225 1.73e-16 77.4
Msa1138110 AT1G03410.1 30.612 196 105 7 16 181 68 262 2.67e-16 77.0
Msa1138110 AT2G30840.1 32.000 175 84 8 38 181 56 226 2.92e-16 76.6
Msa1138110 AT2G30840.2 31.429 175 85 7 38 181 56 226 3.21e-16 76.3
Msa1138110 AT2G30840.3 32.000 175 84 8 38 181 56 226 3.30e-16 76.6
Msa1138110 AT5G51810.2 28.155 206 113 7 8 181 34 236 3.85e-16 75.9
Msa1138110 AT5G05600.2 30.500 200 107 7 14 181 36 235 4.08e-16 75.5
Msa1138110 AT5G51810.1 28.155 206 113 7 8 181 34 236 5.22e-16 76.3
Msa1138110 AT3G55970.2 29.557 203 107 8 15 181 24 226 5.51e-16 75.5
Msa1138110 AT5G05600.1 30.500 200 107 7 14 181 36 235 7.52e-16 75.5
Msa1138110 AT5G63595.1 31.138 167 80 4 35 181 21 172 7.59e-16 74.7
Msa1138110 AT3G55970.1 29.557 203 107 8 15 181 24 226 7.73e-16 75.5
Msa1138110 AT2G25450.1 28.708 209 106 10 30 208 49 244 2.37e-15 74.3
Msa1138110 AT2G36690.2 27.586 203 110 7 14 181 30 230 5.49e-15 73.2
Msa1138110 AT2G36690.1 27.586 203 110 7 14 181 30 230 5.49e-15 73.2
Msa1138110 AT1G03400.1 25.654 191 114 5 39 209 56 238 1.93e-14 71.6
Msa1138110 AT1G03400.2 25.654 191 114 5 39 209 56 238 2.96e-14 71.2
Msa1138110 AT5G43440.2 28.856 201 104 9 10 181 39 229 6.39e-14 69.7
Msa1138110 AT1G80330.1 29.480 173 89 6 39 181 49 218 8.33e-14 69.7
Msa1138110 AT5G43440.1 28.856 201 104 9 10 181 39 229 1.05e-13 69.3
Msa1138110 AT5G43450.2 25.243 206 110 8 6 181 35 226 1.38e-13 68.6
Msa1138110 AT5G43450.1 25.243 206 110 8 6 181 35 226 1.94e-13 68.6
Msa1138110 AT1G04350.1 30.952 168 89 8 39 181 58 223 7.05e-13 67.0
Msa1138110 AT3G61400.2 30.460 174 90 6 39 181 60 233 1.67e-12 65.5
Msa1138110 AT3G61400.1 30.460 174 90 6 39 181 60 233 1.77e-12 65.9
Msa1138110 AT1G15550.1 25.258 194 113 4 35 200 53 242 2.39e-12 65.5
Msa1138110 AT1G30040.2 30.108 186 99 6 33 192 25 205 2.67e-12 64.7
Msa1138110 AT1G30040.1 29.570 186 100 6 33 192 25 205 3.62e-12 65.1
Msa1138110 AT4G16330.2 28.070 171 93 4 39 181 67 235 4.00e-12 65.1
Msa1138110 AT1G04380.2 27.835 194 111 10 39 209 45 232 4.56e-12 63.9
Msa1138110 AT1G04380.1 27.835 194 111 10 39 209 45 232 8.38e-12 63.9
Msa1138110 AT5G59530.1 25.352 213 131 8 14 198 33 245 9.51e-12 63.9
Msa1138110 AT1G05010.1 28.221 163 98 4 38 181 6 168 1.01e-11 63.5
Msa1138110 AT3G12900.1 27.830 212 123 7 14 198 31 239 1.13e-11 63.5
Msa1138110 AT3G21420.1 26.512 215 120 6 39 216 55 268 1.19e-11 63.5
Msa1138110 AT1G55290.1 28.169 213 119 7 15 198 36 243 1.84e-11 62.8
Msa1138110 AT1G62380.1 26.946 167 98 6 39 182 7 172 2.96e-11 62.0
Msa1138110 AT1G12010.1 27.108 166 97 4 39 181 7 171 5.01e-11 61.6
Msa1138110 AT5G59540.2 26.396 197 114 8 31 198 53 247 5.25e-11 61.2
Msa1138110 AT5G59540.1 26.396 197 114 8 31 198 53 247 8.64e-11 60.8

Find 58 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTGAAAGTCCATTATTGTT+AGG 0.266675 7_4:+7407101 Msa1138110:CDS
AAGTCCACCAGAACAATATT+TGG 0.273525 7_4:-7407078 None:intergenic
GTTTGTTGGACGGATGAAAT+AGG 0.315551 7_4:-7408482 None:intergenic
GCAAAGCCTTTGACATGTTC+TGG 0.317739 7_4:+7408523 Msa1138110:CDS
GCCGTGCCGGGTCTACTTTC+CGG 0.323728 7_4:-7402325 None:intergenic
CAGGTGAATTCATGGAGTTT+TGG 0.325921 7_4:+7403176 Msa1138110:intron
TTGAGAGCTTCTGAGGAGTA+TGG 0.335017 7_4:+7402424 Msa1138110:CDS
TCCACCTTCAGGTGAATTCA+TGG 0.337468 7_4:+7403168 Msa1138110:intron
CACCGTGTTGTGACAAATTC+AGG 0.337876 7_4:+7408439 Msa1138110:CDS
GGCACGGCGTCTGTGATTTC+CGG 0.339540 7_4:+7402340 Msa1138110:CDS
TAGAGTCTACAACTTCCATT+AGG 0.351569 7_4:-7403079 None:intergenic
AGTCCACCAGAACAATATTT+GGG 0.355434 7_4:-7407077 None:intergenic
CACCACCGGGATTATCTTGC+CGG 0.356208 7_4:-7402359 None:intergenic
GAACATGTCAAAGGCTTTGC+TGG 0.371604 7_4:-7408520 None:intergenic
TAGTGATGCCCTAACAATAA+TGG 0.378255 7_4:-7407110 None:intergenic
TGGAGTTTCCAAGGAGTTGA+TGG 0.384054 7_4:+7402982 Msa1138110:CDS
TCGATTTACCGGTATCTTGT+AGG 0.387301 7_4:-7403208 None:intergenic
CTTGACCCCAAATATTGTTC+TGG 0.395212 7_4:+7407071 Msa1138110:CDS
GTGAAAGTCCATTATTGTTA+GGG 0.405011 7_4:+7407102 Msa1138110:CDS
AGCACTGGGACTTAAAATAT+TGG 0.414166 7_4:+7407025 Msa1138110:CDS
GGTGGTTGCACATACGATAA+AGG 0.428892 7_4:-7402304 None:intergenic
