AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0492000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0492000 MtrunA17_Chr3g0084331 97.765 179 4 0 1 179 1 179 3.28e-130 362
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0492000 AT1G50900.1 81.538 130 23 1 51 179 46 175 1.73e-76 226

Find 47 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGCAGTACTTCAACTATA+TGG 0.189978 3_4:+15012998 Msa0492000:intron
GCTGAAGGTGCTGGTATTTA+TGG 0.229748 3_4:+15011885 Msa0492000:CDS
TATGCAGCACTGACACTTAA+AGG 0.234259 3_4:+15013431 Msa0492000:three_prime_UTR
AGAAACTTGTGAAGTGATTA+AGG 0.234288 3_4:-15011718 None:intergenic
TCAAGCTTCACCTCTAAATT+TGG 0.237887 3_4:+15011804 Msa0492000:CDS
ATTTCATATGATTTGGCCTT+TGG 0.261082 3_4:+15013331 Msa0492000:three_prime_UTR
CTATGTTATTTCATATGATT+TGG 0.267320 3_4:+15013324 Msa0492000:three_prime_UTR
TCTAAATTTGGACCCTCTAA+TGG 0.274812 3_4:+15011816 Msa0492000:CDS
CCACAAACTTGTCTTCTTCT+CGG 0.286283 3_4:+15011742 Msa0492000:CDS
TTGTCTTCTTCTCGGTTTCT+TGG 0.293903 3_4:+15011750 Msa0492000:CDS
TTCACATGCTGGTTCAAGTT+TGG 0.342748 3_4:+15011846 Msa0492000:CDS
TGAGGGAACATATGATAAAA+TGG 0.343607 3_4:+15013034 Msa0492000:CDS
TTGCAGTACTTCAACTATAT+GGG 0.353317 3_4:+15012999 Msa0492000:intron
GTAGTTGAAATGGCAAATAA+TGG 0.406753 3_4:-15013271 None:intergenic
GGATTTAGAATTTGAAATGA+TGG 0.407382 3_4:-15011697 None:intergenic
TGATAGAGATGATGTTGAAC+AGG 0.411754 3_4:+15011929 Msa0492000:CDS
AAACAGCTATGTAGTTGAAA+TGG 0.418113 3_4:-15013281 None:intergenic
CTAAATTTGGACCCTCTAAT+GGG 0.424402 3_4:+15011817 Msa0492000:CDS
TGTGAATCTTGACCCATTAG+AGG 0.437901 3_4:-15011829 None:intergenic
ATTAGAGGGTCCAAATTTAG+AGG 0.451507 3_4:-15011814 None:intergenic
ATGGGGATGCTTGCCGTTGA+GGG 0.451718 3_4:+15013017 Msa0492000:CDS
GGTATTAGAGTTAAGAGTGT+TGG 0.475847 3_4:+15011771 Msa0492000:CDS
TATCAAAATCATCACGAGAC+TGG 0.487504 3_4:-15011911 None:intergenic
CCGAGAAGAAGACAAGTTTG+TGG 0.501506 3_4:-15011742 None:intergenic
TAGAATTTGAAATGATGGGT+TGG 0.518105 3_4:-15011692 None:intergenic
TATGGGGATGCTTGCCGTTG+AGG 0.520774 3_4:+15013016 Msa0492000:CDS
AGGTGACTTGCCGAAAATTG+AGG 0.540400 3_4:+15013118 Msa0492000:CDS
ATGGGTCAAGATTCACATGC+TGG 0.548494 3_4:+15011835 Msa0492000:CDS
TGCAGTACTTCAACTATATG+GGG 0.549121 3_4:+15013000 Msa0492000:intron
TTTATCATATGTTCCCTCAA+CGG 0.549605 3_4:-15013030 None:intergenic
GATTTAGAATTTGAAATGAT+GGG 0.552146 3_4:-15011696 None:intergenic
ATTGAGGAACTCTTGAAAGC+AGG 0.563985 3_4:+15013134 Msa0492000:CDS
