AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0017840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0017840 MtrunA17_Chr3g0136911 79.275 1187 64 10 3 1007 2 1188 0.0 1842
Msa0017840 MtrunA17_Chr8g0375171 69.263 1194 172 16 1 1007 1 1186 0.0 1560
Msa0017840 MtrunA17_Chr3g0142431 92.653 245 18 0 763 1007 1 245 7.06e-161 473
Msa0017840 MtrunA17_Chr3g0142441 72.297 296 19 3 461 693 2 297 5.43e-135 408
Msa0017840 MtrunA17_Chr1g0155911 33.679 772 395 13 335 1005 427 1182 8.27e-123 404
Msa0017840 MtrunA17_Chr1g0155911 27.861 201 112 7 51 238 36 216 3.17e-17 87.4
Msa0017840 MtrunA17_Chr8g0345421 31.635 746 409 24 348 1005 398 1130 8.09e-85 297
Msa0017840 MtrunA17_Chr4g0069391 27.743 793 442 24 322 1003 423 1195 1.89e-61 228
Msa0017840 MtrunA17_Chr3g0142451 93.137 102 7 0 331 432 1 102 5.55e-61 202
Msa0017840 MtrunA17_Chr3g0142471 68.548 124 38 1 129 251 6 129 5.97e-49 169
Msa0017840 MtrunA17_Chr3g0142481 75.385 65 12 2 4 66 3 65 6.24e-27 104
Msa0017840 MtrunA17_Chr4g0016641 26.354 277 173 6 679 936 752 1016 1.74e-18 91.3
Msa0017840 MtrunA17_CPg0493041 26.354 277 173 6 679 936 752 1016 1.74e-18 91.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0017840 AT3G23780.1 54.079 1189 330 21 16 1007 3 1172 0.0 1170
Msa0017840 AT3G23780.2 54.079 1189 330 21 16 1007 3 1172 0.0 1170
Msa0017840 AT3G18090.1 54.213 1068 280 18 134 1007 3 1055 0.0 1054
Msa0017840 AT3G18090.2 49.061 905 252 18 134 844 3 892 0.0 766
Msa0017840 AT3G18090.3 49.113 902 250 18 134 841 3 889 0.0 764
Msa0017840 AT4G21710.1 35.113 749 382 16 352 1005 440 1179 4.12e-120 396
Msa0017840 AT4G21710.1 24.893 233 142 7 19 238 1 213 3.98e-17 87.4
Msa0017840 AT5G45140.2 27.787 1166 572 41 51 998 39 1152 1.75e-97 333
Msa0017840 AT5G45140.1 27.787 1166 572 41 51 998 39 1152 1.75e-97 333
Msa0017840 AT1G29940.1 26.928 765 444 22 344 1003 415 1169 2.18e-58 219
Msa0017840 AT5G45140.3 24.519 779 364 30 51 657 39 765 5.17e-35 144
Msa0017840 ATCG00190.1 22.273 660 381 17 386 936 377 1013 8.88e-24 108

Find 277 sgRNAs with CRISPR-Local

Find 546 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTGAAGACATTGTTAATTT+TGG 0.068206 1_1:-29824986 Msa0017840:CDS
AAAGCATCGACTCTTATATT+TGG 0.143484 1_1:+29825292 None:intergenic
GGTCCGATCACTAATATTTA+TGG 0.167762 1_1:-29823032 Msa0017840:CDS
TTGAACATCAACTTTCATTT+TGG 0.208141 1_1:+29829759 None:intergenic
ACGGAGGGAATTACAAATTA+TGG 0.223094 1_1:-29828334 Msa0017840:CDS
TGTCGGGTCAGCGGGTGAAC+TGG 0.228681 1_1:+29822944 None:intergenic
CAATATGCCATGGTTAAGTT+TGG 0.229798 1_1:-29829886 Msa0017840:CDS
AAATAGGATGGTTGTTAAAT+TGG 0.238146 1_1:-29828368 Msa0017840:CDS
TTGAAGTCCTCTTCTTCTTC+AGG 0.252661 1_1:+29825512 None:intergenic
CCGAAGTCTGAATTCTATAA+TGG 0.263295 1_1:-29825172 Msa0017840:CDS
TGATGATACTACAACTGTTC+TGG 0.268942 1_1:-29826997 Msa0017840:CDS
GCATGGACAGAAAGGTGTTT+TGG 0.290240 1_1:-29824439 Msa0017840:CDS
GAAAGTTGATGTTCAACTTC+AGG 0.293979 1_1:-29829752 Msa0017840:intron
AGTAATCTGCCCAAGATTAA+AGG 0.295606 1_1:-29825599 Msa0017840:CDS
CAAAGCTGAAATTGAGAATA+AGG 0.300709 1_1:-29825032 Msa0017840:CDS
TTCTTAGAGGAACGTGTAAA+AGG 0.305968 1_1:-29828214 Msa0017840:CDS
CGACTTAGATCCTTTAATCT+TGG 0.306824 1_1:+29825589 None:intergenic
CGATTTGGAGGTATTAAGTT+TGG 0.307283 1_1:-29822902 Msa0017840:CDS
CTCCAGTAGAAAACGCTCTT+TGG 0.308318 1_1:+29827897 None:intergenic
CACTTGATCGACCGAAGTTT+TGG 0.313649 1_1:-29829855 Msa0017840:CDS
AGAAGTGATGAATTGATTAT+AGG 0.315125 1_1:+29829996 None:intergenic
GCTCTGCAGAGAGACCTTTA+TGG 0.316497 1_1:-29827980 Msa0017840:CDS
ATCGGGCTGTGTGCTGATTC+AGG 0.321233 1_1:-29824865 Msa0017840:CDS
GACAATAACTTTGCTCCATA+TGG 0.321548 1_1:+29822665 None:intergenic
CAAACTTAACCATGGCATAT+TGG 0.324992 1_1:+29829887 None:intergenic
CCAAAATTAACAATGTCTTC+AGG 0.325956 1_1:+29824986 None:intergenic
TGGTCAAGTCTGATCTTTGC+TGG 0.326694 1_1:-29829103 Msa0017840:CDS
GGTTTCAAATATTCCGTATT+GGG 0.328046 1_1:-29828419 Msa0017840:CDS
TCATCGACATCTTTCTTAGA+AGG 0.335400 1_1:+29829916 None:intergenic
CAGGTTAGAAGCCCAGTTCT+TGG 0.335580 1_1:-29824480 Msa0017840:CDS
TAAATCTTTCCAGTCCCTAT+TGG 0.337687 1_1:-29825561 Msa0017840:CDS
AGTCACAGATGAAGAGAAAT+AGG 0.340801 1_1:-29828384 Msa0017840:CDS
AAAGACAAGGTCTTCCTAAA+TGG 0.341311 1_1:-29826969 Msa0017840:CDS
TATAATCAATTCATCACTTC+TGG 0.341794 1_1:-29829994 Msa0017840:CDS
TGTGCTTTAGCTTTATACTA+TGG 0.343766 1_1:+29824836 None:intergenic
AAGCATTCTTCTCAAGCTAT+TGG 0.348072 1_1:-29825331 Msa0017840:CDS
AGATCAGACTTGACCATAAC+AGG 0.353811 1_1:+29829110 None:intergenic
AAGCATCGACTCTTATATTT+GGG 0.354092 1_1:+29825293 None:intergenic
TTCCAGTCCCTATTGGATAA+TGG 0.357748 1_1:-29825554 Msa0017840:CDS
TCTGGTGTGGTTGCAACTCT+TGG 0.363686 1_1:-29827839 Msa0017840:CDS
AGGTATTAAGTTTGGTGAAA+TGG 0.366125 1_1:-29822894 Msa0017840:CDS
CCTGAATTTGACCTTGTCTT+CGG 0.368019 1_1:+29822976 None:intergenic
CCATTACCGACCAGCTTCAT+AGG 0.377816 1_1:-29824227 Msa0017840:intron
GGAAAGGGCATTGCCCTTGT+TGG 0.380253 1_1:-29824294 Msa0017840:CDS
CTCCAACCCAGTCACCATTT+AGG 0.380357 1_1:+29826955 None:intergenic
TGACCTTGTCTTCGGACATA+TGG 0.382034 1_1:+29822984 None:intergenic
TCAAAAGTCTAGTTTGGTCT+AGG 0.386094 1_1:+29822549 None:intergenic
GAGAACTTATCTCCAAGAAC+TGG 0.386193 1_1:+29824468 None:intergenic
AAATATTTCTGAAGAGGCTC+TGG 0.386743 1_1:-29828441 Msa0017840:CDS
TGTCAATAAATACTCATAAC+TGG 0.387438 1_1:+29822481 None:intergenic
CAATAACGCCATTATCCAAT+AGG 0.388452 1_1:+29825546 None:intergenic
TGTTCAGATCTGAGCATATA+AGG 0.389042 1_1:-29825060 Msa0017840:CDS
TTATCACTCCGAACCTTCTT+CGG 0.391685 1_1:+29829212 None:intergenic
CTGATGCACCGTGAGCTATC+AGG 0.392438 1_1:+29822861 None:intergenic
GATGATACTACAACTGTTCT+GGG 0.392659 1_1:-29826996 Msa0017840:CDS
CACAGTTCAAAAGTCTAGTT+TGG 0.394124 1_1:+29822543 None:intergenic
ACCTTTCTGTCCATGCATAC+TGG 0.395297 1_1:+29824446 None:intergenic
GTGATCTTGCGACCGGTATC+TGG 0.396475 1_1:-29822758 Msa0017840:CDS
GTCGCTGACAGGAAGCGATT+TGG 0.397585 1_1:-29822917 Msa0017840:CDS
TTCCTCAGCTGTTCGATTGT+GGG 0.400749 1_1:-29827034 Msa0017840:CDS
ACAACTACAAGAAGCTGCTT+TGG 0.401642 1_1:-29824316 Msa0017840:CDS
TGTGGATTTATAATAATATC+AGG 0.403758 1_1:+29824366 None:intergenic
TGGGGTGTTCAGTATTTGTT+TGG 0.404123 1_1:-29825482 Msa0017840:CDS
AAAAGGATGGAAAGGATATC+TGG 0.404544 1_1:-29827857 Msa0017840:CDS
ATTGATTATAGGAGTTGATT+TGG 0.407015 1_1:+29830007 None:intergenic
GGGTTTCAAATATTCCGTAT+TGG 0.410124 1_1:-29828420 Msa0017840:CDS
CAACGAACTCGGCGACGATA+TGG 0.411795 1_1:-29830091 Msa0017840:CDS
CGGAGTGATAAGTTTAAGAC+TGG 0.412464 1_1:-29829200 Msa0017840:CDS
AGAGGACTTCAAGACTGCTT+GGG 0.413762 1_1:-29825501 Msa0017840:CDS
CGCCAACATCTACACAGAAA+TGG 0.415636 1_1:-29830157 Msa0017840:CDS
GTCCGATCACTAATATTTAT+GGG 0.415991 1_1:-29823031 Msa0017840:CDS
AATATGCCATGGTTAAGTTT+GGG 0.416030 1_1:-29829885 Msa0017840:CDS
GACTTAGATCCTTTAATCTT+GGG 0.418060 1_1:+29825590 None:intergenic
GCTAGAAAACTAACGAATGA+TGG 0.426212 1_1:-29822362 Msa0017840:three_prime_UTR
TTGGAGACCATTTGTAATGA+TGG 0.426258 1_1:+29827916 None:intergenic
GTTGCAGGCATCCTTCTCAC+TGG 0.426530 1_1:-29827160 Msa0017840:intron
CAACTACAAGAAGCTGCTTT+GGG 0.426779 1_1:-29824315 Msa0017840:CDS
TCCTGTCAGCGACAGGCTGT+CGG 0.428603 1_1:+29822927 None:intergenic
TTTCACCATCTGGGGTAGAA+AGG 0.429958 1_1:+29827123 None:intergenic
CTTCCTCAGCTGTTCGATTG+TGG 0.430430 1_1:-29827035 Msa0017840:CDS
CCGAAGACAAGGTCAAATTC+AGG 0.433062 1_1:-29822976 Msa0017840:CDS
GCATCCTTCTCACTGGGGTA+AGG 0.434903 1_1:-29827153 Msa0017840:CDS
GTCATGTTCTTCGGTCAATA+CGG 0.436680 1_1:-29830042 Msa0017840:CDS
TTGAGGATTTCAGCGTTTGA+TGG 0.437494 1_1:+29830111 None:intergenic
AATTCAGCCATGGTTTGTAA+TGG 0.438058 1_1:+29827806 None:intergenic
AAAGCTTGCGTCATGTTCTT+CGG 0.440357 1_1:-29830051 Msa0017840:CDS
CGAAGTCTGAATTCTATAAT+GGG 0.440560 1_1:-29825171 Msa0017840:CDS
TGCTGTTGTTTCGTTAAGAC+AGG 0.440677 1_1:-29824755 Msa0017840:intron
TATTGGTAGACTGCCTGTTA+TGG 0.440804 1_1:-29829123 Msa0017840:CDS
CGAGTATACAACGGGAGGAC+TGG 0.442701 1_1:-29823061 Msa0017840:CDS
GATGTCATTGTCTGAAAGAA+TGG 0.442999 1_1:+29825241 None:intergenic
GAACATCTCGATCTCCATAA+AGG 0.443290 1_1:+29827966 None:intergenic
CCTTCTCAGCACCCTTGATC+AGG 0.446573 1_1:+29829030 None:intergenic
GTCGGGTCAGCGGGTGAACT+GGG 0.447141 1_1:+29822945 None:intergenic
GGTGATCTCACTGTTACGCC+GGG 0.450272 1_1:-29829946 Msa0017840:CDS
AAGGATTCTCCATCCACTCT+TGG 0.452509 1_1:-29825627 Msa0017840:CDS
CAGTATTTGTTTGGCAAAGA+GGG 0.453090 1_1:-29825473 Msa0017840:CDS
TCAGGTATATATTCCGAAGA+AGG 0.454636 1_1:-29829225 Msa0017840:intron
TGGATGAGTGAAGCTGAAAA+AGG 0.454682 1_1:-29829083 Msa0017840:CDS
ATAGGAGTTGATTTGGTGAC+TGG 0.455730 1_1:+29830014 None:intergenic
