AlfalfaGEDB | Msa1029310

M. sativa cultivar zhongmu-4 / Msa1029310

KEGG: K10750
GO: GO:0000724 GO:0000725 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006323 GO:0006325 GO:0006333 GO:0006334 GO:0006338 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008283 GO:0009555 GO:0009888 GO:0009934 GO:0009987 GO:0010026 GO:0016043 GO:0022603 GO:0022607 GO:0030154 GO:0031497 GO:0031507 GO:0032501 GO:0032502 GO:0032991 GO:0033186 GO:0033554 GO:0034622 GO:0034641 GO:0034728 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0045787 GO:0046483 GO:0048229 GO:0048366 GO:0048367 GO:0048509 GO:0048518 GO:0048522 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051276 GO:0051716 GO:0051726 GO:0065003 GO:0065004 GO:0065007 GO:0070828 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090558 GO:0099402 GO:1901360
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1029310	RHN47135.1	97.656	256	6	0	5	260	592	847	2.32e-175	514

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1029310	sp\|Q9SXY0\|FAS1_ARATH	50.413	242	103	6	5	242	574	802	1.83e-67	226

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1029310	A0A396H7I2	97.656	256	6	0	5	260	592	847	1.11e-175	514

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003890	Msa1029310	0.811912	5.521409e-51	-8.615850e-47
Msa0017510	Msa1029310	0.806310	8.753906e-50	-8.615850e-47
Msa0017840	Msa1029310	0.808363	3.213066e-50	-8.615850e-47
Msa0026910	Msa1029310	0.800374	1.485029e-48	-8.615850e-47
Msa0031340	Msa1029310	0.826131	3.209987e-54	-8.615850e-47
Msa0032430	Msa1029310	0.804258	2.354591e-49	-8.615850e-47
Msa0044000	Msa1029310	0.806751	7.066536e-50	-8.615850e-47
Msa0045790	Msa1029310	0.803909	2.784054e-49	-8.615850e-47
Msa0079380	Msa1029310	0.809745	1.625569e-50	-8.615850e-47
Msa0084380	Msa1029310	0.861640	8.901050e-64	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1029310	MtrunA17_Chr7g0249641	97.656	256	6	0	5	260	592	847	2.13e-179	514

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1029310	AT1G65470.1	50.413	242	103	6	5	242	574	802	1.86e-68	226
Msa1029310	AT1G65470.2	50.413	242	103	6	5	242	566	794	2.05e-68	226

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Find 67 sgRNAs with CRISPR-Local