GGTGTTGATGCTGAAGGTGC+TGG 0.568178 3_4:+15011876 Msa0492000:CDS
CGCAGATGGACGGACAGCGT+TGG 0.577773 3_4:+15013178 Msa0492000:CDS
AACAACAGTAGAATGTCCAC+AGG 0.585605 3_4:-15013083 None:intergenic
CATGCTAATAATGAATCCAA+AGG 0.599508 3_4:-15013347 None:intergenic
ATGTAAAAGACGCAGATGGA+CGG 0.600271 3_4:+15013168 Msa0492000:CDS
TATGATGTAAAAGACGCAGA+TGG 0.606140 3_4:+15013164 Msa0492000:CDS
GTGAATCTTGACCCATTAGA+GGG 0.615376 3_4:-15011828 None:intergenic
CTGTTGTTAGCTGCATCAGA+AGG 0.617450 3_4:+15013098 Msa0492000:CDS
TTAGAGTTAAGAGTGTTGGA+TGG 0.638432 3_4:+15011775 Msa0492000:CDS
AACACAACACAACACAACAA+TGG 0.639555 3_4:+15011647 Msa0492000:exon
TATATCTATGATAGTCACAA+GGG 0.643596 3_4:-15013392 None:intergenic
GTATATCTATGATAGTCACA+AGG 0.656418 3_4:-15013393 None:intergenic
GGGAACATATGATAAAATGG+AGG 0.672409 3_4:+15013037 Msa0492000:CDS
GTGTTTGAAACTGACACATG+TGG 0.753712 3_4:+15013479 Msa0492000:three_prime_UTR
ACAACAGTAGAATGTCCACA+GGG 0.763235 3_4:-15013082 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAATGATATATTTGTTT+TGG + chr3_4:15012029-15012048 Msa0492000:intron 10.0%
!!! TTTTAATGATATATTTGTTT+TGG + chr3_4:15012029-15012048 Msa0492000:intron 10.0%
!!! AACAAAGTTTATTTTTTGAA+AGG + chr3_4:15011963-15011982 Msa0492000:intron 15.0%
!!! TAAAATCTATTTGTTTTACT+AGG - chr3_4:15012193-15012212 None:intergenic 15.0%
!!! ATTTTTTAAAAAACCATTTG+AGG - chr3_4:15012335-15012354 None:intergenic 15.0%
!! ATAAAGATGAACATAAAATT+TGG + chr3_4:15012783-15012802 Msa0492000:intron 15.0%
!! TAAAGATGAACATAAAATTT+GGG + chr3_4:15012784-15012803 Msa0492000:intron 15.0%
!!! AACAAAGTTTATTTTTTGAA+AGG + chr3_4:15011963-15011982 Msa0492000:intron 15.0%
!!! TAAAATCTATTTGTTTTACT+AGG - chr3_4:15012193-15012212 None:intergenic 15.0%
!!! ATTTTTTAAAAAACCATTTG+AGG - chr3_4:15012335-15012354 None:intergenic 15.0%
!! ATAAAGATGAACATAAAATT+TGG + chr3_4:15012783-15012802 Msa0492000:intron 15.0%
!! TAAAGATGAACATAAAATTT+GGG + chr3_4:15012784-15012803 Msa0492000:intron 15.0%
!!! GATTTAGAATTTGAAATGAT+GGG - chr3_4:15011699-15011718 None:intergenic 20.0%
!!! TTTTATAACTGCATAGAAAT+TGG + chr3_4:15012692-15012711 Msa0492000:intron 20.0%
!! TTTATAACTGCATAGAAATT+GGG + chr3_4:15012693-15012712 Msa0492000:intron 20.0%
!!! ATTTTCCTGTTTAAAAATGA+AGG - chr3_4:15012879-15012898 None:intergenic 20.0%
!!! CTATGTTATTTCATATGATT+TGG + chr3_4:15013324-15013343 Msa0492000:three_prime_UTR 20.0%