ATAACATGCTTGTCTCTAGT+TGG 0.437687 7_4:+7402260 Msa1138110:CDS
ATAATCCCGGTGGTGGATCT+TGG 0.440681 7_4:+7402367 Msa1138110:CDS
TCTATGATATTATCGTTTGT+TGG 0.451379 7_4:-7408496 None:intergenic
GAAATCACAGACGCCGTGCC+GGG 0.455321 7_4:-7402337 None:intergenic
AAAAGATAAGTGAAAGTTCA+AGG 0.463084 7_4:+7403053 Msa1138110:CDS
GAAAGTTCAAGGGACCCTAA+TGG 0.475802 7_4:+7403064 Msa1138110:CDS
CCCAAGGTTAAACTTGGCTC+TGG 0.484912 7_4:-7407143 None:intergenic
TGTATCATCCATCAACTCCT+TGG 0.485838 7_4:-7402990 None:intergenic
GAGTTGATATGTGAAGGGTT+AGG 0.488365 7_4:+7407047 Msa1138110:CDS
AGAGTCTACAACTTCCATTA+GGG 0.490244 7_4:-7403078 None:intergenic
GGAAATCACAGACGCCGTGC+CGG 0.506940 7_4:-7402338 None:intergenic
TGATATTATCGTTTGTTGGA+CGG 0.511590 7_4:-7408492 None:intergenic
TACACAAGAAATGAGAGCAC+TGG 0.513408 7_4:+7407010 Msa1138110:CDS
CAACCACCGGAAAGTAGACC+CGG 0.523348 7_4:+7402319 Msa1138110:CDS
ATCCCGGTGGTGGATCTTGG+TGG 0.536047 7_4:+7402370 Msa1138110:CDS
TGTTAACCATGGAGTTTCCA+AGG 0.540398 7_4:+7402973 Msa1138110:CDS
TATTGGAGTTGATATGTGAA+GGG 0.547894 7_4:+7407042 Msa1138110:CDS
CGGCAAGATAATCCCGGTGG+TGG 0.552157 7_4:+7402360 Msa1138110:CDS
ATATTGGAGTTGATATGTGA+AGG 0.560594 7_4:+7407041 Msa1138110:CDS
CACAAAAGCCTACAAGATAC+CGG 0.561375 7_4:+7403200 Msa1138110:CDS
GACCCCAAATATTGTTCTGG+TGG 0.563730 7_4:+7407074 Msa1138110:CDS
ATTTATAAGGTTGTTAACCA+TGG 0.564655 7_4:+7402962 Msa1138110:intron
AAAGATAAGTGAAAGTTCAA+GGG 0.568605 7_4:+7403054 Msa1138110:CDS
GTTAAACTTGGCTCTGGACA+AGG 0.569423 7_4:-7407137 None:intergenic
GACCACCAAGATCCACCACC+GGG 0.598905 7_4:-7402372 None:intergenic
GATTTCCGGCAAGATAATCC+CGG 0.610043 7_4:+7402354 Msa1138110:CDS
ACACAAGAAATGAGAGCACT+GGG 0.611010 7_4:+7407011 Msa1138110:CDS
TCAACTCCTTGGAAACTCCA+TGG 0.618739 7_4:-7402979 None:intergenic
TGACCACCAAGATCCACCAC+CGG 0.619625 7_4:-7402373 None:intergenic
TTTATCGTATGTGCAACCAC+CGG 0.630904 7_4:+7402306 Msa1138110:CDS
GGATCACCAGAACATGTCAA+AGG 0.631695 7_4:-7408529 None:intergenic
GTGCCGGGTCTACTTTCCGG+TGG 0.645714 7_4:-7402322 None:intergenic
AAACTTGGCTCTGGACAAGG+TGG 0.678875 7_4:-7407134 None:intergenic
TGCCTGAATTTGTCACAACA+CGG 0.682552 7_4:-7408441 None:intergenic
GTCCACCAGAACAATATTTG+GGG 0.687507 7_4:-7407076 None:intergenic
ACGGATGAAATAGGCAACAG+TGG 0.707473 7_4:-7408473 None:intergenic
TTCCGGCAAGATAATCCCGG+TGG 0.727151 7_4:+7402357 Msa1138110:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATTTTTAAAATTTTTTA+CGG - chr7_4:7404987-7405006 None:intergenic 0.0%
!!! AAAATATTAATTATAATTTT+TGG + chr7_4:7407381-7407400 Msa1138110:intron 0.0%
!!! TTTATTTTTTTAGACAAAAA+AGG - chr7_4:7406142-7406161 None:intergenic 10.0%
!! TTATAAAGGAATTATTAAAA+GGG - chr7_4:7406419-7406438 None:intergenic 10.0%
!!! ACATGTTAATTTTTTTTTTA+CGG + chr7_4:7406776-7406795 Msa1138110:intron 10.0%
!!! TTTTGTTTATATTTTATGAA+GGG - chr7_4:7407326-7407345 None:intergenic 10.0%
!!! ATTTTGTTTATATTTTATGA+AGG - chr7_4:7407327-7407346 None:intergenic 10.0%
!!! TTTTTGTTTATATTCAAAAT+AGG - chr7_4:7407365-7407384 None:intergenic 10.0%
!! AATAAACAAATATTAACTTA+GGG - chr7_4:7407467-7407486 None:intergenic 10.0%
!! AAATAAACAAATATTAACTT+AGG - chr7_4:7407468-7407487 None:intergenic 10.0%
!!! CTTATAAGAATTTTATTTTT+AGG - chr7_4:7407613-7407632 None:intergenic 10.0%
!! TTTGAATATTTCATTCTATA+TGG + chr7_4:7402487-7402506 Msa1138110:intron 15.0%
!! TTAATTAAGAAGAAAATTCT+AGG + chr7_4:7402723-7402742 Msa1138110:intron 15.0%
!! TAATTAAGAAGAAAATTCTA+GGG + chr7_4:7402724-7402743 Msa1138110:intron 15.0%
!!! TTCAATGATTTATTTTCATT+AGG + chr7_4:7402837-7402856 Msa1138110:intron 15.0%
!! AAATAAGCAAAAAAAAAAGA+AGG - chr7_4:7403255-7403274 None:intergenic 15.0%
!! TATTATTTGAATAAAGAAGT+GGG - chr7_4:7403289-7403308 None:intergenic 15.0%
!! TTATTATTTGAATAAAGAAG+TGG - chr7_4:7403290-7403309 None:intergenic 15.0%
!!! TACTTATTTTATCCTTATTA+TGG + chr7_4:7403346-7403365 Msa1138110:intron 15.0%
!! TTAAAAATTTAGATTGCATA+TGG - chr7_4:7403659-7403678 None:intergenic 15.0%
!! TGTTTACATAAATAAGAAAT+CGG + chr7_4:7403817-7403836 Msa1138110:intron 15.0%
!! AATTCTTAAAAATGGTTAAA+AGG + chr7_4:7404408-7404427 Msa1138110:intron 15.0%
