AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0014960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0014960 MtrunA17_Chr1g0165641 82.759 174 15 3 1 170 1 163 2.25e-98 281
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0014960 AT5G17560.1 75.269 93 23 0 73 165 84 176 1.89e-48 155
Msa0014960 AT5G17560.3 61.224 49 19 0 73 121 84 132 1.07e-15 70.1
Msa0014960 AT5G17560.2 63.830 47 17 0 73 119 84 130 1.29e-15 69.7

Find 53 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGTATTCCAATTCACTTTC+TGG 0.127886 1_1:+23986445 Msa0014960:three_prime_UTR
CCGCAAAGCTCTTCCCGTTT+TGG 0.252036 1_1:+23982186 Msa0014960:CDS
AAACATAATGGAGAAGTAAA+TGG 0.273966 1_1:-23986572 None:intergenic
AATAACTTCTCATCATGTTT+AGG 0.327504 1_1:-23982307 None:intergenic
GGCTGCTTCAGCAGGAGTTT+TGG 0.334170 1_1:-23986278 None:intergenic
TTTCTACGCTGTGTTGCTGC+TGG 0.353790 1_1:-23982110 None:intergenic
AACAAACCGCAGAACATTGC+TGG 0.379497 1_1:-23986534 None:intergenic
AGTATTCCAATTCACTTTCT+GGG 0.384864 1_1:+23986446 Msa0014960:three_prime_UTR
GCAACTCCCAGAAAGTGAAT+TGG 0.388129 1_1:-23986452 None:intergenic
CGCTGTGTTGCTGCTGGGAG+GGG 0.389003 1_1:-23982104 None:intergenic
GACCATCCTTTGCCTATTCA+CGG 0.418047 1_1:-23986197 None:intergenic
TTCCCGACGGCTGCTTCAGC+AGG 0.420097 1_1:-23986286 None:intergenic
AACATAATGGAGAAGTAAAT+GGG 0.420499 1_1:-23986571 None:intergenic
AAATTGTCAATTGTGTTGTT+TGG 0.421046 1_1:-23986491 None:intergenic
AGGGACAATCAGCCGTGAAT+AGG 0.422097 1_1:+23986185 Msa0014960:CDS
GTGGATTTGTTGTTACTGTA+AGG 0.425829 1_1:-23982214 None:intergenic
ATGGTGACGGACGCCATGTT+AGG 0.435349 1_1:+23984297 Msa0014960:CDS
GTCTCTGTAAAGGATGCTTA+TGG 0.438536 1_1:+23984278 Msa0014960:CDS
GGATGGTCTATAAAGCCATA+TGG 0.439769 1_1:+23986212 Msa0014960:CDS
CTGTAAGGTCGAACCAAAAC+GGG 0.449771 1_1:-23982199 None:intergenic
TTCTACGCTGTGTTGCTGCT+GGG 0.458487 1_1:-23982109 None:intergenic
GAGAGAAGTAGTTTGTGAAG+TGG 0.462902 1_1:-23982272 None:intergenic
ACTCTGAAGTTCCTCCCATA+TGG 0.475231 1_1:-23986227 None:intergenic
TTCTTTGTTTACCAACGTGT+TGG 0.482227 1_1:-23982034 None:intergenic
CATTCAATCTATGCAGCAAA+AGG 0.489634 1_1:+23982411 Msa0014960:CDS
ACGCTGTGTTGCTGCTGGGA+GGG 0.493070 1_1:-23982105 None:intergenic
ACTGTAAGGTCGAACCAAAA+CGG 0.500866 1_1:-23982200 None:intergenic
TTGTGAAGTGGATCTGAGGA+AGG 0.512703 1_1:-23982260 None:intergenic
CTCCTGCTGAAGCAGCCGTC+GGG 0.516243 1_1:+23986284 Msa0014960:CDS
TGCTGCATAGATTGAATGAG+AGG 0.526410 1_1:-23982406 None:intergenic
TGCAGAAACAGTCTCTGTAA+AGG 0.528582 1_1:+23984268 Msa0014960:CDS
AGGAGATATGATTACGAAAG+AGG 0.532714 1_1:-23982240 None:intergenic
CCAAAACGGGAAGAGCTTTG+CGG 0.536712 1_1:-23982186 None:intergenic
GATGGTCTATAAAGCCATAT+GGG 0.540058 1_1:+23986213 Msa0014960:CDS
GCTACTAATGTAAACGATGC+TGG 0.547238 1_1:+23982370 Msa0014960:CDS
TAGTTTGTGAAGTGGATCTG+AGG 0.554774 1_1:-23982264 None:intergenic
TGTTGTATCGACAGCCTTCG+AGG 0.555514 1_1:+23986165 Msa0014960:CDS
AAGAGCTTTGCGGAGTAAAG+TGG 0.561290 1_1:-23982176 None:intergenic
GTAAAGGATGCTTATGGTGA+CGG 0.570886 1_1:+23984284 Msa0014960:CDS
CACGGCTGATTGTCCCTCGA+AGG 0.576768 1_1:-23986179 None:intergenic
AGCTTTGCGGAGTAAAGTGG+TGG 0.589293 1_1:-23982173 None:intergenic
TACGCTGTGTTGCTGCTGGG+AGG 0.590932 1_1:-23982106 None:intergenic
ACTCCTGCTGAAGCAGCCGT+CGG 0.593007 1_1:+23986283 Msa0014960:CDS
CATTATCCAGCAATGTTCTG+CGG 0.602817 1_1:+23986528 Msa0014960:three_prime_UTR
AGCCGTGAATAGGCAAAGGA+TGG 0.626414 1_1:+23986195 Msa0014960:CDS
AATCAGCCGTGAATAGGCAA+AGG 0.635801 1_1:+23986191 Msa0014960:CDS
GTTGTATCGACAGCCTTCGA+GGG 0.642242 1_1:+23986166 Msa0014960:CDS
