Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0027050 | sp|Q8GWS0|GRXC5_ARATH | 65.833 | 120 | 28 | 1 | 81 | 200 | 65 | 171 | 9.21e-56 | 177 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014960 | Msa0027050 | 0.811643 | 6.316990e-51 | -8.615850e-47 |
| Msa0027050 | Msa0044250 | 0.816438 | 5.530192e-52 | -8.615850e-47 |
| Msa0027050 | Msa0140330 | 0.844660 | 6.588962e-59 | -8.615850e-47 |
| Msa0027050 | Msa0193000 | 0.824410 | 8.193601e-54 | -8.615850e-47 |
| Msa0027050 | Msa0223390 | 0.806558 | 7.758965e-50 | -8.615850e-47 |
| Msa0027050 | Msa0235180 | 0.813843 | 2.084193e-51 | -8.615850e-47 |
| Msa0027050 | Msa0302660 | 0.828282 | 9.801937e-55 | -8.615850e-47 |
| Msa0027050 | Msa0313800 | 0.823849 | 1.110122e-53 | -8.615850e-47 |
| Msa0027050 | Msa0368430 | 0.845095 | 5.029416e-59 | -8.615850e-47 |
| Msa0027050 | Msa0379090 | 0.812828 | 3.483824e-51 | -8.615850e-47 |
| Msa0027050 | Msa0396970 | 0.809886 | 1.516097e-50 | -8.615850e-47 |
| Msa0027050 | Msa0397000 | 0.803059 | 4.176274e-49 | -8.615850e-47 |
| Msa0027050 | Msa0482960 | 0.814753 | 1.312261e-51 | -8.615850e-47 |
| Msa0027050 | Msa0492000 | 0.817717 | 2.852735e-52 | -8.615850e-47 |
| Msa0027050 | Msa0720380 | 0.824128 | 9.545027e-54 | -8.615850e-47 |
| Msa0027050 | Msa0750940 | 0.816582 | 5.135554e-52 | -8.615850e-47 |
| Msa0027050 | Msa0752290 | 0.800872 | 1.175498e-48 | -8.615850e-47 |
| Msa0027050 | Msa0760950 | 0.805169 | 1.520149e-49 | -8.615850e-47 |
| Msa0027050 | Msa0794130 | 0.803084 | 4.126981e-49 | -8.615850e-47 |
| Msa0027050 | Msa0803220 | 0.827818 | 1.267723e-54 | -8.615850e-47 |
| Msa0027050 | Msa0832270 | 0.853830 | 1.843553e-61 | -8.615850e-47 |
| Msa0027050 | Msa0869090 | 0.834709 | 2.562392e-56 | -8.615850e-47 |
| Msa0027050 | Msa0932000 | 0.801960 | 7.034468e-49 | -8.615850e-47 |
| Msa0027050 | Msa1013510 | 0.803612 | 3.208679e-49 | -8.615850e-47 |
| Msa0027050 | Msa1144420 | 0.811340 | 7.352192e-51 | -8.615850e-47 |
| Msa0027050 | Msa1208750 | 0.822859 | 1.890941e-53 | -8.615850e-47 |
| Msa0027050 | Msa1228950 | 0.807634 | 4.592194e-50 | -8.615850e-47 |
| Msa0027050 | Msa1234960 | 0.822910 | 1.839281e-53 | -8.615850e-47 |
| Msa0027050 | Msa1353040 | 0.809796 | 1.585399e-50 | -8.615850e-47 |
| Msa0027050 | Msa1356200 | 0.834276 | 3.292070e-56 | -8.615850e-47 |
| Msa0027050 | Msa1356680 | 0.805376 | 1.375367e-49 | -8.615850e-47 |
| Msa0027050 | Msa1372680 | 0.844640 | 6.671818e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0027050 | MtrunA17_Chr1g0182971 | 87.685 | 203 | 9 | 4 | 1 | 203 | 1 | 187 | 2.63e-104 | 298 |
| Msa0027050 | MtrunA17_Chr3g0117411 | 44.037 | 109 | 47 | 2 | 90 | 198 | 22 | 116 | 1.42e-22 | 88.2 |
| Msa0027050 | MtrunA17_Chr7g0228311 | 45.872 | 109 | 45 | 2 | 90 | 198 | 7 | 101 | 4.41e-22 | 86.7 |
| Msa0027050 | MtrunA17_Chr3g0117391 | 41.593 | 113 | 50 | 3 | 90 | 200 | 25 | 123 | 1.72e-21 | 85.5 |
| Msa0027050 | MtrunA17_Chr2g0299021 | 35.897 | 117 | 61 | 2 | 77 | 193 | 74 | 176 | 1.85e-19 | 82.0 |
| Msa0027050 | MtrunA17_Chr5g0404751 | 37.143 | 105 | 52 | 2 | 89 | 193 | 36 | 126 | 5.96e-17 | 73.9 |
| Msa0027050 | MtrunA17_Chr4g0066791 | 34.513 | 113 | 59 | 3 | 87 | 198 | 2 | 100 | 8.69e-13 | 62.0 |
| Msa0027050 | MtrunA17_Chr4g0066801 | 34.513 | 113 | 59 | 3 | 87 | 198 | 2 | 100 | 8.69e-13 | 62.0 |
| Msa0027050 | MtrunA17_Chr4g0066811 | 34.513 | 113 | 59 | 3 | 87 | 198 | 2 | 100 | 8.69e-13 | 62.0 |
| Msa0027050 | MtrunA17_Chr7g0224091 | 36.283 | 113 | 57 | 3 | 87 | 198 | 23 | 121 | 1.86e-12 | 61.6 |
| Msa0027050 | MtrunA17_Chr7g0268711 | 31.776 | 107 | 59 | 2 | 87 | 193 | 2 | 94 | 6.30e-12 | 59.7 |
| Msa0027050 | MtrunA17_Chr1g0195951 | 33.036 | 112 | 61 | 2 | 87 | 198 | 2 | 99 | 8.00e-12 | 59.7 |
| Msa0027050 | MtrunA17_Chr1g0195971 | 30.357 | 112 | 64 | 2 | 87 | 198 | 2 | 99 | 1.69e-11 | 58.5 |
| Msa0027050 | MtrunA17_Chr7g0268761 | 36.275 | 102 | 51 | 2 | 97 | 198 | 12 | 99 | 3.55e-11 | 57.8 |
| Msa0027050 | MtrunA17_Chr2g0286251 | 32.143 | 112 | 62 | 2 | 87 | 198 | 2 | 99 | 4.40e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0027050 | AT4G28730.1 | 65.833 | 120 | 28 | 1 | 81 | 200 | 65 | 171 | 9.36e-57 | 177 |
| Msa0027050 | AT2G20270.1 | 62.931 | 116 | 30 | 1 | 85 | 200 | 74 | 176 | 1.71e-48 | 156 |
| Msa0027050 | AT2G20270.2 | 51.049 | 143 | 30 | 2 | 85 | 200 | 74 | 203 | 3.99e-42 | 141 |
| Msa0027050 | AT4G28730.2 | 75.000 | 76 | 19 | 0 | 81 | 156 | 65 | 140 | 7.68e-42 | 138 |
| Msa0027050 | AT5G63030.1 | 44.037 | 109 | 47 | 2 | 90 | 198 | 23 | 117 | 1.02e-21 | 86.7 |