!! AAGTATAAAATAATTAATGC+AGG + chr7_4:7404549-7404568 Msa1138110:intron 15.0%
!! ATTAAATTGAGTATACAATT+TGG - chr7_4:7404630-7404649 None:intergenic 15.0%
!!! TTTTAAAATTTTTTACGGTT+CGG - chr7_4:7404982-7405001 None:intergenic 15.0%
!! TTTCCTTCTTAAAAAAAAAA+GGG + chr7_4:7405062-7405081 Msa1138110:intron 15.0%
!! AACTTTATGATCATATAATA+TGG - chr7_4:7405164-7405183 None:intergenic 15.0%
!! TATTAATTAGTGAATACAAT+CGG - chr7_4:7405202-7405221 None:intergenic 15.0%
!! TGATATACATTAAAATAAAG+AGG + chr7_4:7406363-7406382 Msa1138110:intron 15.0%
!! GATATACATTAAAATAAAGA+GGG + chr7_4:7406364-7406383 Msa1138110:intron 15.0%
!! CTTATAAAGGAATTATTAAA+AGG - chr7_4:7406420-7406439 None:intergenic 15.0%
!! AATAGTTCAACTATAAAATA+TGG - chr7_4:7406923-7406942 None:intergenic 15.0%
!! AAATCTGATAAATAAAGTAA+TGG - chr7_4:7407546-7407565 None:intergenic 15.0%
!! ACAAAAATTAAAAAATGTCC+AGG + chr7_4:7402570-7402589 Msa1138110:intron 20.0%
!! TCTAGTCACAATTATAATTA+TGG - chr7_4:7402646-7402665 None:intergenic 20.0%
!! TTCTAATTATCACAGAAAAA+GGG - chr7_4:7402779-7402798 None:intergenic 20.0%
!! ATTCTAATTATCACAGAAAA+AGG - chr7_4:7402780-7402799 None:intergenic 20.0%
!! ATATCAAGATTTAAATCGTA+AGG + chr7_4:7402874-7402893 Msa1138110:intron 20.0%
!! TAACGACAAACATATATATA+TGG - chr7_4:7402917-7402936 None:intergenic 20.0%
!! TATTTAATGTGAAAAACTTG+TGG + chr7_4:7402935-7402954 Msa1138110:intron 20.0%
!! AACTTGTGGATTTATTTATA+AGG + chr7_4:7402949-7402968 Msa1138110:intron 20.0%
!! GTTAATTAATGGTTTAGTTA+CGG + chr7_4:7403377-7403396 Msa1138110:intron 20.0%
!!! ATTTGGAAACTTACTTTTTT+AGG + chr7_4:7403439-7403458 Msa1138110:intron 20.0%
!!! ACTTTTTTAGGAAACTTATT+TGG + chr7_4:7403451-7403470 Msa1138110:intron 20.0%
!!! TTTGGAAACTTACTTTTTTT+AGG + chr7_4:7403516-7403535 Msa1138110:intron 20.0%
!!! CTTTTTTTAGGAAACTTATT+TGG + chr7_4:7403528-7403547 Msa1138110:intron 20.0%
!!! GTTTAAATTTTTCGCATTTT+AGG - chr7_4:7403725-7403744 None:intergenic 20.0%
!! GTTTACATAAATAAGAAATC+GGG + chr7_4:7403818-7403837 Msa1138110:intron 20.0%
!! TTTACATAAATAAGAAATCG+GGG + chr7_4:7403819-7403838 Msa1138110:intron 20.0%
!! GCAAATTCAATTAATTACTT+TGG - chr7_4:7404094-7404113 None:intergenic 20.0%
!! AAATAAATATCGTACCAAAA+CGG + chr7_4:7404145-7404164 Msa1138110:intron 20.0%
!! TAAAAAAAAACAGTTCAGAA+GGG + chr7_4:7404284-7404303 Msa1138110:intron 20.0%
!! AAAATGGAGAGAATTATAAA+TGG - chr7_4:7404490-7404509 None:intergenic 20.0%
!! TATAAAATAATTAATGCAGG+TGG + chr7_4:7404552-7404571 Msa1138110:intron 20.0%
!! ATAAAATAATTAATGCAGGT+GGG + chr7_4:7404553-7404572 Msa1138110:intron 20.0%
!! AGTAAATACTTTCACTAAAT+GGG - chr7_4:7404580-7404599 None:intergenic 20.0%
!! TAGTAAATACTTTCACTAAA+TGG - chr7_4:7404581-7404600 None:intergenic 20.0%
!!! ACTCAATTTAATTTGACAAA+TGG + chr7_4:7404638-7404657 Msa1138110:intron 20.0%
!!! TGATACAATACATTGTTTTA+GGG - chr7_4:7404783-7404802 None:intergenic 20.0%
!!! TCACTTCTAAATTAGTTTTT+GGG - chr7_4:7404844-7404863 None:intergenic 20.0%
!! ATTTATGTTGAAGATAAGTA+AGG - chr7_4:7404902-7404921 None:intergenic 20.0%
!! CTTTCCTTCTTAAAAAAAAA+AGG + chr7_4:7405061-7405080 Msa1138110:intron 20.0%
!! TTCCTTCTTAAAAAAAAAAG+GGG + chr7_4:7405063-7405082 Msa1138110:intron 20.0%
!!! TCAACTGTTTTTAATTCTTT+TGG + chr7_4:7405730-7405749 Msa1138110:intron 20.0%
!! ATTATTATTTATGACTCATG+TGG - chr7_4:7406268-7406287 None:intergenic 20.0%
!! ACTTTAAATGAAACTAACAA+GGG - chr7_4:7407889-7407908 None:intergenic 20.0%
!! AACTTTAAATGAAACTAACA+AGG - chr7_4:7407890-7407909 None:intergenic 20.0%
!! TAGAAATACAAAATGAAATG+AGG - chr7_4:7407935-7407954 None:intergenic 20.0%
!! GAAGATTAATTACTTCTATA+CGG + chr7_4:7408216-7408235 Msa1138110:intron 20.0%
! GAATGAAATATTCAAACGTA+AGG - chr7_4:7402483-7402502 None:intergenic 25.0%
! AAATTAAAAAATGTCCAGGT+TGG + chr7_4:7402574-7402593 Msa1138110:intron 25.0%
!!! TATTTTATTTTACACCAACC+TGG - chr7_4:7402591-7402610 None:intergenic 25.0%
! ATTTATAAGGTTGTTAACCA+TGG + chr7_4:7402962-7402981 Msa1138110:intron 25.0%
!! TGATACAATGAACATTTTCA+AGG + chr7_4:7403006-7403025 Msa1138110:CDS 25.0%
!! TCACTTATCTTTTCTAATTC+AGG - chr7_4:7403046-7403065 None:intergenic 25.0%