!!! GATTTAGAATTTGAAATGAT+GGG - chr3_4:15011699-15011718 None:intergenic 20.0%
!!! TTTTATAACTGCATAGAAAT+TGG + chr3_4:15012692-15012711 Msa0492000:intron 20.0%
!! TTTATAACTGCATAGAAATT+GGG + chr3_4:15012693-15012712 Msa0492000:intron 20.0%
!!! ATTTTCCTGTTTAAAAATGA+AGG - chr3_4:15012879-15012898 None:intergenic 20.0%
!!! CTATGTTATTTCATATGATT+TGG + chr3_4:15013324-15013343 Msa0492000:three_prime_UTR 20.0%
!! GGATTTAGAATTTGAAATGA+TGG - chr3_4:15011700-15011719 None:intergenic 25.0%
! TATAAAATGCAGTCACAAAA+TGG - chr3_4:15012077-15012096 None:intergenic 25.0%
! TGTGAATGAAGCATAAAAAA+GGG - chr3_4:15012138-15012157 None:intergenic 25.0%
! ATGTGAATGAAGCATAAAAA+AGG - chr3_4:15012139-15012158 None:intergenic 25.0%
!! AGATTTTATCTATGAGAGAT+TGG + chr3_4:15012205-15012224 Msa0492000:intron 25.0%
! GGAAATTATCTCCTAATTTA+AGG - chr3_4:15012307-15012326 None:intergenic 25.0%
! TAAAAAACCATTTGAGGAAA+GGG - chr3_4:15012329-15012348 None:intergenic 25.0%
! TTAAAAAACCATTTGAGGAA+AGG - chr3_4:15012330-15012349 None:intergenic 25.0%
! TGAGTTTACAATATCTAGTA+AGG + chr3_4:15012447-15012466 Msa0492000:intron 25.0%
!!! TTTTTTAACTTGTGTAACCA+TGG + chr3_4:15012498-15012517 Msa0492000:intron 25.0%
! GAAAGTGAAAATGTAATTGA+AGG + chr3_4:15012715-15012734 Msa0492000:intron 25.0%
! TATATCTATGATAGTCACAA+GGG - chr3_4:15013395-15013414 None:intergenic 25.0%
!! GGATTTAGAATTTGAAATGA+TGG - chr3_4:15011700-15011719 None:intergenic 25.0%
! TATAAAATGCAGTCACAAAA+TGG - chr3_4:15012077-15012096 None:intergenic 25.0%
! TGTGAATGAAGCATAAAAAA+GGG - chr3_4:15012138-15012157 None:intergenic 25.0%
! ATGTGAATGAAGCATAAAAA+AGG - chr3_4:15012139-15012158 None:intergenic 25.0%
!! AGATTTTATCTATGAGAGAT+TGG + chr3_4:15012205-15012224 Msa0492000:intron 25.0%
! GGAAATTATCTCCTAATTTA+AGG - chr3_4:15012307-15012326 None:intergenic 25.0%
! TAAAAAACCATTTGAGGAAA+GGG - chr3_4:15012329-15012348 None:intergenic 25.0%
! TTAAAAAACCATTTGAGGAA+AGG - chr3_4:15012330-15012349 None:intergenic 25.0%
! TGAGTTTACAATATCTAGTA+AGG + chr3_4:15012447-15012466 Msa0492000:intron 25.0%
!!! TTTTTTAACTTGTGTAACCA+TGG + chr3_4:15012498-15012517 Msa0492000:intron 25.0%
! GAAAGTGAAAATGTAATTGA+AGG + chr3_4:15012715-15012734 Msa0492000:intron 25.0%
! TATATCTATGATAGTCACAA+GGG - chr3_4:15013395-15013414 None:intergenic 25.0%
!! TAGAATTTGAAATGATGGGT+TGG - chr3_4:15011695-15011714 None:intergenic 30.0%
AGAAACTTGTGAAGTGATTA+AGG - chr3_4:15011721-15011740 None:intergenic 30.0%
