AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0750940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0750940 MtrunA17_Chr5g0395171 94.479 163 8 1 1 162 1 163 2.82e-109 308
Msa0750940 MtrunA17_Chr5g0407361 43.564 101 51 3 50 145 51 150 9.89e-18 75.5
Msa0750940 MtrunA17_Chr3g0144161 42.857 98 52 3 61 156 68 163 4.25e-16 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0750940 AT5G16660.1 53.459 159 69 4 6 160 8 165 1.27e-50 160
Msa0750940 AT5G16660.2 54.375 160 66 6 6 161 8 164 4.29e-46 148
Msa0750940 AT3G02900.1 48.466 163 68 5 6 161 7 160 2.47e-41 136
Msa0750940 AT3G02900.2 51.163 129 54 3 40 161 40 166 8.73e-37 125
Msa0750940 AT1G42960.1 41.228 114 59 4 49 156 51 162 1.90e-19 80.5

Find 67 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGTTGCTGGCTTTCTTC+TGG 0.108341 5_2:-4503186 Msa0750940:CDS
GTCAACGATACATCGAAAAT+TGG 0.187441 5_2:-4501494 Msa0750940:three_prime_UTR
CTGCTAAATGAAGATGAATA+TGG 0.203723 5_2:-4501930 Msa0750940:CDS
CTTCAAATGCCTTCAAATTC+AGG 0.204641 5_2:+4501542 None:intergenic
TACTGTCCATGGAAATAAAA+TGG 0.263122 5_2:+4501389 None:intergenic
AGAGGTGGGGATTTGGTTGC+TGG 0.280443 5_2:-4503197 Msa0750940:CDS
TAAATCAATGTCACGCGATT+AGG 0.289541 5_2:-4504725 Msa0750940:five_prime_UTR
GTGTGTGTGTTTGTGGTTAT+CGG 0.291414 5_2:+4504664 None:intergenic
GACTGTCAACGTTTGTGTTT+TGG 0.294312 5_2:-4501298 Msa0750940:three_prime_UTR
AAAATATACAGTATGGATTA+TGG 0.296871 5_2:-4501366 Msa0750940:three_prime_UTR
TTGGTTGCTGGCTTTCTTCT+GGG 0.303767 5_2:-4503185 Msa0750940:CDS
AAGCTGCGAATGTTTGTTAC+AGG 0.313148 5_2:-4501115 Msa0750940:three_prime_UTR
CTGCACGAACGGGTGAAATA+AGG 0.322738 5_2:+4504099 None:intergenic
TGATAACAGAGGTGGGGATT+TGG 0.357687 5_2:-4503204 Msa0750940:CDS
AGCCCTTCGTCATAATAATA+AGG 0.364499 5_2:+4501885 None:intergenic
ATTCAGGATCACTTTCTAAA+GGG 0.373701 5_2:+4501558 None:intergenic
GCGCCATTATCGATTTCTTC+AGG 0.380646 5_2:-4504578 Msa0750940:intron
TATCAATGGCAGAATTTAGT+TGG 0.383082 5_2:+4501627 None:intergenic
AAAGCTGTCAAAATCTTTAG+TGG 0.399963 5_2:-4501413 Msa0750940:three_prime_UTR
GAAAGTGATCCTGAATTTGA+AGG 0.404369 5_2:-4501551 Msa0750940:CDS
TTGGCCTATCTTATCATTCA+AGG 0.409252 5_2:+4501646 None:intergenic
AAGCGTAATTCATCTGTGTT+TGG 0.421907 5_2:-4504173 Msa0750940:CDS
GGGTGAAATAAGGTTCCTTC+TGG 0.421994 5_2:+4504109 None:intergenic
AATTATAGCAATAGAGGGTC+TGG 0.424355 5_2:+4501249 None:intergenic
AATTCAGGATCACTTTCTAA+AGG 0.440983 5_2:+4501557 None:intergenic
ATAATAATAAGGTGGTCTTC+TGG 0.441088 5_2:+4501896 None:intergenic
TACCGTTGTTCTGCACGAAC+GGG 0.442801 5_2:+4504089 None:intergenic
CTTTGAACAGCAGCAAGCTT+AGG 0.449964 5_2:+4504149 None:intergenic
GTTTCTGAATGCAGAGGACC+AGG 0.463024 5_2:-4501673 Msa0750940:intron
TGCTAAATGAAGATGAATAT+GGG 0.463822 5_2:-4501929 Msa0750940:CDS
TTTCTTCATTCTCTCTCCCA+TGG 0.464488 5_2:-4504612 Msa0750940:exon