CTCGGAAAACCTGGATATCT+AGG 0.455828 1_1:-29825211 Msa0017840:CDS
TTAATCTGACCTAGATATCC+AGG 0.456747 1_1:+29825202 None:intergenic
CCTGTCAGCGACAGGCTGTC+GGG 0.459295 1_1:+29822928 None:intergenic
AGCCATGGTTTGTAATGGAT+TGG 0.460916 1_1:+29827811 None:intergenic
GAATTGTTTAAACTTTAAAG+TGG 0.461445 1_1:-29822410 Msa0017840:three_prime_UTR
CGAGAGGGGTTATGTTCAAA+AGG 0.462761 1_1:-29824812 Msa0017840:CDS
TTCAGTACACAGGAAAGGTC+GGG 0.465796 1_1:-29827763 Msa0017840:CDS
CAAGAAGCTGCTTTGGGAAA+GGG 0.467087 1_1:-29824309 Msa0017840:CDS
GAACTGTGTGCATATCAGTT+TGG 0.468126 1_1:-29822528 Msa0017840:three_prime_UTR
CGACAGGCTGTCGGGTCAGC+GGG 0.468169 1_1:+29822936 None:intergenic
AAGAGGACTTCAAGACTGCT+TGG 0.469345 1_1:-29825502 Msa0017840:CDS
GTATCAAGGAAACAACATTC+AGG 0.472464 1_1:+29822503 None:intergenic
CACATTTATCGTCTGCCTCA+CGG 0.473545 1_1:+29828269 None:intergenic
CCTATGAAGCTGGTCGGTAA+TGG 0.473583 1_1:+29824227 None:intergenic
AATACTCATAACTGGTATCA+AGG 0.474055 1_1:+29822489 None:intergenic
GACGCTTCCATCATTACAAA+TGG 0.476191 1_1:-29827923 Msa0017840:CDS
GAGAAATGAGTTGCCTCATC+AGG 0.476514 1_1:-29826883 Msa0017840:intron
TATATATTCCGAAGAAGGTT+CGG 0.477542 1_1:-29829220 Msa0017840:CDS
TGGAGGCTACTTCCTGATCA+AGG 0.479532 1_1:-29829042 Msa0017840:CDS
CGCCATTATCCAATAGGGAC+TGG 0.480284 1_1:+29825552 None:intergenic
CGGTGATCTCACTGTTACGC+CGG 0.480449 1_1:-29829947 Msa0017840:CDS
GCAGACGCTGGTAGAATGTT+GGG 0.481808 1_1:+29823008 None:intergenic
CATCAGCTAATTTGTATGAA+TGG 0.484246 1_1:-29822844 Msa0017840:CDS
TGGAGCAAAGTTATTGTCTC+AGG 0.484390 1_1:-29822660 Msa0017840:CDS
GAGACAAGGGAAATAACTAT+TGG 0.484631 1_1:-29829140 Msa0017840:CDS
AATGGCGTTATTGAGCTGAT+TGG 0.485783 1_1:-29825536 Msa0017840:CDS
TAAATGTGAAGCGTTTCGTA+GGG 0.486915 1_1:-29828254 Msa0017840:CDS
AGGTCTTCCTAAATGGTGAC+TGG 0.487018 1_1:-29826962 Msa0017840:CDS
CTTTGCTCCATATGGAATGC+TGG 0.489948 1_1:+29822673 None:intergenic
TGTTTCCTTTCTACCCCAGA+TGG 0.490279 1_1:-29827128 Msa0017840:CDS
TGTTCTTCTTAATTCAGCCA+TGG 0.493474 1_1:+29827796 None:intergenic
CTGGTGTGGTTGCAACTCTT+GGG 0.494422 1_1:-29827838 Msa0017840:CDS
TAGGATGGTTGTTAAATTGG+TGG 0.495089 1_1:-29828365 Msa0017840:CDS
GTCTGAAAGAATGGTCTTTG+TGG 0.495945 1_1:+29825250 None:intergenic
TTGCAGGCATCCTTCTCACT+GGG 0.496735 1_1:-29827159 Msa0017840:intron
CCCGACAGCCTGTCGCTGAC+AGG 0.497438 1_1:-29822928 Msa0017840:CDS
AATCGCTTCCTGTCAGCGAC+AGG 0.499397 1_1:+29822920 None:intergenic
CAAAAGTCTAGTTTGGTCTA+GGG 0.501841 1_1:+29822550 None:intergenic
GTTGTGGCCAGCATTCCATA+TGG 0.504256 1_1:-29822680 Msa0017840:CDS
TCTGATTGTCTCGGAAAACC+TGG 0.509474 1_1:-29825220 Msa0017840:CDS
AATAACGCCATTATCCAATA+GGG 0.510640 1_1:+29825547 None:intergenic
CCTGATCAAGGGTGCTGAGA+AGG 0.511307 1_1:-29829030 Msa0017840:intron
ACAAGAAGCTGCTTTGGGAA+AGG 0.511924 1_1:-29824310 Msa0017840:CDS
ATCTTCCGGCCACCAGATAC+CGG 0.512174 1_1:+29822746 None:intergenic
TTCCTAAATGGTGACTGGGT+TGG 0.515477 1_1:-29826957 Msa0017840:CDS
AGTACGGACCTCGAATCTTC+CGG 0.515498 1_1:+29822732 None:intergenic
GTCCATTTCTGTGTAGATGT+TGG 0.515754 1_1:+29830155 None:intergenic
CATGGACACATCCTTTCAAA+AGG 0.518074 1_1:-29827874 Msa0017840:CDS
ATAAATGTGAAGCGTTTCGT+AGG 0.519091 1_1:-29828255 Msa0017840:CDS
TCGGGCTGTGTGCTGATTCA+GGG 0.520195 1_1:-29824864 Msa0017840:CDS
GGGAATTACAAATTATGGAC+AGG 0.520323 1_1:-29828329 Msa0017840:CDS
CAGAGTGGTGACATTATCAT+CGG 0.521740 1_1:-29824883 Msa0017840:CDS
GACACATCCTTTCAAAAGGA+TGG 0.521759 1_1:-29827870 Msa0017840:CDS
AATGGCTTCAACAGAGGAAG+TGG 0.521973 1_1:+29824245 None:intergenic
TCCAGTATGCATGGACAGAA+AGG 0.527406 1_1:-29824447 Msa0017840:CDS
CTCTGCAACCTAGCATGTCT+CGG 0.528109 1_1:+29829796 None:intergenic
GTCTCAGGAGCTGTTCAGCA+TGG 0.529733 1_1:-29822645 Msa0017840:CDS
ATCGAACAGCTGAGGAAGTA+CGG 0.532463 1_1:+29827040 None:intergenic
TCAACAGAGGAAGTGGAGAA+AGG 0.532899 1_1:+29824252 None:intergenic
GCATTCAAGAAAATCAGATC+AGG 0.534084 1_1:+29822453 None:intergenic
ACAAATTATGGACAGGCAGA+TGG 0.534372 1_1:-29828322 Msa0017840:CDS
ATCCTTTCAAAAGGATGGAA+AGG 0.537841 1_1:-29827865 Msa0017840:CDS
GTGCGTATATTATCTGATGC+AGG 0.538205 1_1:-29825650 Msa0017840:CDS
GGAACGAACGAGTATACAAC+GGG 0.539991 1_1:-29823069 Msa0017840:CDS
AATATTTCTGAAGAGGCTCT+GGG 0.543789 1_1:-29828440 Msa0017840:CDS
CTAGAAAACTAACGAATGAT+GGG 0.544331 1_1:-29822361 Msa0017840:three_prime_UTR
CACTCGTCAATAGATTCTGC+AGG 0.544520 1_1:+29828178 None:intergenic
TGCGACCGGTATCTGGTGGC+CGG 0.547112 1_1:-29822751 Msa0017840:CDS
AAGAGCAAATATTTCTGAAG+AGG 0.547745 1_1:-29828447 Msa0017840:CDS
ATGGTTGTTAAATTGGTGGA+AGG 0.549390 1_1:-29828361 Msa0017840:CDS
TTGAAAGCAACAGCCCAATA+CGG 0.551751 1_1:+29828406 None:intergenic
TGCTAGGAAGCGAATGGGAA+AGG 0.553069 1_1:-29828002 Msa0017840:intron
TACTAACAACCAAGAGTGGA+TGG 0.553584 1_1:+29825618 None:intergenic
TCAGTATTTGTTTGGCAAAG+AGG 0.554930 1_1:-29825474 Msa0017840:CDS
TGGAAGATTACCTATGAAGC+TGG 0.555512 1_1:+29824217 None:intergenic
GCACATGCTAGGAAGCGAAT+GGG 0.557921 1_1:-29828007 Msa0017840:intron
CGGACATATGGTGCAGACGC+TGG 0.562614 1_1:+29822996 None:intergenic
GCTGACAGGAAGCGATTTGG+AGG 0.563584 1_1:-29822914 Msa0017840:CDS
GATTGGTCCTGAAGAAGAAG+AGG 0.564149 1_1:-29825519 Msa0017840:CDS
TGCACATGCTAGGAAGCGAA+TGG 0.566559 1_1:-29828008 Msa0017840:intron
GCGACAGGCTGTCGGGTCAG+CGG 0.566910 1_1:+29822935 None:intergenic
TCTGGTGGCCGGAAGATTCG+AGG 0.567048 1_1:-29822740 Msa0017840:CDS
CATTTCTCAGTGAACCAACA+AGG 0.568902 1_1:+29824280 None:intergenic
GTTCAGTACACAGGAAAGGT+CGG 0.569216 1_1:-29827764 Msa0017840:CDS
AATTTCCCCTTCACAAAACA+AGG 0.569701 1_1:-29824396 Msa0017840:CDS
CAACGGGAGGACTGGTGAGA+TGG 0.570296 1_1:-29823053 Msa0017840:CDS
CATCGGCTGATTCACAGAAA+CGG 0.571228 1_1:+29822708 None:intergenic
GATAAGTTCTCCAGTATGCA+TGG 0.571930 1_1:-29824456 Msa0017840:CDS
TTGGTGGAAGGTTCCACGGA+GGG 0.572533 1_1:-29828349 Msa0017840:CDS
TGATCAGGAAGTAGCCTCCA+TGG 0.573050 1_1:+29829045 None:intergenic
GTCTTTGTGGATAAAACAGT+TGG 0.573332 1_1:+29825263 None:intergenic
TGCAGACGCTGGTAGAATGT+TGG 0.573608 1_1:+29823007 None:intergenic
TAAATTGGTGGAAGGTTCCA+CGG 0.574279 1_1:-29828353 Msa0017840:CDS
TCTCAGGAGCTGTTCAGCAT+GGG 0.574908 1_1:-29822644 Msa0017840:CDS
AGATGCTTCCGAGACATGCT+AGG 0.577508 1_1:-29829804 Msa0017840:CDS
TCAGCTGTTCGATTGTGGGA+TGG 0.579309 1_1:-29827030 Msa0017840:CDS
ACCCCAGATGGTGAAAATTG+TGG 0.580727 1_1:-29827116 Msa0017840:CDS
GTATCTGAGACGAATCACTC+AGG 0.581128 1_1:+29822813 None:intergenic
GATTAAAAGTGAACCTGATG+AGG 0.581823 1_1:+29826870 None:intergenic
AACCAATCCATTACAAACCA+TGG 0.584723 1_1:-29827813 Msa0017840:CDS
TCAAAAGAAAACAAATGCAA+AGG 0.585126 1_1:+29822431 None:intergenic
GCTGAAATCCTCAACGAACT+CGG 0.587823 1_1:-29830102 Msa0017840:CDS
GGCCCATAAATATTAGTGAT+CGG 0.587923 1_1:+29823029 None:intergenic
GTCGGTAATGGCTTCAACAG+AGG 0.589189 1_1:+29824239 None:intergenic
GGAGGCTACTTCCTGATCAA+GGG 0.590334 1_1:-29829041 Msa0017840:CDS
GATCTTCATCGTTGATGTCG+AGG 0.591639 1_1:+29830133 None:intergenic
GCACCATATGTCCGAAGACA+AGG 0.594516 1_1:-29822987 Msa0017840:CDS
CAGAGCTACGAAATAGAAGA+CGG 0.594914 1_1:-29826905 Msa0017840:CDS
CGTGATTGCCTGATAGCTCA+CGG 0.596157 1_1:-29822869 Msa0017840:CDS
GAGGACTTCAAGACTGCTTG+GGG 0.598252 1_1:-29825500 Msa0017840:CDS
GCTGGCCACAACAATGTCAT+CGG 0.599620 1_1:+29822691 None:intergenic
AGTATTTGTTTGGCAAAGAG+GGG 0.600045 1_1:-29825472 Msa0017840:CDS
TGTCGAGGAGTTTGTCGTGA+GGG 0.601258 1_1:+29824336 None:intergenic
AGAGTGGTGACATTATCATC+GGG 0.603973 1_1:-29824882 Msa0017840:CDS
AGATCAAGTTGAATGAGACA+AGG 0.605148 1_1:-29829154 Msa0017840:CDS
CCTTCACCACACCAAAACTT+CGG 0.605545 1_1:+29829844 None:intergenic
GGTTACTTTGAATTTGACCA+TGG 0.606089 1_1:-29829062 Msa0017840:CDS
CCATTATAGAATTCAGACTT+CGG 0.606648 1_1:+29825172 None:intergenic
TATCGTCGCCGAGTTCGTTG+AGG 0.607320 1_1:+29830094 None:intergenic
AAGCTAAAGCACACCGAGAG+GGG 0.607385 1_1:-29824826 Msa0017840:CDS
AAGGTCAAATTCAGGAACAC+TGG 0.612876 1_1:-29822968 Msa0017840:CDS
GCAGCTTCTTGTAGTTGTCG+AGG 0.613472 1_1:+29824321 None:intergenic
GTGCTGTCTTCGAATGATGA+GGG 0.614672 1_1:-29824787 Msa0017840:CDS
TTCTTAGAAGGATCAAACCC+CGG 0.618820 1_1:+29829928 None:intergenic
TACATTCCCAAACTTAACCA+TGG 0.621502 1_1:+29829879 None:intergenic
GATTCACAGAAACGGCAGTA+CGG 0.621823 1_1:+29822716 None:intergenic
CAAACCTTACCCCAGTGAGA+AGG 0.623788 1_1:+29827149 None:intergenic
CAAGATTAAAGGATCTAAGT+CGG 0.624369 1_1:-29825588 Msa0017840:CDS
CGAGACATGCTAGGTTGCAG+AGG 0.626387 1_1:-29829795 Msa0017840:CDS
AGAACTTATCTCCAAGAACT+GGG 0.626557 1_1:+29824469 None:intergenic
AGATTACCTATGAAGCTGGT+CGG 0.626725 1_1:+29824221 None:intergenic
ATTTCTCAGTGAACCAACAA+GGG 0.628334 1_1:+29824281 None:intergenic
ACAGATGAAGAGAAATAGGA+TGG 0.628812 1_1:-29828380 Msa0017840:CDS