! TGGTTCAAGTTTGGTAAAAA+TGG + chr3_4:15011855-15011874 Msa0492000:CDS 30.0%
GTGAATGAAGCATAAAAAAG+GGG - chr3_4:15012137-15012156 None:intergenic 30.0%
ACACTTACTAATTGTCTCTA+AGG - chr3_4:15012282-15012301 None:intergenic 30.0%
AGTAAGTGTCACCTTAAATT+AGG + chr3_4:15012293-15012312 Msa0492000:intron 30.0%
AAAAAACCATTTGAGGAAAG+GGG - chr3_4:15012328-15012347 None:intergenic 30.0%
!! CATAAGTTTGCTTTTGATTC+TGG + chr3_4:15012386-15012405 Msa0492000:intron 30.0%
!! TCTGTCCTTCATTTTTAAAC+AGG + chr3_4:15012871-15012890 Msa0492000:intron 30.0%
TTCTCTTATAGACTGTCATT+AGG + chr3_4:15012900-15012919 Msa0492000:intron 30.0%
TTTGCAGTACTTCAACTATA+TGG + chr3_4:15012998-15013017 Msa0492000:intron 30.0%
TTGCAGTACTTCAACTATAT+GGG + chr3_4:15012999-15013018 Msa0492000:intron 30.0%
TTTATCATATGTTCCCTCAA+CGG - chr3_4:15013033-15013052 None:intergenic 30.0%
TGAGGGAACATATGATAAAA+TGG + chr3_4:15013034-15013053 Msa0492000:CDS 30.0%
! TTCAAGAGTTCCTCAATTTT+CGG - chr3_4:15013131-15013150 None:intergenic 30.0%
GTAGTTGAAATGGCAAATAA+TGG - chr3_4:15013274-15013293 None:intergenic 30.0%
AAACAGCTATGTAGTTGAAA+TGG - chr3_4:15013284-15013303 None:intergenic 30.0%
! ATTTCATATGATTTGGCCTT+TGG + chr3_4:15013331-15013350 Msa0492000:three_prime_UTR 30.0%
CATGCTAATAATGAATCCAA+AGG - chr3_4:15013350-15013369 None:intergenic 30.0%
GTATATCTATGATAGTCACA+AGG - chr3_4:15013396-15013415 None:intergenic 30.0%
!! TAGAATTTGAAATGATGGGT+TGG - chr3_4:15011695-15011714 None:intergenic 30.0%
AGAAACTTGTGAAGTGATTA+AGG - chr3_4:15011721-15011740 None:intergenic 30.0%
! TGGTTCAAGTTTGGTAAAAA+TGG + chr3_4:15011855-15011874 Msa0492000:CDS 30.0%
GTGAATGAAGCATAAAAAAG+GGG - chr3_4:15012137-15012156 None:intergenic 30.0%
ACACTTACTAATTGTCTCTA+AGG - chr3_4:15012282-15012301 None:intergenic 30.0%
AGTAAGTGTCACCTTAAATT+AGG + chr3_4:15012293-15012312 Msa0492000:intron 30.0%
AAAAAACCATTTGAGGAAAG+GGG - chr3_4:15012328-15012347 None:intergenic 30.0%
!! CATAAGTTTGCTTTTGATTC+TGG + chr3_4:15012386-15012405 Msa0492000:intron 30.0%
!! TCTGTCCTTCATTTTTAAAC+AGG + chr3_4:15012871-15012890 Msa0492000:intron 30.0%
TTCTCTTATAGACTGTCATT+AGG + chr3_4:15012900-15012919 Msa0492000:intron 30.0%
TTTGCAGTACTTCAACTATA+TGG + chr3_4:15012998-15013017 Msa0492000:intron 30.0%
TTGCAGTACTTCAACTATAT+GGG + chr3_4:15012999-15013018 Msa0492000:intron 30.0%
TTTATCATATGTTCCCTCAA+CGG - chr3_4:15013033-15013052 None:intergenic 30.0%
TGAGGGAACATATGATAAAA+TGG + chr3_4:15013034-15013053 Msa0492000:CDS 30.0%