GTGTTGGTGCTGGATTGATA+TGG 0.467628 5_2:-4501438 Msa0750940:three_prime_UTR
TGACCTGAAGAAATCGATAA+TGG 0.468078 5_2:+4504575 None:intergenic
TCAACGATACATCGAAAATT+GGG 0.470889 5_2:-4501493 Msa0750940:three_prime_UTR
GAGACCTTGAATGATAAGAT+AGG 0.479761 5_2:-4501650 Msa0750940:CDS
ATGTTATTTGACAGTTTGAA+AGG 0.501388 5_2:-4501467 Msa0750940:three_prime_UTR
TGTGTGTGTTTGTGGTTATC+GGG 0.508259 5_2:+4504665 None:intergenic
ATACCGTTGTTCTGCACGAA+CGG 0.514026 5_2:+4504088 None:intergenic
CTTATCATTCAAGGTCTCCC+TGG 0.516050 5_2:+4501655 None:intergenic
AATAAGAAACAGACTACTGC+TGG 0.525540 5_2:+4501325 None:intergenic
CTAAGCTTGCTGCTGTTCAA+AGG 0.526007 5_2:-4504148 Msa0750940:CDS
CACCTTATTATTATGACGAA+GGG 0.542517 5_2:-4501887 Msa0750940:CDS
ACGTACAGATATATTATCAA+TGG 0.553012 5_2:+4501613 None:intergenic
AAGATGAATATGGGTTTCGT+AGG 0.554302 5_2:-4501920 Msa0750940:CDS
TAAGGTTCCTTCTGGTCACA+AGG 0.558149 5_2:+4504117 None:intergenic
ATTTGTGTAAAAGAAAATTG+AGG 0.558500 5_2:+4501040 None:intergenic
AGGAGAAGAGAATTGCTCTA+GGG 0.559216 5_2:-4504756 None:intergenic
TTCAGGATCACTTTCTAAAG+GGG 0.565814 5_2:+4501559 None:intergenic
CGTTGACAAGAGTATCGAGC+TGG 0.568983 5_2:+4501510 None:intergenic
CTTTCTAAAGGGGCAGCAGT+AGG 0.569227 5_2:+4501569 None:intergenic
CACCCGTTCGTGCAGAACAA+CGG 0.572053 5_2:-4504091 Msa0750940:intron
TGGCGCGAATGAAGTTGCCA+TGG 0.574110 5_2:+4504595 None:intergenic
AATCAAACCTTGTGACCAGA+AGG 0.589168 5_2:-4504124 Msa0750940:CDS
CCACCTTATTATTATGACGA+AGG 0.599010 5_2:-4501888 Msa0750940:CDS
GTTGCTGGCTTTCTTCTGGG+TGG 0.601949 5_2:-4503182 Msa0750940:CDS
TTGTGCAGTGATAACAGAGG+TGG 0.604543 5_2:-4503212 Msa0750940:intron
TTATTATGACGAAGGGCTAG+AGG 0.609430 5_2:-4501880 Msa0750940:intron
TGTGCAGTGATAACAGAGGT+GGG 0.614866 5_2:-4503211 Msa0750940:intron
AGATGAATATGGGTTTCGTA+GGG 0.632129 5_2:-4501919 Msa0750940:CDS
GGCGCGAATGAAGTTGCCAT+GGG 0.638975 5_2:+4504596 None:intergenic
AATATATCTGTACGTCTGAG+AGG 0.656883 5_2:-4501605 Msa0750940:CDS
GTGCAGTGATAACAGAGGTG+GGG 0.664089 5_2:-4503210 Msa0750940:intron
CCTTCGTCATAATAATAAGG+TGG 0.668403 5_2:+4501888 None:intergenic
TTTCTGAATGCAGAGGACCA+GGG 0.699975 5_2:-4501672 Msa0750940:intron
ATCGGGCGAGTATTACGAGG+AGG 0.701343 5_2:+4504682 None:intergenic
GTTATCGGGCGAGTATTACG+AGG 0.716780 5_2:+4504679 None:intergenic
CCTTTGTGCAGTGATAACAG+AGG 0.741745 5_2:-4503215 Msa0750940:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTTTTAATTTAAAAACTA+AGG + chr5_2:4504621-4504640 None:intergenic 10.0%
!!! ACTTCATTGAATTTAATTTT+AGG - chr5_2:4501264-4501283 Msa0750940:three_prime_UTR 15.0%
!!! CTTCATTGAATTTAATTTTA+GGG - chr5_2:4501265-4501284 Msa0750940:three_prime_UTR 15.0%
!!! TAATAATAGCTTAGATTTTT+CGG - chr5_2:4501393-4501412 Msa0750940:three_prime_UTR 15.0%
!! AATCATAATCATAATTGAAA+TGG + chr5_2:4501495-4501514 None:intergenic 15.0%
!!! CTTTAAATTTTAAGTGAAAA+TGG + chr5_2:4502321-4502340 None:intergenic 15.0%