TGCAAATGTGATCTTGCGAC+CGG 0.628861 1_1:-29822765 Msa0017840:CDS
GGTCTTCCTAAATGGTGACT+GGG 0.629852 1_1:-29826961 Msa0017840:CDS
TAATGGGCAGAATGCAATTG+TGG 0.631335 1_1:-29825155 Msa0017840:CDS
AAAGCTAAAGCACACCGAGA+GGG 0.631841 1_1:-29824827 Msa0017840:CDS
ATAATTTGTAATTCCCTCCG+TGG 0.634017 1_1:+29828336 None:intergenic
TAGGGAAAGCACTAGAGAGG+TGG 0.634352 1_1:+29822568 None:intergenic
TACTTTGAATTTGACCATGG+AGG 0.636463 1_1:-29829059 Msa0017840:CDS
TCAGTACACAGGAAAGGTCG+GGG 0.637306 1_1:-29827762 Msa0017840:CDS
GGAGTGATAAGTTTAAGACT+GGG 0.637929 1_1:-29829199 Msa0017840:CDS
GATCAAGTTGAATGAGACAA+GGG 0.639586 1_1:-29829153 Msa0017840:CDS
TCGTCAATAGATTCTGCAGG+TGG 0.640877 1_1:+29828181 None:intergenic
ATCCCACAATCGAACAGCTG+AGG 0.642137 1_1:+29827032 None:intergenic
AAGTACGGATTCAGTTACAT+TGG 0.642669 1_1:+29827055 None:intergenic
GCTGTGTGCTGATTCAGGGA+TGG 0.644602 1_1:-29824860 Msa0017840:CDS
GTCTAGGGAAAGCACTAGAG+AGG 0.646751 1_1:+29822565 None:intergenic
ACAACAATGGAGGATCACAT+AGG 0.649720 1_1:-29830192 None:intergenic
AAATGTGAAGCGTTTCGTAG+GGG 0.652895 1_1:-29828253 Msa0017840:CDS
ACAATGACATCTGATTGTCT+CGG 0.654031 1_1:-29825229 Msa0017840:CDS
ACAAGTTCAGTACACAGGAA+AGG 0.656004 1_1:-29827768 Msa0017840:CDS
ATCAGCCGATGACATTGTTG+TGG 0.659651 1_1:-29822696 Msa0017840:CDS
TGTGCTGTCTTCGAATGATG+AGG 0.662109 1_1:-29824788 Msa0017840:CDS
ATCACCGAAGGAATCAAAAG+CGG 0.662292 1_1:+29829963 None:intergenic
TAGCTCTGCTACAAATGACG+TGG 0.664441 1_1:+29826920 None:intergenic
TATCTGAGACGAATCACTCA+GGG 0.666324 1_1:+29822814 None:intergenic
TGTCGTGAGGGAAATGCATG+TGG 0.666436 1_1:+29824348 None:intergenic
TGAACGTTACCAATATGCCA+TGG 0.676071 1_1:-29829896 Msa0017840:CDS
TGCTGTCTTCGAATGATGAG+GGG 0.676097 1_1:-29824786 Msa0017840:CDS
AGATTACTAACAACCAAGAG+TGG 0.676652 1_1:+29825614 None:intergenic
AGGCAACAAGTTCAGTACAC+AGG 0.677661 1_1:-29827773 Msa0017840:CDS
CGTAACAGTGAGATCACCGA+AGG 0.677766 1_1:+29829951 None:intergenic
GTATATTATCTGATGCAGGA+AGG 0.682674 1_1:-29825646 Msa0017840:CDS
GTAGGAGCAAATTTGCAGAG+TGG 0.685642 1_1:-29824898 Msa0017840:intron
TGCAGGCATCCTTCTCACTG+GGG 0.689696 1_1:-29827158 Msa0017840:intron
ACGAACGAGTATACAACGGG+AGG 0.689778 1_1:-29823066 Msa0017840:CDS
ATGATACTACAACTGTTCTG+GGG 0.693515 1_1:-29826995 Msa0017840:CDS
TTGTCGAGGAGTTTGTCGTG+AGG 0.693746 1_1:+29824335 None:intergenic
TAAAGCTAAAGCACACCGAG+AGG 0.698337 1_1:-29824828 Msa0017840:CDS
ATCTTGCGACCGGTATCTGG+TGG 0.706820 1_1:-29822755 Msa0017840:CDS
GTGATCTCACTGTTACGCCG+GGG 0.717756 1_1:-29829945 Msa0017840:CDS
GATGGAAAGGATATCTGGTG+TGG 0.721811 1_1:-29827852 Msa0017840:CDS
TCTCTTTGCATCAATCCGTG+AGG 0.723666 1_1:-29828284 Msa0017840:CDS
GGGAACGAACGAGTATACAA+CGG 0.731907 1_1:-29823070 Msa0017840:CDS
TGGCTGAATTAAGAAGAACA+AGG 0.738169 1_1:-29827793 Msa0017840:CDS
ATTGGTGGAAGGTTCCACGG+AGG 0.762849 1_1:-29828350 Msa0017840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATATAAAATATGACAA+AGG + chr1_1:29825726-29825745 None:intergenic 10.0%
!! TGTAATATACAATATAAATA+GGG + chr1_1:29829432-29829451 None:intergenic 10.0%
!!! TAAACAATTGTGAATTTTAT+AGG + chr1_1:29823606-29823625 None:intergenic 15.0%
!! ATAAAATTCACAATTGTTTA+TGG - chr1_1:29823606-29823625 Msa0017840:intron 15.0%
!!! TAAAAAAATTGCATTTTGAT+TGG - chr1_1:29823920-29823939 Msa0017840:intron 15.0%
!!! AAAAAAATTGCATTTTGATT+GGG - chr1_1:29823921-29823940 Msa0017840:intron 15.0%
!! TAAAACTAAATAAAATTACC+TGG - chr1_1:29824997-29825016 Msa0017840:CDS 15.0%
!!! AATGCTTTCATTTATTTTAA+TGG - chr1_1:29825350-29825369 Msa0017840:intron 15.0%
!! AATAGTTAATAAGGATAATT+TGG + chr1_1:29825995-29826014 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG - chr1_1:29825994-29826013 Msa0017840:intron 15.0%
!!! CATTTTGAAACAATTTTTTT+TGG - chr1_1:29826121-29826140 Msa0017840:intron 15.0%
!!! TTTTTATATTGCAATTACTA+CGG + chr1_1:29826760-29826779 None:intergenic 15.0%
!!! TGTTATTTAATAAAATTTGC+AGG - chr1_1:29828043-29828062 Msa0017840:intron 15.0%
!! TAAATTAAACTAAATCATGA+TGG + chr1_1:29828348-29828367 None:intergenic 15.0%
!! TGGTTAATTGTAATTTATAT+AGG - chr1_1:29828376-29828395 Msa0017840:CDS 15.0%
!! TAAAGACATTATTGTTAAAT+AGG + chr1_1:29829313-29829332 None:intergenic 15.0%
!! CTGTAATATACAATATAAAT+AGG + chr1_1:29829433-29829452 None:intergenic 15.0%
!!! AAAGTTTTCATTTTGAAATG+TGG - chr1_1:29822826-29822845 Msa0017840:CDS 20.0%
!!! AAGTTTTCATTTTGAAATGT+GGG - chr1_1:29822827-29822846 Msa0017840:CDS 20.0%
!!! TTTTTGACTTGAAAATTACT+TGG - chr1_1:29822908-29822927 Msa0017840:CDS 20.0%
!!! TTTTGACTTGAAAATTACTT+GGG - chr1_1:29822909-29822928 Msa0017840:CDS 20.0%
!!! TTTTGACATTAAAATCACTA+CGG - chr1_1:29823175-29823194 Msa0017840:intron 20.0%
!! AAAATACACACAAAAATCAA+AGG + chr1_1:29823204-29823223 None:intergenic 20.0%
!!! TTGTAAAATGTTTTCAAAAC+AGG - chr1_1:29823871-29823890 Msa0017840:intron 20.0%
!!! TGTAAAATGTTTTCAAAACA+GGG - chr1_1:29823872-29823891 Msa0017840:intron 20.0%
!!! CATTTTAATCCTTTAATGTT+CGG + chr1_1:29824409-29824428 None:intergenic 20.0%
!! CATTAAAGGATTAAAATGAA+AGG - chr1_1:29824411-29824430 Msa0017840:CDS 20.0%
!! TAGAAGTTAAAAGTAACTTA+CGG + chr1_1:29824817-29824836 None:intergenic 20.0%
!!! GTTCATATTTAACTTTCATT+CGG + chr1_1:29824890-29824909 None:intergenic 20.0%
!! TAAAGAAGAGATTAATTTAC+AGG + chr1_1:29825140-29825159 None:intergenic 20.0%
!!! TTTATTTTAATGGAAGCTTA+TGG - chr1_1:29825360-29825379 Msa0017840:intron 20.0%
!! AATGATTAAAAGAAAGAGAA+TGG - chr1_1:29825961-29825980 Msa0017840:intron 20.0%
!! ATGATTAAAAGAAAGAGAAT+GGG - chr1_1:29825962-29825981 Msa0017840:intron 20.0%
!! AAACTAACCAATAGTTAATA+AGG + chr1_1:29826004-29826023 None:intergenic 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG - chr1_1:29826081-29826100 Msa0017840:intron 20.0%
!! TGTCTAACATATGATTAAAA+TGG - chr1_1:29826234-29826253 Msa0017840:intron 20.0%
!! ACTTATATATATTGTGTTCT+CGG - chr1_1:29826360-29826379 Msa0017840:intron 20.0%
!! CATAATTGGAAAAATATTAG+AGG + chr1_1:29826663-29826682 None:intergenic 20.0%
!!! TTTTTTATATATTGAACCAG+GGG + chr1_1:29826733-29826752 None:intergenic 20.0%
!!! GTTTTTTATATATTGAACCA+GGG + chr1_1:29826734-29826753 None:intergenic 20.0%
!!! TGTTTTTTATATATTGAACC+AGG + chr1_1:29826735-29826754 None:intergenic 20.0%
!!! ATCATCATTAAAGTAGTTTT+TGG + chr1_1:29827825-29827844 None:intergenic 20.0%
!!! CTTATGGATGAATTTTTTTA+AGG - chr1_1:29827854-29827873 Msa0017840:CDS 20.0%
!! AAAAAATTAGATTTCAGTTG+TGG + chr1_1:29827987-29828006 None:intergenic 20.0%
!!! TAAATAACAACTTTTCTTAG+TGG + chr1_1:29828032-29828051 None:intergenic 20.0%
!! TGTGGATTTATAATAATATC+AGG + chr1_1:29828179-29828198 None:intergenic 20.0%
!!! TAGTTTAATTTAATTGCAGT+TGG - chr1_1:29828356-29828375 Msa0017840:CDS 20.0%
!!! TTTACTTTAAAACCTAGTTT+GGG - chr1_1:29828471-29828490 Msa0017840:intron 20.0%
!! GTATATATTTCTCAAAATTC+AGG - chr1_1:29828734-29828753 Msa0017840:intron 20.0%
!!! GAATTGTTTAAACTTTAAAG+TGG - chr1_1:29830132-29830151 Msa0017840:CDS 20.0%
!! ATTGATTATAGGAGTTGATT+TGG + chr1_1:29822538-29822557 None:intergenic 25.0%
! AGAAGTGATGAATTGATTAT+AGG + chr1_1:29822549-29822568 None:intergenic 25.0%
! TATAATCAATTCATCACTTC+TGG - chr1_1:29822548-29822567 Msa0017840:three_prime_UTR 25.0%
!! TTGAACATCAACTTTCATTT+TGG + chr1_1:29822786-29822805 None:intergenic 25.0%
!! TTGATGTTCATTTTGTAAAG+TGG - chr1_1:29823092-29823111 Msa0017840:CDS 25.0%
!! TGATGTTCATTTTGTAAAGT+GGG - chr1_1:29823093-29823112 Msa0017840:intron 25.0%
!! TTAGTATGATTTGGAATTTG+TGG - chr1_1:29823116-29823135 Msa0017840:intron 25.0%
!!! TTGTGTGTATTTTTGAAATG+TGG - chr1_1:29823211-29823230 Msa0017840:intron 25.0%
!!! TGTGTGTATTTTTGAAATGT+GGG - chr1_1:29823212-29823231 Msa0017840:intron 25.0%
! AATTTAACAAAGTTCATGCA+GGG + chr1_1:29823637-29823656 None:intergenic 25.0%
! AAATTTAACAAAGTTCATGC+AGG + chr1_1:29823638-29823657 None:intergenic 25.0%
!! TTTTGTACAGTAATATGCAA+TGG - chr1_1:29823696-29823715 Msa0017840:intron 25.0%
! AAATAGGATGGTTGTTAAAT+TGG - chr1_1:29824174-29824193 Msa0017840:intron 25.0%
! AGAAGTTAAAAGTAACTTAC+GGG + chr1_1:29824816-29824835 None:intergenic 25.0%
!!! TTCTCATGTTTGATTAGTTT+AGG + chr1_1:29824940-29824959 None:intergenic 25.0%
! TAAACTAATCAAACATGAGA+AGG - chr1_1:29824939-29824958 Msa0017840:intron 25.0%
!!! GTTTTAGTTTTCTTGTTGAT+TGG + chr1_1:29824983-29825002 None:intergenic 25.0%
! CAACACTATAAAGAATTGAA+TGG + chr1_1:29825044-29825063 None:intergenic 25.0%
!! TTGTGGACTGATAAAAAATT+TGG - chr1_1:29825443-29825462 Msa0017840:intron 25.0%
! AATTGGAAAAATATTAGAGG+AGG + chr1_1:29826660-29826679 None:intergenic 25.0%
!! TTTTTATATATTGAACCAGG+GGG + chr1_1:29826732-29826751 None:intergenic 25.0%
