AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0720380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0720380 MtrunA17_Chr5g0411091 90.554 307 27 2 1 306 1 306 1.15e-170 476
Msa0720380 MtrunA17_Chr7g0267571 32.127 221 116 5 82 282 95 301 5.84e-32 120
Msa0720380 MtrunA17_Chr3g0132451 32.567 261 141 5 50 308 62 289 2.83e-30 115
Msa0720380 MtrunA17_Chr1g0177101 37.838 185 94 6 96 268 108 283 3.46e-30 116
Msa0720380 MtrunA17_Chr3g0116631 38.418 177 104 4 98 271 111 285 4.60e-29 112
Msa0720380 MtrunA17_Chr1g0168601 37.255 153 89 3 120 271 86 232 3.60e-26 103
Msa0720380 MtrunA17_Chr4g0058151 32.961 179 116 3 98 275 124 299 7.45e-26 104
Msa0720380 MtrunA17_Chr1g0181111 27.413 259 151 7 46 274 27 278 1.87e-20 89.0
Msa0720380 MtrunA17_Chr3g0087481 32.584 178 107 6 96 265 60 232 1.68e-18 82.8
Msa0720380 MtrunA17_Chr7g0265341 26.568 271 166 8 61 307 105 366 5.18e-18 84.3
Msa0720380 MtrunA17_Chr7g0265341 27.568 185 120 4 97 271 250 430 3.06e-13 70.1
Msa0720380 MtrunA17_Chr1g0179701 25.735 272 158 9 61 298 97 358 1.92e-16 79.7
Msa0720380 MtrunA17_Chr1g0179701 27.933 179 123 4 97 271 242 418 3.93e-12 66.6
Msa0720380 MtrunA17_Chr1g0179701 22.353 255 179 7 50 299 20 260 2.44e-11 64.3
Msa0720380 MtrunA17_Chr6g0466451 32.065 184 114 5 97 271 106 287 4.71e-16 78.6
Msa0720380 MtrunA17_Chr6g0466451 25.116 215 150 5 97 307 16 223 7.69e-11 62.8
Msa0720380 MtrunA17_Chr6g0465631 32.065 184 114 5 97 271 106 287 4.71e-16 78.6
Msa0720380 MtrunA17_Chr6g0465631 25.116 215 150 5 97 307 16 223 8.50e-11 62.4
Msa0720380 MtrunA17_Chr1g0201151 31.443 194 102 8 97 271 210 391 6.82e-15 75.1
Msa0720380 MtrunA17_Chr0c09g0493511 30.978 184 116 5 97 271 119 300 8.69e-15 74.7
Msa0720380 MtrunA17_Chr6g0465751 30.435 184 117 5 97 271 201 382 4.80e-14 72.4
Msa0720380 MtrunA17_Chr6g0465691 30.978 184 116 5 97 271 119 300 6.81e-14 72.0
Msa0720380 MtrunA17_Chr6g0466501 30.978 184 116 5 97 271 201 382 7.78e-14 72.0
Msa0720380 MtrunA17_Chr4g0044541 26.842 190 115 4 97 271 214 394 5.84e-13 69.3
Msa0720380 MtrunA17_Chr4g0044541 27.933 179 119 5 95 271 121 291 1.94e-11 64.7
Msa0720380 MtrunA17_Chr4g0074711 24.878 205 136 6 96 294 74 266 1.58e-12 67.4
Msa0720380 MtrunA17_Chr4g0070231 24.074 216 148 5 96 308 46 248 2.88e-12 66.6
Msa0720380 MtrunA17_Chr3g0134141 28.019 207 122 7 82 271 188 384 1.01e-11 65.5
Msa0720380 MtrunA17_Chr3g0110211 29.310 174 111 4 100 271 29 192 5.03e-11 62.8
Msa0720380 MtrunA17_Chr2g0328791 24.121 199 133 4 79 271 2 188 7.19e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0720380 AT2G35410.1 47.535 284 134 4 1 275 1 278 2.24e-80 246
Msa0720380 AT4G09040.2 36.898 187 112 2 95 278 33 216 5.31e-33 122