! AAAAGATAAGTGAAAGTTCA+AGG + chr7_4:7403053-7403072 Msa1138110:CDS 25.0%
! AAAGATAAGTGAAAGTTCAA+GGG + chr7_4:7403054-7403073 Msa1138110:CDS 25.0%
!! AGTCTTGACATTTGATTTAT+TGG - chr7_4:7403607-7403626 None:intergenic 25.0%
! ATTTCCAAATACAACTATGT+TGG - chr7_4:7403792-7403811 None:intergenic 25.0%
!!! GTTGTTTTATGCTATTAACA+TGG - chr7_4:7403992-7404011 None:intergenic 25.0%
! AAAAGATTATCTTTGAGCAA+GGG - chr7_4:7404116-7404135 None:intergenic 25.0%
! TAAAAGATTATCTTTGAGCA+AGG - chr7_4:7404117-7404136 None:intergenic 25.0%
! AATAAATATCGTACCAAAAC+GGG + chr7_4:7404146-7404165 Msa1138110:intron 25.0%
! CTAAAAAAAAACAGTTCAGA+AGG + chr7_4:7404283-7404302 Msa1138110:intron 25.0%
! AGAGGGATAATTCTTAAAAA+TGG + chr7_4:7404400-7404419 Msa1138110:intron 25.0%
!!! GTAGCTTTTTTCATTAAAAG+TGG - chr7_4:7404444-7404463 None:intergenic 25.0%
! TATATCTTTATCTCACCAAA+TGG - chr7_4:7404515-7404534 None:intergenic 25.0%
!!! ATTTAATTTGACAAATGGAG+AGG + chr7_4:7404643-7404662 Msa1138110:intron 25.0%
!! GTGATACAATACATTGTTTT+AGG - chr7_4:7404784-7404803 None:intergenic 25.0%
!!! GTCACTTCTAAATTAGTTTT+TGG - chr7_4:7404845-7404864 None:intergenic 25.0%
! TTTAACAAAACTAAACCGTA+TGG + chr7_4:7404954-7404973 Msa1138110:intron 25.0%
!!! AACCCCTTTTTTTTTTAAGA+AGG - chr7_4:7405068-7405087 None:intergenic 25.0%
!! ATTCTTTAGACCATTTTAAG+AGG + chr7_4:7405137-7405156 Msa1138110:intron 25.0%
! ATAATATGGACCTCTTAAAA+TGG - chr7_4:7405150-7405169 None:intergenic 25.0%
! AATCATCATCTATTTGTATG+TGG - chr7_4:7405285-7405304 None:intergenic 25.0%
!! CATCTCTATTTCTTATCATT+AGG - chr7_4:7405612-7405631 None:intergenic 25.0%
! AATAAAGTTGCAATTTGTGA+AGG - chr7_4:7405756-7405775 None:intergenic 25.0%
! TATTATCTTGATCGTTATCA+AGG - chr7_4:7405834-7405853 None:intergenic 25.0%
! AACTTTCACAATCAACTTTA+AGG - chr7_4:7405957-7405976 None:intergenic 25.0%
! AATTATTAAAAGGGCAAACA+AGG - chr7_4:7406410-7406429 None:intergenic 25.0%
! TAGTTACATTCTATATGCAA+CGG - chr7_4:7406532-7406551 None:intergenic 25.0%
!! ATATTTTGCAACTATTTCAC+TGG - chr7_4:7406991-7407010 None:intergenic 25.0%
!! ATCATTTTCTTGAAACAGAA+TGG - chr7_4:7407201-7407220 None:intergenic 25.0%
!! GTTTATATTTTATGAAGGGA+GGG - chr7_4:7407322-7407341 None:intergenic 25.0%
!! TGTTTATATTTTATGAAGGG+AGG - chr7_4:7407323-7407342 None:intergenic 25.0%
!!! ATTTTAAAATGTACCCTCAT+AGG - chr7_4:7407522-7407541 None:intergenic 25.0%
! AATGAAATGAGGAATAATGT+AGG - chr7_4:7407924-7407943 None:intergenic 25.0%
! TCAACAAAGATTAAATCAAG+TGG + chr7_4:7408084-7408103 Msa1138110:intron 25.0%
! AATGTGTAGATCATTAGTAA+TGG + chr7_4:7408397-7408416 Msa1138110:intron 25.0%
! TCTATGATATTATCGTTTGT+TGG - chr7_4:7408499-7408518 None:intergenic 25.0%
CAAAATCTTAAGTACAAACC+TGG - chr7_4:7402456-7402475 None:intergenic 30.0%
! GATAAGTGTGTTCTAAATTG+AGG + chr7_4:7402619-7402638 Msa1138110:intron 30.0%
TGATTGAACTTCAAATTTCC+AGG + chr7_4:7402752-7402771 Msa1138110:intron 30.0%
! TATCTTTTCTAATTCAGGCA+TGG - chr7_4:7403041-7403060 None:intergenic 30.0%
AAGTCGTGAGATTAATAACA+AGG + chr7_4:7403105-7403124 Msa1138110:intron 30.0%
! ACAAGGATTTTGTTCAGTAT+TGG + chr7_4:7403122-7403141 Msa1138110:intron 30.0%
!! GAAATGAATTGTCGATTTAC+CGG - chr7_4:7403222-7403241 None:intergenic 30.0%
TTGCTAAATAATGAGCAGAT+TGG + chr7_4:7403688-7403707 Msa1138110:intron 30.0%
TAAATAATGAGCAGATTGGT+TGG + chr7_4:7403692-7403711 Msa1138110:intron 30.0%
!! CGAGATTGTATTAGCTTTAA+GGG - chr7_4:7403759-7403778 None:intergenic 30.0%
!! TCGAGATTGTATTAGCTTTA+AGG - chr7_4:7403760-7403779 None:intergenic 30.0%
CAAAGTCAGCAAAAACAAAA+AGG + chr7_4:7403939-7403958 Msa1138110:intron 30.0%
!!! GTGTTTTTAATTTCCCGTTT+TGG - chr7_4:7404162-7404181 None:intergenic 30.0%
TTAAAAACACTGCACAAAGA+CGG + chr7_4:7404172-7404191 Msa1138110:intron 30.0%
TAGATCAAGAAGAACAAAAG+TGG + chr7_4:7404348-7404367 Msa1138110:intron 30.0%
AGATCAAGAAGAACAAAAGT+GGG + chr7_4:7404349-7404368 Msa1138110:intron 30.0%
AGGGTAGTTACAATACATAA+AGG - chr7_4:7404764-7404783 None:intergenic 30.0%
!!! AATGCAACATTTGTTTTGAG+AGG + chr7_4:7405359-7405378 Msa1138110:intron 30.0%
TTCACACAAGAATTGAACTA+AGG + chr7_4:7405483-7405502 Msa1138110:intron 30.0%
