AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1458270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1458270 MtrunA17_Chr1g0178931 94.937 237 12 0 1 237 112 348 7.27e-170 471
Msa1458270 MtrunA17_Chr1g0178941 78.189 243 47 2 1 237 117 359 6.89e-140 396
Msa1458270 MtrunA17_Chr1g0178961 78.995 219 45 1 20 237 1 219 2.49e-128 361
Msa1458270 MtrunA17_Chr7g0266061 62.609 230 84 2 1 228 116 345 1.34e-107 314
Msa1458270 MtrunA17_Chr1g0198381 48.718 234 113 3 1 228 72 304 1.57e-77 236
Msa1458270 MtrunA17_Chr1g0198351 41.631 233 130 2 1 228 113 344 4.59e-66 208
Msa1458270 MtrunA17_Chr1g0198401 40.496 242 138 2 1 237 31 271 9.20e-66 204
Msa1458270 MtrunA17_Chr1g0198391 40.000 235 126 4 1 228 128 354 1.16e-58 189
Msa1458270 MtrunA17_Chr1g0198361 42.636 129 70 3 37 162 3 130 4.84e-28 105
Msa1458270 MtrunA17_Chr8g0349321 28.205 234 145 8 1 219 113 338 2.49e-20 88.2
Msa1458270 MtrunA17_Chr2g0301641 26.609 233 152 8 1 217 119 348 6.67e-20 87.4
Msa1458270 MtrunA17_Chr8g0344941 26.860 242 159 9 1 227 117 355 1.33e-18 83.6
Msa1458270 MtrunA17_Chr3g0131321 27.049 244 137 11 1 218 113 341 2.50e-17 80.1
Msa1458270 MtrunA17_Chr7g0275291 26.425 193 125 5 41 218 160 350 1.32e-16 77.8
Msa1458270 MtrunA17_Chr3g0099151 24.066 241 161 7 1 227 171 403 4.35e-16 76.6
Msa1458270 MtrunA17_Chr5g0438631 26.587 252 151 11 3 232 108 347 1.29e-15 75.1
Msa1458270 MtrunA17_Chr8g0349341 25.630 238 154 8 1 223 113 342 1.50e-15 74.7
Msa1458270 MtrunA17_Chr3g0077581 27.500 240 143 9 1 217 111 342 2.03e-15 74.3
Msa1458270 MtrunA17_Chr5g0437421 23.111 225 148 6 19 225 131 348 3.64e-15 73.6
Msa1458270 MtrunA17_Chr3g0099231 22.594 239 166 7 1 227 111 342 6.01e-15 73.2
Msa1458270 MtrunA17_Chr8g0347751 24.352 193 125 5 41 219 173 358 1.12e-14 72.4
Msa1458270 MtrunA17_Chr5g0434621 25.726 241 155 10 1 226 103 334 2.58e-14 71.2
Msa1458270 MtrunA17_Chr3g0099161 22.407 241 164 8 1 227 176 407 4.08e-14 70.9
Msa1458270 MtrunA17_Chr1g0189901 24.498 249 152 10 2 227 109 344 5.85e-14 70.1
Msa1458270 MtrunA17_Chr8g0349301 27.488 211 134 7 1 198 112 316 6.74e-14 69.7
Msa1458270 MtrunA17_Chr7g0215961 23.577 246 158 9 2 227 98 333 3.69e-13 67.8
Msa1458270 MtrunA17_Chr1g0189891 25.692 253 138 14 2 227 108 337 1.25e-12 66.2
Msa1458270 MtrunA17_Chr7g0275001 22.266 256 166 11 2 235 103 347 2.39e-12 65.5
Msa1458270 MtrunA17_Chr1g0156911 24.803 254 161 10 1 237 115 355 3.22e-12 65.1
Msa1458270 MtrunA17_Chr7g0254461 23.153 203 138 5 41 227 175 375 3.60e-12 65.1
Msa1458270 MtrunA17_Chr8g0374101 22.407 241 155 10 1 218 117 348 3.96e-12 65.1
Msa1458270 MtrunA17_Chr6g0457921 22.541 244 163 9 2 227 108 343 5.02e-12 64.7
Msa1458270 MtrunA17_Chr8g0381581 22.660 203 139 5 41 227 171 371 5.47e-12 64.7
Msa1458270 MtrunA17_Chr7g0275011 24.051 237 148 10 2 217 112 337 6.15e-12 64.3
Msa1458270 MtrunA17_Chr2g0294301 24.370 238 155 9 1 219 110 341 9.24e-12 63.9
Msa1458270 MtrunA17_Chr1g0156931 21.429 252 173 10 1 236 119 361 9.31e-12 63.9
Msa1458270 MtrunA17_Chr4g0060811 21.138 246 170 8 1 230 106 343 1.43e-11 63.2
Msa1458270 MtrunA17_Chr2g0283191 25.000 248 153 11 1 224 119 357 1.45e-11 63.2
Msa1458270 MtrunA17_Chr4g0057991 25.229 218 148 6 19 225 144 357 1.51e-11 63.2
Msa1458270 MtrunA17_Chr4g0068441 26.744 258 156 12 1 235 110 357 1.89e-11 62.8