! ATATCATCAATAAGATTCCT+TGG - chr1_1:29827429-29827448 Msa0017840:intron 25.0%
!!! TTTTTTAATGAATCCTGAAC+AGG + chr1_1:29828402-29828421 None:intergenic 25.0%
!!! GTTTACTTTAAAACCTAGTT+TGG - chr1_1:29828470-29828489 Msa0017840:intron 25.0%
! ATACTAGTACTATTAAGCAT+TGG + chr1_1:29828519-29828538 None:intergenic 25.0%
!! GTATATCTTTAAAAACACAC+AGG + chr1_1:29828958-29828977 None:intergenic 25.0%
!!! ACCATTTTTTCAGTTCAATA+TGG - chr1_1:29829162-29829181 Msa0017840:CDS 25.0%
! ACCATATTGAACTGAAAAAA+TGG + chr1_1:29829166-29829185 None:intergenic 25.0%
! TATATTGTATATTACAGAGC+TGG - chr1_1:29829436-29829455 Msa0017840:intron 25.0%
! TGTCAATAAATACTCATAAC+TGG + chr1_1:29830064-29830083 None:intergenic 25.0%
! TCAAAAGAAAACAAATGCAA+AGG + chr1_1:29830114-29830133 None:intergenic 25.0%
AATATGCCATGGTTAAGTTT+GGG - chr1_1:29822657-29822676 Msa0017840:CDS 30.0%
! TGGTTTTTGTGTGTAAATAG+TGG - chr1_1:29822939-29822958 Msa0017840:CDS 30.0%
! GGTTTTTGTGTGTAAATAGT+GGG - chr1_1:29822940-29822959 Msa0017840:CDS 30.0%
ACATAGGTTGTGTTTGTATT+TGG - chr1_1:29823024-29823043 Msa0017840:CDS 30.0%
ACTACATGTGTGTTAATTAC+AGG - chr1_1:29823063-29823082 Msa0017840:CDS 30.0%
!! TAAAGTGGGTTAGTATGATT+TGG - chr1_1:29823107-29823126 Msa0017840:intron 30.0%
TTAACACATAACCATCAAAC+AGG + chr1_1:29823144-29823163 None:intergenic 30.0%
! AAATAAACACGTAGAGTGTT+TGG - chr1_1:29823268-29823287 Msa0017840:intron 30.0%
!! TTTGGATTTTGATGTTCTGT+GGG - chr1_1:29823286-29823305 Msa0017840:intron 30.0%
TATATATTCCGAAGAAGGTT+CGG - chr1_1:29823322-29823341 Msa0017840:intron 30.0%
TAGCCAAAATTGCAGAAATT+TGG - chr1_1:29823805-29823824 Msa0017840:intron 30.0%
AGCCAAAATTGCAGAAATTT+GGG - chr1_1:29823806-29823825 Msa0017840:intron 30.0%
TACAAAAGCAGTATTGTCTA+TGG + chr1_1:29823856-29823875 None:intergenic 30.0%
!! AAAGCACTGCATTAAAATGT+AGG + chr1_1:29823964-29823983 None:intergenic 30.0%
! AAGAGCAAATATTTCTGAAG+AGG - chr1_1:29824095-29824114 Msa0017840:intron 30.0%
GGTTTCAAATATTCCGTATT+GGG - chr1_1:29824123-29824142 Msa0017840:intron 30.0%
TATGTCTTTCCGAACATTAA+AGG - chr1_1:29824397-29824416 Msa0017840:CDS 30.0%
AAGGATTAAAATGAAAGGCA+AGG - chr1_1:29824416-29824435 Msa0017840:CDS 30.0%
AGATAGCCACCATAAAAATT+CGG + chr1_1:29825084-29825103 None:intergenic 30.0%
TTCAACATCTGAACTTGAAA+TGG + chr1_1:29825116-29825135 None:intergenic 30.0%
ATAAAAAATTTGGCTGTCAC+AGG - chr1_1:29825453-29825472 Msa0017840:intron 30.0%
TATGACAAAGGTAGAATACA+AGG + chr1_1:29825714-29825733 None:intergenic 30.0%
!! AAACGACACTCATTTTGATA+CGG + chr1_1:29825912-29825931 None:intergenic 30.0%
!!! ATCAAAATGAGTGTCGTTTT+AGG - chr1_1:29825913-29825932 Msa0017840:intron 30.0%
GTATTAAGCATCTGGAAATT+TGG - chr1_1:29826175-29826194 Msa0017840:intron 30.0%
TATAAGTCAATCTTTGACAG+AGG + chr1_1:29826347-29826366 None:intergenic 30.0%
AAGTTCCAAAACTGAAATGA+TGG + chr1_1:29826420-29826439 None:intergenic 30.0%
!! TCGTTCTCTATTTCTACAAA+AGG + chr1_1:29826470-29826489 None:intergenic 30.0%
AAGCTTCTAACAAAATCAAC+AGG + chr1_1:29826611-29826630 None:intergenic 30.0%
AAATGTGAAAAGAGCAGTAT+TGG + chr1_1:29826634-29826653 None:intergenic 30.0%
AAATAGAAATGGTTAACGCT+AGG + chr1_1:29826837-29826856 None:intergenic 30.0%
AGCGTTAACCATTTCTATTT+AGG - chr1_1:29826837-29826856 Msa0017840:intron 30.0%
GTTAACCATTTCTATTTAGG+TGG - chr1_1:29826840-29826859 Msa0017840:intron 30.0%
GATTTCCACCTAAATAGAAA+TGG + chr1_1:29826848-29826867 None:intergenic 30.0%
GACTTAGATCCTTTAATCTT+GGG + chr1_1:29826955-29826974 None:intergenic 30.0%
CAAGATTAAAGGATCTAAGT+CGG - chr1_1:29826954-29826973 Msa0017840:CDS 30.0%
AATAACGCCATTATCCAATA+GGG + chr1_1:29826998-29827017 None:intergenic 30.0%
ACTTGATATGTCGTTCTTAT+TGG - chr1_1:29827122-29827141 Msa0017840:CDS 30.0%
CTTGATATGTCGTTCTTATT+GGG - chr1_1:29827123-29827142 Msa0017840:CDS 30.0%
!! AAGCATCGACTCTTATATTT+GGG + chr1_1:29827252-29827271 None:intergenic 30.0%
!! AAAGCATCGACTCTTATATT+TGG + chr1_1:29827253-29827272 None:intergenic 30.0%
CCATTATAGAATTCAGACTT+CGG + chr1_1:29827373-29827392 None:intergenic 30.0%
CGAAGTCTGAATTCTATAAT+GGG - chr1_1:29827371-29827390 Msa0017840:intron 30.0%
CAAAGCTGAAATTGAGAATA+AGG - chr1_1:29827510-29827529 Msa0017840:intron 30.0%
CCAAAATTAACAATGTCTTC+AGG + chr1_1:29827559-29827578 None:intergenic 30.0%
! CCTGAAGACATTGTTAATTT+TGG - chr1_1:29827556-29827575 Msa0017840:intron 30.0%
GGAAAGTTACAGAGTAAAAT+TGG - chr1_1:29827577-29827596 Msa0017840:intron 30.0%
!! TGTGCTTTAGCTTTATACTA+TGG + chr1_1:29827709-29827728 None:intergenic 30.0%
! TACTTAAATGCAAGTTGAGA+TGG - chr1_1:29827906-29827925 Msa0017840:CDS 30.0%
TAATTTATATAGGCCTGTTC+AGG - chr1_1:29828386-29828405 Msa0017840:CDS 30.0%
! TGAACTGAACTTTAAGAAGT+TGG + chr1_1:29828445-29828464 None:intergenic 30.0%
GTAGATCCAAATTCAATGAA+TGG - chr1_1:29828875-29828894 Msa0017840:intron 30.0%
TTCACTCCATTCATTGAATT+TGG + chr1_1:29828884-29828903 None:intergenic 30.0%
! TATCTTTAAAAACACACAGG+AGG + chr1_1:29828955-29828974 None:intergenic 30.0%
TACTACACTTAACAATGGTT+TGG - chr1_1:29829080-29829099 Msa0017840:CDS 30.0%
ACATAAAATTATGCCTGTCA+TGG + chr1_1:29829216-29829235 None:intergenic 30.0%
ACAACTTACAGTGAAACTTT+GGG + chr1_1:29829387-29829406 None:intergenic 30.0%
GTCCGATCACTAATATTTAT+GGG - chr1_1:29829511-29829530 Msa0017840:intron 30.0%
! AGGTATTAAGTTTGGTGAAA+TGG - chr1_1:29829648-29829667 Msa0017840:intron 30.0%
! CATCAGCTAATTTGTATGAA+TGG - chr1_1:29829698-29829717 Msa0017840:intron 30.0%
AATACTCATAACTGGTATCA+AGG + chr1_1:29830056-29830075 None:intergenic 30.0%
CTAGAAAACTAACGAATGAT+GGG - chr1_1:29830181-29830200 Msa0017840:CDS 30.0%
TCATCGACATCTTTCTTAGA+AGG + chr1_1:29822629-29822648 None:intergenic 35.0%
CAAACTTAACCATGGCATAT+TGG + chr1_1:29822658-29822677 None:intergenic 35.0%
CAATATGCCATGGTTAAGTT+TGG - chr1_1:29822656-29822675 Msa0017840:CDS 35.0%
TACATTCCCAAACTTAACCA+TGG + chr1_1:29822666-29822685 None:intergenic 35.0%
!! GAAAGTTGATGTTCAACTTC+AGG - chr1_1:29822790-29822809 Msa0017840:CDS 35.0%
AAAATTACTTGGGTGTCTCT+TGG - chr1_1:29822919-29822938 Msa0017840:CDS 35.0%
! TGTGTGTAAATAGTGGGAAA+AGG - chr1_1:29822946-29822965 Msa0017840:CDS 35.0%
! GTAAATAGTGGGAAAAGGTT+TGG - chr1_1:29822951-29822970 Msa0017840:CDS 35.0%
TCTGTAAATAGTAGTAGAGC+TGG - chr1_1:29822993-29823012 Msa0017840:CDS 35.0%
AGAGCTGGAAATAAACACAT+AGG - chr1_1:29823008-29823027 Msa0017840:CDS 35.0%
AATTTGTGGTTCCTGTTTGA+TGG - chr1_1:29823130-29823149 Msa0017840:intron 35.0%
!! GTTTGGATTTTGATGTTCTG+TGG - chr1_1:29823285-29823304 Msa0017840:intron 35.0%
TCAGGTATATATTCCGAAGA+AGG - chr1_1:29823317-29823336 Msa0017840:intron 35.0%
! GGAGTGATAAGTTTAAGACT+GGG - chr1_1:29823343-29823362 Msa0017840:intron 35.0%
!! AGATCAAGTTGAATGAGACA+AGG - chr1_1:29823388-29823407 Msa0017840:intron 35.0%
!! GATCAAGTTGAATGAGACAA+GGG - chr1_1:29823389-29823408 Msa0017840:intron 35.0%
GAGACAAGGGAAATAACTAT+TGG - chr1_1:29823402-29823421 Msa0017840:intron 35.0%
! GGTTACTTTGAATTTGACCA+TGG - chr1_1:29823480-29823499 Msa0017840:intron 35.0%
TACTTTGAATTTGACCATGG+AGG - chr1_1:29823483-29823502 Msa0017840:intron 35.0%
TTTAGTCCCTACTTTGCTTT+AGG - chr1_1:29823656-29823675 Msa0017840:intron 35.0%
TTAGTCCCTACTTTGCTTTA+GGG - chr1_1:29823657-29823676 Msa0017840:intron 35.0%
TTAGTCCCTAAAGCAAAGTA+GGG + chr1_1:29823665-29823684 None:intergenic 35.0%
TTTAGTCCCTAAAGCAAAGT+AGG + chr1_1:29823666-29823685 None:intergenic 35.0%
GTAATATGCAATGGCAGTTA+TGG - chr1_1:29823705-29823724 Msa0017840:intron 35.0%
ACTATATGGCACATTTATGG+CGG + chr1_1:29823786-29823805 None:intergenic 35.0%
GCTACTATATGGCACATTTA+TGG + chr1_1:29823789-29823808 None:intergenic 35.0%
!!! CTGCAATTTTGGCTACTATA+TGG + chr1_1:29823800-29823819 None:intergenic 35.0%
! GACCCAAATTTCTGCAATTT+TGG + chr1_1:29823811-29823830 None:intergenic 35.0%
CAAAAGCAATTTACAGTCAG+CGG + chr1_1:29824056-29824075 None:intergenic 35.0%
! AAATATTTCTGAAGAGGCTC+TGG - chr1_1:29824101-29824120 Msa0017840:intron 35.0%
! AATATTTCTGAAGAGGCTCT+GGG - chr1_1:29824102-29824121 Msa0017840:intron 35.0%
GGGTTTCAAATATTCCGTAT+TGG - chr1_1:29824122-29824141 Msa0017840:intron 35.0%
AGTCACAGATGAAGAGAAAT+AGG - chr1_1:29824158-29824177 Msa0017840:intron 35.0%
ACAGATGAAGAGAAATAGGA+TGG - chr1_1:29824162-29824181 Msa0017840:intron 35.0%
TAGGATGGTTGTTAAATTGG+TGG - chr1_1:29824177-29824196 Msa0017840:intron 35.0%
ATGGTTGTTAAATTGGTGGA+AGG - chr1_1:29824181-29824200 Msa0017840:intron 35.0%
! ATAATTTGTAATTCCCTCCG+TGG + chr1_1:29824209-29824228 None:intergenic 35.0%
ACGGAGGGAATTACAAATTA+TGG - chr1_1:29824208-29824227 Msa0017840:intron 35.0%
GGGAATTACAAATTATGGAC+AGG - chr1_1:29824213-29824232 Msa0017840:intron 35.0%
! ATAAATGTGAAGCGTTTCGT+AGG - chr1_1:29824287-29824306 Msa0017840:CDS 35.0%