! TTCAAGAGTTCCTCAATTTT+CGG - chr3_4:15013131-15013150 None:intergenic 30.0%
GTAGTTGAAATGGCAAATAA+TGG - chr3_4:15013274-15013293 None:intergenic 30.0%
AAACAGCTATGTAGTTGAAA+TGG - chr3_4:15013284-15013303 None:intergenic 30.0%
! ATTTCATATGATTTGGCCTT+TGG + chr3_4:15013331-15013350 Msa0492000:three_prime_UTR 30.0%
CATGCTAATAATGAATCCAA+AGG - chr3_4:15013350-15013369 None:intergenic 30.0%
GTATATCTATGATAGTCACA+AGG - chr3_4:15013396-15013415 None:intergenic 30.0%
AACACAACACAACACAACAA+TGG + chr3_4:15011647-15011666 Msa0492000:exon 35.0%
! GGTATTAGAGTTAAGAGTGT+TGG + chr3_4:15011771-15011790 Msa0492000:CDS 35.0%
!! TTAGAGTTAAGAGTGTTGGA+TGG + chr3_4:15011775-15011794 Msa0492000:CDS 35.0%
TCAAGCTTCACCTCTAAATT+TGG + chr3_4:15011804-15011823 Msa0492000:CDS 35.0%
ATTAGAGGGTCCAAATTTAG+AGG - chr3_4:15011817-15011836 None:intergenic 35.0%
TCTAAATTTGGACCCTCTAA+TGG + chr3_4:15011816-15011835 Msa0492000:CDS 35.0%
CTAAATTTGGACCCTCTAAT+GGG + chr3_4:15011817-15011836 Msa0492000:CDS 35.0%
!! AAAAATGGTGTTGATGCTGA+AGG + chr3_4:15011870-15011889 Msa0492000:CDS 35.0%
TATCAAAATCATCACGAGAC+TGG - chr3_4:15011914-15011933 None:intergenic 35.0%
TGATAGAGATGATGTTGAAC+AGG + chr3_4:15011929-15011948 Msa0492000:CDS 35.0%
TAATTTCCCCTTTCCTCAAA+TGG + chr3_4:15012319-15012338 Msa0492000:intron 35.0%
TGAGAATGATGTTAGTTGCT+AGG + chr3_4:15012472-15012491 Msa0492000:intron 35.0%
GGAGTGTGCTTAAGTATTAA+TGG + chr3_4:15012527-15012546 Msa0492000:intron 35.0%
!!! CTCAGTGATGATTTTGAGTT+GGG - chr3_4:15012851-15012870 None:intergenic 35.0%
!! ACTCAGTGATGATTTTGAGT+TGG - chr3_4:15012852-15012871 None:intergenic 35.0%
TGCAGTACTTCAACTATATG+GGG + chr3_4:15013000-15013019 Msa0492000:intron 35.0%
GGGAACATATGATAAAATGG+AGG + chr3_4:15013037-15013056 Msa0492000:CDS 35.0%
TATGATGTAAAAGACGCAGA+TGG + chr3_4:15013164-15013183 Msa0492000:CDS 35.0%
AACACAACACAACACAACAA+TGG + chr3_4:15011647-15011666 Msa0492000:exon 35.0%
! GGTATTAGAGTTAAGAGTGT+TGG + chr3_4:15011771-15011790 Msa0492000:CDS 35.0%
!! TTAGAGTTAAGAGTGTTGGA+TGG + chr3_4:15011775-15011794 Msa0492000:CDS 35.0%
TCAAGCTTCACCTCTAAATT+TGG + chr3_4:15011804-15011823 Msa0492000:CDS 35.0%
ATTAGAGGGTCCAAATTTAG+AGG - chr3_4:15011817-15011836 None:intergenic 35.0%
TCTAAATTTGGACCCTCTAA+TGG + chr3_4:15011816-15011835 Msa0492000:CDS 35.0%
CTAAATTTGGACCCTCTAAT+GGG + chr3_4:15011817-15011836 Msa0492000:CDS 35.0%
!! AAAAATGGTGTTGATGCTGA+AGG + chr3_4:15011870-15011889 Msa0492000:CDS 35.0%