!!! CATTTTCACTTAAAATTTAA+AGG - chr5_2:4502319-4502338 Msa0750940:intron 15.0%
!!! ATATGTTTTTTTCAAACAAA+TGG - chr5_2:4502367-4502386 Msa0750940:intron 15.0%
!! AACTATAAACTTAATTACAA+AGG + chr5_2:4502950-4502969 None:intergenic 15.0%
!! ATAAAAATTATAGCAATAGA+GGG + chr5_2:4504536-4504555 None:intergenic 15.0%
!! AATAAAAATTATAGCAATAG+AGG + chr5_2:4504537-4504556 None:intergenic 15.0%
!! AAAATCTATTAAGAAAAACT+AGG - chr5_2:4504635-4504654 Msa0750940:five_prime_UTR 15.0%
!! TAGAATAATAAACGAAGAAA+TGG + chr5_2:4501322-4501341 None:intergenic 20.0%
!! TGAATTCGAAAAACAAAAAA+AGG + chr5_2:4501459-4501478 None:intergenic 20.0%
!! AGAAGATATATTATCATTGA+TGG + chr5_2:4503217-4503236 None:intergenic 20.0%
!! AAAAAAAAAAAAGACTCGTA+TGG - chr5_2:4503250-4503269 Msa0750940:intron 20.0%
!!! AATATTGATTATAAAGCCAA+GGG + chr5_2:4503934-4503953 None:intergenic 20.0%
!!! AAATATTGATTATAAAGCCA+AGG + chr5_2:4503935-4503954 None:intergenic 20.0%
!!! AATCAATATTTTTGTGTAGT+TGG - chr5_2:4503944-4503963 Msa0750940:intron 20.0%
!!! AAAATATACAGTATGGATTA+TGG - chr5_2:4504411-4504430 Msa0750940:intron 20.0%
!! ATTTGTGTAAAAGAAAATTG+AGG + chr5_2:4504740-4504759 None:intergenic 20.0%
! AGATTACAATCAATTTACGT+CGG - chr5_2:4501353-4501372 Msa0750940:three_prime_UTR 25.0%
!!! ATTTGATTTGATTTTGCAGT+TGG - chr5_2:4501544-4501563 Msa0750940:CDS 25.0%
!! ATGTATAGTTATTGACTGTT+TGG - chr5_2:4501785-4501804 Msa0750940:intron 25.0%
!!! GTTGTTTTCATAAGCTATTT+TGG + chr5_2:4501917-4501936 None:intergenic 25.0%
!! CAAGAATCTCTATTTACTTT+TGG - chr5_2:4502048-4502067 Msa0750940:intron 25.0%
! AGATAAGCTAGAACTATATA+AGG + chr5_2:4502106-4502125 None:intergenic 25.0%
!!! TTTTTCAAACAAATGGTGAA+TGG - chr5_2:4502374-4502393 Msa0750940:intron 25.0%
! AAAAATATCATGAAAGAGAG+AGG + chr5_2:4502410-4502429 None:intergenic 25.0%
!! ATCTTATAGGTTGCTTATTT+TGG - chr5_2:4502504-4502523 Msa0750940:intron 25.0%
! ATTTGCAATAAAACTGAAGT+AGG + chr5_2:4502671-4502690 None:intergenic 25.0%
!!! TTAAGTTTATAGTTTGCTGA+TGG - chr5_2:4502956-4502975 Msa0750940:intron 25.0%
! TAAACTTGTGTCAATTCTTA+TGG - chr5_2:4503019-4503038 Msa0750940:intron 25.0%
!! GAGTATTGCTGTTAATATAA+TGG + chr5_2:4503280-4503299 None:intergenic 25.0%
!! GAATTAACTTTTCAAAGGAT+AGG - chr5_2:4503427-4503446 Msa0750940:intron 25.0%
! TAAGACATAATAACAAGAGA+GGG + chr5_2:4503612-4503631 None:intergenic 25.0%
! TTAAGACATAATAACAAGAG+AGG + chr5_2:4503613-4503632 None:intergenic 25.0%
! GTTATTATGTCTTAAGTACT+CGG - chr5_2:4503618-4503637 Msa0750940:intron 25.0%
!!! TTATTTTAGCAAAACGTTGA+AGG - chr5_2:4503643-4503662 Msa0750940:intron 25.0%
! TGCTAAATGAAGATGAATAT+GGG - chr5_2:4503848-4503867 Msa0750940:intron 25.0%
! ACGTACAGATATATTATCAA+TGG + chr5_2:4504167-4504186 None:intergenic 25.0%
!! ATGTTATTTGACAGTTTGAA+AGG - chr5_2:4504310-4504329 Msa0750940:intron 25.0%
! GACAGTAAAAATATACAGTA+TGG - chr5_2:4504404-4504423 Msa0750940:intron 25.0%