Msa1458270 MtrunA17_Chr3g0142921 24.118 170 117 5 69 234 195 356 2.18e-11 62.8
Msa1458270 MtrunA17_Chr4g0008851 22.650 234 157 8 2 217 110 337 3.35e-11 62.4
Msa1458270 MtrunA17_Chr1g0156891 24.898 245 158 10 3 230 124 359 3.95e-11 62.0
Msa1458270 MtrunA17_Chr2g0285001 24.607 191 121 8 41 223 160 335 7.22e-11 61.2
Msa1458270 MtrunA17_Chr1g0159971 22.000 200 141 5 41 227 178 375 9.70e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1458270 AT5G03610.1 54.274 234 101 3 1 229 118 350 4.14e-86 260
Msa1458270 AT3G09930.2 45.957 235 120 4 1 229 114 347 2.25e-71 222
Msa1458270 AT3G09930.1 45.957 235 120 4 1 229 114 347 2.25e-71 222
Msa1458270 AT5G03600.1 37.712 236 128 7 1 227 86 311 7.85e-48 160
Msa1458270 AT5G03600.2 37.712 236 128 7 1 227 121 346 1.71e-47 160
Msa1458270 AT2G36325.1 35.043 234 139 7 1 227 123 350 2.46e-43 150
Msa1458270 AT5G03590.3 33.191 235 110 7 1 229 60 253 5.66e-39 136
Msa1458270 AT5G03590.1 31.878 229 109 7 7 229 35 222 1.19e-34 124
Msa1458270 AT1G53920.1 27.642 246 158 9 1 231 125 365 3.42e-20 88.6
Msa1458270 AT1G28640.1 27.572 243 149 8 1 218 112 352 2.58e-18 83.2
Msa1458270 AT5G41890.1 27.686 242 148 9 1 219 111 348 3.16e-17 80.1
Msa1458270 AT1G20130.1 27.439 164 113 4 70 233 373 530 6.57e-16 76.6
Msa1458270 AT1G20130.2 27.439 164 113 4 70 233 353 510 7.49e-16 76.6
Msa1458270 AT5G08460.1 27.442 215 136 9 19 218 148 357 2.00e-15 75.1
Msa1458270 AT1G71691.1 26.066 211 130 7 19 217 57 253 2.59e-15 73.9
Msa1458270 AT1G71691.2 26.066 211 130 7 19 217 158 354 4.60e-15 73.9
Msa1458270 AT1G28670.1 24.597 248 161 6 1 223 112 358 6.13e-15 73.6
Msa1458270 AT2G04570.1 25.000 204 137 6 41 236 155 350 8.46e-15 73.2
Msa1458270 AT1G54030.1 25.112 223 146 6 2 217 126 334 4.48e-14 71.2
Msa1458270 AT1G06990.1 24.506 253 157 8 3 233 117 357 4.63e-14 70.9
Msa1458270 AT1G28650.1 25.221 226 140 8 19 223 142 359 5.30e-14 70.9
Msa1458270 AT5G18430.1 26.068 234 148 9 2 217 107 333 6.99e-14 70.5
Msa1458270 AT1G33811.1 25.403 248 138 11 2 217 110 342 9.17e-14 70.1
Msa1458270 AT1G71250.1 25.837 209 135 9 19 217 146 344 2.49e-13 68.9
Msa1458270 AT5G37690.2 23.176 233 158 8 1 219 97 322 2.93e-13 68.6
Msa1458270 AT2G27360.1 23.858 197 128 4 42 223 167 356 3.22e-13 68.6
Msa1458270 AT5G37690.1 23.176 233 158 8 1 219 105 330 3.61e-13 68.2
Msa1458270 AT1G54020.1 25.764 229 151 8 2 222 22 239 1.24e-12 66.2
Msa1458270 AT1G54020.5 25.764 229 151 8 2 222 22 239 1.24e-12 66.2
Msa1458270 AT1G54020.3 25.764 229 151 8 2 222 22 239 1.24e-12 66.2
Msa1458270 AT4G01130.3 26.562 192 124 5 43 219 81 270 1.93e-12 65.9
Msa1458270 AT4G01130.1 26.425 193 125 5 41 218 165 355 2.30e-12 66.2
Msa1458270 AT1G54020.2 25.764 229 151 8 2 222 108 325 3.60e-12 65.5
Msa1458270 AT2G40250.1 24.096 249 150 10 1 223 114 349 4.67e-12 65.1
Msa1458270 AT3G53100.1 23.047 256 162 11 2 235 108 350 4.73e-12 65.1
Msa1458270 AT3G14210.2 26.761 213 129 9 36 237 17 213 9.04e-12 63.5
Msa1458270 AT1G54010.1 26.570 207 136 9 20 217 129 328 9.69e-12 64.3
Msa1458270 AT5G33370.1 23.171 246 159 11 2 227 108 343 1.02e-11 64.3
Msa1458270 AT2G19060.1 24.242 231 153 9 1 219 105 325 1.15e-11 63.9
Msa1458270 AT5G55050.1 20.635 252 172 8 1 234 123 364 1.20e-11 63.9
Msa1458270 AT2G24560.1 23.116 199 136 7 41 230 162 352 1.56e-11 63.5
Msa1458270 AT1G59406.1 22.745 255 163 11 1 235 108 348 2.06e-11 63.2