TATCAAAATCATCACGAGAC+TGG - chr3_4:15011914-15011933 None:intergenic 35.0%
TGATAGAGATGATGTTGAAC+AGG + chr3_4:15011929-15011948 Msa0492000:CDS 35.0%
TAATTTCCCCTTTCCTCAAA+TGG + chr3_4:15012319-15012338 Msa0492000:intron 35.0%
TGAGAATGATGTTAGTTGCT+AGG + chr3_4:15012472-15012491 Msa0492000:intron 35.0%
GGAGTGTGCTTAAGTATTAA+TGG + chr3_4:15012527-15012546 Msa0492000:intron 35.0%
!!! CTCAGTGATGATTTTGAGTT+GGG - chr3_4:15012851-15012870 None:intergenic 35.0%
!! ACTCAGTGATGATTTTGAGT+TGG - chr3_4:15012852-15012871 None:intergenic 35.0%
TGCAGTACTTCAACTATATG+GGG + chr3_4:15013000-15013019 Msa0492000:intron 35.0%
GGGAACATATGATAAAATGG+AGG + chr3_4:15013037-15013056 Msa0492000:CDS 35.0%
TATGATGTAAAAGACGCAGA+TGG + chr3_4:15013164-15013183 Msa0492000:CDS 35.0%
CCACAAACTTGTCTTCTTCT+CGG + chr3_4:15011742-15011761 Msa0492000:CDS 40.0%
TTGTCTTCTTCTCGGTTTCT+TGG + chr3_4:15011750-15011769 Msa0492000:CDS 40.0%
GTGAATCTTGACCCATTAGA+GGG - chr3_4:15011831-15011850 None:intergenic 40.0%
TGTGAATCTTGACCCATTAG+AGG - chr3_4:15011832-15011851 None:intergenic 40.0%
!! TTCACATGCTGGTTCAAGTT+TGG + chr3_4:15011846-15011865 Msa0492000:CDS 40.0%
AAAAAAGGGGACATGCAACA+AGG - chr3_4:15012124-15012143 None:intergenic 40.0%
! TCTATGAGAGATTGGTTCAG+TGG + chr3_4:15012213-15012232 Msa0492000:intron 40.0%
TTGGTTCAGTGGTAAGAGTT+TGG + chr3_4:15012224-15012243 Msa0492000:intron 40.0%
! GGCTTTGTAACCTTAAGAGA+CGG + chr3_4:15012245-15012264 Msa0492000:intron 40.0%
GATTCAAACTCCGTCTCTTA+AGG - chr3_4:15012258-15012277 None:intergenic 40.0%
! TAACTTGTGTAACCATGGTC+AGG + chr3_4:15012503-15012522 Msa0492000:intron 40.0%
! TAATTGAAGGAAAGCGCGAA+TGG + chr3_4:15012728-15012747 Msa0492000:intron 40.0%
AAGCCAAAAAATTCACCCTG+TGG + chr3_4:15013067-15013086 Msa0492000:CDS 40.0%
!!! TGTCCACAGGGTGAATTTTT+TGG - chr3_4:15013073-15013092 None:intergenic 40.0%
ACAACAGTAGAATGTCCACA+GGG - chr3_4:15013085-15013104 None:intergenic 40.0%
AACAACAGTAGAATGTCCAC+AGG - chr3_4:15013086-15013105 None:intergenic 40.0%
ATTGAGGAACTCTTGAAAGC+AGG + chr3_4:15013134-15013153 Msa0492000:CDS 40.0%
ATGTAAAAGACGCAGATGGA+CGG + chr3_4:15013168-15013187 Msa0492000:CDS 40.0%
!! TATGCAGCACTGACACTTAA+AGG + chr3_4:15013431-15013450 Msa0492000:three_prime_UTR 40.0%
! GTGTTTGAAACTGACACATG+TGG + chr3_4:15013479-15013498 Msa0492000:three_prime_UTR 40.0%
CCACAAACTTGTCTTCTTCT+CGG + chr3_4:15011742-15011761 Msa0492000:CDS 40.0%
TTGTCTTCTTCTCGGTTTCT+TGG + chr3_4:15011750-15011769 Msa0492000:CDS 40.0%