| Msa0027050 | AT5G20500.1 | 37.879 | 132 | 61 | 4 | 70 | 201 | 21 | 131 | 1.27e-20 | 84.0 |
| Msa0027050 | AT5G40370.1 | 44.037 | 109 | 47 | 2 | 90 | 198 | 7 | 101 | 1.36e-20 | 83.2 |
| Msa0027050 | AT5G40370.2 | 43.434 | 99 | 42 | 2 | 100 | 198 | 42 | 126 | 1.13e-16 | 73.6 |
| Msa0027050 | AT1G77370.1 | 34.906 | 106 | 55 | 2 | 89 | 194 | 37 | 128 | 6.45e-16 | 71.6 |
| Msa0027050 | AT2G47870.1 | 31.481 | 108 | 59 | 3 | 87 | 193 | 2 | 95 | 5.60e-15 | 68.2 |
| Msa0027050 | AT1G77370.2 | 29.008 | 131 | 55 | 2 | 89 | 194 | 37 | 154 | 3.63e-13 | 64.7 |
| Msa0027050 | AT3G62950.1 | 30.088 | 113 | 64 | 3 | 87 | 198 | 2 | 100 | 1.25e-12 | 62.0 |
| Msa0027050 | AT5G18600.1 | 33.036 | 112 | 61 | 2 | 87 | 198 | 2 | 99 | 5.55e-12 | 60.5 |
Find 80 sgRNAs with CRISPR-Local
Find 260 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCAAACCACAGATTTATT+AGG | 0.183201 | 1_1:+51243998 | None:intergenic |
| TCCACAATTGCAGAAGTTAT+TGG | 0.236945 | 1_1:-51246716 | Msa0027050:CDS |
| TCTTCTTCTTCTCCTTCTTT+TGG | 0.236971 | 1_1:-51246993 | Msa0027050:CDS |
| TCGTGTAATGATTCTTAAAT+TGG | 0.245100 | 1_1:-51243930 | Msa0027050:three_prime_UTR |
| ACTGTCCCAAATGTCTTTAT+TGG | 0.269990 | 1_1:-51246673 | Msa0027050:intron |
| TGCTTACCAATAAAGACATT+TGG | 0.309384 | 1_1:+51246667 | None:intergenic |
| CCTGCAATGAAGAAAACTTT+AGG | 0.335075 | 1_1:+51244786 | None:intergenic |
| CTCAAACCACAGATTTATTA+GGG | 0.347149 | 1_1:+51243999 | None:intergenic |
| ATGGGTGAAGGAGTGGAAAT+GGG | 0.349172 | 1_1:+51247104 | None:intergenic |
| GATGGGTGAAGGAGTGGAAA+TGG | 0.372694 | 1_1:+51247103 | None:intergenic |
| GCTTACCAATAAAGACATTT+GGG | 0.379345 | 1_1:+51246668 | None:intergenic |
| TCAACCATTGGTCATCGAAT+TGG | 0.385321 | 1_1:-51246853 | Msa0027050:CDS |
| AGCAGAAGACTTTAGGTGAT+TGG | 0.386344 | 1_1:-51247297 | Msa0027050:five_prime_UTR |
| GGTCATCGAATTGGACGAAC+TGG | 0.388172 | 1_1:-51246844 | Msa0027050:CDS |
| AAATTGGTCATTTAAATGCC+TGG | 0.390626 | 1_1:-51243914 | Msa0027050:three_prime_UTR |
| CCTAATAAATCTGTGGTTTG+AGG | 0.394613 | 1_1:-51243998 | Msa0027050:three_prime_UTR |
| GTTCATCAATTTCATTTGCC+TGG | 0.396422 | 1_1:+51243847 | None:intergenic |
| GATTTAGAATAAACAACAAC+AGG | 0.399918 | 1_1:+51246927 | None:intergenic |
| TCCAATAACTTCTGCAATTG+TGG | 0.404965 | 1_1:+51246715 | None:intergenic |
| AACCGGATCAGATTCCCTTT+AGG | 0.406920 | 1_1:+51244085 | None:intergenic |
| CAGAACAGGAAAGTGAATAA+TGG | 0.411370 | 1_1:-51247234 | Msa0027050:exon |
| GGTGTAGAAAGTGAAAATTT+TGG | 0.420415 | 1_1:+51247127 | None:intergenic |
| AGACATTTGGGACAGTGTAT+TGG | 0.422317 | 1_1:+51246680 | None:intergenic |
| CTAATAAATCTGTGGTTTGA+GGG | 0.423527 | 1_1:-51243997 | Msa0027050:three_prime_UTR |
| CTGCAATGAAGAAAACTTTA+GGG | 0.425228 | 1_1:+51244787 | None:intergenic |
| ATCTGTGGTTTGAGTGCTCC+AGG | 0.428536 | 1_1:-51243865 | Msa0027050:three_prime_UTR |
| CAACACATTGGTGGCTGTAC+AGG | 0.429960 | 1_1:-51244759 | Msa0027050:intron |
| TATTCATTCATTCACAGAAC+AGG | 0.431362 | 1_1:-51247248 | Msa0027050:five_prime_UTR |
| CAATATTACTCTCATCCTAA+AGG | 0.442708 | 1_1:-51244100 | Msa0027050:three_prime_UTR |
| AATATTACTCTCATCCTAAA+GGG | 0.445240 | 1_1:-51244099 | Msa0027050:three_prime_UTR |
| TTGTTGTTTATTCTAAATCC+TGG | 0.449421 | 1_1:-51246923 | Msa0027050:CDS |
| GTGAATAATGGCTTCATCAA+TGG | 0.451455 | 1_1:-51247222 | Msa0027050:exon |
| GTATTAACTCAGTGCTTTCA+AGG | 0.458311 | 1_1:+51244042 | None:intergenic |
| TTCTTACAGTGTTAATTCCC+AGG | 0.459473 | 1_1:+51243896 | None:intergenic |
| CAGATACACTTAAGCTGTAC+AGG | 0.473714 | 1_1:-51244188 | Msa0027050:CDS |
| CTTCTGATAGCAGAGTTTCA+AGG | 0.477656 | 1_1:+51244157 | None:intergenic |
| TTCTGTGAATGAATGAATAA+TGG | 0.478945 | 1_1:+51247252 | None:intergenic |
| AATTGGTCATTTAAATGCCT+GGG | 0.489244 | 1_1:-51243913 | Msa0027050:three_prime_UTR |
| ATCCTAAAGGGAATCTGATC+CGG | 0.491393 | 1_1:-51244087 | Msa0027050:three_prime_UTR |
| TGATGCATTGGTGATGATGA+TGG | 0.500169 | 1_1:+51247085 | None:intergenic |
| GGAGAAGAAGAAGAGGGAGA+AGG | 0.503916 | 1_1:+51247002 | None:intergenic |
| AGACATGGCTCGAGGGAAAG+TGG | 0.505541 | 1_1:+51247049 | None:intergenic |
| TTCTGCAATTGTGGACCTTG+TGG | 0.506196 | 1_1:+51246724 | None:intergenic |
| AAAAGAAGGAGAAGAAGAAG+AGG | 0.512551 | 1_1:+51246995 | None:intergenic |
| CTCAGAGCAATAAGAGCACC+AGG | 0.519483 | 1_1:+51246905 | None:intergenic |
| AAGTTATTGGAAAGAATCAC+TGG | 0.522538 | 1_1:-51246703 | Msa0027050:CDS |
| TATATGCGACAAATTGCAAC+CGG | 0.524919 | 1_1:+51244068 | None:intergenic |
| TGGGTGAAGGAGTGGAAATG+GGG | 0.529038 | 1_1:+51247105 | None:intergenic |
| TCGAGACGAGAGCCAAAAGA+AGG | 0.547578 | 1_1:+51246981 | None:intergenic |