Msa1458270 AT1G59030.1 22.745 255 163 11 1 235 108 348 2.06e-11 63.2
Msa1458270 AT1G58725.1 22.745 255 163 11 1 235 108 348 2.06e-11 63.2
Msa1458270 AT3G14225.2 25.108 231 158 8 1 217 115 344 2.25e-11 63.2
Msa1458270 AT2G23540.1 23.237 241 153 10 1 218 128 359 2.51e-11 63.2
Msa1458270 AT3G50400.1 21.162 241 161 8 1 219 114 347 2.68e-11 62.8
Msa1458270 AT3G14210.1 26.761 213 129 9 36 237 145 341 2.81e-11 62.8
Msa1458270 AT4G28780.1 25.984 254 158 11 2 235 109 352 3.59e-11 62.4
Msa1458270 AT1G75890.1 27.972 143 92 4 85 223 235 370 4.30e-11 62.4
Msa1458270 AT1G75890.3 28.169 142 91 4 86 223 252 386 4.32e-11 62.4
Msa1458270 AT1G75890.2 28.369 141 90 4 85 221 222 355 4.49e-11 62.4
Msa1458270 AT5G45950.1 23.737 198 136 5 41 235 166 351 6.03e-11 62.0
Msa1458270 AT1G75880.1 26.490 151 104 4 86 234 228 373 7.99e-11 61.6
Msa1458270 AT1G75880.2 26.490 151 104 4 86 234 227 372 8.68e-11 61.6

Find 66 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAACGATCCTTGATATTA+TGG 0.176436 tig0039509:+21116 Msa1458270:intergenic
TCGATTTGAGTTGTCATATT+TGG 0.176525 tig0039509:+21709 Msa1458270:intergenic
TGGTGTGATCCTTGGCTTCT+TGG 0.198536 tig0039509:+21197 Msa1458270:intergenic
ATCCGGAATCAAGTTTCTTT+TGG 0.200030 tig0039509:-21009 Msa1458270:CDS
ATACAAAGAAGCCAAGTTTA+AGG 0.227648 tig0039509:+20812 Msa1458270:intergenic
AAATAATGTTAAGAAATATT+TGG 0.229415 tig0039509:-21041 Msa1458270:CDS
CTTGGCTTCTTGGTTCAATT+TGG 0.230503 tig0039509:+21207 Msa1458270:intergenic
AACAAAATGATGCAAATAAA+TGG 0.273261 tig0039509:+20881 Msa1458270:intergenic
CACCAATCCCTCACAAATTC+AGG 0.309817 tig0039509:-21816 Msa1458270:five_prime_UTR
TTCTCTTAAATCCTATGCTT+TGG 0.312836 tig0039509:+21359 Msa1458270:intergenic
CCGTATTTCAAATAATGTTT+AGG 0.330993 tig0039509:+21784 Msa1458270:intergenic
TATAGCTCTAGTACAAAATA+TGG 0.336494 tig0039509:+20918 Msa1458270:intergenic
ATTGGTTCAATAGGTTGTTA+TGG 0.348306 tig0039509:+21236 Msa1458270:intergenic
CCTAAACATTATTTGAAATA+CGG 0.358872 tig0039509:-21784 Msa1458270:five_prime_UTR
ATTGCTTATGTCTCTGTTGC+TGG 0.376749 tig0039509:-21628 Msa1458270:CDS
TGGTCACGGATTGGTTCAAT+AGG 0.406353 tig0039509:+21227 Msa1458270:intergenic
TCCCAAAAGAAACTTGATTC+CGG 0.406703 tig0039509:+21007 Msa1458270:intergenic
GTATTTGATACATTTACTTC+AGG 0.408426 tig0039509:-21733 Msa1458270:CDS
CATTCCATCCAGCTTGTGTT+GGG 0.422271 tig0039509:+20975 Msa1458270:intergenic
TCCTTGATATTATGGCTTGA+AGG 0.432887 tig0039509:+21124 Msa1458270:intergenic
TGTTAAGTTATCCTTAAACT+TGG 0.433185 tig0039509:-20823 Msa1458270:three_prime_UTR
TTCTTGAATGACTTGGTTGA+AGG 0.435573 tig0039509:+21684 Msa1458270:intergenic
AATCATTACTTGGCCACAAA+TGG 0.467719 tig0039509:-21595 Msa1458270:CDS
CTAAACATTATTTGAAATAC+GGG 0.470412 tig0039509:-21783 Msa1458270:five_prime_UTR
TACATGTGATTTCCTTTCAA+AGG 0.470958 tig0039509:-20786 Msa1458270:three_prime_UTR
GGATTTAAGAGAATTGTTGT+AGG 0.471266 tig0039509:-21349 Msa1458270:CDS
GCATTCCATCCAGCTTGTGT+TGG 0.477061 tig0039509:+20974 Msa1458270:intergenic
GGTTCAATTTGGTCACGGAT+TGG 0.479693 tig0039509:+21218 Msa1458270:intergenic
TTCTTGGTTCAATTTGGTCA+CGG 0.488512 tig0039509:+21213 Msa1458270:intergenic
AACTTTGCATATGGTGGTAC+AGG 0.496157 tig0039509:-21757 Msa1458270:CDS
AAATGACTACAATCATTACT+TGG 0.497754 tig0039509:-21605 Msa1458270:CDS
TGATCTCAATCTCAAATACT+TGG 0.498148 tig0039509:+21837 None:intergenic