GAGATGAATAGAAACGAAAA+GGG + chr5_2:4501237-4501256 None:intergenic 30.0%
TGAGATGAATAGAAACGAAA+AGG + chr5_2:4501238-4501257 None:intergenic 30.0%
GGATTTCTAATTATAAGCCA+CGG + chr5_2:4501732-4501751 None:intergenic 30.0%
! CCACAAAATGAATTTGAAGT+CGG - chr5_2:4501750-4501769 Msa0750940:intron 30.0%
! CACAAAATGAATTTGAAGTC+GGG - chr5_2:4501751-4501770 Msa0750940:intron 30.0%
TTGTATATAAATGCCCTGTT+TGG + chr5_2:4502023-4502042 None:intergenic 30.0%
! AAACAGGGCATTTATATACA+AGG - chr5_2:4502022-4502041 Msa0750940:intron 30.0%
! ACAAGTATTTTCACACTAGA+TGG - chr5_2:4502143-4502162 Msa0750940:intron 30.0%
! CAAGTATTTTCACACTAGAT+GGG - chr5_2:4502144-4502163 Msa0750940:intron 30.0%
! AAGTATTTTCACACTAGATG+GGG - chr5_2:4502145-4502164 Msa0750940:intron 30.0%
TGAAATCAGAAGATACAAGT+GGG + chr5_2:4502298-4502317 None:intergenic 30.0%
! CTATCCAAAAAGTATGAGAA+AGG - chr5_2:4502729-4502748 Msa0750940:intron 30.0%
! TCTTCCTTTCTCATACTTTT+TGG + chr5_2:4502736-4502755 None:intergenic 30.0%
! AGGCTCTCTTTTTATAAGTT+AGG + chr5_2:4502930-4502949 None:intergenic 30.0%
AGAGAGCTTTCAAAAAAGTT+GGG - chr5_2:4502991-4503010 Msa0750940:intron 30.0%
! CTCTAAGAATACAATCCAAT+GGG + chr5_2:4503080-4503099 None:intergenic 30.0%
! TCTCTAAGAATACAATCCAA+TGG + chr5_2:4503081-4503100 None:intergenic 30.0%
ATTGTATTCTTAGAGAGTAG+TGG - chr5_2:4503085-4503104 Msa0750940:intron 30.0%
ATGGTACTAAACTCACATAT+GGG + chr5_2:4503182-4503201 None:intergenic 30.0%
AATGGTACTAAACTCACATA+TGG + chr5_2:4503183-4503202 None:intergenic 30.0%
TTGATGGAGATAAGTACAAA+TGG + chr5_2:4503201-4503220 None:intergenic 30.0%
CATTAAACAAATGTTGCACT+AGG + chr5_2:4503396-4503415 None:intergenic 30.0%
! GAGCTGAATTAACTTTTCAA+AGG - chr5_2:4503422-4503441 Msa0750940:intron 30.0%
! ACTACTAACTTTTCCATCTT+TGG - chr5_2:4503585-4503604 Msa0750940:intron 30.0%
ACATACTATGAGCTTCTAAA+TGG + chr5_2:4503797-4503816 None:intergenic 30.0%
TAGAAGCTCATAGTATGTTA+TGG - chr5_2:4503799-4503818 Msa0750940:intron 30.0%
CTGCTAAATGAAGATGAATA+TGG - chr5_2:4503847-4503866 Msa0750940:intron 30.0%
ATAATAATAAGGTGGTCTTC+TGG + chr5_2:4503884-4503903 None:intergenic 30.0%
CACCTTATTATTATGACGAA+GGG - chr5_2:4503890-4503909 Msa0750940:intron 30.0%
! TTTGTGTAGTTGGTATATAC+TGG - chr5_2:4503954-4503973 Msa0750940:intron 30.0%
! TGGTTTTTGATAGAACACTA+TGG - chr5_2:4503974-4503993 Msa0750940:intron 30.0%
! GTTGTTGTTGTTGTTGTAAT+TGG - chr5_2:4504047-4504066 Msa0750940:intron 30.0%
TATCAATGGCAGAATTTAGT+TGG + chr5_2:4504153-4504172 None:intergenic 30.0%
ATTCAGGATCACTTTCTAAA+GGG + chr5_2:4504222-4504241 None:intergenic 30.0%
AATTCAGGATCACTTTCTAA+AGG + chr5_2:4504223-4504242 None:intergenic 30.0%
TCAACGATACATCGAAAATT+GGG - chr5_2:4504284-4504303 Msa0750940:intron 30.0%
! GTTTGAAAGGTAAAAAGTGT+TGG - chr5_2:4504323-4504342 Msa0750940:intron 30.0%
AAAGCTGTCAAAATCTTTAG+TGG - chr5_2:4504364-4504383 Msa0750940:intron 30.0%