AATTGAAATCTCCAACACGT+TGG 0.654597 1_1:+23982023 None:intergenic
GATATGATTACGAAAGAGGA+CGG 0.660245 1_1:-23982236 None:intergenic
TGCATGTGAACACATTGCAA+TGG 0.665914 1_1:-23986416 None:intergenic
GGTCTATAAAGCCATATGGG+AGG 0.691387 1_1:+23986216 Msa0014960:CDS
GCTTTGCGGAGTAAAGTGGT+GGG 0.693255 1_1:-23982172 None:intergenic
ATGATTACGAAAGAGGACGG+TGG 0.708655 1_1:-23982233 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAGATATTTTAAATTTGAAG+AGG - chr1_1:23983441-23983460 None:intergenic 15.0%
!!! ATTTTGCTAGAAATTTATTT+AGG + chr1_1:23983670-23983689 Msa0014960:intron 15.0%
!!! ATATCTTTATTTTTCTATCT+AGG + chr1_1:23983699-23983718 Msa0014960:intron 15.0%
!! TATCTAAGTTTATGAAATTT+AGG - chr1_1:23983829-23983848 None:intergenic 15.0%
!! TAAATTTCATAAACTTAGAT+AGG + chr1_1:23983828-23983847 Msa0014960:intron 15.0%
!! AGTATCTAAATTTAGATATA+GGG + chr1_1:23983851-23983870 Msa0014960:intron 15.0%
!! ATGAAATTCTGAATTTATTT+AGG - chr1_1:23983898-23983917 None:intergenic 15.0%
!!! ATTTCATAATTCTAAGATAT+AGG + chr1_1:23983911-23983930 Msa0014960:intron 15.0%
!!! AATTTCATAATTCTAAGATA+TGG + chr1_1:23983910-23983929 Msa0014960:intron 15.0%
!!! ATTTCATAATTCTAAGATAT+GGG + chr1_1:23983911-23983930 Msa0014960:intron 15.0%
!!! TTAATTGTTATCTCTTTTTT+GGG + chr1_1:23984176-23984195 Msa0014960:intron 15.0%
!! TAGATATTTCAAATTTACTA+AGG - chr1_1:23984533-23984552 None:intergenic 15.0%
!! GATAATATAATATGATTCAA+TGG + chr1_1:23984612-23984631 Msa0014960:intron 15.0%
!!! TTTTTCTAATTTCTATAACA+CGG + chr1_1:23984728-23984747 Msa0014960:intron 15.0%
!!! AAATATATCACTTAGTTTTT+GGG - chr1_1:23985293-23985312 None:intergenic 15.0%
!!! AAAATATATCACTTAGTTTT+TGG - chr1_1:23985294-23985313 None:intergenic 15.0%
!!! TCTCTTAATATATTTTTGTA+TGG + chr1_1:23986358-23986377 Msa0014960:three_prime_UTR 15.0%
!!! TTTTAGAAATGAAAACATAA+TGG - chr1_1:23986587-23986606 None:intergenic 15.0%
!!! TTAAACTGAAAGTGTAAATA+TGG + chr1_1:23983026-23983045 Msa0014960:intron 20.0%
!! ATATGGATTCTAATCAATTT+AGG + chr1_1:23983043-23983062 Msa0014960:intron 20.0%
!! TATGGATTCTAATCAATTTA+GGG + chr1_1:23983044-23983063 Msa0014960:intron 20.0%
!!! TTTTGAGTTCTTTCAAATTA+GGG - chr1_1:23983190-23983209 None:intergenic 20.0%
!!! TTTTTGAGTTCTTTCAAATT+AGG - chr1_1:23983191-23983210 None:intergenic 20.0%
!!! AACTCAAAAAAAGTATTTGA+AGG + chr1_1:23983201-23983220 Msa0014960:intron 20.0%
!!! ACTCAAAAAAAGTATTTGAA+GGG + chr1_1:23983202-23983221 Msa0014960:intron 20.0%
!! GTTGTATAACAATATAGATT+GGG - chr1_1:23983247-23983266 None:intergenic 20.0%
!! TGTTGTATAACAATATAGAT+TGG - chr1_1:23983248-23983267 None:intergenic 20.0%
!!! ACTGAATCTTTTAAAAAAGA+TGG + chr1_1:23983493-23983512 Msa0014960:intron 20.0%
!! GAGTATCTAAATTTAGATAT+AGG + chr1_1:23983850-23983869 Msa0014960:intron 20.0%
!!! CAAACTCTAGAAATTTATTT+AGG + chr1_1:23984008-23984027 Msa0014960:intron 20.0%
!! GTAAATTCTAAATTGATTGA+TGG + chr1_1:23984053-23984072 Msa0014960:intron 20.0%
!!! ATATTTTTCCTCAAAATTGA+AGG - chr1_1:23984113-23984132 None:intergenic 20.0%
!!! CTTAATTGTTATCTCTTTTT+TGG + chr1_1:23984175-23984194 Msa0014960:intron 20.0%
!!! TAATTGTTATCTCTTTTTTG+GGG + chr1_1:23984177-23984196 Msa0014960:intron 20.0%
!! TTAACTATTGAAGTGAATTT+CGG + chr1_1:23984331-23984350 Msa0014960:intron 20.0%
!!! TGTTGATTTTGATAGTTAAA+TGG + chr1_1:23984406-23984425 Msa0014960:intron 20.0%
!! ACAAAACTTCAAATATTCAT+AGG - chr1_1:23984577-23984596 None:intergenic 20.0%
!! ATATAATATGATTCAATGGT+TGG + chr1_1:23984616-23984635 Msa0014960:intron 20.0%
!!! AAATCTAAAAGTATACAACT+AGG - chr1_1:23984789-23984808 None:intergenic 20.0%
!! TTAGTTTATTGAACAATACT+AGG - chr1_1:23984956-23984975 None:intergenic 20.0%