TATCATTAGGCAAATATTCG+TGG - chr7_4:7405599-7405618 None:intergenic 30.0%
ATCAATCTATAGAAAAGAGG+TGG - chr7_4:7405924-7405943 None:intergenic 30.0%
GCAATCAATCTATAGAAAAG+AGG - chr7_4:7405927-7405946 None:intergenic 30.0%
! AAGTTGATTGTGAAAGTTAC+AGG + chr7_4:7405959-7405978 Msa1138110:intron 30.0%
ATTTGATTCCATCACATTCT+TGG + chr7_4:7405994-7406013 Msa1138110:intron 30.0%
! TGATTTTACCAAGAATGTGA+TGG - chr7_4:7406005-7406024 None:intergenic 30.0%
ACCAAAATACGTTACTTCTA+TGG + chr7_4:7406026-7406045 Msa1138110:intron 30.0%
! ACCATAGAAGTAACGTATTT+TGG - chr7_4:7406030-7406049 None:intergenic 30.0%
! ATGCGTCATATATTGATTGA+TGG + chr7_4:7406223-7406242 Msa1138110:intron 30.0%
! GAATGATGGAAGACTTATAA+AGG - chr7_4:7406433-7406452 None:intergenic 30.0%
ATTATAGAGTGACATATGCA+TGG + chr7_4:7406565-7406584 Msa1138110:intron 30.0%
ATGGTTATGATTAGTACCAT+TGG + chr7_4:7406584-7406603 Msa1138110:intron 30.0%
! TACCTACCAACTTTAAGAAA+GGG + chr7_4:7406712-7406731 Msa1138110:intron 30.0%
! CTTTTTCCCTTTCTTAAAGT+TGG - chr7_4:7406721-7406740 None:intergenic 30.0%
! GTGTTTTCTCTTTTTCTCTT+TGG - chr7_4:7406758-7406777 None:intergenic 30.0%
!! ATATTGGAGTTGATATGTGA+AGG + chr7_4:7407041-7407060 Msa1138110:CDS 30.0%
!! TATTGGAGTTGATATGTGAA+GGG + chr7_4:7407042-7407061 Msa1138110:CDS 30.0%
AGTGAAAGTCCATTATTGTT+AGG + chr7_4:7407101-7407120 Msa1138110:CDS 30.0%
GTGAAAGTCCATTATTGTTA+GGG + chr7_4:7407102-7407121 Msa1138110:CDS 30.0%
! ATGTTAACCACAAAAGCATA+TGG - chr7_4:7407278-7407297 None:intergenic 30.0%
! TATGCTTTTGTGGTTAACAT+TGG + chr7_4:7407278-7407297 Msa1138110:intron 30.0%
!!! ACTTAGGGTTGTTTTAAGAA+TGG - chr7_4:7407452-7407471 None:intergenic 30.0%
!!! CATGACATGTTTTTGGTTAT+GGG - chr7_4:7407688-7407707 None:intergenic 30.0%
!!! TCATGACATGTTTTTGGTTA+TGG - chr7_4:7407689-7407708 None:intergenic 30.0%
TCAGGATATATGTGTATTTC+TGG - chr7_4:7407739-7407758 None:intergenic 30.0%
ATCAACCTTATATGTAGAAC+CGG + chr7_4:7408185-7408204 Msa1138110:intron 30.0%
AATTAATCTTCATCGTGAAC+CGG - chr7_4:7408207-7408226 None:intergenic 30.0%
GATTAATTACTTCTATACGG+TGG + chr7_4:7408219-7408238 Msa1138110:intron 30.0%
ACTTTGTACCTATGATAACA+TGG + chr7_4:7408247-7408266 Msa1138110:intron 30.0%
TTTGGTTACCATGTTATCAT+AGG - chr7_4:7408258-7408277 None:intergenic 30.0%
! TGTAGATCATTAGTAATGGA+AGG + chr7_4:7408401-7408420 Msa1138110:intron 30.0%
! TGATATTATCGTTTGTTGGA+CGG - chr7_4:7408495-7408514 None:intergenic 30.0%
ATAACATGCTTGTCTCTAGT+TGG + chr7_4:7402260-7402279 Msa1138110:CDS 35.0%
AGAGTCTACAACTTCCATTA+GGG - chr7_4:7403081-7403100 None:intergenic 35.0%
TAGAGTCTACAACTTCCATT+AGG - chr7_4:7403082-7403101 None:intergenic 35.0%
!! AGGATTTTGTTCAGTATTGG+AGG + chr7_4:7403125-7403144 Msa1138110:intron 35.0%
!! GGATTTTGTTCAGTATTGGA+GGG + chr7_4:7403126-7403145 Msa1138110:intron 35.0%
AATCTCTACTCATCTTGAAG+GGG - chr7_4:7403325-7403344 None:intergenic 35.0%
GAATCTCTACTCATCTTGAA+GGG - chr7_4:7403326-7403345 None:intergenic 35.0%
AGAATCTCTACTCATCTTGA+AGG - chr7_4:7403327-7403346 None:intergenic 35.0%
TAACAGCTATCGCCATAATA+AGG - chr7_4:7403361-7403380 None:intergenic 35.0%
TGGCGATAGCTGTTAATTAA+TGG + chr7_4:7403366-7403385 Msa1138110:intron 35.0%
AAGACTGCAGAAATACAAGA+TGG + chr7_4:7403621-7403640 Msa1138110:intron 35.0%
AGAGCCAACATAGTTGTATT+TGG + chr7_4:7403785-7403804 Msa1138110:intron 35.0%
AAAAAAACAGTTCAGAAGGG+TGG + chr7_4:7404287-7404306 Msa1138110:intron 35.0%
!!! GGGTGGTTTTAGGTTAAAAT+TGG + chr7_4:7404304-7404323 Msa1138110:intron 35.0%
GATCAAGAAGAACAAAAGTG+GGG + chr7_4:7404350-7404369 Msa1138110:intron 35.0%
ATTCGGAAAAGAGAAAAGAG+AGG + chr7_4:7404382-7404401 Msa1138110:intron 35.0%
TTCGGAAAAGAGAAAAGAGA+GGG + chr7_4:7404383-7404402 Msa1138110:intron 35.0%
GGAGAGAATTATAAATGGAG+AGG - chr7_4:7404485-7404504 None:intergenic 35.0%
! TTCTCTCCATTTTCTCCATT+TGG + chr7_4:7404497-7404516 Msa1138110:intron 35.0%
ATCTCACCAAATGGAGAAAA+TGG - chr7_4:7404506-7404525 None:intergenic 35.0%
GATCTTTATTCCTGTTGAAC+CGG + chr7_4:7404665-7404684 Msa1138110:intron 35.0%
ATCTTTATTCCTGTTGAACC+GGG + chr7_4:7404666-7404685 Msa1138110:intron 35.0%
TAGAGTTGTCTAATATGACC+CGG - chr7_4:7404687-7404706 None:intergenic 35.0%