Msa0720380 AT5G50250.1 32.509 283 148 7 31 273 9 288 1.17e-32 122
Msa0720380 AT4G09040.1 36.898 187 112 2 95 278 93 276 2.84e-32 122
Msa0720380 AT4G24770.1 36.000 175 108 3 98 271 152 323 2.67e-28 112
Msa0720380 AT4G24770.2 36.000 175 108 3 98 271 152 323 2.67e-28 112
Msa0720380 AT3G52380.1 32.461 191 106 5 98 273 118 300 7.82e-28 110
Msa0720380 AT1G60000.1 31.443 194 124 4 82 271 68 256 1.04e-24 100
Msa0720380 AT2G37220.1 31.658 199 103 5 98 271 93 283 2.13e-24 100
Msa0720380 AT3G52150.2 30.415 217 129 7 59 265 46 250 1.71e-19 86.3
Msa0720380 AT3G52150.1 30.415 217 129 7 59 265 46 250 1.71e-19 86.3
Msa0720380 AT1G01080.2 31.667 180 109 6 98 266 110 286 1.33e-17 81.6
Msa0720380 AT1G01080.1 31.285 179 110 6 98 266 110 285 1.86e-17 81.3
Msa0720380 AT1G01080.3 31.707 164 100 5 98 251 110 271 8.81e-16 76.6
Msa0720380 AT4G34110.1 30.049 203 117 6 85 271 203 396 1.49e-15 77.4
Msa0720380 AT4G34110.1 26.554 177 120 4 97 271 125 293 4.16e-11 63.9
Msa0720380 AT3G16380.1 26.471 204 137 4 77 271 183 382 5.47e-14 72.8
Msa0720380 AT1G49760.1 28.421 190 112 4 97 271 225 405 1.46e-13 71.6
Msa0720380 AT1G49760.1 26.027 219 143 7 97 307 134 341 4.50e-13 70.1
Msa0720380 AT1G49760.2 28.421 190 112 4 97 271 225 405 1.46e-13 71.6
Msa0720380 AT1G49760.2 26.027 219 143 7 97 307 134 341 4.50e-13 70.1
Msa0720380 AT1G22760.1 26.852 216 151 4 95 307 135 346 3.07e-13 70.5
Msa0720380 AT1G22760.1 23.958 192 118 5 97 271 230 410 1.62e-12 68.6
Msa0720380 AT1G71770.1 25.000 192 116 5 97 271 240 420 1.51e-11 65.5
Msa0720380 AT1G71770.2 25.000 192 116 5 97 271 240 420 1.51e-11 65.5
Msa0720380 AT2G23350.1 26.630 184 111 4 97 271 135 303 1.68e-11 65.5
Msa0720380 AT1G34140.1 27.957 186 119 4 97 271 120 301 2.06e-11 64.7
Msa0720380 AT2G36660.1 24.576 236 150 6 55 271 53 279 3.41e-11 64.3

Find 88 sgRNAs with CRISPR-Local

Find 383 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAGGAATACCCTTAAAAT+TGG 0.147910 5_1:+16353517 None:intergenic
GTGGGAGCTGGAGGAGGTGG+AGG 0.249111 5_1:+16356904 None:intergenic
AAATACGAATTGAGATTTAT+AGG 0.249541 5_1:+16353550 None:intergenic
ACTTCTTCACTTCCAGCTTC+TGG 0.261287 5_1:+16353812 None:intergenic
AGGTTATACATTTGTTACTA+TGG 0.261835 5_1:-16358490 Msa0720380:CDS
AATACGAATTGAGATTTATA+GGG 0.280422 5_1:+16353551 None:intergenic
CATGTACTGATCTTTGGATA+TGG 0.329945 5_1:-16353737 Msa0720380:three_prime_UTR
TAAAGCGTAGCAGAGTGTTT+TGG 0.351271 5_1:+16358892 None:intergenic
GGAGCTGGAGGAGGTGGAGG+AGG 0.377123 5_1:+16356907 None:intergenic
TAGATTGTAAAGAGCAAAGA+TGG 0.379214 5_1:-16358522 Msa0720380:CDS
ATTAGGATTTATGACTCATC+TGG 0.380633 5_1:+16353764 None:intergenic