| ATTGCAGGTGGCCAACACAT+TGG | 0.560668 | 1_1:-51244771 | Msa0027050:CDS |
| TGCGCGGCGTGATGATGCAT+TGG | 0.565062 | 1_1:+51247073 | None:intergenic |
| GATGATGATGGGTGAAGGAG+TGG | 0.565535 | 1_1:+51247097 | None:intergenic |
| AATAATGGTCGAACGAAGGA+AGG | 0.570467 | 1_1:+51247267 | None:intergenic |
| GACATGGCTCGAGGGAAAGT+GGG | 0.576041 | 1_1:+51247050 | None:intergenic |
| GTAAGAACTAATTAGATCTG+TGG | 0.576378 | 1_1:-51243880 | Msa0027050:three_prime_UTR |
| GAAGAGGCTCATAAAACAGA+AGG | 0.576814 | 1_1:+51243778 | None:intergenic |
| GAAACTCGGTACTCAACCAT+TGG | 0.578067 | 1_1:-51246865 | Msa0027050:CDS |
| TATTAACTCAGTGCTTTCAA+GGG | 0.579305 | 1_1:+51244043 | None:intergenic |
| TCGTCCAATTCGATGACCAA+TGG | 0.580200 | 1_1:+51246849 | None:intergenic |
| ATTATGAGATATAAAAGAAG+AGG | 0.583284 | 1_1:+51243762 | None:intergenic |
| CTCGAGGGAAAGTGGGTGCG+CGG | 0.586414 | 1_1:+51247057 | None:intergenic |
| AAAGAAGGAGAAGAAGAAGA+GGG | 0.596305 | 1_1:+51246996 | None:intergenic |
| GGGTGAAGGAGTGGAAATGG+GGG | 0.597848 | 1_1:+51247106 | None:intergenic |
| ACACTTAAGCTGTACAGGAA+AGG | 0.605615 | 1_1:-51244183 | Msa0027050:CDS |
| AAATCCTTGTTCAAGAAACT+CGG | 0.607350 | 1_1:-51246879 | Msa0027050:CDS |
| GTCATCGAATTGGACGAACT+GGG | 0.610452 | 1_1:-51246843 | Msa0027050:intron |
| AGTACCGAGTTTCTTGAACA+AGG | 0.611087 | 1_1:+51246875 | None:intergenic |
| GCAGGTGGCCAACACATTGG+TGG | 0.613270 | 1_1:-51244768 | Msa0027050:CDS |
| AAGAAGAAGACATGGCTCGA+GGG | 0.614920 | 1_1:+51247042 | None:intergenic |
| GAAGAAGAAGACATGGCTCG+AGG | 0.618686 | 1_1:+51247041 | None:intergenic |
| TTTCTGTGTTTAGGTCCACA+AGG | 0.618825 | 1_1:-51246739 | Msa0027050:intron |
| ATTAGACCCTAATAAATCTG+TGG | 0.622082 | 1_1:-51244005 | Msa0027050:three_prime_UTR |
| CTGGTGCTCTTATTGCTCTG+AGG | 0.633125 | 1_1:-51246904 | Msa0027050:CDS |
| GATGCATTGGTGATGATGAT+GGG | 0.639376 | 1_1:+51247086 | None:intergenic |
| TTGGTGATGATGATGGGTGA+AGG | 0.644107 | 1_1:+51247092 | None:intergenic |
| AAGACTTTAGGTGATTGGTA+CGG | 0.645409 | 1_1:-51247292 | Msa0027050:five_prime_UTR |
| CTGTACAGCCACCAATGTGT+TGG | 0.647816 | 1_1:+51244760 | None:intergenic |
| AATGAATAATGGTCGAACGA+AGG | 0.652672 | 1_1:+51247263 | None:intergenic |
| GGATGAGAGTAATATTGACA+AGG | 0.673752 | 1_1:+51244106 | None:intergenic |
| ATTTAGAATAAACAACAACA+GGG | 0.680559 | 1_1:+51246928 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGAAAATTATACTATATAT+AGG | - | chr1_1:51244977-51244996 | Msa0027050:intron | 10.0% |
| !! | TGAAAATTATACTATATATA+GGG | - | chr1_1:51244978-51244997 | Msa0027050:intron | 10.0% |
| !!! | AATTTAAAACTTTCTTTTTT+TGG | - | chr1_1:51246019-51246038 | Msa0027050:intron | 10.0% |
| !! | TTGGATAAAAAAGTTTAATT+AGG | - | chr1_1:51244656-51244675 | Msa0027050:intron | 15.0% |
| !! | AATAAATTGAAAAAAGCTTA+AGG | - | chr1_1:51244776-51244795 | Msa0027050:CDS | 15.0% |
| !!! | ATTTAAAATTTAGGTTTTTG+TGG | + | chr1_1:51245333-51245352 | None:intergenic | 15.0% |
| !! | CAAATATAGTAATATTACAT+TGG | - | chr1_1:51245951-51245970 | Msa0027050:intron | 15.0% |
| !! | AAAAGATAAAATTAAATGCA+GGG | + | chr1_1:51246225-51246244 | None:intergenic | 15.0% |
| !!! | ATTTAGAATAAACAACAACA+GGG | + | chr1_1:51244129-51244148 | None:intergenic | 20.0% |
| !! | TAGGATTAATATTTGACAAA+AGG | + | chr1_1:51244612-51244631 | None:intergenic | 20.0% |
| !!! | TAAACTTTTTTATCCAAACA+AGG | + | chr1_1:51244653-51244672 | None:intergenic | 20.0% |
| !! | GAAATCCAACTTAAAAAATT+AGG | - | chr1_1:51245791-51245810 | Msa0027050:intron | 20.0% |
| !! | AAGAATTGAAATACTATATC+AGG | + | chr1_1:51245861-51245880 | None:intergenic | 20.0% |
| !! | TTATATTAATCCATAGTTCA+AGG | + | chr1_1:51245890-51245909 | None:intergenic | 20.0% |
| !!! | TTGAACTATGGATTAATATA+AGG | - | chr1_1:51245889-51245908 | Msa0027050:intron | 20.0% |
| !!! | TGAACTATGGATTAATATAA+GGG | - | chr1_1:51245890-51245909 | Msa0027050:intron | 20.0% |
| !! | CAAAAGATAAAATTAAATGC+AGG | + | chr1_1:51246226-51246245 | None:intergenic | 20.0% |
| !! | AATGATTGATTATTTAACTG+AGG | - | chr1_1:51246342-51246361 | Msa0027050:intron | 20.0% |
| !! | ATGATTGATTATTTAACTGA+GGG | - | chr1_1:51246343-51246362 | Msa0027050:intron | 20.0% |
| !!! | TTTCACTGTTAAGATTTTTA+TGG | + | chr1_1:51246800-51246819 | None:intergenic | 20.0% |
| !! | ATTATGAGATATAAAAGAAG+AGG | + | chr1_1:51247295-51247314 | None:intergenic | 20.0% |
| ! | TTCTGTGAATGAATGAATAA+TGG | + | chr1_1:51243805-51243824 | None:intergenic | 25.0% |
| !! | GATTTAGAATAAACAACAAC+AGG | + | chr1_1:51244130-51244149 | None:intergenic | 25.0% |