!! TTTTGAGAGGTCAAATGTCA+CGG + chr7_4:7405372-7405391 Msa1138110:intron 35.0%
TGATCAAAAGTTCGATCATG+AGG + chr7_4:7405433-7405452 Msa1138110:intron 35.0%
!! CCAACAAAGAAGAAGTGTTT+AGG - chr7_4:7405513-7405532 None:intergenic 35.0%
CCTAAACACTTCTTCTTTGT+TGG + chr7_4:7405510-7405529 Msa1138110:intron 35.0%
AGGCAAATATTCGTGGTTTA+TGG - chr7_4:7405592-7405611 None:intergenic 35.0%
AATAGAGATGATCTCCAACT+TGG + chr7_4:7405650-7405669 Msa1138110:intron 35.0%
! GCAACTTTATTTAATCCTCG+AGG + chr7_4:7405765-7405784 Msa1138110:intron 35.0%
TTATTTAATCCTCGAGGTCT+AGG + chr7_4:7405771-7405790 Msa1138110:intron 35.0%
GTTGTTGTATGGAAGAATGA+TGG - chr7_4:7406447-7406466 None:intergenic 35.0%
TCATTCTTCCATACAACAAC+AGG + chr7_4:7406447-7406466 Msa1138110:intron 35.0%
CATAAGTTCCTGTTGTTGTA+TGG - chr7_4:7406458-7406477 None:intergenic 35.0%
CATACAACAACAGGAACTTA+TGG + chr7_4:7406456-7406475 Msa1138110:intron 35.0%
GAACTAACAAGTTTATGGTG+TGG - chr7_4:7406498-7406517 None:intergenic 35.0%
GTGGTGAACTAACAAGTTTA+TGG - chr7_4:7406503-7406522 None:intergenic 35.0%
TACATTCTATATGCAACGGT+AGG - chr7_4:7406528-7406547 None:intergenic 35.0%
TGTTAATTTCATGCAGCCAA+TGG - chr7_4:7406603-7406622 None:intergenic 35.0%
TGAAATTAACAACACCCACA+TGG + chr7_4:7406612-7406631 Msa1138110:intron 35.0%
! CTACCTACCAACTTTAAGAA+AGG + chr7_4:7406711-7406730 Msa1138110:intron 35.0%
! TTCCCTTTCTTAAAGTTGGT+AGG - chr7_4:7406717-7406736 None:intergenic 35.0%
! AGCACTGGGACTTAAAATAT+TGG + chr7_4:7407025-7407044 Msa1138110:CDS 35.0%
AGTCCACCAGAACAATATTT+GGG - chr7_4:7407080-7407099 None:intergenic 35.0%
AAGTCCACCAGAACAATATT+TGG - chr7_4:7407081-7407100 None:intergenic 35.0%
TAGTGATGCCCTAACAATAA+TGG - chr7_4:7407113-7407132 None:intergenic 35.0%
AACAGAATGGTAACAAGGTT+AGG - chr7_4:7407188-7407207 None:intergenic 35.0%
CTTGAAACAGAATGGTAACA+AGG - chr7_4:7407193-7407212 None:intergenic 35.0%
CTCTTGAAGTCTTCAAAGAT+GGG + chr7_4:7407228-7407247 Msa1138110:intron 35.0%
TCTTGAAGTCTTCAAAGATG+GGG + chr7_4:7407229-7407248 Msa1138110:intron 35.0%
! ACCACAAAAGCATATGGAAT+TGG - chr7_4:7407272-7407291 None:intergenic 35.0%
!!! TAACATTGGTCTTCTTTTGC+AGG + chr7_4:7407292-7407311 Msa1138110:intron 35.0%
TTGCAAAGAAAGTTCCTATG+AGG + chr7_4:7407505-7407524 Msa1138110:intron 35.0%
TGCAAAGAAAGTTCCTATGA+GGG + chr7_4:7407506-7407525 Msa1138110:intron 35.0%
TGTGACACGATTTAGTGAAA+GGG - chr7_4:7407636-7407655 None:intergenic 35.0%
TTGTGACACGATTTAGTGAA+AGG - chr7_4:7407637-7407656 None:intergenic 35.0%
! GGGAAATCATGACATGTTTT+TGG - chr7_4:7407695-7407714 None:intergenic 35.0%
AGCAAATGGTGACATGATTT+GGG - chr7_4:7407715-7407734 None:intergenic 35.0%
AAGCAAATGGTGACATGATT+TGG - chr7_4:7407716-7407735 None:intergenic 35.0%
!! TGTGTATTTCTGGAAGCAAA+TGG - chr7_4:7407729-7407748 None:intergenic 35.0%
! TTGAAATCGTGACACGATTT+TGG - chr7_4:7407802-7407821 None:intergenic 35.0%
ACTCATACGTAAGTAGTGAT+GGG + chr7_4:7408119-7408138 Msa1138110:intron 35.0%
! ATTAGTAATGGAAGGCTGAT+AGG + chr7_4:7408409-7408428 Msa1138110:intron 35.0%
TTTATCGTATGTGCAACCAC+CGG + chr7_4:7402306-7402325 Msa1138110:CDS 40.0%
!! TGAGGAGTATGGATTTTTCC+AGG + chr7_4:7402435-7402454 Msa1138110:CDS 40.0%
TTATCACAGAAAAAGGGTCC+TGG - chr7_4:7402773-7402792 None:intergenic 40.0%
TGTTAACCATGGAGTTTCCA+AGG + chr7_4:7402973-7402992 Msa1138110:CDS 40.0%
TGTATCATCCATCAACTCCT+TGG - chr7_4:7402993-7403012 None:intergenic 40.0%
! AGTATTGGAGGGACACATTA+AGG + chr7_4:7403137-7403156 Msa1138110:intron 40.0%
AACTCCATGAATTCACCTGA+AGG - chr7_4:7403175-7403194 None:intergenic 40.0%
! CAGGTGAATTCATGGAGTTT+TGG + chr7_4:7403176-7403195 Msa1138110:intron 40.0%
CACAAAAGCCTACAAGATAC+CGG + chr7_4:7403200-7403219 Msa1138110:CDS 40.0%
TCGATTTACCGGTATCTTGT+AGG - chr7_4:7403211-7403230 None:intergenic 40.0%
ATCTCTACTCATCTTGAAGG+GGG - chr7_4:7403324-7403343 None:intergenic 40.0%
TCTTCTTGATCTACCGAAGA+GGG - chr7_4:7404341-7404360 None:intergenic 40.0%
TTCTTCTTGATCTACCGAAG+AGG - chr7_4:7404342-7404361 None:intergenic 40.0%
!!! TTTTACGGTTCGGTTCCATA+CGG - chr7_4:7404972-7404991 None:intergenic 40.0%
! TGATTAGTCGTAGTCCAAGT+TGG - chr7_4:7405667-7405686 None:intergenic 40.0%