! TAAATGTGAAGCGTTTCGTA+GGG - chr1_1:29824288-29824307 Msa0017840:CDS 35.0%
TTCTTAGAGGAACGTGTAAA+AGG - chr1_1:29824328-29824347 Msa0017840:CDS 35.0%
GTTCTTCTACTAGTGTATAC+TGG - chr1_1:29824460-29824479 Msa0017840:CDS 35.0%
TTGGAGACCATTTGTAATGA+TGG + chr1_1:29824629-29824648 None:intergenic 35.0%
ATCCTTTCAAAAGGATGGAA+AGG - chr1_1:29824677-29824696 Msa0017840:intron 35.0%
! ATCCTTTCCATCCTTTTGAA+AGG + chr1_1:29824682-29824701 None:intergenic 35.0%
AAAAGGATGGAAAGGATATC+TGG - chr1_1:29824685-29824704 Msa0017840:intron 35.0%
AACCAATCCATTACAAACCA+TGG - chr1_1:29824729-29824748 Msa0017840:intron 35.0%
! AATTCAGCCATGGTTTGTAA+TGG + chr1_1:29824739-29824758 None:intergenic 35.0%
TGTTCTTCTTAATTCAGCCA+TGG + chr1_1:29824749-29824768 None:intergenic 35.0%
TGGCTGAATTAAGAAGAACA+AGG - chr1_1:29824749-29824768 Msa0017840:intron 35.0%
GATTGACACAAACTACAGAA+AGG + chr1_1:29824846-29824865 None:intergenic 35.0%
! ATTGGTAGCAATATCACAAG+GGG + chr1_1:29824965-29824984 None:intergenic 35.0%
! GATTGGTAGCAATATCACAA+GGG + chr1_1:29824966-29824985 None:intergenic 35.0%
! TGATTGGTAGCAATATCACA+AGG + chr1_1:29824967-29824986 None:intergenic 35.0%
TACCTGGTCATTAAAACTCA+TGG - chr1_1:29825013-29825032 Msa0017840:CDS 35.0%
!! AACCATGAGTTTTAATGACC+AGG + chr1_1:29825018-29825037 None:intergenic 35.0%
! GACTAGATGCCGAATTTTTA+TGG - chr1_1:29825072-29825091 Msa0017840:intron 35.0%
! TAGATGCCGAATTTTTATGG+TGG - chr1_1:29825075-29825094 Msa0017840:intron 35.0%
AAGTACGGATTCAGTTACAT+TGG + chr1_1:29825490-29825509 None:intergenic 35.0%
TGATGATACTACAACTGTTC+TGG - chr1_1:29825545-29825564 Msa0017840:CDS 35.0%
GATGATACTACAACTGTTCT+GGG - chr1_1:29825546-29825565 Msa0017840:CDS 35.0%
ATGATACTACAACTGTTCTG+GGG - chr1_1:29825547-29825566 Msa0017840:CDS 35.0%
AAAGACAAGGTCTTCCTAAA+TGG - chr1_1:29825573-29825592 Msa0017840:CDS 35.0%
GATTAAAAGTGAACCTGATG+AGG + chr1_1:29825675-29825694 None:intergenic 35.0%
CTTACTTTACATACGAGTCA+TGG - chr1_1:29825753-29825772 Msa0017840:intron 35.0%
! ACAACCTTTTTCCACCATAT+GGG + chr1_1:29825785-29825804 None:intergenic 35.0%
! AACAACCTTTTTCCACCATA+TGG + chr1_1:29825786-29825805 None:intergenic 35.0%
! GTAGTGTGCAGAGTATTAAT+TGG - chr1_1:29826043-29826062 Msa0017840:intron 35.0%
! TGTGCAGAGTATTAATTGGA+GGG - chr1_1:29826047-29826066 Msa0017840:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG - chr1_1:29826111-29826130 Msa0017840:intron 35.0%
AGTAAGTGTATGTAGAGACA+TGG + chr1_1:29826310-29826329 None:intergenic 35.0%
GCTTGCAAAGTCAACATAAT+TGG + chr1_1:29826677-29826696 None:intergenic 35.0%
GTATATTATCTGATGCAGGA+AGG - chr1_1:29826896-29826915 Msa0017840:CDS 35.0%
AGATTACTAACAACCAAGAG+TGG + chr1_1:29826931-29826950 None:intergenic 35.0%
AGTAATCTGCCCAAGATTAA+AGG - chr1_1:29826943-29826962 Msa0017840:CDS 35.0%
CGACTTAGATCCTTTAATCT+TGG + chr1_1:29826956-29826975 None:intergenic 35.0%
TAAATCTTTCCAGTCCCTAT+TGG - chr1_1:29826981-29827000 Msa0017840:CDS 35.0%
CAATAACGCCATTATCCAAT+AGG + chr1_1:29826999-29827018 None:intergenic 35.0%
TCAGTATTTGTTTGGCAAAG+AGG - chr1_1:29827068-29827087 Msa0017840:CDS 35.0%
CAGTATTTGTTTGGCAAAGA+GGG - chr1_1:29827069-29827088 Msa0017840:CDS 35.0%
AGTATTTGTTTGGCAAAGAG+GGG - chr1_1:29827070-29827089 Msa0017840:CDS 35.0%
AAGCATTCTTCTCAAGCTAT+TGG - chr1_1:29827211-29827230 Msa0017840:intron 35.0%
GTCTTTGTGGATAAAACAGT+TGG + chr1_1:29827282-29827301 None:intergenic 35.0%
GATGTCATTGTCTGAAAGAA+TGG + chr1_1:29827304-29827323 None:intergenic 35.0%
ACAATGACATCTGATTGTCT+CGG - chr1_1:29827313-29827332 Msa0017840:intron 35.0%
CCGAAGTCTGAATTCTATAA+TGG - chr1_1:29827370-29827389 Msa0017840:intron 35.0%
TGTTCAGATCTGAGCATATA+AGG - chr1_1:29827482-29827501 Msa0017840:intron 35.0%
! TGCAAATTTGCTCCTACAAA+TGG + chr1_1:29827641-29827660 None:intergenic 35.0%
GTTTCGTTAAGACAGGTAAT+TGG - chr1_1:29827794-29827813 Msa0017840:CDS 35.0%
GTTTGTTCATTATCTGCACA+TGG - chr1_1:29827945-29827964 Msa0017840:CDS 35.0%
AGTGGTCAAATACAACTTAG+AGG + chr1_1:29828014-29828033 None:intergenic 35.0%
AGAACTTATCTCCAAGAACT+GGG + chr1_1:29828076-29828095 None:intergenic 35.0%
AATTTCCCCTTCACAAAACA+AGG - chr1_1:29828146-29828165 Msa0017840:intron 35.0%
!!! ACTATGCCTTGTTTTGTGAA+GGG + chr1_1:29828155-29828174 None:intergenic 35.0%
!!! AACTATGCCTTGTTTTGTGA+AGG + chr1_1:29828156-29828175 None:intergenic 35.0%
ATTTCTCAGTGAACCAACAA+GGG + chr1_1:29828264-29828283 None:intergenic 35.0%
!! TACTATTAAGCATTGGTCAC+CGG + chr1_1:29828512-29828531 None:intergenic 35.0%
TGCAAGATTGAAAACTGAAG+CGG - chr1_1:29829034-29829053 Msa0017840:CDS 35.0%
CAGTGTACTACACTTAACAA+TGG - chr1_1:29829075-29829094 Msa0017840:CDS 35.0%
ACCAAATTGCTGTAATTGTG+CGG + chr1_1:29829129-29829148 None:intergenic 35.0%
! GGCATAATTTTATGTCATGC+AGG - chr1_1:29829221-29829240 Msa0017840:CDS 35.0%
GACAACTTACAGTGAAACTT+TGG + chr1_1:29829388-29829407 None:intergenic 35.0%
GGTCCGATCACTAATATTTA+TGG - chr1_1:29829510-29829529 Msa0017840:intron 35.0%
GGCCCATAAATATTAGTGAT+CGG + chr1_1:29829516-29829535 None:intergenic 35.0%
!! CGATTTGGAGGTATTAAGTT+TGG - chr1_1:29829640-29829659 Msa0017840:intron 35.0%
GACAATAACTTTGCTCCATA+TGG + chr1_1:29829880-29829899 None:intergenic 35.0%
! CAAAAGTCTAGTTTGGTCTA+GGG + chr1_1:29829995-29830014 None:intergenic 35.0%
! TCAAAAGTCTAGTTTGGTCT+AGG + chr1_1:29829996-29830015 None:intergenic 35.0%
CACAGTTCAAAAGTCTAGTT+TGG + chr1_1:29830002-29830021 None:intergenic 35.0%
GTATCAAGGAAACAACATTC+AGG + chr1_1:29830042-29830061 None:intergenic 35.0%
GCATTCAAGAAAATCAGATC+AGG + chr1_1:29830092-29830111 None:intergenic 35.0%
!!! ATTCGTTAGTTTTCTAGCAG+AGG + chr1_1:29830178-29830197 None:intergenic 35.0%
GCTAGAAAACTAACGAATGA+TGG - chr1_1:29830180-29830199 Msa0017840:CDS 35.0%
GTCCATTTCTGTGTAGATGT+TGG + chr1_1:29822390-29822409 None:intergenic 40.0%
TTGAGGATTTCAGCGTTTGA+TGG + chr1_1:29822434-29822453 None:intergenic 40.0%
AAAGCTTGCGTCATGTTCTT+CGG - chr1_1:29822491-29822510 Msa0017840:three_prime_UTR 40.0%
GTCATGTTCTTCGGTCAATA+CGG - chr1_1:29822500-29822519 Msa0017840:three_prime_UTR 40.0%
!! ATAGGAGTTGATTTGGTGAC+TGG + chr1_1:29822531-29822550 None:intergenic 40.0%
!! CAATCCGCTTTTGATTCCTT+CGG - chr1_1:29822575-29822594 Msa0017840:three_prime_UTR 40.0%
ATCACCGAAGGAATCAAAAG+CGG + chr1_1:29822582-29822601 None:intergenic 40.0%
TTCTTAGAAGGATCAAACCC+CGG + chr1_1:29822617-29822636 None:intergenic 40.0%
TGAACGTTACCAATATGCCA+TGG - chr1_1:29822646-29822665 Msa0017840:CDS 40.0%
AAATGTGGGTCAGCTTCATT+TGG - chr1_1:29822841-29822860 Msa0017840:CDS 40.0%
! AATAGTGGGAAAAGGTTTGG+TGG - chr1_1:29822954-29822973 Msa0017840:CDS 40.0%
GTTCTGTGGGTGTTAATTTC+AGG - chr1_1:29823299-29823318 Msa0017840:intron 40.0%
TTATCACTCCGAACCTTCTT+CGG + chr1_1:29823333-29823352 None:intergenic 40.0%
! CGGAGTGATAAGTTTAAGAC+TGG - chr1_1:29823342-29823361 Msa0017840:intron 40.0%
TATTGGTAGACTGCCTGTTA+TGG - chr1_1:29823419-29823438 Msa0017840:intron 40.0%
AGATCAGACTTGACCATAAC+AGG + chr1_1:29823435-29823454 None:intergenic 40.0%
TGGATGAGTGAAGCTGAAAA+AGG - chr1_1:29823459-29823478 Msa0017840:intron 40.0%
ATATGCAATGGCAGTTATGG+TGG - chr1_1:29823708-29823727 Msa0017840:intron 40.0%
TATGGCTGTATGGAATACTG+TGG + chr1_1:29823838-29823857 None:intergenic 40.0%
CAGTATTGTCTATGGCTGTA+TGG + chr1_1:29823848-29823867 None:intergenic 40.0%
TTGAAAGCAACAGCCCAATA+CGG + chr1_1:29824139-29824158 None:intergenic 40.0%
TAAATTGGTGGAAGGTTCCA+CGG - chr1_1:29824189-29824208 Msa0017840:intron 40.0%
ACAAATTATGGACAGGCAGA+TGG - chr1_1:29824220-29824239 Msa0017840:intron 40.0%
! AAATGTGAAGCGTTTCGTAG+GGG - chr1_1:29824289-29824308 Msa0017840:CDS 40.0%
! GAACGCTCTTCTTTTCTTAG+AGG - chr1_1:29824315-29824334 Msa0017840:CDS 40.0%
! AAAATGAAAGGCAAGGTACC+TGG - chr1_1:29824423-29824442 Msa0017840:CDS 40.0%
GAACATCTCGATCTCCATAA+AGG + chr1_1:29824579-29824598 None:intergenic 40.0%
GACGCTTCCATCATTACAAA+TGG - chr1_1:29824619-29824638 Msa0017840:intron 40.0%
CATGGACACATCCTTTCAAA+AGG - chr1_1:29824668-29824687 Msa0017840:intron 40.0%
GACACATCCTTTCAAAAGGA+TGG - chr1_1:29824672-29824691 Msa0017840:intron 40.0%
!! AGCCATGGTTTGTAATGGAT+TGG + chr1_1:29824734-29824753 None:intergenic 40.0%
ACAAGTTCAGTACACAGGAA+AGG - chr1_1:29824774-29824793 Msa0017840:CDS 40.0%
TAACTTTCATTCGGTCAGCT+AGG + chr1_1:29824881-29824900 None:intergenic 40.0%
TAATGGAAGCTTATGGTTGC+AGG - chr1_1:29825367-29825386 Msa0017840:intron 40.0%
! TCCACAATTTTCACCATCTG+GGG + chr1_1:29825430-29825449 None:intergenic 40.0%
! GTCCACAATTTTCACCATCT+GGG + chr1_1:29825431-29825450 None:intergenic 40.0%
! AGTCCACAATTTTCACCATC+TGG + chr1_1:29825432-29825451 None:intergenic 40.0%
!! TGTTCTGGGGAAAAAAGACA+AGG - chr1_1:29825560-29825579 Msa0017840:CDS 40.0%