| !!! | TTGTTGTTTATTCTAAATCC+TGG | - | chr1_1:51244131-51244150 | Msa0027050:CDS | 25.0% |
| ! | GCAATAATTGAGGTTAATTA+GGG | + | chr1_1:51244249-51244268 | None:intergenic | 25.0% |
| ! | AGCAATAATTGAGGTTAATT+AGG | + | chr1_1:51244250-51244269 | None:intergenic | 25.0% |
| ! | ATCCATGAATAAATTTGCAA+TGG | + | chr1_1:51244275-51244294 | None:intergenic | 25.0% |
| !! | CTTAATTGATTTCTGTGTTT+AGG | - | chr1_1:51244306-51244325 | Msa0027050:intron | 25.0% |
| ! | TTAATCCTAATTTAAACCCA+AGG | - | chr1_1:51244623-51244642 | Msa0027050:intron | 25.0% |
| !!! | ATATTTTAGTCATGCTGATT+AGG | - | chr1_1:51244879-51244898 | Msa0027050:intron | 25.0% |
| ! | TGATTAGGTTATCATAACTT+AGG | - | chr1_1:51244894-51244913 | Msa0027050:intron | 25.0% |
| ! | GATATATAAGTAGTACTTCT+GGG | - | chr1_1:51245000-51245019 | Msa0027050:intron | 25.0% |
| !! | ACGTGAAGCATTTAAAATTT+AGG | + | chr1_1:51245342-51245361 | None:intergenic | 25.0% |
| ! | TTAGAAATCATTAGATCCAA+AGG | - | chr1_1:51245500-51245519 | Msa0027050:intron | 25.0% |
| ! | AAAACATTGCATTGGAAATT+AGG | + | chr1_1:51245574-51245593 | None:intergenic | 25.0% |
| ! | AATATAAGGGTAATGTTAAC+TGG | - | chr1_1:51245903-51245922 | Msa0027050:intron | 25.0% |
| ! | TGATTGATTATTTAACTGAG+GGG | - | chr1_1:51246344-51246363 | Msa0027050:intron | 25.0% |
| ! | TAACCATTTAAATCCTCTTA+TGG | - | chr1_1:51246627-51246646 | Msa0027050:intron | 25.0% |
| ! | TGACAAATATCATTTCTGTT+TGG | - | chr1_1:51246736-51246755 | Msa0027050:intron | 25.0% |
| ! | AAAATAATGAGGGAAACAAA+AGG | + | chr1_1:51246838-51246857 | None:intergenic | 25.0% |
| ! | TGCACAAGTAAAAATAATGA+GGG | + | chr1_1:51246848-51246867 | None:intergenic | 25.0% |
| ! | AATATTACTCTCATCCTAAA+GGG | - | chr1_1:51246955-51246974 | Msa0027050:CDS | 25.0% |
| ! | TCGTGTAATGATTCTTAAAT+TGG | - | chr1_1:51247124-51247143 | Msa0027050:CDS | 25.0% |
| TATTCATTCATTCACAGAAC+AGG | - | chr1_1:51243806-51243825 | Msa0027050:three_prime_UTR | 30.0% | |
| AAGAAGAAGAAGAAGAAGAA+TGG | + | chr1_1:51243895-51243914 | None:intergenic | 30.0% | |
| !! | AGTGAAAATTTTGGAGATAG+AGG | + | chr1_1:51243921-51243940 | None:intergenic | 30.0% |
| ! | GGTGTAGAAAGTGAAAATTT+TGG | + | chr1_1:51243930-51243949 | None:intergenic | 30.0% |
| AAATCCTTGTTCAAGAAACT+CGG | - | chr1_1:51244175-51244194 | Msa0027050:CDS | 30.0% | |
| TGCCATTGCAAATTTATTCA+TGG | - | chr1_1:51244270-51244289 | Msa0027050:intron | 30.0% | |
| AAGTTATTGGAAAGAATCAC+TGG | - | chr1_1:51244351-51244370 | Msa0027050:intron | 30.0% | |
| GCTTACCAATAAAGACATTT+GGG | + | chr1_1:51244389-51244408 | None:intergenic | 30.0% | |
| TGCTTACCAATAAAGACATT+TGG | + | chr1_1:51244390-51244409 | None:intergenic | 30.0% | |
| TTTACACATATATGCTTTGC+CGG | - | chr1_1:51244462-51244481 | Msa0027050:intron | 30.0% | |
| ! | ATTGAATCTGAAACACATAC+CGG | + | chr1_1:51244484-51244503 | None:intergenic | 30.0% |
| TTACGTTTACATCCAATGAT+GGG | + | chr1_1:51244521-51244540 | None:intergenic | 30.0% | |
| TTTACGTTTACATCCAATGA+TGG | + | chr1_1:51244522-51244541 | None:intergenic | 30.0% | |
| TGATAAGCGCTTATACTATA+TGG | + | chr1_1:51244683-51244702 | None:intergenic | 30.0% | |
| AAGTTATCATGTAGAGCTTA+TGG | - | chr1_1:51244752-51244771 | Msa0027050:intron | 30.0% | |
| TATTCCATCATCTTATCTAC+TGG | + | chr1_1:51244833-51244852 | None:intergenic | 30.0% | |
| TGATTGAGAGTGGTTATATT+AGG | - | chr1_1:51244944-51244963 | Msa0027050:intron | 30.0% | |
| GGATATATAAGTAGTACTTC+TGG | - | chr1_1:51244999-51245018 | Msa0027050:intron | 30.0% | |
| ATAGCAAGAGAAATTTCATC+TGG | - | chr1_1:51245150-51245169 | Msa0027050:intron | 30.0% | |
| TAGCAAGAGAAATTTCATCT+GGG | - | chr1_1:51245151-51245170 | Msa0027050:intron | 30.0% | |
| ! | AGGAGGAACTTTTGAATATT+TGG | - | chr1_1:51245275-51245294 | Msa0027050:intron | 30.0% |
| GTTGTCTAAAAACATTGCAT+TGG | + | chr1_1:51245582-51245601 | None:intergenic | 30.0% | |
| TTTAGACAACTAAATTTCCC+AGG | - | chr1_1:51245592-51245611 | Msa0027050:intron | 30.0% | |
| TTAGACAACTAAATTTCCCA+GGG | - | chr1_1:51245593-51245612 | Msa0027050:intron | 30.0% | |
| TGCAAACATAGAAATGAAGA+GGG | + | chr1_1:51245624-51245643 | None:intergenic | 30.0% | |
| TTGCAAACATAGAAATGAAG+AGG | + | chr1_1:51245625-51245644 | None:intergenic | 30.0% | |
| GATATACGTTCTTTACAGAA+AGG | + | chr1_1:51245735-51245754 | None:intergenic | 30.0% | |
| ACTCCAATACATGTAATTGT+AGG | - | chr1_1:51245761-51245780 | Msa0027050:intron | 30.0% | |
| !!! | TGTGGCCTAATTTTTTAAGT+TGG | + | chr1_1:51245799-51245818 | None:intergenic | 30.0% |
| !! | GTAACAGACTTATGTTGTTT+TGG | + | chr1_1:51246203-51246222 | None:intergenic | 30.0% |
| CTGCAATGAAGAAAACTTTA+GGG | + | chr1_1:51246270-51246289 | None:intergenic | 30.0% | |