TACTGTCCATGGAAATAAAA+TGG + chr5_2:4504391-4504410 None:intergenic 30.0%
!! CTGTATATTTTTACTGTCCA+TGG + chr5_2:4504402-4504421 None:intergenic 30.0%
TAAATCAATGTCACGCGATT+AGG - chr5_2:4501052-4501071 Msa0750940:three_prime_UTR 35.0%
TGACCTGAAGAAATCGATAA+TGG + chr5_2:4501205-4501224 None:intergenic 35.0%
AGAAACGAAAAGGGAAAAAG+AGG + chr5_2:4501228-4501247 None:intergenic 35.0%
TTGCGAATCTAAGCAATTCA+TGG + chr5_2:4501425-4501444 None:intergenic 35.0%
!! TGATTTGATTTTGCAGTTGG+TGG - chr5_2:4501547-4501566 Msa0750940:CDS 35.0%
AAGCGTAATTCATCTGTGTT+TGG - chr5_2:4501604-4501623 Msa0750940:CDS 35.0%
! CCGACTTCAAATTCATTTTG+TGG + chr5_2:4501753-4501772 None:intergenic 35.0%
TTGAGCTTATCTATTGCCAT+AGG - chr5_2:4501818-4501837 Msa0750940:intron 35.0%
AAACAGTCACACAAAACCTA+TGG + chr5_2:4501837-4501856 None:intergenic 35.0%
TAGGAAAACAGCTTATGACA+TGG - chr5_2:4501866-4501885 Msa0750940:intron 35.0%
TTCAAACATAGCAACTAGCA+TGG + chr5_2:4502208-4502227 None:intergenic 35.0%
GACCAGATGTGAAGAAATAA+TGG - chr5_2:4502242-4502261 Msa0750940:intron 35.0%
! CACCATTATTTCTTCACATC+TGG + chr5_2:4502247-4502266 None:intergenic 35.0%
GTGAAATCAGAAGATACAAG+TGG + chr5_2:4502299-4502318 None:intergenic 35.0%
TCAAACAAATGGTGAATGGT+TGG - chr5_2:4502378-4502397 Msa0750940:intron 35.0%
TGCACCTTTCTTGATCTTAT+AGG - chr5_2:4502491-4502510 Msa0750940:intron 35.0%
GCAACCTATAAGATCAAGAA+AGG + chr5_2:4502498-4502517 None:intergenic 35.0%
CCATGTGATAAATGACTACT+CGG - chr5_2:4502764-4502783 Msa0750940:intron 35.0%
TCATTAACTACAGCCCAATT+TGG - chr5_2:4502855-4502874 Msa0750940:intron 35.0%
CCTAGAAACTAGTCCAAATT+GGG + chr5_2:4502871-4502890 None:intergenic 35.0%
ACCTAGAAACTAGTCCAAAT+TGG + chr5_2:4502872-4502891 None:intergenic 35.0%
GAGAGAGCTTTCAAAAAAGT+TGG - chr5_2:4502990-4503009 Msa0750940:intron 35.0%
! CTCCATGTCTGTTTTATGAA+TGG - chr5_2:4503046-4503065 Msa0750940:intron 35.0%
TGCCATTCATAAAACAGACA+TGG + chr5_2:4503051-4503070 None:intergenic 35.0%
GAAGTATAAGCGGTAATAAC+AGG + chr5_2:4503152-4503171 None:intergenic 35.0%
TGGTACTAAACTCACATATG+GGG + chr5_2:4503181-4503200 None:intergenic 35.0%
TGAAGTGATGAAGAGTTAGT+AGG + chr5_2:4503364-4503383 None:intergenic 35.0%
CAATATGCTGCATTGCAAAT+GGG - chr5_2:4503506-4503525 Msa0750940:intron 35.0%
AAGATGAATATGGGTTTCGT+AGG - chr5_2:4503857-4503876 Msa0750940:intron 35.0%
AGATGAATATGGGTTTCGTA+GGG - chr5_2:4503858-4503877 Msa0750940:intron 35.0%
CCTTCGTCATAATAATAAGG+TGG + chr5_2:4503892-4503911 None:intergenic 35.0%
CCACCTTATTATTATGACGA+AGG - chr5_2:4503889-4503908 Msa0750940:intron 35.0%
AGCCCTTCGTCATAATAATA+AGG + chr5_2:4503895-4503914 None:intergenic 35.0%
GAGACCTTGAATGATAAGAT+AGG - chr5_2:4504127-4504146 Msa0750940:CDS 35.0%
TTGGCCTATCTTATCATTCA+AGG + chr5_2:4504134-4504153 None:intergenic 35.0%
AATATATCTGTACGTCTGAG+AGG - chr5_2:4504172-4504191 Msa0750940:CDS 35.0%