CAGAGCTACGAAATAGAAGA+CGG - chr1_1:29825637-29825656 Msa0017840:CDS 40.0%
! AGAACCCATATGGTGGAAAA+AGG - chr1_1:29825778-29825797 Msa0017840:intron 40.0%
! TCTGCGAGTTGAAATGCTTT+AGG + chr1_1:29825844-29825863 None:intergenic 40.0%
! GTGTGCAGAGTATTAATTGG+AGG - chr1_1:29826046-29826065 Msa0017840:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr1_1:29826151-29826170 Msa0017840:intron 40.0%
! GCTTGCCATCATTTCAGTTT+TGG - chr1_1:29826412-29826431 Msa0017840:intron 40.0%
!!! TTTCCCTATTTTTTTCCCCC+TGG - chr1_1:29826714-29826733 Msa0017840:intron 40.0%
GAACCAGGGGGAAAAAAATA+GGG + chr1_1:29826720-29826739 None:intergenic 40.0%
TGAACCAGGGGGAAAAAAAT+AGG + chr1_1:29826721-29826740 None:intergenic 40.0%
GTGCGTATATTATCTGATGC+AGG - chr1_1:29826892-29826911 Msa0017840:CDS 40.0%
TACTAACAACCAAGAGTGGA+TGG + chr1_1:29826927-29826946 None:intergenic 40.0%
TTCCAGTCCCTATTGGATAA+TGG - chr1_1:29826988-29827007 Msa0017840:CDS 40.0%
AATGGCGTTATTGAGCTGAT+TGG - chr1_1:29827006-29827025 Msa0017840:CDS 40.0%
TTGAAGTCCTCTTCTTCTTC+AGG + chr1_1:29827033-29827052 None:intergenic 40.0%
! TGGGGTGTTCAGTATTTGTT+TGG - chr1_1:29827060-29827079 Msa0017840:CDS 40.0%
! GCATGGTCATGATTTGCAAA+TGG + chr1_1:29827168-29827187 None:intergenic 40.0%
TTGCAAATCATGACCATGCT+AGG - chr1_1:29827169-29827188 Msa0017840:intron 40.0%
AGCTTGAGAAGAATGCTTCT+GGG + chr1_1:29827209-29827228 None:intergenic 40.0%
TAGCTTGAGAAGAATGCTTC+TGG + chr1_1:29827210-29827229 None:intergenic 40.0%
GTCTGAAAGAATGGTCTTTG+TGG + chr1_1:29827295-29827314 None:intergenic 40.0%
! TAATGGGCAGAATGCAATTG+TGG - chr1_1:29827387-29827406 Msa0017840:intron 40.0%
!! GCCTTGAATCTTGATGATGA+TGG - chr1_1:29827611-29827630 Msa0017840:intron 40.0%
GCCATCATCATCAAGATTCA+AGG + chr1_1:29827615-29827634 None:intergenic 40.0%
! GATGATGGCTTTCCATTTGT+AGG - chr1_1:29827626-29827645 Msa0017840:intron 40.0%
CAGAGTGGTGACATTATCAT+CGG - chr1_1:29827659-29827678 Msa0017840:intron 40.0%
AGAGTGGTGACATTATCATC+GGG - chr1_1:29827660-29827679 Msa0017840:intron 40.0%
! CTTTTGAACATAACCCCTCT+CGG + chr1_1:29827732-29827751 None:intergenic 40.0%
!! TGCTGTTGTTTCGTTAAGAC+AGG - chr1_1:29827787-29827806 Msa0017840:CDS 40.0%
TCGTTAAGACAGGTAATTGG+TGG - chr1_1:29827797-29827816 Msa0017840:CDS 40.0%
! TGATGATGCATGCTGTCTTA+TGG - chr1_1:29827838-29827857 Msa0017840:CDS 40.0%
GAGAACTTATCTCCAAGAAC+TGG + chr1_1:29828077-29828096 None:intergenic 40.0%
GATAAGTTCTCCAGTATGCA+TGG - chr1_1:29828086-29828105 Msa0017840:intron 40.0%
!!! CATGGACAGAAAGGTGTTTT+GGG - chr1_1:29828104-29828123 Msa0017840:intron 40.0%
!!! GAAAGGTGTTTTGGGTTTTC+TGG - chr1_1:29828112-29828131 Msa0017840:intron 40.0%
!!! TTTGGGTTTTCTGGAATCTC+AGG - chr1_1:29828121-29828140 Msa0017840:intron 40.0%
!!! CTATGCCTTGTTTTGTGAAG+GGG + chr1_1:29828154-29828173 None:intergenic 40.0%
ACAACTACAAGAAGCTGCTT+TGG - chr1_1:29828226-29828245 Msa0017840:CDS 40.0%
! CAACTACAAGAAGCTGCTTT+GGG - chr1_1:29828227-29828246 Msa0017840:CDS 40.0%
CATTTCTCAGTGAACCAACA+AGG + chr1_1:29828265-29828284 None:intergenic 40.0%
AGATTACCTATGAAGCTGGT+CGG + chr1_1:29828324-29828343 None:intergenic 40.0%
TGGAAGATTACCTATGAAGC+TGG + chr1_1:29828328-29828347 None:intergenic 40.0%
TTCAAGCTCTTTCCCAAACT+AGG + chr1_1:29828486-29828505 None:intergenic 40.0%
TGGGAAAGAGCTTGAAATAC+CGG - chr1_1:29828490-29828509 Msa0017840:intron 40.0%
CCTAGCAATGAGCACATTAT+TGG + chr1_1:29828598-29828617 None:intergenic 40.0%
CCAATAATGTGCTCATTGCT+AGG - chr1_1:29828595-29828614 Msa0017840:intron 40.0%
!! AGTACTGACATTCAGGCTTT+CGG + chr1_1:29828623-29828642 None:intergenic 40.0%
ACCGCACAATTACAGCAATT+TGG - chr1_1:29829125-29829144 Msa0017840:CDS 40.0%
CATGCAGGTCATTTCTATCA+AGG - chr1_1:29829236-29829255 Msa0017840:intron 40.0%
TTGTAGATTGCATTACCTCC+AGG - chr1_1:29829336-29829355 Msa0017840:intron 40.0%
! TAAATTTAAAGCGAGCCTGG+AGG + chr1_1:29829354-29829373 None:intergenic 40.0%
! TCCAGGCTCGCTTTAAATTT+AGG - chr1_1:29829353-29829372 Msa0017840:intron 40.0%
! TCCTAAATTTAAAGCGAGCC+TGG + chr1_1:29829357-29829376 None:intergenic 40.0%
CCTGAATTTGACCTTGTCTT+CGG + chr1_1:29829569-29829588 None:intergenic 40.0%
AAGGTCAAATTCAGGAACAC+TGG - chr1_1:29829574-29829593 Msa0017840:intron 40.0%
! TATCTGAGACGAATCACTCA+GGG + chr1_1:29829731-29829750 None:intergenic 40.0%
TGGAGCAAAGTTATTGTCTC+AGG - chr1_1:29829882-29829901 Msa0017840:CDS 40.0%
GAACTGTGTGCATATCAGTT+TGG - chr1_1:29830014-29830033 Msa0017840:CDS 40.0%
CGCCAACATCTACACAGAAA+TGG - chr1_1:29822385-29822404 Msa0017840:three_prime_UTR 45.0%
GATCTTCATCGTTGATGTCG+AGG + chr1_1:29822412-29822431 None:intergenic 45.0%
GCTGAAATCCTCAACGAACT+CGG - chr1_1:29822440-29822459 Msa0017840:three_prime_UTR 45.0%
! CACTTGATCGACCGAAGTTT+TGG - chr1_1:29822687-29822706 Msa0017840:CDS 45.0%
CCTTCACCACACCAAAACTT+CGG + chr1_1:29822701-29822720 None:intergenic 45.0%
!! CGAAGTTTTGGTGTGGTGAA+GGG - chr1_1:29822699-29822718 Msa0017840:CDS 45.0%
TGGTCAAGTCTGATCTTTGC+TGG - chr1_1:29823439-29823458 Msa0017840:intron 45.0%
!! GGATTTTGACCTTGGAGATG+TGG - chr1_1:29823732-29823751 Msa0017840:intron 45.0%
GTGAATGGTGGTCGATATTG+CGG - chr1_1:29823754-29823773 Msa0017840:intron 45.0%
TGAATGGTGGTCGATATTGC+GGG - chr1_1:29823755-29823774 Msa0017840:intron 45.0%
TCTCTTTGCATCAATCCGTG+AGG - chr1_1:29824258-29824277 Msa0017840:CDS 45.0%
CACATTTATCGTCTGCCTCA+CGG + chr1_1:29824276-29824295 None:intergenic 45.0%
TCGTCAATAGATTCTGCAGG+TGG + chr1_1:29824364-29824383 None:intergenic 45.0%
CACTCGTCAATAGATTCTGC+AGG + chr1_1:29824367-29824386 None:intergenic 45.0%
!!! AACTCAAGCCTCTTTTTCGG+CGG + chr1_1:29824486-29824505 None:intergenic 45.0%
! GCCAACTCAAGCCTCTTTTT+CGG + chr1_1:29824489-29824508 None:intergenic 45.0%
!! AAAAAGAGGCTTGAGTTGGC+TGG - chr1_1:29824489-29824508 Msa0017840:intron 45.0%
!!! CTCCAAAGAGCGTTTTCTAC+TGG - chr1_1:29824643-29824662 Msa0017840:intron 45.0%
CTCCAGTAGAAAACGCTCTT+TGG + chr1_1:29824648-29824667 None:intergenic 45.0%
GATGGAAAGGATATCTGGTG+TGG - chr1_1:29824690-29824709 Msa0017840:intron 45.0%
AGGCAACAAGTTCAGTACAC+AGG - chr1_1:29824769-29824788 Msa0017840:CDS 45.0%
GTTCAGTACACAGGAAAGGT+CGG - chr1_1:29824778-29824797 Msa0017840:CDS 45.0%
TTCAGTACACAGGAAAGGTC+GGG - chr1_1:29824779-29824798 Msa0017840:CDS 45.0%
ATTCGGCATCTAGTCTACAC+AGG + chr1_1:29825067-29825086 None:intergenic 45.0%
! ATCGACTTCCCAACCTTTAC+AGG - chr1_1:29825192-29825211 Msa0017840:CDS 45.0%
TCGACTTCCCAACCTTTACA+GGG - chr1_1:29825193-29825212 Msa0017840:CDS 45.0%
GATCAGTCCCTGTAAAGGTT+GGG + chr1_1:29825203-29825222 None:intergenic 45.0%
AGATCAGTCCCTGTAAAGGT+TGG + chr1_1:29825204-29825223 None:intergenic 45.0%
GACTAGATCAGTCCCTGTAA+AGG + chr1_1:29825208-29825227 None:intergenic 45.0%
TACAGGGACTGATCTAGTCT+CGG - chr1_1:29825209-29825228 Msa0017840:CDS 45.0%
TGTTTCCTTTCTACCCCAGA+TGG - chr1_1:29825414-29825433 Msa0017840:intron 45.0%
! TTTCACCATCTGGGGTAGAA+AGG + chr1_1:29825422-29825441 None:intergenic 45.0%
ACCCCAGATGGTGAAAATTG+TGG - chr1_1:29825426-29825445 Msa0017840:intron 45.0%
ATCGAACAGCTGAGGAAGTA+CGG + chr1_1:29825505-29825524 None:intergenic 45.0%
TTCCTCAGCTGTTCGATTGT+GGG - chr1_1:29825508-29825527 Msa0017840:CDS 45.0%
AGGTCTTCCTAAATGGTGAC+TGG - chr1_1:29825580-29825599 Msa0017840:CDS 45.0%
GGTCTTCCTAAATGGTGACT+GGG - chr1_1:29825581-29825600 Msa0017840:CDS 45.0%
TTCCTAAATGGTGACTGGGT+TGG - chr1_1:29825585-29825604 Msa0017840:CDS 45.0%
! TAGCTCTGCTACAAATGACG+TGG + chr1_1:29825625-29825644 None:intergenic 45.0%
GAGAAATGAGTTGCCTCATC+AGG - chr1_1:29825659-29825678 Msa0017840:CDS 45.0%
AGTCATGGAGAGAACCCATA+TGG - chr1_1:29825768-29825787 Msa0017840:intron 45.0%
!! CGACACTCATTTTGATACGG+AGG + chr1_1:29825909-29825928 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr1_1:29826150-29826169 Msa0017840:intron 45.0%
TGCAAGCTCACAACTCACAA+GGG + chr1_1:29826569-29826588 None:intergenic 45.0%
AAGGATTCTCCATCCACTCT+TGG - chr1_1:29826915-29826934 Msa0017840:CDS 45.0%
! GATTGGTCCTGAAGAAGAAG+AGG - chr1_1:29827023-29827042 Msa0017840:CDS 45.0%
AAGAGGACTTCAAGACTGCT+TGG - chr1_1:29827040-29827059 Msa0017840:CDS 45.0%
AGAGGACTTCAAGACTGCTT+GGG - chr1_1:29827041-29827060 Msa0017840:CDS 45.0%
TTGGTACAACACTCCTAGCA+TGG + chr1_1:29827185-29827204 None:intergenic 45.0%
!! GAGAAGAATGCTTCTGGGAT+TGG + chr1_1:29827204-29827223 None:intergenic 45.0%
TCTGATTGTCTCGGAAAACC+TGG - chr1_1:29827322-29827341 Msa0017840:intron 45.0%
CTCGGAAAACCTGGATATCT+AGG - chr1_1:29827331-29827350 Msa0017840:intron 45.0%
GTGGCTGTCAATGTACATCT+CGG - chr1_1:29827406-29827425 Msa0017840:intron 45.0%
GTAGGAGCAAATTTGCAGAG+TGG - chr1_1:29827644-29827663 Msa0017840:intron 45.0%
TAAAGCTAAAGCACACCGAG+AGG - chr1_1:29827714-29827733 Msa0017840:intron 45.0%