!! AATTAATTTAATAGTCAAGC+TGG + chr1_1:23985256-23985275 Msa0014960:intron 20.0%
!!! AATATATCACTTAGTTTTTG+GGG - chr1_1:23985292-23985311 None:intergenic 20.0%
!!! TAAGTGATATATTTTGATTG+AGG + chr1_1:23985299-23985318 Msa0014960:intron 20.0%
!!! AATCAAATCATTTGTTAGTA+CGG - chr1_1:23985424-23985443 None:intergenic 20.0%
!!! TTTAATTTAGTGCAAAACAA+AGG - chr1_1:23985597-23985616 None:intergenic 20.0%
!!! TTTGTTTTGCACTAAATTAA+AGG + chr1_1:23985596-23985615 Msa0014960:intron 20.0%
!!! AGAAAATTCAATTTTCAGTT+TGG - chr1_1:23985997-23986016 None:intergenic 20.0%
! CGTAGAAATCAATAAAAATG+CGG + chr1_1:23982125-23982144 Msa0014960:exon 25.0%
! GTAGAAATCAATAAAAATGC+GGG + chr1_1:23982126-23982145 Msa0014960:exon 25.0%
! AATAACTTCTCATCATGTTT+AGG - chr1_1:23982310-23982329 None:intergenic 25.0%
! GGATATTATTGATGCAAATT+CGG + chr1_1:23982574-23982593 Msa0014960:intron 25.0%
! AAAATTGGTTACAAAACTGA+TGG + chr1_1:23982643-23982662 Msa0014960:intron 25.0%
!!! TCACATTGTTGATTTTCTAA+TGG - chr1_1:23982683-23982702 None:intergenic 25.0%
!!! ACCTTGAATTTTTTTGGTTT+CGG - chr1_1:23982771-23982790 None:intergenic 25.0%
! ACCAAAAAAATTCAAGGTTT+CGG + chr1_1:23982773-23982792 Msa0014960:intron 25.0%
!! TTTGAGTTCTTTCAAATTAG+GGG - chr1_1:23983189-23983208 None:intergenic 25.0%
! AGAAGCAATGATATAAGAAA+AGG - chr1_1:23983588-23983607 None:intergenic 25.0%
! TCTAGATACAATCATCAAAT+AGG - chr1_1:23983754-23983773 None:intergenic 25.0%
! GTATCTAGATAGAAAAGTAA+AGG + chr1_1:23983765-23983784 Msa0014960:intron 25.0%
!! AGATAGAAAAGTAAAGGTAT+AGG + chr1_1:23983771-23983790 Msa0014960:intron 25.0%
! GCAAATTCATAAGATAGTAA+AGG - chr1_1:23984079-23984098 None:intergenic 25.0%
! AAAAATATGCTTACCTAACA+TGG - chr1_1:23984313-23984332 None:intergenic 25.0%
! ATATACAATGTTAACCACAA+AGG - chr1_1:23984367-23984386 None:intergenic 25.0%
! TTGTATATACATGCATAAAG+AGG + chr1_1:23984379-23984398 Msa0014960:intron 25.0%
! TGTATATACATGCATAAAGA+GGG + chr1_1:23984380-23984399 Msa0014960:intron 25.0%
! ATCATAATTCGGAATATACA+TGG - chr1_1:23984502-23984521 None:intergenic 25.0%
! AGGTTGTAACTATCATAATT+CGG - chr1_1:23984513-23984532 None:intergenic 25.0%
! AAGTTTATTCTTGAAGTGAT+AGG - chr1_1:23984844-23984863 None:intergenic 25.0%
!! ATGATTTGATTTCAATAGCT+AGG + chr1_1:23985433-23985452 Msa0014960:intron 25.0%
! ATCCATTTGCATCTTTATTA+AGG + chr1_1:23985554-23985573 Msa0014960:intron 25.0%
! TTCCTTAATAAAGATGCAAA+TGG - chr1_1:23985559-23985578 None:intergenic 25.0%
! AAAACAAAGGTCTTTCAAAA+AGG - chr1_1:23985584-23985603 None:intergenic 25.0%
! TATATCTACAGATGTTTCAA+TGG - chr1_1:23985651-23985670 None:intergenic 25.0%
!! ATATAACATTTAAAGCACAG+TGG + chr1_1:23985668-23985687 Msa0014960:intron 25.0%
!!! AAAAGTGCCATTAAAATTGT+TGG + chr1_1:23985740-23985759 Msa0014960:intron 25.0%
!! AAAGTGCCATTAAAATTGTT+GGG + chr1_1:23985741-23985760 Msa0014960:intron 25.0%
!! AACTTTCCCAACAATTTTAA+TGG - chr1_1:23985750-23985769 None:intergenic 25.0%
!! TTCAATTTTCAGTTTGGATT+TGG - chr1_1:23985991-23986010 None:intergenic 25.0%
! ACAACTATCAATGTAAAACA+TGG - chr1_1:23986078-23986097 None:intergenic 25.0%
!! TTTACATTGATAGTTGTGTT+TGG + chr1_1:23986081-23986100 Msa0014960:intron 25.0%
!! AAATTGTCAATTGTGTTGTT+TGG - chr1_1:23986494-23986513 None:intergenic 25.0%
!! AACATAATGGAGAAGTAAAT+GGG - chr1_1:23986574-23986593 None:intergenic 25.0%
!! AAACATAATGGAGAAGTAAA+TGG - chr1_1:23986575-23986594 None:intergenic 25.0%
ACAATTCATCGAACATGTAA+GGG - chr1_1:23982465-23982484 None:intergenic 30.0%
! AGTGAAATTGTTAGTCTGTA+AGG + chr1_1:23982541-23982560 Msa0014960:intron 30.0%