AGAGGTGGTATTTGTCAACT+GGG - chr7_4:7405909-7405928 None:intergenic 40.0%
AAGAGGTGGTATTTGTCAAC+TGG - chr7_4:7405910-7405929 None:intergenic 40.0%
!! GACGCATGTATTCTAAGATG+AGG - chr7_4:7406210-7406229 None:intergenic 40.0%
ATTCTATATGCAACGGTAGG+TGG - chr7_4:7406525-7406544 None:intergenic 40.0%
! TACACAAGAAATGAGAGCAC+TGG + chr7_4:7407010-7407029 Msa1138110:CDS 40.0%
!! ACACAAGAAATGAGAGCACT+GGG + chr7_4:7407011-7407030 Msa1138110:CDS 40.0%
!! GAGTTGATATGTGAAGGGTT+AGG + chr7_4:7407047-7407066 Msa1138110:CDS 40.0%
CTTGACCCCAAATATTGTTC+TGG + chr7_4:7407071-7407090 Msa1138110:CDS 40.0%
GTCCACCAGAACAATATTTG+GGG - chr7_4:7407079-7407098 None:intergenic 40.0%
GCTCTTGAAGTCTTCAAAGA+TGG + chr7_4:7407227-7407246 Msa1138110:intron 40.0%
AAGTCTTCAAAGATGGGGAA+TGG + chr7_4:7407234-7407253 Msa1138110:intron 40.0%
! GCCAATTCCATATGCTTTTG+TGG + chr7_4:7407268-7407287 Msa1138110:intron 40.0%
!!! CACAACACGATTTTCAAGTC+AGG - chr7_4:7407757-7407776 None:intergenic 40.0%
! CTGACTTGAAAATCGTGTTG+TGG + chr7_4:7407755-7407774 Msa1138110:intron 40.0%
GTGACTCAAAATTAGTGTGC+TGG - chr7_4:7407829-7407848 None:intergenic 40.0%
GACTCATACGTAAGTAGTGA+TGG + chr7_4:7408118-7408137 Msa1138110:intron 40.0%
! GTGAACCGGTTCTACATATA+AGG - chr7_4:7408193-7408212 None:intergenic 40.0%
TGCCTGAATTTGTCACAACA+CGG - chr7_4:7408444-7408463 None:intergenic 40.0%
! GTTTGTTGGACGGATGAAAT+AGG - chr7_4:7408485-7408504 None:intergenic 40.0%
GGTGGTTGCACATACGATAA+AGG - chr7_4:7402307-7402326 None:intergenic 45.0%
GATTTCCGGCAAGATAATCC+CGG + chr7_4:7402354-7402373 Msa1138110:CDS 45.0%
! TTGAGAGCTTCTGAGGAGTA+TGG + chr7_4:7402424-7402443 Msa1138110:CDS 45.0%
TCAACTCCTTGGAAACTCCA+TGG - chr7_4:7402982-7403001 None:intergenic 45.0%
TGGAGTTTCCAAGGAGTTGA+TGG + chr7_4:7402982-7403001 Msa1138110:CDS 45.0%
GAAAGTTCAAGGGACCCTAA+TGG + chr7_4:7403064-7403083 Msa1138110:CDS 45.0%
AGGCATATTTGTCCACCTTC+AGG + chr7_4:7403157-7403176 Msa1138110:intron 45.0%
TCCACCTTCAGGTGAATTCA+TGG + chr7_4:7403168-7403187 Msa1138110:intron 45.0%
TCCATGAATTCACCTGAAGG+TGG - chr7_4:7403172-7403191 None:intergenic 45.0%
! CGGTATCTTGTAGGCTTTTG+TGG - chr7_4:7403202-7403221 None:intergenic 45.0%
CTCCTGAATACTCAAGTCTC+CGG + chr7_4:7404049-7404068 Msa1138110:intron 45.0%
ATCCGGAGACTTGAGTATTC+AGG - chr7_4:7404054-7404073 None:intergenic 45.0%
! CAGTTCAGAAGGGTGGTTTT+AGG + chr7_4:7404294-7404313 Msa1138110:intron 45.0%
CTTCTTGATCTACCGAAGAG+GGG - chr7_4:7404340-7404359 None:intergenic 45.0%
CTAATATGACCCGGTTCAAC+AGG - chr7_4:7404678-7404697 None:intergenic 45.0%
TGTCACGGTTATCCGAAGTT+CGG + chr7_4:7405387-7405406 Msa1138110:intron 45.0%
TTATCCGAAGTTCGGTCATG+AGG + chr7_4:7405395-7405414 Msa1138110:intron 45.0%
CTTACCTCATGACCGAACTT+CGG - chr7_4:7405402-7405421 None:intergenic 45.0%
AAAATCTGACCTAGACCTCG+AGG - chr7_4:7405783-7405802 None:intergenic 45.0%
GAGTCAGAGATGCTTGATTG+TGG + chr7_4:7405870-7405889 Msa1138110:intron 45.0%
CGTACGAAGTATAGCCATGT+GGG - chr7_4:7406629-7406648 None:intergenic 45.0%
ACGTACGAAGTATAGCCATG+TGG - chr7_4:7406630-7406649 None:intergenic 45.0%
GACCCCAAATATTGTTCTGG+TGG + chr7_4:7407074-7407093 Msa1138110:CDS 45.0%
!! GTTAAACTTGGCTCTGGACA+AGG - chr7_4:7407140-7407159 None:intergenic 45.0%
TCCAGAGCCAAGTTTAACCT+TGG + chr7_4:7407142-7407161 Msa1138110:intron 45.0%
CCAGAGCCAAGTTTAACCTT+GGG + chr7_4:7407143-7407162 Msa1138110:intron 45.0%
GGTGTTCCCAAGGTTAAACT+TGG - chr7_4:7407152-7407171 None:intergenic 45.0%
ATCACATATGCTCTTGCGTG+TGG + chr7_4:7408146-7408165 Msa1138110:intron 45.0%
CACCGTGTTGTGACAAATTC+AGG + chr7_4:7408439-7408458 Msa1138110:CDS 45.0%
ACGGATGAAATAGGCAACAG+TGG - chr7_4:7408476-7408495 None:intergenic 45.0%
GAACATGTCAAAGGCTTTGC+TGG - chr7_4:7408523-7408542 None:intergenic 45.0%
!!! ATTTTTTAATTTTTGTATAT+AGG - chr7_4:7402566-7402585 None:intergenic 5.0%
!!! AAATTTAAAACTTTTTTATT+TGG + chr7_4:7403422-7403441 Msa1138110:intron 5.0%
!!! AAATTTAAAACTTTTTTATT+TGG + chr7_4:7403422-7403441 Msa1138110:intron 5.0%
!!! TTATAAGAATTTTATTTTTA+GGG - chr7_4:7407612-7407631 None:intergenic 5.0%
!!! TAAATAAAGTTAAAAAATTT+TGG - chr7_4:7408276-7408295 None:intergenic 5.0%