Find 294 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTGCTTACCACCTGG+AGG	0.699844	7_1:-62748548	Msa1029310:CDS
AAAGAAGTATTGGCTAAGCT+TGG	0.496391	7_1:-62748721	Msa1029310:CDS
AAAGGATGACATAGAGACTG+AGG	0.647162	7_1:-62749836	Msa1029310:CDS
AAATCAGAACTTACAATTAT+AGG	0.292508	7_1:+62749490	None:intergenic
AACAGATGTTGGCCTTGAGG+AGG	0.654012	7_1:-62749878	Msa1029310:CDS
AAGCACATCTGCTCCTGCTT+AGG	0.464936	7_1:+62749673	None:intergenic
AATTCTATATAAGAACCACC+AGG	0.708687	7_1:+62749625	None:intergenic
ACAAAATTTGCTATGATCAC+AGG	0.425291	7_1:+62749742	None:intergenic
ACCTTTGCCAGTAGAGGGAG+AGG	0.488734	7_1:+62749561	None:intergenic
ACTATCCAGAATTGTTCTCA+GGG	0.622416	7_1:-62749324	Msa1029310:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGTACAGAATAGATACCAA+TGG	+	chr7_1:62748344-62748363	None:intergenic	30.0%
TTATTGGATCGCAGTATTAA+CGG	-	chr7_1:62748611-62748630	Msa1029310:intron	30.0%
AATTCTATATAAGAACCACC+AGG	+	chr7_1:62748689-62748708	None:intergenic	30.0%
TGTCAAGGGACTAAATATAA+CGG	-	chr7_1:62749205-62749224	Msa1029310:intron	30.0%
CATAGCTGTAAAAGGTTAAA+GGG	+	chr7_1:62749261-62749280	None:intergenic	30.0%
CCAAAAGATCTTATATCTGT+TGG	-	chr7_1:62749317-62749336	Msa1029310:CDS	30.0%
ACATCGTAAATTCAGCTTAT+TGG	+	chr7_1:62749551-62749570	None:intergenic	30.0%
TTACGATGTTATGTTTGTTC+AGG	-	chr7_1:62749562-62749581	Msa1029310:CDS	30.0%
GACAGCTAAATCAAAAAAAC+TGG	+	chr7_1:62749663-62749682	None:intergenic	30.0%
ACTCAGAAATTTCCTTACAT+TGG	+	chr7_1:62750040-62750059	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	62748272	62750061	62748272	ID=Msa1029310;Name=Msa1029310
chr7_1	mRNA	62748272	62750061	62748272	ID=Msa1029310-mRNA-1;Parent=Msa1029310;Name=Msa1029310-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|0.75\|0.6\|0.8\|1\|1\|5\|179\|260
chr7_1	exon	62748272	62748614	62748272	ID=Msa1029310-mRNA-1:exon:13482;Parent=Msa1029310-mRNA-1
chr7_1	exon	62748704	62748749	62748704	ID=Msa1029310-mRNA-1:exon:13481;Parent=Msa1029310-mRNA-1
chr7_1	exon	62749215	62749352	62749215	ID=Msa1029310-mRNA-1:exon:13480;Parent=Msa1029310-mRNA-1
chr7_1	exon	62749504	62749923	62749504	ID=Msa1029310-mRNA-1:exon:13479;Parent=Msa1029310-mRNA-1
chr7_1	exon	62750047	62750061	62750047	ID=Msa1029310-mRNA-1:exon:13478;Parent=Msa1029310-mRNA-1
chr7_1	CDS	62750047	62750061	62750047	ID=Msa1029310-mRNA-1:cds;Parent=Msa1029310-mRNA-1
chr7_1	CDS	62749504	62749923	62749504	ID=Msa1029310-mRNA-1:cds;Parent=Msa1029310-mRNA-1
chr7_1	CDS	62749215	62749352	62749215	ID=Msa1029310-mRNA-1:cds;Parent=Msa1029310-mRNA-1
chr7_1	CDS	62748704	62748749	62748704	ID=Msa1029310-mRNA-1:cds;Parent=Msa1029310-mRNA-1
chr7_1	CDS	62748451	62748614	62748451	ID=Msa1029310-mRNA-1:cds;Parent=Msa1029310-mRNA-1
chr7_1	three_prime_UTR	62748272	62748450	62748272	ID=Msa1029310-mRNA-1:three_prime_utr;Parent=Msa1029310-mRNA-1

Gene Sequence

>Msa1029310

ATGAAAAAAGCTGAGGGTGCACAATTGGACCGAATGGAAACAGATGTTGGCCTTGAGGAGGTTGATAGCTCATCTTGCTCAAAGGATGACATAGAGACTGAGGAATTTTGTGCTTTACTTCGACAGCAGAAATATCTAAACAATTTAACAGAGCACGCTCTTCGTAAAAATAACCCTGTGATCATAGCAAATTTTGTTTATGACAAGGAGTTTTCGTTATTGGATCGCAGTATTAACGGAACTCCTAAGCAGGAGCAGATGTGCTTGCAAGCCTTGAGAATGTACACAATTCCTGGTGGTTCTTATATAGAATTAGAATTATCCACTGATAAAATGCAAGAAGAAGACCAAGAAGCCTCTCCCTCTACTGGCAAAGGTGCTGCTACTCCACTGCCTGATCTGGCTGCCATACCAGACACAGATCTGCCTATAATTGTGACCACTATCCAGAATTGTTCTCAGGGTATAAATAAAGTGTTAGGGTCTTTGCAGCAGAAATTTCCTTCTGCATCAAAATCATCACTAAGGAATAAAGTGCGAGAAGTATCGGACTATGTCGATAACCGATGGCAGGTGAAGAAAGAAGTATTGGCTAAGCTTGGCTTGACAGTTAAACCTGAGAAGAGCAGTGGGGGGCCAAGAAGCATTGCTGCATTTTTCTCTAAAAGGTGCTTACCACCTGGAGGTGAAAGCGGGAAACCTGGTGAAACATCACCACAGCCATCTTCGAAGTCATATTCTGCCATCCATGATCCACAAGACAGCAGATCACATGAAATCTAG

Protein sequence

>Msa1029310

MKKAEGAQLDRMETDVGLEEVDSSSCSKDDIETEEFCALLRQQKYLNNLTEHALRKNNPVIIANFVYDKEFSLLDRSINGTPKQEQMCLQALRMYTIPGGSYIELELSTDKMQEEDQEASPSTGKGAATPLPDLAAIPDTDLPIIVTTIQNCSQGINKVLGSLQQKFPSASKSSLRNKVREVSDYVDNRWQVKKEVLAKLGLTVKPEKSSGGPRSIAAFFSKRCLPPGGESGKPGETSPQPSSKSYSAIHDPQDSRSHEI*