! GTGAAATTGTTAGTCTGTAA+GGG + chr1_1:23982542-23982561 Msa0014960:intron 30.0%
TTATTGATGCAAATTCGGTT+AGG + chr1_1:23982579-23982598 Msa0014960:intron 30.0%
TATAAGCGACGAGATAAAAT+TGG + chr1_1:23982628-23982647 Msa0014960:intron 30.0%
ACCGAAACCAAAAAAATTCA+AGG + chr1_1:23982767-23982786 Msa0014960:intron 30.0%
CCAAAAAAATTCAAGGTTTC+GGG + chr1_1:23982774-23982793 Msa0014960:intron 30.0%
CAACACTAGTGTTTATATAG+TGG - chr1_1:23982909-23982928 None:intergenic 30.0%
TATAATTCTGTTGGAACACT+AGG - chr1_1:23982990-23983009 None:intergenic 30.0%
AGTGTTCCAACAGAATTATA+AGG + chr1_1:23982990-23983009 Msa0014960:intron 30.0%
! TAATCAATTTAGGGTCTGTT+TGG + chr1_1:23983053-23983072 Msa0014960:intron 30.0%
TGAAAAAGAAAAGGATGAAG+CGG + chr1_1:23983101-23983120 Msa0014960:intron 30.0%
! AGAAAAGTAAAGGTATAGGT+AGG + chr1_1:23983775-23983794 Msa0014960:intron 30.0%
TCTACAAAATGTTACTGTAC+TGG + chr1_1:23984656-23984675 Msa0014960:intron 30.0%
!!! TTACTGTACTGGTTATTTTC+AGG + chr1_1:23984667-23984686 Msa0014960:intron 30.0%
!!! TACTGTACTGGTTATTTTCA+GGG + chr1_1:23984668-23984687 Msa0014960:intron 30.0%
CATTAAGTTTCTCTGTTTAG+AGG - chr1_1:23984914-23984933 None:intergenic 30.0%
! TCTGTGCATTATCTGTTTTA+AGG - chr1_1:23985016-23985035 None:intergenic 30.0%
CTGTATGAATATTGCATTGA+TGG - chr1_1:23985052-23985071 None:intergenic 30.0%
! TCCAAACTAATATTGACTGT+GGG - chr1_1:23985112-23985131 None:intergenic 30.0%
!!! TATATTTTGATTGAGGAGCA+TGG + chr1_1:23985306-23985325 Msa0014960:intron 30.0%
TACATGGAATAGTGACATTA+CGG + chr1_1:23985503-23985522 Msa0014960:intron 30.0%
CTTGTGATGAGATTATGAAA+TGG - chr1_1:23985622-23985641 None:intergenic 30.0%
TGTATGAGAGACTTAATGTT+TGG + chr1_1:23985801-23985820 Msa0014960:intron 30.0%
AACCAACTAGATAATAAGCT+CGG + chr1_1:23985832-23985851 Msa0014960:intron 30.0%
! AACAGTTAGCTTAATGTGTT+TGG + chr1_1:23985873-23985892 Msa0014960:intron 30.0%
! GAGGATAACTTTTATCAATG+AGG - chr1_1:23986036-23986055 None:intergenic 30.0%
!! TGATTGATAGCTCTAATTTG+TGG + chr1_1:23986123-23986142 Msa0014960:intron 30.0%
! TATCTTTTATCATTTCCCGA+CGG - chr1_1:23986302-23986321 None:intergenic 30.0%
AGTATTCCAATTCACTTTCT+GGG + chr1_1:23986446-23986465 Msa0014960:three_prime_UTR 30.0%
! TTCTTTGTTTACCAACGTGT+TGG - chr1_1:23982037-23982056 None:intergenic 35.0%
!! GTGGATTTGTTGTTACTGTA+AGG - chr1_1:23982217-23982236 None:intergenic 35.0%
GATATGATTACGAAAGAGGA+CGG - chr1_1:23982239-23982258 None:intergenic 35.0%
AGGAGATATGATTACGAAAG+AGG - chr1_1:23982243-23982262 None:intergenic 35.0%
CATTCAATCTATGCAGCAAA+AGG + chr1_1:23982411-23982430 Msa0014960:CDS 35.0%
CAATTCATCGAACATGTAAG+GGG - chr1_1:23982464-23982483 None:intergenic 35.0%
GACAATTCATCGAACATGTA+AGG - chr1_1:23982466-23982485 None:intergenic 35.0%
! AATTGTTAGTCTGTAAGGGT+TGG + chr1_1:23982546-23982565 Msa0014960:intron 35.0%
! ATTGTTAGTCTGTAAGGGTT+GGG + chr1_1:23982547-23982566 Msa0014960:intron 35.0%
ATGTGATCTCGCCTATTTAA+AGG + chr1_1:23982697-23982716 Msa0014960:intron 35.0%
!!! CCCGAAACCTTGAATTTTTT+TGG - chr1_1:23982777-23982796 None:intergenic 35.0%
! TGGTACACACTTTTGCAAAA+GGG - chr1_1:23982866-23982885 None:intergenic 35.0%
! AGTGTTTATATAGTGGAGGT+AGG - chr1_1:23982902-23982921 None:intergenic 35.0%
CACTAGTGTTTATATAGTGG+AGG - chr1_1:23982906-23982925 None:intergenic 35.0%
GTTCCAACAGAATTATAAGG+AGG + chr1_1:23982993-23983012 Msa0014960:intron 35.0%
! AGAATTATAAGGAGGCACAA+TGG + chr1_1:23983001-23983020 Msa0014960:intron 35.0%
GTCTGTTTGGAAGTTTATGT+GGG + chr1_1:23983066-23983085 Msa0014960:intron 35.0%
TCTGTTTGGAAGTTTATGTG+GGG + chr1_1:23983067-23983086 Msa0014960:intron 35.0%
CTTCTAACACTACTTCTGTA+GGG - chr1_1:23983619-23983638 None:intergenic 35.0%