| GATTGATTATTTAACTGAGG+GGG | - | chr1_1:51246345-51246364 | Msa0027050:intron | 30.0% | |
| ATTGATTATTTAACTGAGGG+GGG | - | chr1_1:51246346-51246365 | Msa0027050:intron | 30.0% | |
| ATGCAGACAATTTACATTTG+CGG | + | chr1_1:51246547-51246566 | None:intergenic | 30.0% | |
| AGAGGATTTAAATGGTTAAC+TGG | + | chr1_1:51246625-51246644 | None:intergenic | 30.0% | |
| ! | TACATGCATAACTGATAATG+TGG | + | chr1_1:51246690-51246709 | None:intergenic | 30.0% |
| ATGATATTTGTCACAATGAG+AGG | + | chr1_1:51246729-51246748 | None:intergenic | 30.0% | |
| CTGCACAAGTAAAAATAATG+AGG | + | chr1_1:51246849-51246868 | None:intergenic | 30.0% | |
| AGAAGCTGTTGCTAAAAATA+AGG | - | chr1_1:51246915-51246934 | Msa0027050:CDS | 30.0% | |
| GAAGCTGTTGCTAAAAATAA+GGG | - | chr1_1:51246916-51246935 | Msa0027050:CDS | 30.0% | |
| AAGCTGTTGCTAAAAATAAG+GGG | - | chr1_1:51246917-51246936 | Msa0027050:CDS | 30.0% | |
| CAATATTACTCTCATCCTAA+AGG | - | chr1_1:51246954-51246973 | Msa0027050:CDS | 30.0% | |
| TATTAACTCAGTGCTTTCAA+GGG | + | chr1_1:51247014-51247033 | None:intergenic | 30.0% | |
| ATTAGACCCTAATAAATCTG+TGG | - | chr1_1:51247049-51247068 | Msa0027050:CDS | 30.0% | |
| CTCAAACCACAGATTTATTA+GGG | + | chr1_1:51247058-51247077 | None:intergenic | 30.0% | |
| CTAATAAATCTGTGGTTTGA+GGG | - | chr1_1:51247057-51247076 | Msa0027050:CDS | 30.0% | |
| !!! | ATTCAGTTTTCAGGTACAAA+AGG | + | chr1_1:51247104-51247123 | None:intergenic | 30.0% |
| ! | ATTACACGAATTCAGTTTTC+AGG | + | chr1_1:51247113-51247132 | None:intergenic | 30.0% |
| AAATTGGTCATTTAAATGCC+TGG | - | chr1_1:51247140-51247159 | Msa0027050:CDS | 30.0% | |
| AATTGGTCATTTAAATGCCT+GGG | - | chr1_1:51247141-51247160 | Msa0027050:CDS | 30.0% | |
| GTAAGAACTAATTAGATCTG+TGG | - | chr1_1:51247174-51247193 | Msa0027050:CDS | 30.0% | |
| AAGACTTTAGGTGATTGGTA+CGG | - | chr1_1:51243762-51243781 | Msa0027050:three_prime_UTR | 35.0% | |
| AATGAATAATGGTCGAACGA+AGG | + | chr1_1:51243794-51243813 | None:intergenic | 35.0% | |
| CAGAACAGGAAAGTGAATAA+TGG | - | chr1_1:51243820-51243839 | Msa0027050:three_prime_UTR | 35.0% | |
| GTGAATAATGGCTTCATCAA+TGG | - | chr1_1:51243832-51243851 | Msa0027050:three_prime_UTR | 35.0% | |
| AGAAGAAGAAGAAGAAGACA+TGG | + | chr1_1:51244023-51244042 | None:intergenic | 35.0% | |
| AAAGAAGGAGAAGAAGAAGA+GGG | + | chr1_1:51244061-51244080 | None:intergenic | 35.0% | |
| AAAAGAAGGAGAAGAAGAAG+AGG | + | chr1_1:51244062-51244081 | None:intergenic | 35.0% | |
| ! | TCTTCTTCTTCTCCTTCTTT+TGG | - | chr1_1:51244061-51244080 | Msa0027050:three_prime_UTR | 35.0% |
| !! | TTGAGAAACGGTGTTTTTGA+TGG | + | chr1_1:51244104-51244123 | None:intergenic | 35.0% |
| !!! | AACAACAGGGTTTTGAGAAA+CGG | + | chr1_1:51244116-51244135 | None:intergenic | 35.0% |
| TCCACAATTGCAGAAGTTAT+TGG | - | chr1_1:51244338-51244357 | Msa0027050:intron | 35.0% | |
| TCCAATAACTTCTGCAATTG+TGG | + | chr1_1:51244342-51244361 | None:intergenic | 35.0% | |
| ACTGTCCCAAATGTCTTTAT+TGG | - | chr1_1:51244381-51244400 | Msa0027050:intron | 35.0% | |
| GTGTTCCTTGGGTTTAAATT+AGG | + | chr1_1:51244631-51244650 | None:intergenic | 35.0% | |
| TATGCCAGTAGATAAGATGA+TGG | - | chr1_1:51244826-51244845 | Msa0027050:intron | 35.0% | |
| TGAGAGTGGTTATATTAGGT+AGG | - | chr1_1:51244948-51244967 | Msa0027050:intron | 35.0% | |
| AAACTCTCTTGAAACAACCA+CGG | - | chr1_1:51245232-51245251 | Msa0027050:intron | 35.0% | |
| !! | GTTTCCCAATGAGTTTGTTA+AGG | - | chr1_1:51245255-51245274 | Msa0027050:intron | 35.0% |
| TCCTCCTTAACAAACTCATT+GGG | + | chr1_1:51245262-51245281 | None:intergenic | 35.0% | |
| TTCCTCCTTAACAAACTCAT+TGG | + | chr1_1:51245263-51245282 | None:intergenic | 35.0% | |
| CATTGTTAGCAAAATAGCTG+AGG | - | chr1_1:51245365-51245384 | Msa0027050:intron | 35.0% | |
| CAACACTTGTATCAAACTCT+TGG | + | chr1_1:51245469-51245488 | None:intergenic | 35.0% | |
| ACATTGCATTGGAAATTAGG+TGG | + | chr1_1:51245571-51245590 | None:intergenic | 35.0% | |
| GATCTCTACTATTTGCACAT+GGG | - | chr1_1:51245665-51245684 | Msa0027050:intron | 35.0% | |
| GTTCTTTACAGAAAGGACTT+TGG | + | chr1_1:51245728-51245747 | None:intergenic | 35.0% | |
| GAGCCTACAATTACATGTAT+TGG | + | chr1_1:51245767-51245786 | None:intergenic | 35.0% | |
| AAACTTTCTGCGATTGTGAA+TGG | + | chr1_1:51245826-51245845 | None:intergenic | 35.0% | |
| TAATCCATAGTTCAAGGCAT+GGG | + | chr1_1:51245884-51245903 | None:intergenic | 35.0% | |
| TTAATCCATAGTTCAAGGCA+TGG | + | chr1_1:51245885-51245904 | None:intergenic | 35.0% | |
| ! | TTAACATTTTCTCCTTCTCC+CGG | + | chr1_1:51246124-51246143 | None:intergenic | 35.0% |