GGAGTGGGAGCTGGAGGAGG+TGG 0.381685 5_1:+16356901 None:intergenic
AAATATCAGGCCGGATAGTA+AGG 0.395140 5_1:-16356957 Msa0720380:CDS
CTTCCCTTGCAAAGCAGAAA+TGG 0.396033 5_1:+16356690 None:intergenic
TCTGTATACATGAGGTAATC+AGG 0.398193 5_1:+16353675 None:intergenic
ATCCCTTTGCAGGAGTTACT+TGG 0.398199 5_1:-16353920 Msa0720380:intron
TTAGGAATACCCTTAAAATT+GGG 0.408771 5_1:+16353518 None:intergenic
GTGGTTATTGTGAGAGAAAA+GGG 0.410128 5_1:+16358946 None:intergenic
GGTGGGAAATCTGCTGGGTA+TGG 0.419393 5_1:-16356751 Msa0720380:CDS
AAGACAACCCTGGCTGAAAC+TGG 0.421042 5_1:+16356784 None:intergenic
AGCAAAGATGGGAAGGGAAA+AGG 0.425037 5_1:-16358510 Msa0720380:CDS
ACCCCTGGTGGGAAATCTGC+TGG 0.433529 5_1:-16356757 Msa0720380:CDS
TGTGGTTATTGTGAGAGAAA+AGG 0.437946 5_1:+16358945 None:intergenic
CATTTCGTTGCTTCCACCAA+TGG 0.438857 5_1:-16359101 Msa0720380:exon
TTAGGAGTGGGAGCTGGAGG+AGG 0.441065 5_1:+16356898 None:intergenic
ATTACATAACGTGCTTCCTT+AGG 0.449237 5_1:+16356880 None:intergenic
CTGATCTTTGGATATGGTAA+TGG 0.449660 5_1:-16353731 Msa0720380:three_prime_UTR
AGGGTTGTCTTTCAAACCCC+TGG 0.459212 5_1:-16356772 Msa0720380:CDS
GCCTTGGTCTCTTTCTAAGC+CGG 0.461671 5_1:-16358774 Msa0720380:CDS
TGGATTTGTTTCTTATCATA+CGG 0.462438 5_1:-16356731 Msa0720380:CDS
TCGTTGTCTTTAACTTGCCT+TGG 0.470028 5_1:-16358790 Msa0720380:CDS
TCAAAACACCAGTTTCAGCC+AGG 0.476508 5_1:-16356792 Msa0720380:CDS
TCTTTCTAAGCCGGATATCA+AGG 0.480039 5_1:-16358765 Msa0720380:CDS
GCGAAGAGATCCTTGATATC+CGG 0.480231 5_1:+16358755 None:intergenic
GGATTCAAGAGAGGAGGCTC+AGG 0.485969 5_1:-16358469 Msa0720380:CDS
TCCTTAGGAGTGGGAGCTGG+AGG 0.495862 5_1:+16356895 None:intergenic
TAGATCTTGCTTTCCACGCA+AGG 0.504732 5_1:+16356845 None:intergenic
CAAACTCTACCCTTACTATC+CGG 0.508382 5_1:+16356947 None:intergenic
TTGATGTGTGAATACAGTTA+TGG 0.514213 5_1:+16359063 None:intergenic
AAGAAGAAAAGTGAAGTTTG+TGG 0.523665 5_1:+16358927 None:intergenic
TACCCAGCAGATTTCCCACC+AGG 0.524803 5_1:+16356754 None:intergenic
TCCTCCAGCTCCCACTCCTA+AGG 0.525600 5_1:-16356896 Msa0720380:CDS
TGTAAAGAGCAAAGATGGGA+AGG 0.529390 5_1:-16358517 Msa0720380:CDS
GCTTCCTTAGGAGTGGGAGC+TGG 0.530043 5_1:+16356892 None:intergenic
AATACCCTTAAAATTGGGAC+TGG 0.530910 5_1:+16353523 None:intergenic
GTAAGGGTAGAGTTTGCAAA+GGG 0.535644 5_1:-16356940 Msa0720380:CDS
GACGACGCGCAACCAGAAGC+TGG 0.536977 5_1:-16353824 Msa0720380:CDS
AGGTGGAGAAGTAGATAAGC+GGG 0.541369 5_1:+16359129 None:intergenic
TCATGTATACAGAGATATGA+AGG 0.545315 5_1:-16353665 Msa0720380:three_prime_UTR
AGATTGTAAAGAGCAAAGAT+GGG 0.546323 5_1:-16358521 Msa0720380:CDS
GTTTGACATACCTTAAAATG+TGG 0.549505 5_1:-16353606 Msa0720380:three_prime_UTR
CTGCCATTTCTGCTTTGCAA+GGG 0.550388 5_1:-16356693 Msa0720380:CDS