! TTCAGGATCACTTTCTAAAG+GGG + chr5_2:4504221-4504240 None:intergenic 35.0%
GAAAGTGATCCTGAATTTGA+AGG - chr5_2:4504226-4504245 Msa0750940:intron 35.0%
CTTCAAATGCCTTCAAATTC+AGG + chr5_2:4504238-4504257 None:intergenic 35.0%
GTCAACGATACATCGAAAAT+TGG - chr5_2:4504283-4504302 Msa0750940:intron 35.0%
!! AGTGGACCATTTTATTTCCA+TGG - chr5_2:4504382-4504401 Msa0750940:intron 35.0%
AATAAGAAACAGACTACTGC+TGG + chr5_2:4504455-4504474 None:intergenic 35.0%
AATTATAGCAATAGAGGGTC+TGG + chr5_2:4504531-4504550 None:intergenic 35.0%
TGTGTGTGTTTGTGGTTATC+GGG + chr5_2:4501115-4501134 None:intergenic 40.0%
GTGTGTGTGTTTGTGGTTAT+CGG + chr5_2:4501116-4501135 None:intergenic 40.0%
TTTCTTCATTCTCTCTCCCA+TGG - chr5_2:4501165-4501184 Msa0750940:three_prime_UTR 40.0%
! CGCTTTGTTGAAAAAAGCTC+AGG + chr5_2:4501589-4501608 None:intergenic 40.0%
AATCAAACCTTGTGACCAGA+AGG - chr5_2:4501653-4501672 Msa0750940:CDS 40.0%
GTCAATTCAATTGTCATCCG+TGG - chr5_2:4501712-4501731 Msa0750940:intron 40.0%
GTGACTGTTTGAGAGAACTT+AGG - chr5_2:4501847-4501866 Msa0750940:intron 40.0%
AGTGAGTTGTTTGTCCAAAC+AGG - chr5_2:4502006-4502025 Msa0750940:intron 40.0%
GTGAGTTGTTTGTCCAAACA+GGG - chr5_2:4502007-4502026 Msa0750940:intron 40.0%
! CTTTTGAATGCTTCGAGCAT+TGG - chr5_2:4502453-4502472 Msa0750940:intron 40.0%
TGCACAAAGGAGACAGTTAA+TGG + chr5_2:4502552-4502571 None:intergenic 40.0%
!! AGCTTATGTTTTTGCTCCTC+AGG - chr5_2:4502636-4502655 Msa0750940:intron 40.0%
AAGTAGGAAGAAATCACCTG+AGG + chr5_2:4502655-4502674 None:intergenic 40.0%
CCGAGTAGTCATTTATCACA+TGG + chr5_2:4502767-4502786 None:intergenic 40.0%
!! CCCAATTTGGACTAGTTTCT+AGG - chr5_2:4502868-4502887 Msa0750940:intron 40.0%
!! AGTTTGCTGATGGAAGAGTT+AGG - chr5_2:4502966-4502985 Msa0750940:intron 40.0%
TGAATGGCATGTAAACCCAT+TGG - chr5_2:4503062-4503081 Msa0750940:intron 40.0%
GGGGATGAATGAAGTATAAG+CGG + chr5_2:4503162-4503181 None:intergenic 40.0%
GCAATATGCTGCATTGCAAA+TGG - chr5_2:4503505-4503524 Msa0750940:intron 40.0%
ACTCTTTGCTGAGACAAACT+AGG + chr5_2:4503697-4503716 None:intergenic 40.0%
! TAGTTTGTCTCAGCAAAGAG+TGG - chr5_2:4503696-4503715 Msa0750940:intron 40.0%
TTATTATGACGAAGGGCTAG+AGG - chr5_2:4503897-4503916 Msa0750940:intron 40.0%
!! TATGCTGTTTCTGAATGCAG+AGG - chr5_2:4504098-4504117 Msa0750940:CDS 40.0%
!! AAGGTAAAAAGTGTTGGTGC+TGG - chr5_2:4504329-4504348 Msa0750940:intron 40.0%
! GACTGTCAACGTTTGTGTTT+TGG - chr5_2:4504479-4504498 Msa0750940:intron 40.0%
! AAGCTGCGAATGTTTGTTAC+AGG - chr5_2:4504662-4504681 Msa0750940:five_prime_UTR 40.0%
AAGCTGTGTGTGTGTGTTTG+TGG + chr5_2:4501123-4501142 None:intergenic 45.0%
!! GCGCCATTATCGATTTCTTC+AGG - chr5_2:4501199-4501218 Msa0750940:three_prime_UTR 45.0%
CTTTGAACAGCAGCAAGCTT+AGG + chr5_2:4501631-4501650 None:intergenic 45.0%
!! CTAAGCTTGCTGCTGTTCAA+AGG - chr5_2:4501629-4501648 Msa0750940:CDS 45.0%
TAAGGTTCCTTCTGGTCACA+AGG + chr5_2:4501663-4501682 None:intergenic 45.0%