GTGAATCTTGACCCATTAGA+GGG - chr3_4:15011831-15011850 None:intergenic 40.0%
TGTGAATCTTGACCCATTAG+AGG - chr3_4:15011832-15011851 None:intergenic 40.0%
!! TTCACATGCTGGTTCAAGTT+TGG + chr3_4:15011846-15011865 Msa0492000:CDS 40.0%
AAAAAAGGGGACATGCAACA+AGG - chr3_4:15012124-15012143 None:intergenic 40.0%
! TCTATGAGAGATTGGTTCAG+TGG + chr3_4:15012213-15012232 Msa0492000:intron 40.0%
TTGGTTCAGTGGTAAGAGTT+TGG + chr3_4:15012224-15012243 Msa0492000:intron 40.0%
! GGCTTTGTAACCTTAAGAGA+CGG + chr3_4:15012245-15012264 Msa0492000:intron 40.0%
GATTCAAACTCCGTCTCTTA+AGG - chr3_4:15012258-15012277 None:intergenic 40.0%
! TAACTTGTGTAACCATGGTC+AGG + chr3_4:15012503-15012522 Msa0492000:intron 40.0%
! TAATTGAAGGAAAGCGCGAA+TGG + chr3_4:15012728-15012747 Msa0492000:intron 40.0%
AAGCCAAAAAATTCACCCTG+TGG + chr3_4:15013067-15013086 Msa0492000:CDS 40.0%
!!! TGTCCACAGGGTGAATTTTT+TGG - chr3_4:15013073-15013092 None:intergenic 40.0%
ACAACAGTAGAATGTCCACA+GGG - chr3_4:15013085-15013104 None:intergenic 40.0%
AACAACAGTAGAATGTCCAC+AGG - chr3_4:15013086-15013105 None:intergenic 40.0%
ATTGAGGAACTCTTGAAAGC+AGG + chr3_4:15013134-15013153 Msa0492000:CDS 40.0%
ATGTAAAAGACGCAGATGGA+CGG + chr3_4:15013168-15013187 Msa0492000:CDS 40.0%
!! TATGCAGCACTGACACTTAA+AGG + chr3_4:15013431-15013450 Msa0492000:three_prime_UTR 40.0%
! GTGTTTGAAACTGACACATG+TGG + chr3_4:15013479-15013498 Msa0492000:three_prime_UTR 40.0%
CCGAGAAGAAGACAAGTTTG+TGG - chr3_4:15011745-15011764 None:intergenic 45.0%
ATGGGTCAAGATTCACATGC+TGG + chr3_4:15011835-15011854 Msa0492000:CDS 45.0%
!! GCTGAAGGTGCTGGTATTTA+TGG + chr3_4:15011885-15011904 Msa0492000:CDS 45.0%
CAAAGAGAATGTGCATGCGA+TGG + chr3_4:15012948-15012967 Msa0492000:intron 45.0%
CTGTTGTTAGCTGCATCAGA+AGG + chr3_4:15013098-15013117 Msa0492000:CDS 45.0%
! AGGTGACTTGCCGAAAATTG+AGG + chr3_4:15013118-15013137 Msa0492000:CDS 45.0%
CCGAGAAGAAGACAAGTTTG+TGG - chr3_4:15011745-15011764 None:intergenic 45.0%
ATGGGTCAAGATTCACATGC+TGG + chr3_4:15011835-15011854 Msa0492000:CDS 45.0%
!! GCTGAAGGTGCTGGTATTTA+TGG + chr3_4:15011885-15011904 Msa0492000:CDS 45.0%
CAAAGAGAATGTGCATGCGA+TGG + chr3_4:15012948-15012967 Msa0492000:intron 45.0%
CTGTTGTTAGCTGCATCAGA+AGG + chr3_4:15013098-15013117 Msa0492000:CDS 45.0%
! AGGTGACTTGCCGAAAATTG+AGG + chr3_4:15013118-15013137 Msa0492000:CDS 45.0%
CTTGTGTAACCATGGTCAGG+AGG + chr3_4:15012506-15012525 Msa0492000:intron 50.0%
CTTGTGTAACCATGGTCAGG+AGG + chr3_4:15012506-15012525 Msa0492000:intron 50.0%