GTTGATTCTAACGTTGCCAT+TGG 0.551004 5_1:+16359085 None:intergenic
AGTAAGGGTAGAGTTTGCAA+AGG 0.552899 5_1:-16356941 Msa0720380:CDS
CATTTCTGCTTTGCAAGGGA+AGG 0.553509 5_1:-16356689 Msa0720380:intron
GATTCTAACGTTGCCATTGG+TGG 0.560508 5_1:+16359088 None:intergenic
GCTGCCATTTCTGCTTTGCA+AGG 0.563024 5_1:-16356694 Msa0720380:CDS
CCCCTGGTGGGAAATCTGCT+GGG 0.563781 5_1:-16356756 Msa0720380:CDS
TGTGTGGTTCAGGAAATATC+AGG 0.564742 5_1:-16356970 Msa0720380:intron
TCTTGCTTTCCACGCAAGGT+TGG 0.567345 5_1:+16356849 None:intergenic
TACTATGGATTCAAGAGAGG+AGG 0.574347 5_1:-16358475 Msa0720380:CDS
GAGTAGAAACCTCTACAAGC+TGG 0.574421 5_1:-16353705 Msa0720380:three_prime_UTR
TGTTACTATGGATTCAAGAG+AGG 0.579721 5_1:-16358478 Msa0720380:CDS
TGTTTCTTATCATACGGAGG+AGG 0.584671 5_1:-16356725 Msa0720380:CDS
CCCAGCAGATTTCCCACCAG+GGG 0.587328 5_1:+16356756 None:intergenic
TCTATGCATCCAACCTTGCG+TGG 0.590146 5_1:-16356858 Msa0720380:CDS
GTTGTCTTTCAAACCCCTGG+TGG 0.593929 5_1:-16356769 Msa0720380:CDS
CAAAACACCAGTTTCAGCCA+GGG 0.593941 5_1:-16356791 Msa0720380:CDS
GGTAAAACTCCAGCTTGTAG+AGG 0.605360 5_1:+16353696 None:intergenic
TAACGTGCTTCCTTAGGAGT+GGG 0.608846 5_1:+16356886 None:intergenic
TTGTCTTTCAAACCCCTGGT+GGG 0.617575 5_1:-16356768 Msa0720380:CDS
ATAACGTGCTTCCTTAGGAG+TGG 0.620126 5_1:+16356885 None:intergenic
TTCATATCTCTGTATACATG+AGG 0.624417 5_1:+16353667 None:intergenic
AGCAACGAAATGCGACGAGG+TGG 0.626439 5_1:+16359112 None:intergenic
GTAAAGAGCAAAGATGGGAA+GGG 0.628943 5_1:-16358516 Msa0720380:CDS
ACTCTGCTACGCTTTACAAG+AGG 0.635592 5_1:-16358885 Msa0720380:CDS
AATATCAGGCCGGATAGTAA+GGG 0.636833 5_1:-16356956 Msa0720380:CDS
AAGGATCTCTTCGCTCAATG+TGG 0.649377 5_1:-16358746 Msa0720380:CDS
ATTTGTTTCTTATCATACGG+AGG 0.652812 5_1:-16356728 Msa0720380:CDS
TAAGCGGGTAGTGATGATGC+CGG 0.653564 5_1:+16359144 None:intergenic
TGGTTCAGGAAATATCAGGC+CGG 0.653607 5_1:-16356966 Msa0720380:intron
ACCCAGCAGATTTCCCACCA+GGG 0.675913 5_1:+16356755 None:intergenic
TCCGGCTTAGAAAGAGACCA+AGG 0.685478 5_1:+16358773 None:intergenic
GAGGTGGAGAAGTAGATAAG+CGG 0.696414 5_1:+16359128 None:intergenic
TGGAACTGTAACCGACGTTG+AGG 0.703106 5_1:-16358726 Msa0720380:intron
AGGGGTTTGAAAGACAACCC+TGG 0.712579 5_1:+16356774 None:intergenic
GGAAGCAACGAAATGCGACG+AGG 0.731562 5_1:+16359109 None:intergenic
AAGGCAAGTTAAAGACAACG+AGG 0.810771 5_1:+16358792 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTTTAATTTTTGAATTTT+TGG - chr5_1:16354001-16354020 Msa0720380:intron 10.0%
!!! AATTTAGAAACTTTTTTTAA+AGG - chr5_1:16354436-16354455 Msa0720380:intron 10.0%
!!! AATTAGATAATTAATTTTAC+TGG - chr5_1:16354719-16354738 Msa0720380:intron 10.0%