TCTTCTAACACTACTTCTGT+AGG - chr1_1:23983620-23983639 None:intergenic 35.0%
ATAGGTAGGAGCAATGATTT+AGG + chr1_1:23983789-23983808 Msa0014960:intron 35.0%
CTCAAAATTGAAGGAAGATC+TGG - chr1_1:23984104-23984123 None:intergenic 35.0%
! CAGATCTTCCTTCAATTTTG+AGG + chr1_1:23984102-23984121 Msa0014960:intron 35.0%
!! CGACTTGCTCTAAAAGATAA+AGG + chr1_1:23984235-23984254 Msa0014960:intron 35.0%
! TCATCAAAGCATCAAACTCT+AGG - chr1_1:23984815-23984834 None:intergenic 35.0%
AAAAGAGAGAAAGAAACCGT+TGG + chr1_1:23984872-23984891 Msa0014960:intron 35.0%
! ACTAATATTGACTGTGGGTA+AGG - chr1_1:23985107-23985126 None:intergenic 35.0%
ACCCACAGTCAATATTAGTT+TGG + chr1_1:23985108-23985127 Msa0014960:intron 35.0%
! CTCCAAACTAATATTGACTG+TGG - chr1_1:23985113-23985132 None:intergenic 35.0%
AAACACCTAAATTCCCTGTT+TGG + chr1_1:23985148-23985167 Msa0014960:intron 35.0%
AACACCTAAATTCCCTGTTT+GGG + chr1_1:23985149-23985168 Msa0014960:intron 35.0%
CAAGTGTGATGTAATGTACA+TGG + chr1_1:23985487-23985506 Msa0014960:intron 35.0%
! AACATTTAAAGCACAGTGGA+TGG + chr1_1:23985672-23985691 Msa0014960:intron 35.0%
! ACATTTAAAGCACAGTGGAT+GGG + chr1_1:23985673-23985692 Msa0014960:intron 35.0%
!! GCTAACTGTTATTTCATGAG+AGG - chr1_1:23985863-23985882 None:intergenic 35.0%
GAATTGCATATGTAGCTGAA+TGG - chr1_1:23985924-23985943 None:intergenic 35.0%
ATTCTTCTCCAAAGTTTGAG+AGG + chr1_1:23985940-23985959 Msa0014960:intron 35.0%
CTCAATTTCCTCTCAAACTT+TGG - chr1_1:23985951-23985970 None:intergenic 35.0%
GATGGTCTATAAAGCCATAT+GGG + chr1_1:23986213-23986232 Msa0014960:CDS 35.0%
CAGTATTCCAATTCACTTTC+TGG + chr1_1:23986445-23986464 Msa0014960:three_prime_UTR 35.0%
ACTGTAAGGTCGAACCAAAA+CGG - chr1_1:23982203-23982222 None:intergenic 40.0%
! TAGTTTGTGAAGTGGATCTG+AGG - chr1_1:23982267-23982286 None:intergenic 40.0%
! GAGAGAAGTAGTTTGTGAAG+TGG - chr1_1:23982275-23982294 None:intergenic 40.0%
GCTACTAATGTAAACGATGC+TGG + chr1_1:23982370-23982389 Msa0014960:CDS 40.0%
TGCTGCATAGATTGAATGAG+AGG - chr1_1:23982409-23982428 None:intergenic 40.0%
ATGCAAATTCGGTTAGGTAG+AGG + chr1_1:23982585-23982604 Msa0014960:intron 40.0%
! GTGGTACACACTTTTGCAAA+AGG - chr1_1:23982867-23982886 None:intergenic 40.0%
CTCTTCTATGTGAGACTTGT+AGG + chr1_1:23982937-23982956 Msa0014960:intron 40.0%
GTGCCTCCTTATAATTCTGT+TGG - chr1_1:23982999-23983018 None:intergenic 40.0%
GGTCTGTTTGGAAGTTTATG+TGG + chr1_1:23983065-23983084 Msa0014960:intron 40.0%
TTTGGAAGTTTATGTGGGGA+GGG + chr1_1:23983071-23983090 Msa0014960:intron 40.0%
CGGAAGTAATAGAGGATTTC+AGG + chr1_1:23983121-23983140 Msa0014960:intron 40.0%
AATAGAGGATTTCAGGAGCT+AGG + chr1_1:23983128-23983147 Msa0014960:intron 40.0%
ATAGAGGATTTCAGGAGCTA+GGG + chr1_1:23983129-23983148 Msa0014960:intron 40.0%
TCTCTAGCGTTGTGTGATTT+AGG - chr1_1:23983297-23983316 None:intergenic 40.0%
!! TTAGCTTTGCTATGCATAGC+TGG - chr1_1:23983387-23983406 None:intergenic 40.0%
! TTAATTCCAGGTTGGGAGAT+TGG - chr1_1:23983554-23983573 None:intergenic 40.0%
GAGCAGTTTAATTCCAGGTT+GGG - chr1_1:23983561-23983580 None:intergenic 40.0%
AGAGCAGTTTAATTCCAGGT+TGG - chr1_1:23983562-23983581 None:intergenic 40.0%
GAGAAGAGCAGTTTAATTCC+AGG - chr1_1:23983566-23983585 None:intergenic 40.0%
GAGTATAAGAGCAGAAACAG+AGG + chr1_1:23983638-23983657 Msa0014960:intron 40.0%
TGCAGAAACAGTCTCTGTAA+AGG + chr1_1:23984268-23984287 Msa0014960:CDS 40.0%
GTCTCTGTAAAGGATGCTTA+TGG + chr1_1:23984278-23984297 Msa0014960:CDS 40.0%
GTAAAGGATGCTTATGGTGA+CGG + chr1_1:23984284-23984303 Msa0014960:CDS 40.0%
! TCGGTTTTTCGTTACCTTTG+TGG + chr1_1:23984350-23984369 Msa0014960:intron 40.0%