!! GGTGTTGATGCTGAAGGTGC+TGG + chr3_4:15011876-15011895 Msa0492000:CDS 55.0%
AAGCACACTCCTCCTGACCA+TGG - chr3_4:15012518-15012537 None:intergenic 55.0%
TATGGGGATGCTTGCCGTTG+AGG + chr3_4:15013016-15013035 Msa0492000:CDS 55.0%
ATGGGGATGCTTGCCGTTGA+GGG + chr3_4:15013017-15013036 Msa0492000:CDS 55.0%
!! GGTGTTGATGCTGAAGGTGC+TGG + chr3_4:15011876-15011895 Msa0492000:CDS 55.0%
AAGCACACTCCTCCTGACCA+TGG - chr3_4:15012518-15012537 None:intergenic 55.0%
TATGGGGATGCTTGCCGTTG+AGG + chr3_4:15013016-15013035 Msa0492000:CDS 55.0%
ATGGGGATGCTTGCCGTTGA+GGG + chr3_4:15013017-15013036 Msa0492000:CDS 55.0%
CGCAGATGGACGGACAGCGT+TGG + chr3_4:15013178-15013197 Msa0492000:CDS 65.0%
CGCAGATGGACGGACAGCGT+TGG + chr3_4:15013178-15013197 Msa0492000:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 15011600 15013519 15011600 ID=Msa0492000;Name=Msa0492000
chr3_4 mRNA 15011600 15013519 15011600 ID=Msa0492000-mRNA-1;Parent=Msa0492000;Name=Msa0492000-mRNA-1;_AED=0.02;_eAED=0.02;_QI=66|1|1|1|1|1|2|260|179
chr3_4 exon 15011600 15011950 15011600 ID=Msa0492000-mRNA-1:exon:4438;Parent=Msa0492000-mRNA-1
chr3_4 exon 15013005 15013519 15013005 ID=Msa0492000-mRNA-1:exon:4439;Parent=Msa0492000-mRNA-1
chr3_4 five_prime_UTR 15011600 15011665 15011600 ID=Msa0492000-mRNA-1:five_prime_utr;Parent=Msa0492000-mRNA-1
chr3_4 CDS 15011666 15011950 15011666 ID=Msa0492000-mRNA-1:cds;Parent=Msa0492000-mRNA-1
chr3_4 CDS 15013005 15013259 15013005 ID=Msa0492000-mRNA-1:cds;Parent=Msa0492000-mRNA-1
chr3_4 three_prime_UTR 15013260 15013519 15013260 ID=Msa0492000-mRNA-1:three_prime_utr;Parent=Msa0492000-mRNA-1
Gene Sequence

>Msa0492000

ATGGCTTCAATCACATGCATAACTCACCAACCCATCATTTCAAATTCTAAATCCTTAATCACTTCACAAGTTTCTTCCACAAACTTGTCTTCTTCTCGGTTTCTTGGTATTAGAGTTAAGAGTGTTGGATGGTCAAGCTCAAGCTTCACCTCTAAATTTGGACCCTCTAATGGGTCAAGATTCACATGCTGGTTCAAGTTTGGTAAAAATGGTGTTGATGCTGAAGGTGCTGGTATTTATGGTAGCCAGTCTCGTGATGATTTTGATAGAGATGATGTTGAACAGTACTTCAACTATATGGGGATGCTTGCCGTTGAGGGAACATATGATAAAATGGAGGCTCTTCTAAGCCAAAAAATTCACCCTGTGGACATTCTACTGTTGTTAGCTGCATCAGAAGGTGACTTGCCGAAAATTGAGGAACTCTTGAAAGCAGGAGCAAAATATGATGTAAAAGACGCAGATGGACGGACAGCGTTGGATAGAGCTAATGCTGAAGTTAAAGATTTCATTCTTAATTTTTCAGTGCAGAGAGCATGA

Protein sequence

>Msa0492000

MASITCITHQPIISNSKSLITSQVSSTNLSSSRFLGIRVKSVGWSSSSFTSKFGPSNGSRFTCWFKFGKNGVDAEGAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQKIHPVDILLLLAASEGDLPKIEELLKAGAKYDVKDADGRTALDRANAEVKDFILNFSVQRA*