TGTAAAGGTGGTGTGATCCT+TGG 0.506168 tig0039509:+21189 None:intergenic
CTGCTTACTCCCGCGCAACA+TGG 0.506554 tig0039509:+21091 None:intergenic
ATAATAACGTTACATTTATG+TGG 0.507089 tig0039509:-21865 None:intergenic
TACGGGATGAACTTTGCATA+TGG 0.509580 tig0039509:-21766 Msa1458270:exon
TTCCTGAATTTGTGAGGGAT+TGG 0.510692 tig0039509:+21814 Msa1458270:intergenic
TATAATGAGTTGGAGAAGAA+AGG 0.513061 tig0039509:-20947 Msa1458270:CDS
CCTTGATATTATGGCTTGAA+GGG 0.516932 tig0039509:+21125 Msa1458270:intergenic
ACAACTGAAGCAATGAAAGA+TGG 0.522350 tig0039509:+21412 Msa1458270:intergenic
GGATTGCACCCAACACAAGC+TGG 0.525339 tig0039509:-20983 Msa1458270:CDS
GGCCACAAATGGCTCTCTCC+CGG 0.526173 tig0039509:-21584 Msa1458270:intron
CCCTTCAAGCCATAATATCA+AGG 0.529260 tig0039509:-21125 Msa1458270:CDS
TCCACATTACATCCTTTGAA+AGG 0.529983 tig0039509:+20774 Msa1458270:intergenic
TTGATTCATCTCCAAAGCAT+AGG 0.533822 tig0039509:-21370 Msa1458270:CDS
TACCGGGAGAGAGCCATTTG+TGG 0.536907 tig0039509:+21582 Msa1458270:intergenic
CGTTTGAAGCCATGTTGCGC+GGG 0.546388 tig0039509:-21100 Msa1458270:CDS
CAATGTTCCTGAATTTGTGA+GGG 0.549183 tig0039509:+21809 Msa1458270:intergenic
TGATATTATGGCTTGAAGGG+TGG 0.554035 tig0039509:+21128 Msa1458270:intergenic
GTAAGCAGTCAGTATAATTG+TGG 0.561837 tig0039509:-21076 Msa1458270:CDS
GCTTTGGAGATGAATCAAAT+CGG 0.568789 tig0039509:+21375 Msa1458270:intergenic
TGAATGTACTATTGCAACGT+TGG 0.572848 tig0039509:+21275 Msa1458270:intergenic
GAATGCTGTATATAATGAGT+TGG 0.576438 tig0039509:-20957 Msa1458270:CDS
TCCTTTCAAAGGATGTAATG+TGG 0.580302 tig0039509:-20775 Msa1458270:three_prime_UTR
TCGTTTGAAGCCATGTTGCG+CGG 0.583492 tig0039509:-21101 Msa1458270:CDS
TGCACCCAACACAAGCTGGA+TGG 0.589106 tig0039509:-20979 Msa1458270:CDS
CAAATTGAACCAAGAAGCCA+AGG 0.595369 tig0039509:-21206 Msa1458270:CDS
ACAATGTTCCTGAATTTGTG+AGG 0.612556 tig0039509:+21808 Msa1458270:intergenic
AATGTCTAGAATTGTAAAGG+TGG 0.614447 tig0039509:+21177 Msa1458270:intergenic
GAGGATTGAGCAGTGGTCTG+AGG 0.625641 tig0039509:+21301 Msa1458270:intergenic
GGGATGAACTTTGCATATGG+TGG 0.628835 tig0039509:-21763 Msa1458270:CDS
GTAGGTGCTTTACAACCACT+TGG 0.634865 tig0039509:-21331 Msa1458270:CDS
ACTATTGCAACGTTGGAACG+AGG 0.664844 tig0039509:+21282 Msa1458260:intergenic
TTGGAACGAGGATTGAGCAG+TGG 0.684303 tig0039509:+21294 Msa1458260:intergenic
GTCTGAGGAAGACATCCAAG+TGG 0.739269 tig0039509:+21316 Msa1458260:intergenic
GGTTGTTATGGAGAGCTACG+AGG 0.763965 tig0039509:+21248 Msa1458260:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAATGAATTAATTTAC+CGG + tig0039509:21041-21060 Msa1458270:intergenic 10.0%
!!! AATTCTATTTTTATTAATAG+AGG + tig0039509:21088-21107 Msa1458270:intergenic 10.0%
!! AAATAATGTTAAGAAATATT+TGG - tig0039509:21562-21581 Msa1458270:intron 10.0%
!! ATTAAAATGAATTAATTTAC+CGG + tig0039509:21041-21060 Msa1458270:intergenic 10.0%
!!! AATTCTATTTTTATTAATAG+AGG + tig0039509:21088-21107 Msa1458270:intergenic 10.0%
!! AAATAATGTTAAGAAATATT+TGG - tig0039509:21562-21581 Msa1458270:intron 10.0%
!! TTAAAATGAATTAATTTACC+GGG + tig0039509:21040-21059 Msa1458270:intergenic 15.0%
!! TTAAAATGAATTAATTTACC+GGG + tig0039509:21040-21059 Msa1458270:intergenic 15.0%
!!! CCTAAACATTATTTGAAATA+CGG - tig0039509:20819-20838 Msa1458270:three_prime_UTR 20.0%
!!! CTAAACATTATTTGAAATAC+GGG - tig0039509:20820-20839 Msa1458270:three_prime_UTR 20.0%