!! ATTTTCAGGGCCACTTTCTA+TGG + chr1_1:23984681-23984700 Msa0014960:intron 40.0%
ATACTTCATCCTCCAACCAA+CGG - chr1_1:23984891-23984910 None:intergenic 40.0%
AATGACAGCAAAGTGATACG+AGG + chr1_1:23984930-23984949 Msa0014960:intron 40.0%
AGAAAAGTCCTTGAAGAAGC+AGG + chr1_1:23985070-23985089 Msa0014960:intron 40.0%
! ATATTGACTGTGGGTAAGGA+GGG - chr1_1:23985103-23985122 None:intergenic 40.0%
! AATATTGACTGTGGGTAAGG+AGG - chr1_1:23985104-23985123 None:intergenic 40.0%
! TGCCATGTGCATTTGAAGTA+GGG + chr1_1:23985172-23985191 Msa0014960:intron 40.0%
! ATTTGAAGTAGGGTCACCAT+GGG + chr1_1:23985182-23985201 Msa0014960:intron 40.0%
GTGCAAGCAGTCTTTATAGA+TGG + chr1_1:23985328-23985347 Msa0014960:intron 40.0%
CAATAGCTAGGCTTGAATGT+TGG + chr1_1:23985445-23985464 Msa0014960:intron 40.0%
TACATCACACTTGTGACTTC+AGG - chr1_1:23985480-23985499 None:intergenic 40.0%
TTACGGCGTGATTGAACAAA+TGG + chr1_1:23985520-23985539 Msa0014960:intron 40.0%
CACCGAGCTTATTATCTAGT+TGG - chr1_1:23985837-23985856 None:intergenic 40.0%
GGATGGTCTATAAAGCCATA+TGG + chr1_1:23986212-23986231 Msa0014960:CDS 40.0%
TGCATGTGAACACATTGCAA+TGG - chr1_1:23986419-23986438 None:intergenic 40.0%
CATTATCCAGCAATGTTCTG+CGG + chr1_1:23986528-23986547 Msa0014960:three_prime_UTR 40.0%
AAGAGCTTTGCGGAGTAAAG+TGG - chr1_1:23982179-23982198 None:intergenic 45.0%
CTGTAAGGTCGAACCAAAAC+GGG - chr1_1:23982202-23982221 None:intergenic 45.0%
ATGATTACGAAAGAGGACGG+TGG - chr1_1:23982236-23982255 None:intergenic 45.0%
TTGTGAAGTGGATCTGAGGA+AGG - chr1_1:23982263-23982282 None:intergenic 45.0%
GCAGCGTTGCTCCTTTAAAT+AGG - chr1_1:23982711-23982730 None:intergenic 45.0%
TGCCAAGAGTTGACTAATGG+AGG + chr1_1:23982728-23982747 Msa0014960:intron 45.0%
GCCAAGAGTTGACTAATGGA+GGG + chr1_1:23982729-23982748 Msa0014960:intron 45.0%
ACCCTCCATTAGTCAACTCT+TGG - chr1_1:23982733-23982752 None:intergenic 45.0%
! AAAAGTGTGTACCACACCCT+CGG + chr1_1:23982872-23982891 Msa0014960:intron 45.0%
GTTTGGAAGTTTATGTGGGG+AGG + chr1_1:23983070-23983089 Msa0014960:intron 45.0%
TTGGAAGTTTATGTGGGGAG+GGG + chr1_1:23983072-23983091 Msa0014960:intron 45.0%
GGGAGGGCTTGAAAAAGAAA+AGG + chr1_1:23983092-23983111 Msa0014960:intron 45.0%
GGATGAAGCGGAAGTAATAG+AGG + chr1_1:23983113-23983132 Msa0014960:intron 45.0%
GATTTCAGGAGCTAGGGTTT+GGG + chr1_1:23983135-23983154 Msa0014960:intron 45.0%
ATTTCAGGAGCTAGGGTTTG+GGG + chr1_1:23983136-23983155 Msa0014960:intron 45.0%
TTTAGGTAGCTGGTGGGATA+AGG - chr1_1:23983280-23983299 None:intergenic 45.0%
GTGTGATTTAGGTAGCTGGT+GGG - chr1_1:23983286-23983305 None:intergenic 45.0%
TGTGTGATTTAGGTAGCTGG+TGG - chr1_1:23983287-23983306 None:intergenic 45.0%
CGTTGTGTGATTTAGGTAGC+TGG - chr1_1:23983290-23983309 None:intergenic 45.0%
AGTTGTACGCTGTTGTGAGT+AGG - chr1_1:23984157-23984176 None:intergenic 45.0%
CTTCAGTCAGCCATAGAAAG+TGG - chr1_1:23984694-23984713 None:intergenic 45.0%
CACTTTCTATGGCTGACTGA+AGG + chr1_1:23984692-23984711 Msa0014960:intron 45.0%
GAGAGAAAGAAACCGTTGGT+TGG + chr1_1:23984876-23984895 Msa0014960:intron 45.0%
! AGAAAGAAACCGTTGGTTGG+AGG + chr1_1:23984879-23984898 Msa0014960:intron 45.0%
GAATATCGCCTGCTTCTTCA+AGG - chr1_1:23985081-23985100 None:intergenic 45.0%
! GTGCCATGTGCATTTGAAGT+AGG + chr1_1:23985171-23985190 Msa0014960:intron 45.0%
GACCCTACTTCAAATGCACA+TGG - chr1_1:23985177-23985196 None:intergenic 45.0%
! CATTTGAAGTAGGGTCACCA+TGG + chr1_1:23985181-23985200 Msa0014960:intron 45.0%
TTGAGTTTGAGCTTGACCCA+TGG - chr1_1:23985201-23985220 None:intergenic 45.0%
GCTGAATGGTGAGGAATAAG+CGG - chr1_1:23985910-23985929 None:intergenic 45.0%
GCATATGTAGCTGAATGGTG+AGG - chr1_1:23985919-23985938 None:intergenic 45.0%