| CCTGCAATGAAGAAAACTTT+AGG | + | chr1_1:51246271-51246290 | None:intergenic | 35.0% | |
| ! | CCTAAAGTTTTCTTCATTGC+AGG | - | chr1_1:51246268-51246287 | Msa0027050:intron | 35.0% |
| ! | AAAGTTTTCTTCATTGCAGG+TGG | - | chr1_1:51246271-51246290 | Msa0027050:intron | 35.0% |
| ! | AATCATTCAACAAGAGCACA+AGG | + | chr1_1:51246329-51246348 | None:intergenic | 35.0% |
| ! | TATCGCGATAATTTGTCTCA+CGG | - | chr1_1:51246596-51246615 | Msa0027050:intron | 35.0% |
| CAGCCATAAGAGGATTTAAA+TGG | + | chr1_1:51246633-51246652 | None:intergenic | 35.0% | |
| CATTTAAATCCTCTTATGGC+TGG | - | chr1_1:51246631-51246650 | Msa0027050:intron | 35.0% | |
| TTTATGGAACTGTGTAACGT+TGG | + | chr1_1:51246784-51246803 | None:intergenic | 35.0% | |
| GAAACAAAAGGAGAAGACAA+AGG | + | chr1_1:51246826-51246845 | None:intergenic | 35.0% | |
| GGATGAGAGTAATATTGACA+AGG | + | chr1_1:51246951-51246970 | None:intergenic | 35.0% | |
| TATATGCGACAAATTGCAAC+CGG | + | chr1_1:51246989-51247008 | None:intergenic | 35.0% | |
| GTATTAACTCAGTGCTTTCA+AGG | + | chr1_1:51247015-51247034 | None:intergenic | 35.0% | |
| CCTCAAACCACAGATTTATT+AGG | + | chr1_1:51247059-51247078 | None:intergenic | 35.0% | |
| CCTAATAAATCTGTGGTTTG+AGG | - | chr1_1:51247056-51247075 | Msa0027050:CDS | 35.0% | |
| TTCTTACAGTGTTAATTCCC+AGG | + | chr1_1:51247161-51247180 | None:intergenic | 35.0% | |
| GTTCATCAATTTCATTTGCC+TGG | + | chr1_1:51247210-51247229 | None:intergenic | 35.0% | |
| ! | GTTACATCGTGACAAGTTTT+AGG | - | chr1_1:51247250-51247269 | Msa0027050:five_prime_UTR | 35.0% |
| AGCAGAAGACTTTAGGTGAT+TGG | - | chr1_1:51243757-51243776 | Msa0027050:three_prime_UTR | 40.0% | |
| AATAATGGTCGAACGAAGGA+AGG | + | chr1_1:51243790-51243809 | None:intergenic | 40.0% | |
| ! | TGGTTTTTGTTGAAGTAGCG+AGG | + | chr1_1:51243875-51243894 | None:intergenic | 40.0% |
| !! | GATGCATTGGTGATGATGAT+GGG | + | chr1_1:51243971-51243990 | None:intergenic | 40.0% |
| !! | TGATGCATTGGTGATGATGA+TGG | + | chr1_1:51243972-51243991 | None:intergenic | 40.0% |
| ! | AGTACCGAGTTTCTTGAACA+AGG | + | chr1_1:51244182-51244201 | None:intergenic | 40.0% |
| TCAACCATTGGTCATCGAAT+TGG | - | chr1_1:51244201-51244220 | Msa0027050:intron | 40.0% | |
| GCAATGGCAAGCAATAATTG+AGG | + | chr1_1:51244259-51244278 | None:intergenic | 40.0% | |
| TTTCTGTGTTTAGGTCCACA+AGG | - | chr1_1:51244315-51244334 | Msa0027050:intron | 40.0% | |
| ! | AGACATTTGGGACAGTGTAT+TGG | + | chr1_1:51244377-51244396 | None:intergenic | 40.0% |
| ! | ATCCAAACAAGGTGTTCCTT+GGG | + | chr1_1:51244642-51244661 | None:intergenic | 40.0% |
| ! | TATCCAAACAAGGTGTTCCT+TGG | + | chr1_1:51244643-51244662 | None:intergenic | 40.0% |
| ! | AAGTAGTACTTCTGGGTTGA+AGG | - | chr1_1:51245007-51245026 | Msa0027050:intron | 40.0% |
| TTTGTGCCAGAAAAGTGAGA+GGG | - | chr1_1:51245082-51245101 | Msa0027050:intron | 40.0% | |
| AACTCTCTTGAAACAACCAC+GGG | - | chr1_1:51245233-51245252 | Msa0027050:intron | 40.0% | |
| !! | TCCCAATGAGTTTGTTAAGG+AGG | - | chr1_1:51245258-51245277 | Msa0027050:intron | 40.0% |
| ! | TTGGTGACTTTGAGAACGAT+TGG | - | chr1_1:51245294-51245313 | Msa0027050:intron | 40.0% |
| ! | TGGTGACTTTGAGAACGATT+GGG | - | chr1_1:51245295-51245314 | Msa0027050:intron | 40.0% |
| ! | TCCTCAATGGCTTTTCCTTA+GGG | + | chr1_1:51245422-51245441 | None:intergenic | 40.0% |
| AAACTCTTGGAGGATACTTG+GGG | + | chr1_1:51245456-51245475 | None:intergenic | 40.0% | |
| CAAACTCTTGGAGGATACTT+GGG | + | chr1_1:51245457-51245476 | None:intergenic | 40.0% | |
| TCAAACTCTTGGAGGATACT+TGG | + | chr1_1:51245458-51245477 | None:intergenic | 40.0% | |
| CACTTGTATCAAACTCTTGG+AGG | + | chr1_1:51245466-51245485 | None:intergenic | 40.0% | |
| TGCTAGATGAACTTCTCCTT+TGG | + | chr1_1:51245519-51245538 | None:intergenic | 40.0% | |
| AATGGCAATGGCAATGACAA+TGG | + | chr1_1:51245547-51245566 | None:intergenic | 40.0% | |
| AAATTAGGTGGCAATGGCAA+TGG | + | chr1_1:51245559-51245578 | None:intergenic | 40.0% | |
| CATTGGAAATTAGGTGGCAA+TGG | + | chr1_1:51245565-51245584 | None:intergenic | 40.0% | |
| CGATCTCTACTATTTGCACA+TGG | - | chr1_1:51245664-51245683 | Msa0027050:intron | 40.0% | |
| ! | TTAACATACTGGTTGGGCTA+AGG | - | chr1_1:51246072-51246091 | Msa0027050:intron | 40.0% |
| ! | TAACATACTGGTTGGGCTAA+GGG | - | chr1_1:51246073-51246092 | Msa0027050:intron | 40.0% |
| CTAAGGGTTGAAGAAGACAA+CGG | - | chr1_1:51246089-51246108 | Msa0027050:intron | 40.0% | |
| TAAGGGTTGAAGAAGACAAC+GGG | - | chr1_1:51246090-51246109 | Msa0027050:intron | 40.0% | |
| GAATAATGCTTCAGTCACTG+AGG | + | chr1_1:51246405-51246424 | None:intergenic | 40.0% | |