!!! TTAATTCATTTTAATCAGAG+CGG - tig0039509:21046-21065 Msa1458270:CDS 20.0%
!!! TTTTGTTAAAATTCATGTAG+AGG + tig0039509:21145-21164 Msa1458270:intergenic 20.0%
!!! AAAAATGTCTAGAATTGTAA+AGG + tig0039509:21432-21451 Msa1458270:intergenic 20.0%
!!! ATATTTGGTTTGTAAAAATC+CGG - tig0039509:21577-21596 Msa1458270:intron 20.0%
!! AACAAAATGATGCAAATAAA+TGG + tig0039509:21725-21744 Msa1458270:intergenic 20.0%
!!! ATTTTGTTTCTTGTCTAATA+AGG - tig0039509:21737-21756 Msa1458270:CDS 20.0%
!!! CCTAAACATTATTTGAAATA+CGG - tig0039509:20819-20838 Msa1458270:three_prime_UTR 20.0%
!!! CTAAACATTATTTGAAATAC+GGG - tig0039509:20820-20839 Msa1458270:three_prime_UTR 20.0%
!!! TTAATTCATTTTAATCAGAG+CGG - tig0039509:21046-21065 Msa1458270:CDS 20.0%
!!! TTTTGTTAAAATTCATGTAG+AGG + tig0039509:21145-21164 Msa1458270:intergenic 20.0%
!!! AAAAATGTCTAGAATTGTAA+AGG + tig0039509:21432-21451 Msa1458270:intergenic 20.0%
!!! ATATTTGGTTTGTAAAAATC+CGG - tig0039509:21577-21596 Msa1458270:intron 20.0%
!! AACAAAATGATGCAAATAAA+TGG + tig0039509:21725-21744 Msa1458270:intergenic 20.0%
!!! ATTTTGTTTCTTGTCTAATA+AGG - tig0039509:21737-21756 Msa1458270:CDS 20.0%
! CCGTATTTCAAATAATGTTT+AGG + tig0039509:20822-20841 Msa1458270:intergenic 25.0%
! GTATTTGATACATTTACTTC+AGG - tig0039509:20870-20889 Msa1458270:three_prime_UTR 25.0%
! AAATGACTACAATCATTACT+TGG - tig0039509:20998-21017 Msa1458270:CDS 25.0%
!!! TATAGCTCTAGTACAAAATA+TGG + tig0039509:21688-21707 Msa1458270:intergenic 25.0%
! TGTTAAGTTATCCTTAAACT+TGG - tig0039509:21780-21799 Msa1458270:exon 25.0%
! CCGTATTTCAAATAATGTTT+AGG + tig0039509:20822-20841 Msa1458270:intergenic 25.0%
! GTATTTGATACATTTACTTC+AGG - tig0039509:20870-20889 Msa1458270:three_prime_UTR 25.0%
! AAATGACTACAATCATTACT+TGG - tig0039509:20998-21017 Msa1458270:CDS 25.0%
!!! TATAGCTCTAGTACAAAATA+TGG + tig0039509:21688-21707 Msa1458270:intergenic 25.0%
! TGTTAAGTTATCCTTAAACT+TGG - tig0039509:21780-21799 Msa1458270:exon 25.0%
TGATCTCAATCTCAAATACT+TGG + tig0039509:20769-20788 None:intergenic 30.0%
!! TCGATTTGAGTTGTCATATT+TGG + tig0039509:20897-20916 Msa1458270:intergenic 30.0%
! AGACATTTTCTTGAATGACT+TGG + tig0039509:20929-20948 Msa1458270:intergenic 30.0%
AATAATTTCGTTTGATACGC+AGG - tig0039509:21163-21182 Msa1458270:CDS 30.0%
ATAATTTCGTTTGATACGCA+GGG - tig0039509:21164-21183 Msa1458270:CDS 30.0%
TTCTCTTAAATCCTATGCTT+TGG + tig0039509:21247-21266 Msa1458270:intergenic 30.0%
GGATTTAAGAGAATTGTTGT+AGG - tig0039509:21254-21273 Msa1458270:CDS 30.0%
! ATTGGTTCAATAGGTTGTTA+TGG + tig0039509:21370-21389 Msa1458270:intergenic 30.0%
! AATGTCTAGAATTGTAAAGG+TGG + tig0039509:21429-21448 Msa1458270:intergenic 30.0%
TCAAACGATCCTTGATATTA+TGG + tig0039509:21490-21509 Msa1458270:intergenic 30.0%
GAATGCTGTATATAATGAGT+TGG - tig0039509:21646-21665 Msa1458270:CDS 30.0%
! TATAATGAGTTGGAGAAGAA+AGG - tig0039509:21656-21675 Msa1458270:CDS 30.0%
ATACAAAGAAGCCAAGTTTA+AGG + tig0039509:21794-21813 Msa1458270:intergenic 30.0%
TACATGTGATTTCCTTTCAA+AGG - tig0039509:21817-21836 Msa1458270:five_prime_UTR 30.0%
TGATCTCAATCTCAAATACT+TGG + tig0039509:20769-20788 Msa1458270:intergenic 30.0%
!! TCGATTTGAGTTGTCATATT+TGG + tig0039509:20897-20916 Msa1458270:intergenic 30.0%
! AGACATTTTCTTGAATGACT+TGG + tig0039509:20929-20948 Msa1458270:intergenic 30.0%
AATAATTTCGTTTGATACGC+AGG - tig0039509:21163-21182 Msa1458270:CDS 30.0%