AAGTTATCCTCGACACCTTG+AGG + chr1_1:23986045-23986064 Msa0014960:intron 45.0%
AAACATGGAACAGTGCCTCA+AGG - chr1_1:23986063-23986082 None:intergenic 45.0%
AATCAGCCGTGAATAGGCAA+AGG + chr1_1:23986191-23986210 Msa0014960:CDS 45.0%
GACCATCCTTTGCCTATTCA+CGG - chr1_1:23986200-23986219 None:intergenic 45.0%
GGTCTATAAAGCCATATGGG+AGG + chr1_1:23986216-23986235 Msa0014960:CDS 45.0%
!! ACTCTGAAGTTCCTCCCATA+TGG - chr1_1:23986230-23986249 None:intergenic 45.0%
GCAACTCCCAGAAAGTGAAT+TGG - chr1_1:23986455-23986474 None:intergenic 45.0%
AACAAACCGCAGAACATTGC+TGG - chr1_1:23986537-23986556 None:intergenic 45.0%
! TTCTACGCTGTGTTGCTGCT+GGG - chr1_1:23982112-23982131 None:intergenic 50.0%
! TTTCTACGCTGTGTTGCTGC+TGG - chr1_1:23982113-23982132 None:intergenic 50.0%
GCTTTGCGGAGTAAAGTGGT+GGG - chr1_1:23982175-23982194 None:intergenic 50.0%
AGCTTTGCGGAGTAAAGTGG+TGG - chr1_1:23982176-23982195 None:intergenic 50.0%
CCAAAACGGGAAGAGCTTTG+CGG - chr1_1:23982189-23982208 None:intergenic 50.0%
TAGTCTGTAAGGGTTGGGAC+TGG + chr1_1:23982552-23982571 Msa0014960:intron 50.0%
AGTCTGTAAGGGTTGGGACT+GGG + chr1_1:23982553-23982572 Msa0014960:intron 50.0%
GCTTATATGAAGAGCTCCCC+TGG - chr1_1:23982615-23982634 None:intergenic 50.0%
CGCTGCCAAGAGTTGACTAA+TGG + chr1_1:23982725-23982744 Msa0014960:intron 50.0%
AAAGTGTGTACCACACCCTC+GGG + chr1_1:23982873-23982892 Msa0014960:intron 50.0%
AAGTTTATGTGGGGAGGGGA+GGG + chr1_1:23983076-23983095 Msa0014960:intron 50.0%
GGATTTCAGGAGCTAGGGTT+TGG + chr1_1:23983134-23983153 Msa0014960:intron 50.0%
TTTCAGGAGCTAGGGTTTGG+GGG + chr1_1:23983137-23983156 Msa0014960:intron 50.0%
! AAGTTTTACGTTGACCGCCG+AGG + chr1_1:23983324-23983343 Msa0014960:intron 50.0%
GAGAGGGTTGTGTTAGACCT+CGG - chr1_1:23983344-23983363 None:intergenic 50.0%
CACAACCCTCTCCTGTTAAC+CGG + chr1_1:23983352-23983371 Msa0014960:intron 50.0%
ACAACCCTCTCCTGTTAACC+GGG + chr1_1:23983353-23983372 Msa0014960:intron 50.0%
ATTGGAGGGAGGGAATTGGA+GGG - chr1_1:23983536-23983555 None:intergenic 50.0%
! TTCCAGGTTGGGAGATTGGA+GGG - chr1_1:23983550-23983569 None:intergenic 50.0%
! ATTCCAGGTTGGGAGATTGG+AGG - chr1_1:23983551-23983570 None:intergenic 50.0%
GGCACCCAAACAGGGAATTT+AGG - chr1_1:23985156-23985175 None:intergenic 50.0%
ATGCACATGGCACCCAAACA+GGG - chr1_1:23985164-23985183 None:intergenic 50.0%
AATGCACATGGCACCCAAAC+AGG - chr1_1:23985165-23985184 None:intergenic 50.0%
AGCACAGTGGATGGGATGAA+AGG + chr1_1:23985681-23985700 Msa0014960:intron 50.0%
! TGTTGTATCGACAGCCTTCG+AGG + chr1_1:23986165-23986184 Msa0014960:CDS 50.0%
! GTTGTATCGACAGCCTTCGA+GGG + chr1_1:23986166-23986185 Msa0014960:CDS 50.0%
AGGGACAATCAGCCGTGAAT+AGG + chr1_1:23986185-23986204 Msa0014960:CDS 50.0%
AGCCGTGAATAGGCAAAGGA+TGG + chr1_1:23986195-23986214 Msa0014960:CDS 50.0%
! CCGCAAAGCTCTTCCCGTTT+TGG + chr1_1:23982186-23982205 Msa0014960:CDS 55.0%
GGTTAGGTAGAGGTCAGCCA+GGG + chr1_1:23982595-23982614 Msa0014960:intron 55.0%
GTTAGGTAGAGGTCAGCCAG+GGG + chr1_1:23982596-23982615 Msa0014960:intron 55.0%
TTCGCGCGTCATTCGAGCTT+GGG - chr1_1:23982817-23982836 None:intergenic 55.0%
ATTCGCGCGTCATTCGAGCT+TGG - chr1_1:23982818-23982837 None:intergenic 55.0%
AAGCTCGAATGACGCGCGAA+TGG + chr1_1:23982817-23982836 Msa0014960:intron 55.0%
GAAGTTTATGTGGGGAGGGG+AGG + chr1_1:23983075-23983094 Msa0014960:intron 55.0%
GTAGCTGGTGGGATAAGGCT+TGG - chr1_1:23983275-23983294 None:intergenic 55.0%
AGGGTTGTGTTAGACCTCGG+CGG - chr1_1:23983341-23983360 None:intergenic 55.0%
AAGGCCCGGTTAACAGGAGA+GGG - chr1_1:23983360-23983379 None:intergenic 55.0%
TCTCCTGTTAACCGGGCCTT+GGG + chr1_1:23983360-23983379 Msa0014960:intron 55.0%