| GAATAATGCTTCAGTCACTG+AGG | + | chr1_1:51246405-51246424 | None:intergenic | 40.0% | |
| ATGCATGTATGACGCTTTCA+TGG | - | chr1_1:51246701-51246720 | Msa0027050:CDS | 40.0% | |
| CAGATACACTTAAGCTGTAC+AGG | - | chr1_1:51246866-51246885 | Msa0027050:CDS | 40.0% | |
| ACACTTAAGCTGTACAGGAA+AGG | - | chr1_1:51246871-51246890 | Msa0027050:CDS | 40.0% | |
| CTTCTGATAGCAGAGTTTCA+AGG | + | chr1_1:51246900-51246919 | None:intergenic | 40.0% | |
| ATCCTAAAGGGAATCTGATC+CGG | - | chr1_1:51246967-51246986 | Msa0027050:CDS | 40.0% | |
| GAAGAGGCTCATAAAACAGA+AGG | + | chr1_1:51247279-51247298 | None:intergenic | 40.0% | |
| ATGGGTGAAGGAGTGGAAAT+GGG | + | chr1_1:51243953-51243972 | None:intergenic | 45.0% | |
| !! | TTGGTGATGATGATGGGTGA+AGG | + | chr1_1:51243965-51243984 | None:intergenic | 45.0% |
| AAGAAGAAGACATGGCTCGA+GGG | + | chr1_1:51244015-51244034 | None:intergenic | 45.0% | |
| GAAACTCGGTACTCAACCAT+TGG | - | chr1_1:51244189-51244208 | Msa0027050:intron | 45.0% | |
| TCGTCCAATTCGATGACCAA+TGG | + | chr1_1:51244208-51244227 | None:intergenic | 45.0% | |
| GTCATCGAATTGGACGAACT+GGG | - | chr1_1:51244211-51244230 | Msa0027050:intron | 45.0% | |
| TTCTGCAATTGTGGACCTTG+TGG | + | chr1_1:51244333-51244352 | None:intergenic | 45.0% | |
| TTGACGTGACAACCCATCAT+TGG | - | chr1_1:51244506-51244525 | Msa0027050:intron | 45.0% | |
| AACCCAAGGAACACCTTGTT+TGG | - | chr1_1:51244637-51244656 | Msa0027050:intron | 45.0% | |
| CAGACTTCTGTGATTGAGAG+TGG | - | chr1_1:51244934-51244953 | Msa0027050:intron | 45.0% | |
| CTGGCACAAACACAGATTCT+TGG | + | chr1_1:51245072-51245091 | None:intergenic | 45.0% | |
| GTTTGTGCCAGAAAAGTGAG+AGG | - | chr1_1:51245081-51245100 | Msa0027050:intron | 45.0% | |
| !! | TTCTCTCCCTCTCACTTTTC+TGG | + | chr1_1:51245091-51245110 | None:intergenic | 45.0% |
| ACCCTAAGGAAAAGCCATTG+AGG | - | chr1_1:51245418-51245437 | Msa0027050:intron | 45.0% | |
| ! | CTCCTCAATGGCTTTTCCTT+AGG | + | chr1_1:51245423-51245442 | None:intergenic | 45.0% |
| GGCTCAAAATGTCTCCTCAA+TGG | + | chr1_1:51245435-51245454 | None:intergenic | 45.0% | |
| AATGAAGAGGGATTCACCCT+GGG | + | chr1_1:51245612-51245631 | None:intergenic | 45.0% | |
| AAATGAAGAGGGATTCACCC+TGG | + | chr1_1:51245613-51245632 | None:intergenic | 45.0% | |
| ! | CTATTTGCACATGGGTTGTG+AGG | - | chr1_1:51245673-51245692 | Msa0027050:intron | 45.0% |
| TCTTCCCATGCCTTGAACTA+TGG | - | chr1_1:51245877-51245896 | Msa0027050:intron | 45.0% | |
| ! | CACCGGTTAACATACTGGTT+GGG | - | chr1_1:51246066-51246085 | Msa0027050:intron | 45.0% |
| AGCCCAACCAGTATGTTAAC+CGG | + | chr1_1:51246071-51246090 | None:intergenic | 45.0% | |
| AAGGGTTGAAGAAGACAACG+GGG | - | chr1_1:51246091-51246110 | Msa0027050:intron | 45.0% | |
| AAGACAACGGGGTTCAAAAC+CGG | - | chr1_1:51246102-51246121 | Msa0027050:intron | 45.0% | |
| ! | GCATGTTTTCCAGCCATAAG+AGG | + | chr1_1:51246643-51246662 | None:intergenic | 45.0% |
| AACCGGATCAGATTCCCTTT+AGG | + | chr1_1:51246972-51246991 | None:intergenic | 45.0% | |
| !!! | TATATTAGATTTTTTTTTAT+AGG | + | chr1_1:51246175-51246194 | None:intergenic | 5.0% |
| TGGGTGAAGGAGTGGAAATG+GGG | + | chr1_1:51243952-51243971 | None:intergenic | 50.0% | |
| GATGGGTGAAGGAGTGGAAA+TGG | + | chr1_1:51243954-51243973 | None:intergenic | 50.0% | |
| !! | GATGATGATGGGTGAAGGAG+TGG | + | chr1_1:51243960-51243979 | None:intergenic | 50.0% |
| GAAGAAGAAGACATGGCTCG+AGG | + | chr1_1:51244016-51244035 | None:intergenic | 50.0% | |
| GGAGAAGAAGAAGAGGGAGA+AGG | + | chr1_1:51244055-51244074 | None:intergenic | 50.0% | |
| TCGAGACGAGAGCCAAAAGA+AGG | + | chr1_1:51244076-51244095 | None:intergenic | 50.0% | |
| !! | CTCAGAGCAATAAGAGCACC+AGG | + | chr1_1:51244152-51244171 | None:intergenic | 50.0% |
| CTGGTGCTCTTATTGCTCTG+AGG | - | chr1_1:51244150-51244169 | Msa0027050:CDS | 50.0% | |
| GGTCATCGAATTGGACGAAC+TGG | - | chr1_1:51244210-51244229 | Msa0027050:intron | 50.0% | |
| ! | GTACTTCTGGGTTGAAGGCA+TGG | - | chr1_1:51245012-51245031 | Msa0027050:intron | 50.0% |
| CAAACTCATTGGGAAACCCG+TGG | + | chr1_1:51245252-51245271 | None:intergenic | 50.0% | |
| TGAGGAGACCTAGTAGCAGA+AGG | - | chr1_1:51245383-51245402 | Msa0027050:intron | 50.0% | |
| GAGGAGACCTAGTAGCAGAA+GGG | - | chr1_1:51245384-51245403 | Msa0027050:intron | 50.0% | |
| AGGAGACCTAGTAGCAGAAG+GGG | - | chr1_1:51245385-51245404 | Msa0027050:intron | 50.0% | |
| TCACAACCCCTTCTGCTACT+AGG | + | chr1_1:51245394-51245413 | None:intergenic | 50.0% | |
| TAGTAGCAGAAGGGGTTGTG+AGG | - | chr1_1:51245393-51245412 | Msa0027050:intron | 50.0% | |
| AGTAGCAGAAGGGGTTGTGA+GGG | - | chr1_1:51245394-51245413 | Msa0027050:intron | 50.0% | |