ATAATTTCGTTTGATACGCA+GGG - tig0039509:21164-21183 Msa1458270:CDS 30.0%
TTCTCTTAAATCCTATGCTT+TGG + tig0039509:21247-21266 Msa1458270:intergenic 30.0%
GGATTTAAGAGAATTGTTGT+AGG - tig0039509:21254-21273 Msa1458270:CDS 30.0%
! ATTGGTTCAATAGGTTGTTA+TGG + tig0039509:21370-21389 Msa1458270:intergenic 30.0%
! AATGTCTAGAATTGTAAAGG+TGG + tig0039509:21429-21448 Msa1458270:intergenic 30.0%
TCAAACGATCCTTGATATTA+TGG + tig0039509:21490-21509 Msa1458270:intergenic 30.0%
GAATGCTGTATATAATGAGT+TGG - tig0039509:21646-21665 Msa1458270:CDS 30.0%
! TATAATGAGTTGGAGAAGAA+AGG - tig0039509:21656-21675 Msa1458270:CDS 30.0%
ATACAAAGAAGCCAAGTTTA+AGG + tig0039509:21794-21813 Msa1458270:intergenic 30.0%
TACATGTGATTTCCTTTCAA+AGG - tig0039509:21817-21836 Msa1458270:five_prime_UTR 30.0%
CAATGTTCCTGAATTTGTGA+GGG + tig0039509:20797-20816 Msa1458270:intergenic 35.0%
ACAATGTTCCTGAATTTGTG+AGG + tig0039509:20798-20817 Msa1458270:intergenic 35.0%
!! TTCTTGAATGACTTGGTTGA+AGG + tig0039509:20922-20941 Msa1458270:intergenic 35.0%
AATCATTACTTGGCCACAAA+TGG - tig0039509:21008-21027 Msa1458270:CDS 35.0%
ACAACTGAAGCAATGAAAGA+TGG + tig0039509:21194-21213 Msa1458270:intergenic 35.0%
!! GCTTTGGAGATGAATCAAAT+CGG + tig0039509:21231-21250 Msa1458270:intergenic 35.0%
TTGATTCATCTCCAAAGCAT+AGG - tig0039509:21233-21252 Msa1458270:CDS 35.0%
TGAATGTACTATTGCAACGT+TGG + tig0039509:21331-21350 Msa1458270:intergenic 35.0%
TTCTTGGTTCAATTTGGTCA+CGG + tig0039509:21393-21412 Msa1458270:intergenic 35.0%
CCTTGATATTATGGCTTGAA+GGG + tig0039509:21481-21500 Msa1458270:intergenic 35.0%
TCCTTGATATTATGGCTTGA+AGG + tig0039509:21482-21501 Msa1458270:intergenic 35.0%
GTAAGCAGTCAGTATAATTG+TGG - tig0039509:21527-21546 Msa1458270:intron 35.0%
! ATCCGGAATCAAGTTTCTTT+TGG - tig0039509:21594-21613 Msa1458270:CDS 35.0%
! TCCGGAATCAAGTTTCTTTT+GGG - tig0039509:21595-21614 Msa1458270:CDS 35.0%
TCCCAAAAGAAACTTGATTC+CGG + tig0039509:21599-21618 Msa1458270:intergenic 35.0%
!! GAATCAAGTTTCTTTTGGGA+TGG - tig0039509:21599-21618 Msa1458270:CDS 35.0%
TCCTTTCAAAGGATGTAATG+TGG - tig0039509:21828-21847 Msa1458270:five_prime_UTR 35.0%
TCCACATTACATCCTTTGAA+AGG + tig0039509:21832-21851 Msa1458270:intergenic 35.0%
CAATGTTCCTGAATTTGTGA+GGG + tig0039509:20797-20816 Msa1458270:intergenic 35.0%
ACAATGTTCCTGAATTTGTG+AGG + tig0039509:20798-20817 Msa1458270:intergenic 35.0%
!! TTCTTGAATGACTTGGTTGA+AGG + tig0039509:20922-20941 Msa1458270:intergenic 35.0%
AATCATTACTTGGCCACAAA+TGG - tig0039509:21008-21027 Msa1458270:CDS 35.0%
ACAACTGAAGCAATGAAAGA+TGG + tig0039509:21194-21213 Msa1458270:intergenic 35.0%
!! GCTTTGGAGATGAATCAAAT+CGG + tig0039509:21231-21250 Msa1458270:intergenic 35.0%
TTGATTCATCTCCAAAGCAT+AGG - tig0039509:21233-21252 Msa1458270:CDS 35.0%
TGAATGTACTATTGCAACGT+TGG + tig0039509:21331-21350 Msa1458270:intergenic 35.0%
TTCTTGGTTCAATTTGGTCA+CGG + tig0039509:21393-21412 Msa1458270:intergenic 35.0%
CCTTGATATTATGGCTTGAA+GGG + tig0039509:21481-21500 Msa1458270:intergenic 35.0%
TCCTTGATATTATGGCTTGA+AGG + tig0039509:21482-21501 Msa1458270:intergenic 35.0%
GTAAGCAGTCAGTATAATTG+TGG - tig0039509:21527-21546 Msa1458270:intron 35.0%
! ATCCGGAATCAAGTTTCTTT+TGG - tig0039509:21594-21613 Msa1458270:CDS 35.0%
! TCCGGAATCAAGTTTCTTTT+GGG - tig0039509:21595-21614 Msa1458270:CDS 35.0%
TCCCAAAAGAAACTTGATTC+CGG + tig0039509:21599-21618 Msa1458270:intergenic 35.0%