AAAGCTAAAGCACACCGAGA+GGG - chr1_1:29827715-29827734 Msa0017840:intron 45.0%
CGAGAGGGGTTATGTTCAAA+AGG - chr1_1:29827730-29827749 Msa0017840:intron 45.0%
TGTGCTGTCTTCGAATGATG+AGG - chr1_1:29827754-29827773 Msa0017840:CDS 45.0%
GTGCTGTCTTCGAATGATGA+GGG - chr1_1:29827755-29827774 Msa0017840:CDS 45.0%
TGCTGTCTTCGAATGATGAG+GGG - chr1_1:29827756-29827775 Msa0017840:CDS 45.0%
TCCAGTATGCATGGACAGAA+AGG - chr1_1:29828095-29828114 Msa0017840:intron 45.0%
ACCTTTCTGTCCATGCATAC+TGG + chr1_1:29828099-29828118 None:intergenic 45.0%
!!! GCATGGACAGAAAGGTGTTT+TGG - chr1_1:29828103-29828122 Msa0017840:intron 45.0%
!! ACAAGAAGCTGCTTTGGGAA+AGG - chr1_1:29828232-29828251 Msa0017840:CDS 45.0%
!! CAAGAAGCTGCTTTGGGAAA+GGG - chr1_1:29828233-29828252 Msa0017840:CDS 45.0%
TCAACAGAGGAAGTGGAGAA+AGG + chr1_1:29828293-29828312 None:intergenic 45.0%
AATGGCTTCAACAGAGGAAG+TGG + chr1_1:29828300-29828319 None:intergenic 45.0%
GAAGTTGGCAGTGCATAGTT+TGG + chr1_1:29828430-29828449 None:intergenic 45.0%
!! GGACACTAGTACTGACATTC+AGG + chr1_1:29828630-29828649 None:intergenic 45.0%
TCACTGCTTCTTTGTTGCGT+TGG + chr1_1:29828651-29828670 None:intergenic 45.0%
GAAGCGGTAATTGAGCAGTT+CGG - chr1_1:29829050-29829069 Msa0017840:CDS 45.0%
TGCTGTAATTGTGCGGTGAA+CGG + chr1_1:29829122-29829141 None:intergenic 45.0%
TCTCTGAACTGAACCATGAC+AGG - chr1_1:29829200-29829219 Msa0017840:CDS 45.0%
GCAGGTCATTTCTATCAAGG+AGG - chr1_1:29829239-29829258 Msa0017840:intron 45.0%
!!! ACAGAGCTGGCTTTTCAAGA+TGG - chr1_1:29829449-29829468 Msa0017840:intron 45.0%
!!! CAGAGCTGGCTTTTCAAGAT+GGG - chr1_1:29829450-29829469 Msa0017840:intron 45.0%
!!! AGAGCTGGCTTTTCAAGATG+GGG - chr1_1:29829451-29829470 Msa0017840:intron 45.0%
GGGAACGAACGAGTATACAA+CGG - chr1_1:29829472-29829491 Msa0017840:intron 45.0%
GGAACGAACGAGTATACAAC+GGG - chr1_1:29829473-29829492 Msa0017840:intron 45.0%
TGACCTTGTCTTCGGACATA+TGG + chr1_1:29829561-29829580 None:intergenic 45.0%
CCGAAGACAAGGTCAAATTC+AGG - chr1_1:29829566-29829585 Msa0017840:intron 45.0%
! GTATCTGAGACGAATCACTC+AGG + chr1_1:29829732-29829751 None:intergenic 45.0%
TGCAAATGTGATCTTGCGAC+CGG - chr1_1:29829777-29829796 Msa0017840:CDS 45.0%
GATTCACAGAAACGGCAGTA+CGG + chr1_1:29829829-29829848 None:intergenic 45.0%
! CATCGGCTGATTCACAGAAA+CGG + chr1_1:29829837-29829856 None:intergenic 45.0%
ATCAGCCGATGACATTGTTG+TGG - chr1_1:29829846-29829865 Msa0017840:CDS 45.0%
CTTTGCTCCATATGGAATGC+TGG + chr1_1:29829872-29829891 None:intergenic 45.0%
!! TTTTCTAGCAGAGGAGCTTC+TGG + chr1_1:29830169-29830188 None:intergenic 45.0%
!! AAAATTATTATATTCAATAA+AGG + chr1_1:29826201-29826220 None:intergenic 5.0%
CGTAACAGTGAGATCACCGA+AGG + chr1_1:29822594-29822613 None:intergenic 50.0%
!! GATCGACCGAAGTTTTGGTG+TGG - chr1_1:29822692-29822711 Msa0017840:CDS 50.0%
!! CCGAAGTTTTGGTGTGGTGA+AGG - chr1_1:29822698-29822717 Msa0017840:CDS 50.0%
AGATGCTTCCGAGACATGCT+AGG - chr1_1:29822738-29822757 Msa0017840:CDS 50.0%
CTCTGCAACCTAGCATGTCT+CGG + chr1_1:29822749-29822768 None:intergenic 50.0%
TGATCAGGAAGTAGCCTCCA+TGG + chr1_1:29823500-29823519 None:intergenic 50.0%
TGGAGGCTACTTCCTGATCA+AGG - chr1_1:29823500-29823519 Msa0017840:intron 50.0%
GGAGGCTACTTCCTGATCAA+GGG - chr1_1:29823501-29823520 Msa0017840:intron 50.0%
TGCAATGGCAGTTATGGTGG+CGG - chr1_1:29823711-29823730 Msa0017840:intron 50.0%
!!! ATGGTGGCGGATTTTGACCT+TGG - chr1_1:29823724-29823743 Msa0017840:intron 50.0%
GACCTTGGAGATGTGGTGAA+TGG - chr1_1:29823739-29823758 Msa0017840:intron 50.0%
CACCATTCACCACATCTCCA+AGG + chr1_1:29823744-29823763 None:intergenic 50.0%
CTTGGAGATGTGGTGAATGG+TGG - chr1_1:29823742-29823761 Msa0017840:intron 50.0%
GGCTGTATGGAATACTGTGG+CGG + chr1_1:29823835-29823854 None:intergenic 50.0%
GTACCTGGCTTACATGGTGA+AGG - chr1_1:29824438-29824457 Msa0017840:CDS 50.0%
GAACCTTCACCATGTAAGCC+AGG + chr1_1:29824444-29824463 None:intergenic 50.0%
TATACTGGCCGCCGAAAAAG+AGG - chr1_1:29824475-29824494 Msa0017840:CDS 50.0%
GCCGAAAAAGAGGCTTGAGT+TGG - chr1_1:29824485-29824504 Msa0017840:intron 50.0%
TGCACATGCTAGGAAGCGAA+TGG - chr1_1:29824534-29824553 Msa0017840:intron 50.0%
GCACATGCTAGGAAGCGAAT+GGG - chr1_1:29824535-29824554 Msa0017840:intron 50.0%
TGCTAGGAAGCGAATGGGAA+AGG - chr1_1:29824540-29824559 Msa0017840:intron 50.0%
GCTCTGCAGAGAGACCTTTA+TGG - chr1_1:29824562-29824581 Msa0017840:intron 50.0%
! GAGCGTTTTCTACTGGAGCA+TGG - chr1_1:29824650-29824669 Msa0017840:intron 50.0%
TCTGGTGTGGTTGCAACTCT+TGG - chr1_1:29824703-29824722 Msa0017840:intron 50.0%
CTGGTGTGGTTGCAACTCTT+GGG - chr1_1:29824704-29824723 Msa0017840:intron 50.0%
TCAGTACACAGGAAAGGTCG+GGG - chr1_1:29824780-29824799 Msa0017840:CDS 50.0%
TTGCAGGCATCCTTCTCACT+GGG - chr1_1:29825383-29825402 Msa0017840:intron 50.0%
CAAACCTTACCCCAGTGAGA+AGG + chr1_1:29825396-29825415 None:intergenic 50.0%
CTTCCTCAGCTGTTCGATTG+TGG - chr1_1:29825507-29825526 Msa0017840:CDS 50.0%
ATCCCACAATCGAACAGCTG+AGG + chr1_1:29825513-29825532 None:intergenic 50.0%
TCAGCTGTTCGATTGTGGGA+TGG - chr1_1:29825512-29825531 Msa0017840:CDS 50.0%
CTCCAACCCAGTCACCATTT+AGG + chr1_1:29825590-29825609 None:intergenic 50.0%
CATGGAGAGAACCCATATGG+TGG - chr1_1:29825771-29825790 Msa0017840:intron 50.0%
!! CGGAGGGAGTATTAAGCATC+TGG - chr1_1:29826167-29826186 Msa0017840:intron 50.0%
GCAAGCTCACAACTCACAAG+GGG + chr1_1:29826568-29826587 None:intergenic 50.0%
GTGCAAGCTCACAACTCACA+AGG + chr1_1:29826570-29826589 None:intergenic 50.0%
CTTGCACTAGAGTAGTGCAG+TGG - chr1_1:29826583-29826602 Msa0017840:intron 50.0%
CGCCATTATCCAATAGGGAC+TGG + chr1_1:29826993-29827012 None:intergenic 50.0%
GAGGACTTCAAGACTGCTTG+GGG - chr1_1:29827042-29827061 Msa0017840:CDS 50.0%
! GGAAGCATGGTTCATCACCA+AGG + chr1_1:29827449-29827468 None:intergenic 50.0%
AAGCTAAAGCACACCGAGAG+GGG - chr1_1:29827716-29827735 Msa0017840:intron 50.0%
CAGGTTAGAAGCCCAGTTCT+TGG - chr1_1:29828062-29828081 Msa0017840:intron 50.0%
TGTCGTGAGGGAAATGCATG+TGG + chr1_1:29828197-29828216 None:intergenic 50.0%
TGTCGAGGAGTTTGTCGTGA+GGG + chr1_1:29828209-29828228 None:intergenic 50.0%
TTGTCGAGGAGTTTGTCGTG+AGG + chr1_1:29828210-29828229 None:intergenic 50.0%
GCAGCTTCTTGTAGTTGTCG+AGG + chr1_1:29828224-29828243 None:intergenic 50.0%
! GTCGGTAATGGCTTCAACAG+AGG + chr1_1:29828306-29828325 None:intergenic 50.0%
CCTATGAAGCTGGTCGGTAA+TGG + chr1_1:29828318-29828337 None:intergenic 50.0%
CCATTACCGACCAGCTTCAT+AGG - chr1_1:29828315-29828334 Msa0017840:CDS 50.0%
GTAATTGTGCGGTGAACGGT+TGG + chr1_1:29829118-29829137 None:intergenic 50.0%
!!! GAGCTGGCTTTTCAAGATGG+GGG - chr1_1:29829452-29829471 Msa0017840:intron 50.0%
ACGAACGAGTATACAACGGG+AGG - chr1_1:29829476-29829495 Msa0017840:intron 50.0%
GCAGACGCTGGTAGAATGTT+GGG + chr1_1:29829537-29829556 None:intergenic 50.0%
TGCAGACGCTGGTAGAATGT+TGG + chr1_1:29829538-29829557 None:intergenic 50.0%
GCACCATATGTCCGAAGACA+AGG - chr1_1:29829555-29829574 Msa0017840:intron 50.0%
CGTGATTGCCTGATAGCTCA+CGG - chr1_1:29829673-29829692 Msa0017840:intron 50.0%
AGTACGGACCTCGAATCTTC+CGG + chr1_1:29829813-29829832 None:intergenic 50.0%
GCTGGCCACAACAATGTCAT+CGG + chr1_1:29829854-29829873 None:intergenic 50.0%
GTTGTGGCCAGCATTCCATA+TGG - chr1_1:29829862-29829881 Msa0017840:CDS 50.0%
TCTCAGGAGCTGTTCAGCAT+GGG - chr1_1:29829898-29829917 Msa0017840:CDS 50.0%
!! TAGGGAAAGCACTAGAGAGG+TGG + chr1_1:29829977-29829996 None:intergenic 50.0%
!! GTCTAGGGAAAGCACTAGAG+AGG + chr1_1:29829980-29829999 None:intergenic 50.0%
TATCGTCGCCGAGTTCGTTG+AGG + chr1_1:29822451-29822470 None:intergenic 55.0%
CAACGAACTCGGCGACGATA+TGG - chr1_1:29822451-29822470 Msa0017840:three_prime_UTR 55.0%
CGGTGATCTCACTGTTACGC+CGG - chr1_1:29822595-29822614 Msa0017840:exon 55.0%
GGTGATCTCACTGTTACGCC+GGG - chr1_1:29822596-29822615 Msa0017840:exon 55.0%
GTGATCTCACTGTTACGCCG+GGG - chr1_1:29822597-29822616 Msa0017840:exon 55.0%
CGAGACATGCTAGGTTGCAG+AGG - chr1_1:29822747-29822766 Msa0017840:CDS 55.0%
CCTTCTCAGCACCCTTGATC+AGG + chr1_1:29823515-29823534 None:intergenic 55.0%
!! CCTGATCAAGGGTGCTGAGA+AGG - chr1_1:29823512-29823531 Msa0017840:intron 55.0%
ATTGGTGGAAGGTTCCACGG+AGG - chr1_1:29824192-29824211 Msa0017840:intron 55.0%
TTGGTGGAAGGTTCCACGGA+GGG - chr1_1:29824193-29824212 Msa0017840:intron 55.0%
! GGCAAGGTACCTGGCTTACA+TGG - chr1_1:29824432-29824451 Msa0017840:CDS 55.0%
GTTGCAGGCATCCTTCTCAC+TGG - chr1_1:29825382-29825401 Msa0017840:intron 55.0%
TGCAGGCATCCTTCTCACTG+GGG - chr1_1:29825384-29825403 Msa0017840:intron 55.0%
GCATCCTTCTCACTGGGGTA+AGG - chr1_1:29825389-29825408 Msa0017840:intron 55.0%
AACCATGCTTCCTTGCAGCG+CGG - chr1_1:29827457-29827476 Msa0017840:intron 55.0%
TCTGAACATACCGCGCTGCA+AGG + chr1_1:29827470-29827489 None:intergenic 55.0%
!! ATCGGGCTGTGTGCTGATTC+AGG - chr1_1:29827677-29827696 Msa0017840:intron 55.0%