!! ATAATCCCGGTGGTGGATCT+TGG + chr7_4:7402367-7402386 Msa1138110:CDS 50.0%
!!! GCACGTTTTGAGAGCTTCTG+AGG + chr7_4:7402417-7402436 Msa1138110:CDS 50.0%
CGTCGTCAACGTTGTAGATC+CGG - chr7_4:7404071-7404090 None:intergenic 50.0%
GGCACTAAATCTCCCCTCTT+CGG + chr7_4:7404325-7404344 Msa1138110:intron 50.0%
GAACAAAAGTGGGGACGACT+AGG + chr7_4:7404359-7404378 Msa1138110:intron 50.0%
AAGTGGGGACGACTAGGATT+CGG + chr7_4:7404365-7404384 Msa1138110:intron 50.0%
CTATATGCAACGGTAGGTGG+TGG - chr7_4:7406522-7406541 None:intergenic 50.0%
!! AAACTTGGCTCTGGACAAGG+TGG - chr7_4:7407137-7407156 None:intergenic 50.0%
CCCAAGGTTAAACTTGGCTC+TGG - chr7_4:7407146-7407165 None:intergenic 50.0%
AGGTTAGGATCCCTGTGCTT+GGG - chr7_4:7407173-7407192 None:intergenic 50.0%
AAGGTTAGGATCCCTGTGCT+TGG - chr7_4:7407174-7407193 None:intergenic 50.0%
CAACCACCGGAAAGTAGACC+CGG + chr7_4:7402319-7402338 Msa1138110:CDS 55.0%
TTCCGGCAAGATAATCCCGG+TGG + chr7_4:7402357-7402376 Msa1138110:CDS 55.0%
CACCACCGGGATTATCTTGC+CGG - chr7_4:7402362-7402381 None:intergenic 55.0%
TGACCACCAAGATCCACCAC+CGG - chr7_4:7402376-7402395 None:intergenic 55.0%
CTTGGGAACACCCAAGCACA+GGG + chr7_4:7407160-7407179 Msa1138110:intron 55.0%
ACCGGAAAGTAGACCCGGCA+CGG + chr7_4:7402324-7402343 Msa1138110:CDS 60.0%
GAAATCACAGACGCCGTGCC+GGG - chr7_4:7402340-7402359 None:intergenic 60.0%
GGAAATCACAGACGCCGTGC+CGG - chr7_4:7402341-7402360 None:intergenic 60.0%
GGCACGGCGTCTGTGATTTC+CGG + chr7_4:7402340-7402359 Msa1138110:CDS 60.0%
CGGCAAGATAATCCCGGTGG+TGG + chr7_4:7402360-7402379 Msa1138110:CDS 60.0%
!! ATCCCGGTGGTGGATCTTGG+TGG + chr7_4:7402370-7402389 Msa1138110:CDS 60.0%
GACCACCAAGATCCACCACC+GGG - chr7_4:7402375-7402394 None:intergenic 60.0%
CCTGTGCTTGGGTGTTCCCA+AGG - chr7_4:7407162-7407181 None:intergenic 60.0%
CCTTGGGAACACCCAAGCAC+AGG + chr7_4:7407159-7407178 Msa1138110:intron 60.0%
GTGCCGGGTCTACTTTCCGG+TGG - chr7_4:7402325-7402344 None:intergenic 65.0%
GCCGTGCCGGGTCTACTTTC+CGG - chr7_4:7402328-7402347 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 7402256 7408543 7402256 ID=Msa1138110;Name=Msa1138110
chr7_4 mRNA 7402256 7408543 7402256 ID=Msa1138110-mRNA-1;Parent=Msa1138110;Name=Msa1138110-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0|0|1|0.25|0.2|5|0|219
chr7_4 exon 7402256 7402456 7402256 ID=Msa1138110-mRNA-1:exon:2052;Parent=Msa1138110-mRNA-1
chr7_4 exon 7402971 7403109 7402971 ID=Msa1138110-mRNA-1:exon:2053;Parent=Msa1138110-mRNA-1
chr7_4 exon 7403179 7403221 7403179 ID=Msa1138110-mRNA-1:exon:2054;Parent=Msa1138110-mRNA-1
chr7_4 exon 7406992 7407152 7406992 ID=Msa1138110-mRNA-1:exon:2055;Parent=Msa1138110-mRNA-1
chr7_4 exon 7408431 7408543 7408431 ID=Msa1138110-mRNA-1:exon:2056;Parent=Msa1138110-mRNA-1
chr7_4 CDS 7402256 7402456 7402256 ID=Msa1138110-mRNA-1:cds;Parent=Msa1138110-mRNA-1
chr7_4 CDS 7402971 7403109 7402971 ID=Msa1138110-mRNA-1:cds;Parent=Msa1138110-mRNA-1
chr7_4 CDS 7403179 7403221 7403179 ID=Msa1138110-mRNA-1:cds;Parent=Msa1138110-mRNA-1
chr7_4 CDS 7406992 7407152 7406992 ID=Msa1138110-mRNA-1:cds;Parent=Msa1138110-mRNA-1
chr7_4 CDS 7408431 7408543 7408431 ID=Msa1138110-mRNA-1:cds;Parent=Msa1138110-mRNA-1
Gene Sequence

>Msa1138110

ATGGATAACATGCTTGTCTCTAGTTGGTTTCATCTTCATTCAACTGTGCCTTTATCGTATGTGCAACCACCGGAAAGTAGACCCGGCACGGCGTCTGTGATTTCCGGCAAGATAATCCCGGTGGTGGATCTTGGTGGTCATGATCATGCTGAAACATTACTGCACGTTTTGAGAGCTTCTGAGGAGTATGGATTTTTCCAGGTTGTTAACCATGGAGTTTCCAAGGAGTTGATGGATGATACAATGAACATTTTCAAGGAATTTCATGCCATGCCTGAATTAGAAAAGATAAGTGAAAGTTCAAGGGACCCTAATGGAAGTTGTAGACTCTATACAAGTCGTGAATTCATGGAGTTTTGGCCACAAAAGCCTACAAGATACCGTGAAATAGTTGCAAAATATACACAAGAAATGAGAGCACTGGGACTTAAAATATTGGAGTTGATATGTGAAGGGTTAGGACTTGACCCCAAATATTGTTCTGGTGGACTTAGTGAAAGTCCATTATTGTTAGGGCATCACTATCCACCTTGTCCAGAGCCAAGAGCAGAGCACCGTGTTGTGACAAATTCAGGCACTGCAAGAACCACTGTTGCCTATTTCATCCGTCCAACAAACGATAATATCATAGAACCAGCAAAGCCTTTGACATGTTCT
Protein sequence

>Msa1138110

MDNMLVSSWFHLHSTVPLSYVQPPESRPGTASVISGKIIPVVDLGGHDHAETLLHVLRASEEYGFFQVVNHGVSKELMDDTMNIFKEFHAMPELEKISESSRDPNGSCRLYTSREFMEFWPQKPTRYREIVAKYTQEMRALGLKILELICEGLGLDPKYCSGGLSESPLLLGHHYPPCPEPRAEHRVVTNSGTARTTVAYFIRPTNDNIIEPAKPLTCS