!! GAATCAAGTTTCTTTTGGGA+TGG - tig0039509:21599-21618 Msa1458270:CDS 35.0%
TCCTTTCAAAGGATGTAATG+TGG - tig0039509:21828-21847 Msa1458270:five_prime_UTR 35.0%
TCCACATTACATCCTTTGAA+AGG + tig0039509:21832-21851 Msa1458270:intergenic 35.0%
TTCCTGAATTTGTGAGGGAT+TGG + tig0039509:20792-20811 Msa1458270:intergenic 40.0%
TACGGGATGAACTTTGCATA+TGG - tig0039509:20837-20856 Msa1458270:three_prime_UTR 40.0%
AACTTTGCATATGGTGGTAC+AGG - tig0039509:20846-20865 Msa1458270:three_prime_UTR 40.0%
ATTGCTTATGTCTCTGTTGC+TGG - tig0039509:20975-20994 Msa1458270:CDS 40.0%
CTTGGCTTCTTGGTTCAATT+TGG + tig0039509:21399-21418 Msa1458270:intergenic 40.0%
CAAATTGAACCAAGAAGCCA+AGG - tig0039509:21397-21416 Msa1458270:CDS 40.0%
TGATATTATGGCTTGAAGGG+TGG + tig0039509:21478-21497 Msa1458270:intergenic 40.0%
CCCTTCAAGCCATAATATCA+AGG - tig0039509:21478-21497 Msa1458270:intron 40.0%
TTCCTGAATTTGTGAGGGAT+TGG + tig0039509:20792-20811 Msa1458270:intergenic 40.0%
TACGGGATGAACTTTGCATA+TGG - tig0039509:20837-20856 Msa1458270:three_prime_UTR 40.0%
AACTTTGCATATGGTGGTAC+AGG - tig0039509:20846-20865 Msa1458270:three_prime_UTR 40.0%
ATTGCTTATGTCTCTGTTGC+TGG - tig0039509:20975-20994 Msa1458270:CDS 40.0%
CTTGGCTTCTTGGTTCAATT+TGG + tig0039509:21399-21418 Msa1458270:intergenic 40.0%
CAAATTGAACCAAGAAGCCA+AGG - tig0039509:21397-21416 Msa1458270:CDS 40.0%
TGATATTATGGCTTGAAGGG+TGG + tig0039509:21478-21497 Msa1458270:intergenic 40.0%
CCCTTCAAGCCATAATATCA+AGG - tig0039509:21478-21497 Msa1458270:intron 40.0%
CACCAATCCCTCACAAATTC+AGG - tig0039509:20787-20806 Msa1458270:three_prime_UTR 45.0%
GGGATGAACTTTGCATATGG+TGG - tig0039509:20840-20859 Msa1458270:three_prime_UTR 45.0%
GTAGGTGCTTTACAACCACT+TGG - tig0039509:21272-21291 Msa1458270:CDS 45.0%
ACTATTGCAACGTTGGAACG+AGG + tig0039509:21324-21343 Msa1458270:intergenic 45.0%
!! TGGTCACGGATTGGTTCAAT+AGG + tig0039509:21379-21398 Msa1458270:intergenic 45.0%
GGTTCAATTTGGTCACGGAT+TGG + tig0039509:21388-21407 Msa1458270:intergenic 45.0%
TGTAAAGGTGGTGTGATCCT+TGG + tig0039509:21417-21436 Msa1458270:intergenic 45.0%
CATTCCATCCAGCTTGTGTT+GGG + tig0039509:21631-21650 Msa1458270:intergenic 45.0%
CACCAATCCCTCACAAATTC+AGG - tig0039509:20787-20806 Msa1458270:three_prime_UTR 45.0%
GGGATGAACTTTGCATATGG+TGG - tig0039509:20840-20859 Msa1458270:three_prime_UTR 45.0%
GTAGGTGCTTTACAACCACT+TGG - tig0039509:21272-21291 Msa1458270:CDS 45.0%
ACTATTGCAACGTTGGAACG+AGG + tig0039509:21324-21343 Msa1458270:intergenic 45.0%
!! TGGTCACGGATTGGTTCAAT+AGG + tig0039509:21379-21398 Msa1458270:intergenic 45.0%
GGTTCAATTTGGTCACGGAT+TGG + tig0039509:21388-21407 Msa1458270:intergenic 45.0%
TGTAAAGGTGGTGTGATCCT+TGG + tig0039509:21417-21436 Msa1458270:intergenic 45.0%
CATTCCATCCAGCTTGTGTT+GGG + tig0039509:21631-21650 Msa1458270:intergenic 45.0%
GTCTGAGGAAGACATCCAAG+TGG + tig0039509:21290-21309 Msa1458270:intergenic 50.0%
TTGGAACGAGGATTGAGCAG+TGG + tig0039509:21312-21331 Msa1458270:intergenic 50.0%
GGTTGTTATGGAGAGCTACG+AGG + tig0039509:21358-21377 Msa1458270:intergenic 50.0%
TGGTGTGATCCTTGGCTTCT+TGG + tig0039509:21409-21428 Msa1458270:intergenic 50.0%
! TCGTTTGAAGCCATGTTGCG+CGG - tig0039509:21502-21521 Msa1458270:intron 50.0%
GCATTCCATCCAGCTTGTGT+TGG + tig0039509:21632-21651 Msa1458270:intergenic 50.0%
GTCTGAGGAAGACATCCAAG+TGG + tig0039509:21290-21309 Msa1458270:intergenic 50.0%