GGGTGAAATAAGGTTCCTTC+TGG + chr5_2:4501671-4501690 None:intergenic 45.0%
ATACCGTTGTTCTGCACGAA+CGG + chr5_2:4501692-4501711 None:intergenic 45.0%
GATACAAGTGGGACATACAG+AGG + chr5_2:4502287-4502306 None:intergenic 45.0%
CCTCTGTTATCACTGCACAA+AGG + chr5_2:4502565-4502584 None:intergenic 45.0%
CCTTTGTGCAGTGATAACAG+AGG - chr5_2:4502562-4502581 Msa0750940:intron 45.0%
TTGTGCAGTGATAACAGAGG+TGG - chr5_2:4502565-4502584 Msa0750940:intron 45.0%
TGTGCAGTGATAACAGAGGT+GGG - chr5_2:4502566-4502585 Msa0750940:intron 45.0%
TGATAACAGAGGTGGGGATT+TGG - chr5_2:4502573-4502592 Msa0750940:intron 45.0%
!! TTTGGTTGCTGGCTTTCTTC+TGG - chr5_2:4502591-4502610 Msa0750940:intron 45.0%
!! TTGGTTGCTGGCTTTCTTCT+GGG - chr5_2:4502592-4502611 Msa0750940:intron 45.0%
!!! CTTCTGGGTGGTGCTATTTT+CGG - chr5_2:4502607-4502626 Msa0750940:intron 45.0%
!!! TGCTGGTTGGGTGCATTTTT+TGG - chr5_2:4503121-4503140 Msa0750940:intron 45.0%
!!! GCTGGTTGGGTGCATTTTTT+GGG - chr5_2:4503122-4503141 Msa0750940:intron 45.0%
AACAAGAGAGGGTCCAAAGA+TGG + chr5_2:4503601-4503620 None:intergenic 45.0%
ACGAAGGGCTAGAGGTAATT+TGG - chr5_2:4503905-4503924 Msa0750940:intron 45.0%
! AGAGGTAATTTGGCTTCCCT+TGG - chr5_2:4503915-4503934 Msa0750940:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr5_2:4504023-4504042 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr5_2:4504024-4504043 None:intergenic 45.0%
TTTCTGAATGCAGAGGACCA+GGG - chr5_2:4504105-4504124 Msa0750940:CDS 45.0%
CTTATCATTCAAGGTCTCCC+TGG + chr5_2:4504125-4504144 None:intergenic 45.0%
!! GTGTTGGTGCTGGATTGATA+TGG - chr5_2:4504339-4504358 Msa0750940:intron 45.0%
GTTATCGGGCGAGTATTACG+AGG + chr5_2:4501101-4501120 None:intergenic 50.0%
CTGCACGAACGGGTGAAATA+AGG + chr5_2:4501681-4501700 None:intergenic 50.0%
TACCGTTGTTCTGCACGAAC+GGG + chr5_2:4501691-4501710 None:intergenic 50.0%
GTGCAGTGATAACAGAGGTG+GGG - chr5_2:4502567-4502586 Msa0750940:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr5_2:4504019-4504038 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr5_2:4504025-4504044 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr5_2:4504022-4504041 Msa0750940:intron 50.0%
GTTTCTGAATGCAGAGGACC+AGG - chr5_2:4504104-4504123 Msa0750940:CDS 50.0%
! CTTTCTAAAGGGGCAGCAGT+AGG + chr5_2:4504211-4504230 None:intergenic 50.0%
!! CGTTGACAAGAGTATCGAGC+TGG + chr5_2:4504270-4504289 None:intergenic 50.0%
ATCGGGCGAGTATTACGAGG+AGG + chr5_2:4501098-4501117 None:intergenic 55.0%
GGCGCGAATGAAGTTGCCAT+GGG + chr5_2:4501184-4501203 None:intergenic 55.0%
TGGCGCGAATGAAGTTGCCA+TGG + chr5_2:4501185-4501204 None:intergenic 55.0%
CACCCGTTCGTGCAGAACAA+CGG - chr5_2:4501686-4501705 Msa0750940:intron 55.0%
! AGAGGTGGGGATTTGGTTGC+TGG - chr5_2:4502580-4502599 Msa0750940:intron 55.0%
!! GTTGCTGGCTTTCTTCTGGG+TGG - chr5_2:4502595-4502614 Msa0750940:intron 55.0%
TTAGAGAGTAGTGGCGCCTC+TGG - chr5_2:4503094-4503113 Msa0750940:intron 55.0%