GCTATGCATAGCTGGTCCCA+AGG - chr1_1:23983379-23983398 None:intergenic 55.0%
GATTGGAGGGAGGGAATTGG+AGG - chr1_1:23983537-23983556 None:intergenic 55.0%
GGAGATTGGAGGGAGGGAAT+TGG - chr1_1:23983540-23983559 None:intergenic 55.0%
AGGTTGGGAGATTGGAGGGA+GGG - chr1_1:23983546-23983565 None:intergenic 55.0%
!! ATGGTGACGGACGCCATGTT+AGG + chr1_1:23984297-23984316 Msa0014960:CDS 55.0%
!! AACAGTGCCTCAAGGTGTCG+AGG - chr1_1:23986055-23986074 None:intergenic 55.0%
! GGCTGCTTCAGCAGGAGTTT+TGG - chr1_1:23986281-23986300 None:intergenic 55.0%
! ACGCTGTGTTGCTGCTGGGA+GGG - chr1_1:23982108-23982127 None:intergenic 60.0%
! TACGCTGTGTTGCTGCTGGG+AGG - chr1_1:23982109-23982128 None:intergenic 60.0%
CGGTTAGGTAGAGGTCAGCC+AGG + chr1_1:23982594-23982613 Msa0014960:intron 60.0%
AGTGGAGGTAGGACTCCCGA+GGG - chr1_1:23982891-23982910 None:intergenic 60.0%
TAGTGGAGGTAGGACTCCCG+AGG - chr1_1:23982892-23982911 None:intergenic 60.0%
CAAGGCCCGGTTAACAGGAG+AGG - chr1_1:23983361-23983380 None:intergenic 60.0%
CTCTCCTGTTAACCGGGCCT+TGG + chr1_1:23983359-23983378 Msa0014960:intron 60.0%
! CAGGTTGGGAGATTGGAGGG+AGG - chr1_1:23983547-23983566 None:intergenic 60.0%
CTCCCTCCAATCTCCCAACC+TGG + chr1_1:23983545-23983564 Msa0014960:intron 60.0%
CACGGCTGATTGTCCCTCGA+AGG - chr1_1:23986182-23986201 None:intergenic 60.0%
ACTCCTGCTGAAGCAGCCGT+CGG + chr1_1:23986283-23986302 Msa0014960:CDS 60.0%
! CGCTGTGTTGCTGCTGGGAG+GGG - chr1_1:23982107-23982126 None:intergenic 65.0%
AGGTAGGACTCCCGAGGGTG+TGG - chr1_1:23982886-23982905 None:intergenic 65.0%
GGTCCCAAGGCCCGGTTAAC+AGG - chr1_1:23983366-23983385 None:intergenic 65.0%
GCATAGCTGGTCCCAAGGCC+CGG - chr1_1:23983374-23983393 None:intergenic 65.0%
CTCCTGCTGAAGCAGCCGTC+GGG + chr1_1:23986284-23986303 Msa0014960:CDS 65.0%
TTCCCGACGGCTGCTTCAGC+AGG - chr1_1:23986289-23986308 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 23982029 23986626 23982029 ID=Msa0014960;Name=Msa0014960
chr1_1 mRNA 23982029 23986626 23982029 ID=Msa0014960-mRNA-1;Parent=Msa0014960;Name=Msa0014960-mRNA-1;_AED=0.00;_eAED=0.00;_QI=113|1|1|1|1|1|3|314|170
chr1_1 exon 23982029 23982432 23982029 ID=Msa0014960-mRNA-1:exon:8267;Parent=Msa0014960-mRNA-1
chr1_1 exon 23984251 23984318 23984251 ID=Msa0014960-mRNA-1:exon:8268;Parent=Msa0014960-mRNA-1
chr1_1 exon 23986159 23986626 23986159 ID=Msa0014960-mRNA-1:exon:8269;Parent=Msa0014960-mRNA-1
chr1_1 five_prime_UTR 23982029 23982141 23982029 ID=Msa0014960-mRNA-1:five_prime_utr;Parent=Msa0014960-mRNA-1
chr1_1 CDS 23982142 23982432 23982142 ID=Msa0014960-mRNA-1:cds;Parent=Msa0014960-mRNA-1
chr1_1 CDS 23984251 23984318 23984251 ID=Msa0014960-mRNA-1:cds;Parent=Msa0014960-mRNA-1
chr1_1 CDS 23986159 23986312 23986159 ID=Msa0014960-mRNA-1:cds;Parent=Msa0014960-mRNA-1
chr1_1 three_prime_UTR 23986313 23986626 23986313 ID=Msa0014960-mRNA-1:three_prime_utr;Parent=Msa0014960-mRNA-1
Gene Sequence

>Msa0014960

ATGCGGGCACACGTTTTCTCACTTTCAGCACCCACCACTTTACTCCGCAAAGCTCTTCCCGTTTTGGTTCGACCTTACAGTAACAACAAATCCACCGTCCTCTTTCGTAATCATATCTCCTTCCTCAGATCCACTTCACAAACTACTTCTCTCTTTCGCGATATTCCTAAACATGATGAGAAGTTATTGTTCATCTCTGTTACTTCTATTCGCAAGTTTACTTCACGTGCTACTAATGTAAACGATGCTGGTTCTATTGATTTGCCTCTCATTCAATCTATGCAGCAAAAGATAAAGGAACAACTCAATGCAGAAACAGTCTCTGTAAAGGATGCTTATGGTGACGGACGCCATGTTAGCATTGATGTTGTATCGACAGCCTTCGAGGGACAATCAGCCGTGAATAGGCAAAGGATGGTCTATAAAGCCATATGGGAGGAACTTCAGAGTGCAGTTCATGCAGTTGATCAGATGACGACCAAAACTCCTGCTGAAGCAGCCGTCGGGAAATGA

Protein sequence

>Msa0014960

MRAHVFSLSAPTTLLRKALPVLVRPYSNNKSTVLFRNHISFLRSTSQTTSLFRDIPKHDEKLLFISVTSIRKFTSRATNVNDAGSIDLPLIQSMQQKIKEQLNAETVSVKDAYGDGRHVSIDVVSTAFEGQSAVNRQRMVYKAIWEELQSAVHAVDQMTTKTPAEAAVGK*