TTGGAACGAGGATTGAGCAG+TGG + tig0039509:21312-21331 Msa1458270:intergenic 50.0%
GGTTGTTATGGAGAGCTACG+AGG + tig0039509:21358-21377 Msa1458270:intergenic 50.0%
TGGTGTGATCCTTGGCTTCT+TGG + tig0039509:21409-21428 Msa1458270:intergenic 50.0%
! TCGTTTGAAGCCATGTTGCG+CGG - tig0039509:21502-21521 Msa1458270:intron 50.0%
GCATTCCATCCAGCTTGTGT+TGG + tig0039509:21632-21651 Msa1458270:intergenic 50.0%
TACCGGGAGAGAGCCATTTG+TGG + tig0039509:21024-21043 Msa1458270:intergenic 55.0%
GAGGATTGAGCAGTGGTCTG+AGG + tig0039509:21305-21324 Msa1458270:intergenic 55.0%
! CGTTTGAAGCCATGTTGCGC+GGG - tig0039509:21503-21522 Msa1458270:intron 55.0%
GGATTGCACCCAACACAAGC+TGG - tig0039509:21620-21639 Msa1458270:CDS 55.0%
TGCACCCAACACAAGCTGGA+TGG - tig0039509:21624-21643 Msa1458270:CDS 55.0%
TACCGGGAGAGAGCCATTTG+TGG + tig0039509:21024-21043 Msa1458270:intergenic 55.0%
GAGGATTGAGCAGTGGTCTG+AGG + tig0039509:21305-21324 Msa1458270:intergenic 55.0%
! CGTTTGAAGCCATGTTGCGC+GGG - tig0039509:21503-21522 Msa1458270:intron 55.0%
GGATTGCACCCAACACAAGC+TGG - tig0039509:21620-21639 Msa1458270:CDS 55.0%
TGCACCCAACACAAGCTGGA+TGG - tig0039509:21624-21643 Msa1458270:CDS 55.0%
GGCCACAAATGGCTCTCTCC+CGG - tig0039509:21019-21038 Msa1458270:CDS 60.0%
CTGCTTACTCCCGCGCAACA+TGG + tig0039509:21515-21534 Msa1458270:intergenic 60.0%
GGCCACAAATGGCTCTCTCC+CGG - tig0039509:21019-21038 Msa1458270:CDS 60.0%
CTGCTTACTCCCGCGCAACA+TGG + tig0039509:21515-21534 Msa1458270:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0039509 gene 20744 21881 20744 ID=Msa1458270;Name=Msa1458270
tig0039509 mRNA 20744 21881 20744 ID=Msa1458270-mRNA-1;Parent=Msa1458270;Name=Msa1458270-mRNA-1;_AED=0.06;_eAED=0.06;_QI=99|1|1|1|1|1|2|181|237
tig0039509 exon 20744 21440 20744 ID=Msa1458270-mRNA-1:exon:21677;Parent=Msa1458270-mRNA-1
tig0039509 exon 21585 21881 21585 ID=Msa1458270-mRNA-1:exon:21676;Parent=Msa1458270-mRNA-1
tig0039509 five_prime_UTR 21783 21881 21783 ID=Msa1458270-mRNA-1:five_prime_utr;Parent=Msa1458270-mRNA-1
tig0039509 CDS 21585 21782 21585 ID=Msa1458270-mRNA-1:cds;Parent=Msa1458270-mRNA-1
tig0039509 CDS 20925 21440 20925 ID=Msa1458270-mRNA-1:cds;Parent=Msa1458270-mRNA-1
tig0039509 three_prime_UTR 20744 20924 20744 ID=Msa1458270-mRNA-1:three_prime_utr;Parent=Msa1458270-mRNA-1
Gene Sequence

>Msa1458270

ATGAACTTTGCATATGGTGGTACAGGTGTATTTGATACATTTACTTCAGGACCAAATATGACAACTCAAATCGATTCCTTCAACCAAGTCATTCAAGAAAATGTCTATACTCATTCAGATCTCAACAAAGCTATTGCTTATGTCTCTGTTGCTGGAAATGACTACAATCATTACTTGGCCACAAATGGCTCTCTCCCGGGTTTTCCATCTTTCATTGCTTCAGTTGTTAAACAAACAACGACCGATTTGATTCATCTCCAAAGCATAGGATTTAAGAGAATTGTTGTAGGTGCTTTACAACCACTTGGATGTCTTCCTCAGACCACTGCTCAATCCTCGTTCCAACGTTGCAATAGTACATTCAACGACCTCGTAGCTCTCCATAACAACCTATTGAACCAATCCGTGACCAAATTGAACCAAGAAGCCAAGGATCACACCACCTTTACAATTCTAGACATTTTTGACAGTTTCGCGTCTGTGTTGAACCACCCTTCAAGCCATAATATCAAGGATCGTTTGAAGCCATGTTGCGCGGGAGTAAGCAGTCAGTATAATTGTGGAAGTGTAGATGAAAATAATGTTAAGAAATATTTGGTTTGTAAAAATCCGGAATCAAGTTTCTTTTGGGATGGATTGCACCCAACACAAGCTGGATGGAATGCTGTATATAATGAGTTGGAGAAGAAAGGTCTTCACCATATTTTGTACTAG

Protein sequence

>Msa1458270

MNFAYGGTGVFDTFTSGPNMTTQIDSFNQVIQENVYTHSDLNKAIAYVSVAGNDYNHYLATNGSLPGFPSFIASVVKQTTTDLIHLQSIGFKRIVVGALQPLGCLPQTTAQSSFQRCNSTFNDLVALHNNLLNQSVTKLNQEAKDHTTFTILDIFDSFASVLNHPSSHNIKDRLKPCCAGVSSQYNCGSVDENNVKKYLVCKNPESSFFWDGLHPTQAGWNAVYNELEKKGLHHILY*