TAGAGAGTAGTGGCGCCTCT+GGG - chr5_2:4503095-4503114 Msa0750940:intron 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr5_2:4504011-4504030 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr5_2:4504010-4504029 Msa0750940:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr5_2:4504011-4504030 Msa0750940:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr5_2:4504017-4504036 Msa0750940:intron 55.0%
!! GCCTCTGGGCTGTGCTGGTT+GGG - chr5_2:4503109-4503128 Msa0750940:intron 65.0%
ACCCAACCAGCACAGCCCAG+AGG + chr5_2:4503113-4503132 None:intergenic 65.0%
! CGCCTCTGGGCTGTGCTGGT+TGG - chr5_2:4503108-4503127 Msa0750940:intron 70.0%
GTGGCGCCTCTGGGCTGTGC+TGG - chr5_2:4503104-4503123 Msa0750940:intron 75.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 4501036 4504763 4501036 ID=Msa0750940;Name=Msa0750940
chr5_2 mRNA 4501036 4504763 4501036 ID=Msa0750940-mRNA-1;Parent=Msa0750940;Name=Msa0750940-mRNA-1;_AED=0.03;_eAED=0.03;_QI=148|1|1|1|1|1|5|508|162
chr5_2 exon 4501036 4501681 4501036 ID=Msa0750940-mRNA-1:exon:1727;Parent=Msa0750940-mRNA-1
chr5_2 exon 4501881 4501964 4501881 ID=Msa0750940-mRNA-1:exon:1726;Parent=Msa0750940-mRNA-1
chr5_2 exon 4503142 4503226 4503142 ID=Msa0750940-mRNA-1:exon:1725;Parent=Msa0750940-mRNA-1
chr5_2 exon 4504092 4504236 4504092 ID=Msa0750940-mRNA-1:exon:1724;Parent=Msa0750940-mRNA-1
chr5_2 exon 4504579 4504763 4504579 ID=Msa0750940-mRNA-1:exon:1723;Parent=Msa0750940-mRNA-1
chr5_2 five_prime_UTR 4504616 4504763 4504616 ID=Msa0750940-mRNA-1:five_prime_utr;Parent=Msa0750940-mRNA-1
chr5_2 CDS 4504579 4504615 4504579 ID=Msa0750940-mRNA-1:cds;Parent=Msa0750940-mRNA-1
chr5_2 CDS 4504092 4504236 4504092 ID=Msa0750940-mRNA-1:cds;Parent=Msa0750940-mRNA-1
chr5_2 CDS 4503142 4503226 4503142 ID=Msa0750940-mRNA-1:cds;Parent=Msa0750940-mRNA-1
chr5_2 CDS 4501881 4501964 4501881 ID=Msa0750940-mRNA-1:cds;Parent=Msa0750940-mRNA-1
chr5_2 CDS 4501544 4501681 4501544 ID=Msa0750940-mRNA-1:cds;Parent=Msa0750940-mRNA-1
chr5_2 three_prime_UTR 4501036 4501543 4501036 ID=Msa0750940-mRNA-1:three_prime_utr;Parent=Msa0750940-mRNA-1
Gene Sequence

>Msa0750940

ATGGCAACTTCATTCGCGCCATTATCGATTTCTTCAGTTGGTGGATCTCATGTGAAGTCACCTGAGCTTTTTTCAACAAAGCGTAATTCATCTGTGTTTGGACCTAAGCTTGCTGCTGTTCAAAGGAAATCAAACCTTGTGACCAGAAGGAACCTTATTTCACCCGTTCGTGCAGAACAACGTGATAACAGAGGTGGGGATTTGGTTGCTGGCTTTCTTCTGGGTGGTGCTATTTTCGGAACTCTAGCTTATGTTTTTGCTCCTCAGATCAGAAAATCTCTGCTAAATGAAGATGAATATGGGTTTCGTAGGGCCAGAAGACCACCTTATTATTATGACGAAGGGCTAGAGAGGACCAGGGAGACCTTGAATGATAAGATAGGCCAACTAAATTCTGCCATTGATAATATATCTGTACGTCTGAGAGGTAACAAGAAAGTGCCTACTGCTGCCCCTTTAGAAAGTGATCCTGAATTTGAAGGCATTTGA

Protein sequence

>Msa0750940

MATSFAPLSISSVGGSHVKSPELFSTKRNSSVFGPKLAAVQRKSNLVTRRNLISPVRAEQRDNRGGDLVAGFLLGGAIFGTLAYVFAPQIRKSLLNEDEYGFRRARRPPYYYDEGLERTRETLNDKIGQLNSAIDNISVRLRGNKKVPTAAPLESDPEFEGI*