!! TCGGGCTGTGTGCTGATTCA+GGG - chr1_1:29827678-29827697 Msa0017840:intron 55.0%
!! GCTGTGTGCTGATTCAGGGA+TGG - chr1_1:29827682-29827701 Msa0017840:intron 55.0%
!! GGAAAGGGCATTGCCCTTGT+TGG - chr1_1:29828248-29828267 Msa0017840:CDS 55.0%
CGAGTATACAACGGGAGGAC+TGG - chr1_1:29829481-29829500 Msa0017840:intron 55.0%
AATCGCTTCCTGTCAGCGAC+AGG + chr1_1:29829625-29829644 None:intergenic 55.0%
GTCGCTGACAGGAAGCGATT+TGG - chr1_1:29829625-29829644 Msa0017840:intron 55.0%
! GCTGACAGGAAGCGATTTGG+AGG - chr1_1:29829628-29829647 Msa0017840:intron 55.0%
CTGATGCACCGTGAGCTATC+AGG + chr1_1:29829684-29829703 None:intergenic 55.0%
GTGATCTTGCGACCGGTATC+TGG - chr1_1:29829784-29829803 Msa0017840:CDS 55.0%
ATCTTGCGACCGGTATCTGG+TGG - chr1_1:29829787-29829806 Msa0017840:CDS 55.0%
ATCTTCCGGCCACCAGATAC+CGG + chr1_1:29829799-29829818 None:intergenic 55.0%
GTCTCAGGAGCTGTTCAGCA+TGG - chr1_1:29829897-29829916 Msa0017840:CDS 55.0%
! TGAGTTGGCTGGTGAGCTGC+TGG - chr1_1:29824500-29824519 Msa0017840:intron 60.0%
GCGCGCACTTTGCACATGCT+AGG - chr1_1:29824524-29824543 Msa0017840:intron 60.0%
TACCGCGCTGCAAGGAAGCA+TGG + chr1_1:29827462-29827481 None:intergenic 60.0%
! CAACGGGAGGACTGGTGAGA+TGG - chr1_1:29829489-29829508 Msa0017840:intron 60.0%
CGGACATATGGTGCAGACGC+TGG + chr1_1:29829549-29829568 None:intergenic 60.0%
TCCTGTCAGCGACAGGCTGT+CGG + chr1_1:29829618-29829637 None:intergenic 60.0%
TCTGGTGGCCGGAAGATTCG+AGG - chr1_1:29829802-29829821 Msa0017840:CDS 60.0%
GTCGGGTCAGCGGGTGAACT+GGG + chr1_1:29829600-29829619 None:intergenic 65.0%
TGTCGGGTCAGCGGGTGAAC+TGG + chr1_1:29829601-29829620 None:intergenic 65.0%
CCTGTCAGCGACAGGCTGTC+GGG + chr1_1:29829617-29829636 None:intergenic 65.0%
TGCGACCGGTATCTGGTGGC+CGG - chr1_1:29829791-29829810 Msa0017840:CDS 65.0%
CGACAGGCTGTCGGGTCAGC+GGG + chr1_1:29829609-29829628 None:intergenic 70.0%
GCGACAGGCTGTCGGGTCAG+CGG + chr1_1:29829610-29829629 None:intergenic 70.0%
CCCGACAGCCTGTCGCTGAC+AGG - chr1_1:29829614-29829633 Msa0017840:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 29822356 29830208 29822356 ID=Msa0017840;Name=Msa0017840
chr1_1 mRNA 29822356 29830208 29822356 ID=Msa0017840-mRNA-1;Parent=Msa0017840;Name=Msa0017840-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.3|0.27|1|1|1|11|254|1007
chr1_1 exon 29822356 29823111 29822356 ID=Msa0017840-mRNA-1:exon:9958;Parent=Msa0017840-mRNA-1
chr1_1 exon 29824228 29824499 29824228 ID=Msa0017840-mRNA-1:exon:9957;Parent=Msa0017840-mRNA-1
chr1_1 exon 29824756 29824916 29824756 ID=Msa0017840-mRNA-1:exon:9956;Parent=Msa0017840-mRNA-1
chr1_1 exon 29824975 29825089 29824975 ID=Msa0017840-mRNA-1:exon:9955;Parent=Msa0017840-mRNA-1
chr1_1 exon 29825147 29825353 29825147 ID=Msa0017840-mRNA-1:exon:9954;Parent=Msa0017840-mRNA-1
chr1_1 exon 29825463 29825684 29825463 ID=Msa0017840-mRNA-1:exon:9953;Parent=Msa0017840-mRNA-1
chr1_1 exon 29826884 29827175 29826884 ID=Msa0017840-mRNA-1:exon:9952;Parent=Msa0017840-mRNA-1
chr1_1 exon 29827749 29828018 29827749 ID=Msa0017840-mRNA-1:exon:9951;Parent=Msa0017840-mRNA-1
chr1_1 exon 29828169 29828482 29828169 ID=Msa0017840-mRNA-1:exon:9950;Parent=Msa0017840-mRNA-1
chr1_1 exon 29829031 29829243 29829031 ID=Msa0017840-mRNA-1:exon:9949;Parent=Msa0017840-mRNA-1
chr1_1 exon 29829753 29830208 29829753 ID=Msa0017840-mRNA-1:exon:9948;Parent=Msa0017840-mRNA-1
chr1_1 CDS 29829753 29830208 29829753 ID=Msa0017840-mRNA-1:cds;Parent=Msa0017840-mRNA-1
chr1_1 CDS 29829031 29829243 29829031 ID=Msa0017840-mRNA-1:cds;Parent=Msa0017840-mRNA-1
chr1_1 CDS 29828169 29828482 29828169 ID=Msa0017840-mRNA-1:cds;Parent=Msa0017840-mRNA-1
chr1_1 CDS 29827749 29828018 29827749 ID=Msa0017840-mRNA-1:cds;Parent=Msa0017840-mRNA-1
chr1_1 CDS 29826884 29827175 29826884 ID=Msa0017840-mRNA-1:cds;Parent=Msa0017840-mRNA-1
chr1_1 CDS 29825463 29825684 29825463 ID=Msa0017840-mRNA-1:cds;Parent=Msa0017840-mRNA-1
chr1_1 CDS 29825147 29825353 29825147 ID=Msa0017840-mRNA-1:cds;Parent=Msa0017840-mRNA-1
chr1_1 CDS 29824975 29825089 29824975 ID=Msa0017840-mRNA-1:cds;Parent=Msa0017840-mRNA-1
chr1_1 CDS 29824756 29824916 29824756 ID=Msa0017840-mRNA-1:cds;Parent=Msa0017840-mRNA-1
chr1_1 CDS 29824228 29824499 29824228 ID=Msa0017840-mRNA-1:cds;Parent=Msa0017840-mRNA-1
chr1_1 CDS 29822610 29823111 29822610 ID=Msa0017840-mRNA-1:cds;Parent=Msa0017840-mRNA-1
chr1_1 three_prime_UTR 29822356 29822609 29822356 ID=Msa0017840-mRNA-1:three_prime_utr;Parent=Msa0017840-mRNA-1
Gene Sequence

>Msa0017840

ATGGAGGATCACATAGGTTCAAGCAAAGACGCCAACATCTACACAGAAATGGACCTCGACATCAACGATGAAGATCCATCAAACGCTGAAATCCTCAACGAACTCGGCGACGATATGGTCAAATACTTTTGCAAAAAAGCTTGCGTCATGTTCTTCGGTCAATACGGTTTAACCAGTCACCAAATCAACTCCTATAATCAATTCATCACTTCTGGTCTTCAATCCGCTTTTGATTCCTTCGGTGATCTCACTGTTACGCCGGGGTTTGATCCTTCTAAGAAAGATGTCGATGAACGTTACCAATATGCCATGGTTAAGTTTGGGAATGTAACACTTGATCGACCGAAGTTTTGGTGTGGTGAAGGGAATGCTCAAGAGTTGAAGATGCTTCCGAGACATGCTAGGTTGCAGAGGATGACTTATGCTTCCAAAATGAAAGTTGATGTTCAACTTCAGGTATATATTCCGAAGAAGGTTCGGAGTGATAAGTTTAAGACTGGGAAAGAAGAGTATATTGATAGAGAGATCAAGTTGAATGAGACAAGGGAAATAACTATTGGTAGACTGCCTGTTATGGTCAAGTCTGATCTTTGCTGGATGAGTGAAGCTGAAAAAGGTTACTTTGAATTTGACCATGGAGGCTACTTCCTGATCAAGGGTGCTGAGAAGATTTTTATTGCACAAGAGCAAATATTTCTGAAGAGGCTCTGGGTTTCAAATATTCCGTATTGGGCTGTTGCTTTCAAGTCACAGATGAAGAGAAATAGGATGGTTGTTAAATTGGTGGAAGGTTCCACGGAGGGAATTACAAATTATGGACAGGCAGATGGAAGAATTGAAAACATTCTCTTTGCATCAATCCGTGAGGCAGACGATAAATGTGAAGCGTTTCGTAGGGGAAAGAACGCTCTTCTTTTCTTAGAGGAACGTGTAAAAGGCGTGCAGTTTCCACCTGCAGAATCTATTGACGAGTGCTTTAACATGAAGCGAATGGGAAAGGCTCTGCAGAGAGACCTTTATGGAGATCGAGATGTTCGTCAAATTGAGCACTATCTTGACGCTTCCATCATTACAAATGGTCTCCAAAGAGCGTTTTCTACTGGAGCATGGACACATCCTTTCAAAAGGATGGAAAGGATATCTGGTGTGGTTGCAACTCTTGGGCGAACCAATCCATTACAAACCATGGCTGAATTAAGAAGAACAAGGCAACAAGTTCAGTACACAGGAAAGGTCGGGGATGCTAGATACCCGCATCCTTCTCACTGGGGTAAGGTTTGTTTCCTTTCTACCCCAGATGGTGAAAATTGTGGACTGATAAAAAATTTGGCTGTCACAGGAGTAGTAAGTACCAATGTAACTGAATCCGTACTTCCTCAGCTGTTCGATTGTGGGATGGAAGAACTTATTGATGATACTACAACTGTTCTGGGGAAAAAAGACAAGGTCTTCCTAAATGGTGACTGGGTTGGAGTTTGTTCAGATTCCACGTCATTTGTAGCAGAGCTACGAAATAGAAGACGGAGAAATGAGTTGCCTCATCAGTATCAACAAGAAGTGCGTATATTATCTGATGCAGGAAGGATTCTCCATCCACTCTTGGTTGTTAGTAATCTGCCCAAGATTAAAGGATCTAAGTCGGAGCATAAATCTTTCCAGTCCCTATTGGATAATGGCGTTATTGAGCTGATTGGTCCTGAAGAAGAAGAGGACTTCAAGACTGCTTGGGGTGTTCAGTATTTGTTTGGCAAAGAGGGGAAATCTTCTAAGCATTCTTCTCAAGCTATTGGCTTTGCTTCGACAAACCCAAATATAAGAGTCGATGCTTTATCTCACCAACTGTTTTATCCACAAAGACCATTCTTTCAGACAATGACATCTGATTGTCTCGGAAAACCTGGATATCTAGGTCAGATTAAAGTTGTTCCGAAGTCTGAATTCTATAATGGGCAGAATGCAATTGTGGCTGTCAATCGCGGTATGTTCAGATCTGAGCATATAAGGAGTTACAAAGCTGAAATTGAGAATAAGGAATCTTCAGAAAAGAGAAAGAAGCCTGAAGACATTGTTAATTTTGGAAAGTTACAGAGAGCAAATTTGCAGAGTGGTGACATTATCATCGGGCTGTGTGCTGATTCAGGGATGGACCATAGTATAAAGCTAAAGCACACCGAGAGGGGTTATGTTCAAAAGGTTGTGCTGTCTTCGAATGATGAGGGGAAGAATTTTGCTGTTGTTTCGTTAAGACAGGTTAGAAGCCCAGTTCTTGGAGATAAGTTCTCCAGTATGCATGGACAGAAAGGTGTTTTGGGTTTTCTGGAATCTCAGGAAAATTTCCCCTTCACAAAACAAGGCATAGTTCCTGATATTATTATAAATCCACATGCATTTCCCTCACGACAAACTCCTCGACAACTACAAGAAGCTGCTTTGGGAAAGGGCATTGCCCTTGTTGGTTCACTGAGAAATGCTACTCCTTTCTCCACTTCCTCTGTTGAAGCCATTACCGACCAGCTTCATAGAGCTGGCTTTTCAAGATGGGGGAACGAACGAGTATACAACGGGAGGACTGGTGAGATGGTCCGATCACTAATATTTATGGGCCCAACATTCTACCAGCGTCTGCACCATATGTCCGAAGACAAGGTCAAATTCAGGAACACTGGCCCAGTTCACCCGCTGACCCGACAGCCTGTCGCTGACAGGAAGCGATTTGGAGGTATTAAGTTTGGTGAAATGGAGCGTGATTGCCTGATAGCTCACGGTGCATCAGCTAATTTGTATGAATGGCTCTTCACCCTGAGTGATTCGTCTCAGATACACATTTGTAGTATATGCAAGAATGTTGCAAATGTGATCTTGCGACCGGTATCTGGTGGCCGGAAGATTCGAGGTCCGTACTGCCGTTTCTGTGAATCAGCCGATGACATTGTTGTGGCCAGCATTCCATATGGAGCAAAGTTATTGTCTCAGGAGCTGTTCAGCATGGGCATTAATCTCAAATTTGAAACTGAGCTTTGCTAG
Protein sequence

>Msa0017840

MEDHIGSSKDANIYTEMDLDINDEDPSNAEILNELGDDMVKYFCKKACVMFFGQYGLTSHQINSYNQFITSGLQSAFDSFGDLTVTPGFDPSKKDVDERYQYAMVKFGNVTLDRPKFWCGEGNAQELKMLPRHARLQRMTYASKMKVDVQLQVYIPKKVRSDKFKTGKEEYIDREIKLNETREITIGRLPVMVKSDLCWMSEAEKGYFEFDHGGYFLIKGAEKIFIAQEQIFLKRLWVSNIPYWAVAFKSQMKRNRMVVKLVEGSTEGITNYGQADGRIENILFASIREADDKCEAFRRGKNALLFLEERVKGVQFPPAESIDECFNMKRMGKALQRDLYGDRDVRQIEHYLDASIITNGLQRAFSTGAWTHPFKRMERISGVVATLGRTNPLQTMAELRRTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLIKNLAVTGVVSTNVTESVLPQLFDCGMEELIDDTTTVLGKKDKVFLNGDWVGVCSDSTSFVAELRNRRRRNELPHQYQQEVRILSDAGRILHPLLVVSNLPKIKGSKSEHKSFQSLLDNGVIELIGPEEEEDFKTAWGVQYLFGKEGKSSKHSSQAIGFASTNPNIRVDALSHQLFYPQRPFFQTMTSDCLGKPGYLGQIKVVPKSEFYNGQNAIVAVNRGMFRSEHIRSYKAEIENKESSEKRKKPEDIVNFGKLQRANLQSGDIIIGLCADSGMDHSIKLKHTERGYVQKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIIINPHAFPSRQTPRQLQEAALGKGIALVGSLRNATPFSTSSVEAITDQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLYEWLFTLSDSSQIHICSICKNVANVILRPVSGGRKIRGPYCRFCESADDIVVASIPYGAKLLSQELFSMGINLKFETELC*