| GCGATTGTGAATGGTGAGTG+TGG | + | chr1_1:51245817-51245836 | None:intergenic | 50.0% | |
| GTAATGTTAACTGGTGCCCC+CGG | - | chr1_1:51245912-51245931 | Msa0027050:intron | 50.0% | |
| TAATGTTAACTGGTGCCCCC+GGG | - | chr1_1:51245913-51245932 | Msa0027050:intron | 50.0% | |
| GGTTTCCTTAACCTTTGCCC+CGG | - | chr1_1:51246040-51246059 | Msa0027050:intron | 50.0% | |
| GTTTCCTTAACCTTTGCCCC+GGG | - | chr1_1:51246041-51246060 | Msa0027050:intron | 50.0% | |
| TTTCCTTAACCTTTGCCCCG+GGG | - | chr1_1:51246042-51246061 | Msa0027050:intron | 50.0% | |
| !! | GCACCGGTTAACATACTGGT+TGG | - | chr1_1:51246065-51246084 | Msa0027050:intron | 50.0% |
| AGACAACGGGGTTCAAAACC+GGG | - | chr1_1:51246103-51246122 | Msa0027050:intron | 50.0% | |
| ATTGCAGGTGGCCAACACAT+TGG | - | chr1_1:51246283-51246302 | Msa0027050:intron | 50.0% | |
| CTGTACAGCCACCAATGTGT+TGG | + | chr1_1:51246297-51246316 | None:intergenic | 50.0% | |
| ! | CAACACATTGGTGGCTGTAC+AGG | - | chr1_1:51246295-51246314 | Msa0027050:intron | 50.0% |
| ATCTGTGGTTTGAGTGCTCC+AGG | - | chr1_1:51247189-51247208 | Msa0027050:CDS | 50.0% | |
| GGGTGAAGGAGTGGAAATGG+GGG | + | chr1_1:51243951-51243970 | None:intergenic | 55.0% | |
| GACATGGCTCGAGGGAAAGT+GGG | + | chr1_1:51244007-51244026 | None:intergenic | 55.0% | |
| AGACATGGCTCGAGGGAAAG+TGG | + | chr1_1:51244008-51244027 | None:intergenic | 55.0% | |
| AATGTTAACTGGTGCCCCCG+GGG | - | chr1_1:51245914-51245933 | Msa0027050:intron | 55.0% | |
| TTGCTCCTTAACCAGTGCCC+CGG | + | chr1_1:51245934-51245953 | None:intergenic | 55.0% | |
| TTCCTTAACCTTTGCCCCGG+GGG | - | chr1_1:51246043-51246062 | Msa0027050:intron | 55.0% | |
| AGTATGTTAACCGGTGCCCC+CGG | + | chr1_1:51246062-51246081 | None:intergenic | 55.0% | |
| ! | TGCGCGGCGTGATGATGCAT+TGG | + | chr1_1:51243984-51244003 | None:intergenic | 60.0% |
| GGGGTTGTGAGGGAACCCTA+AGG | - | chr1_1:51245404-51245423 | Msa0027050:intron | 60.0% | |
| TGCTCCTTAACCAGTGCCCC+GGG | + | chr1_1:51245933-51245952 | None:intergenic | 60.0% | |
| TATGTTAACCGGTGCCCCCG+GGG | + | chr1_1:51246060-51246079 | None:intergenic | 60.0% | |
| GTATGTTAACCGGTGCCCCC+GGG | + | chr1_1:51246061-51246080 | None:intergenic | 60.0% | |
| !! | GGGGGCACCGGTTAACATAC+TGG | - | chr1_1:51246061-51246080 | Msa0027050:intron | 60.0% |
| CGGGGTTCAAAACCGGGAGA+AGG | - | chr1_1:51246109-51246128 | Msa0027050:intron | 60.0% | |
| GCAGGTGGCCAACACATTGG+TGG | - | chr1_1:51246286-51246305 | Msa0027050:intron | 60.0% | |
| CTCGAGGGAAAGTGGGTGCG+CGG | + | chr1_1:51244000-51244019 | None:intergenic | 65.0% | |
| CTCCTTAACCAGTGCCCCGG+GGG | + | chr1_1:51245931-51245950 | None:intergenic | 65.0% | |
| GCTCCTTAACCAGTGCCCCG+GGG | + | chr1_1:51245932-51245951 | None:intergenic | 65.0% | |
| TGCCCCCGGGGCAAAGGTTA+AGG | + | chr1_1:51246048-51246067 | None:intergenic | 65.0% | |
| !! | TGCCCCCGGGGCACTGGTTA+AGG | - | chr1_1:51245926-51245945 | Msa0027050:intron | 70.0% |
| ! | AACCTTTGCCCCGGGGGCAC+CGG | - | chr1_1:51246049-51246068 | Msa0027050:intron | 70.0% |
| AACTGGTGCCCCCGGGGCAC+TGG | - | chr1_1:51245920-51245939 | Msa0027050:intron | 75.0% | |
| AACCGGTGCCCCCGGGGCAA+AGG | + | chr1_1:51246054-51246073 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 51243752 | 51247324 | 51243752 | ID=Msa0027050;Name=Msa0027050 |
| chr1_1 | mRNA | 51243752 | 51247324 | 51243752 | ID=Msa0027050-mRNA-1;Parent=Msa0027050;Name=Msa0027050-mRNA-1;_AED=0.15;_eAED=0.15;_QI=87|0.66|0.75|1|1|1|4|379|203 |
| chr1_1 | exon | 51243752 | 51244207 | 51243752 | ID=Msa0027050-mRNA-1:exon:14948;Parent=Msa0027050-mRNA-1 |
| chr1_1 | exon | 51244760 | 51244825 | 51244760 | ID=Msa0027050-mRNA-1:exon:14947;Parent=Msa0027050-mRNA-1 |
| chr1_1 | exon | 51246674 | 51246748 | 51246674 | ID=Msa0027050-mRNA-1:exon:14946;Parent=Msa0027050-mRNA-1 |
| chr1_1 | exon | 51246844 | 51247324 | 51246844 | ID=Msa0027050-mRNA-1:exon:14945;Parent=Msa0027050-mRNA-1 |
| chr1_1 | five_prime_UTR | 51247238 | 51247324 | 51247238 | ID=Msa0027050-mRNA-1:five_prime_utr;Parent=Msa0027050-mRNA-1 |
| chr1_1 | CDS | 51246844 | 51247237 | 51246844 | ID=Msa0027050-mRNA-1:cds;Parent=Msa0027050-mRNA-1 |
| chr1_1 | CDS | 51246674 | 51246748 | 51246674 | ID=Msa0027050-mRNA-1:cds;Parent=Msa0027050-mRNA-1 |
| chr1_1 | CDS | 51244760 | 51244825 | 51244760 | ID=Msa0027050-mRNA-1:cds;Parent=Msa0027050-mRNA-1 |
| chr1_1 | CDS | 51244131 | 51244207 | 51244131 | ID=Msa0027050-mRNA-1:cds;Parent=Msa0027050-mRNA-1 |
| chr1_1 | three_prime_UTR | 51243752 | 51244130 | 51243752 | ID=Msa0027050-mRNA-1:three_prime_utr;Parent=Msa0027050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