!! TATTAAGAAATTTAATGTTA+TGG - chr5_1:16358194-16358213 Msa0720380:intron 10.0%
!!! ATTAAGAAGATTCATTATTT+TGG + chr5_1:16354325-16354344 None:intergenic 15.0%
!! ATAATGAATCTTCTTAATAA+TGG - chr5_1:16354327-16354346 Msa0720380:intron 15.0%
!! TTATTTATGTTATGAATTTC+TGG + chr5_1:16355390-16355409 None:intergenic 15.0%
!!! TTAGGTAGTATTTTTTTAAT+AGG + chr5_1:16355437-16355456 None:intergenic 15.0%
!! TTAAAAAAATACTACCTAAA+AGG - chr5_1:16355438-16355457 Msa0720380:intron 15.0%
!! TAAAAAAATACTACCTAAAA+GGG - chr5_1:16355439-16355458 Msa0720380:intron 15.0%
!!! ATTAAAGATTTTTTTCAACA+AGG + chr5_1:16356152-16356171 None:intergenic 15.0%
!! AAAATTATGAAAAAGAAACA+CGG + chr5_1:16356810-16356829 None:intergenic 15.0%
!!! TGTTTCTTTTTCATAATTTT+GGG - chr5_1:16356810-16356829 Msa0720380:CDS 15.0%
!! TTATAACATTAAAATTGTTG+AGG + chr5_1:16357215-16357234 None:intergenic 15.0%
!! ATTTGATATAGTTATTGTAT+AGG - chr5_1:16358141-16358160 Msa0720380:intron 15.0%
!! GAATAAAAAATCATATGAAT+AGG - chr5_1:16358461-16358480 Msa0720380:CDS 15.0%
!! TACTACATGATTGTTTAATT+TGG - chr5_1:16354106-16354125 Msa0720380:intron 20.0%
!!! ATTGTTTAATTTGGAGAAAT+GGG - chr5_1:16354115-16354134 Msa0720380:intron 20.0%
!! ATAAAATAAAAATAGATGCG+AGG + chr5_1:16354267-16354286 None:intergenic 20.0%
!! CAACAAATATAGAAAATAAG+AGG + chr5_1:16355148-16355167 None:intergenic 20.0%
!!! AACCAAATTAACATATGTTT+TGG + chr5_1:16355236-16355255 None:intergenic 20.0%
!!! AAAACATATGTTAATTTGGT+TGG - chr5_1:16355235-16355254 Msa0720380:intron 20.0%
!!! AAACATATGTTAATTTGGTT+GGG - chr5_1:16355236-16355255 Msa0720380:intron 20.0%
!! TACTAAAATGTAAAAACTAG+AGG - chr5_1:16355281-16355300 Msa0720380:intron 20.0%
!! AAATAATCTTATCACCTAAA+AGG - chr5_1:16355404-16355423 Msa0720380:intron 20.0%
!! AATAATCTTATCACCTAAAA+GGG - chr5_1:16355405-16355424 Msa0720380:intron 20.0%
!!! AACTAAAATGGACATTTTAA+AGG + chr5_1:16355502-16355521 None:intergenic 20.0%
!!! ATTCATTTTTCATTCAACTT+CGG + chr5_1:16355623-16355642 None:intergenic 20.0%
!!! AATTTATTGTGTTTGACTTT+TGG - chr5_1:16356096-16356115 Msa0720380:intron 20.0%
!! GTTTAAAGATTATAGACTAA+TGG + chr5_1:16356344-16356363 None:intergenic 20.0%
!!! TGTTCAAGATATGTATTTTA+TGG - chr5_1:16356420-16356439 Msa0720380:intron 20.0%
!!! ATATAAGCATACAATTTTTG+TGG - chr5_1:16356612-16356631 Msa0720380:intron 20.0%
!! AGATAAATGTAGAAAAGTAA+AGG + chr5_1:16356733-16356752 None:intergenic 20.0%
!!! TAATTGAAAATCCGATTTTA+AGG + chr5_1:16356779-16356798 None:intergenic 20.0%
!! AAATTATGAAAAAGAAACAC+GGG + chr5_1:16356809-16356828 None:intergenic 20.0%
!!! GTGTTTCTTTTTCATAATTT+TGG - chr5_1:16356809-16356828 Msa0720380:CDS 20.0%
!!! AAACTTCATGTTTATAGTTT+TGG + chr5_1:16357472-16357491 None:intergenic 20.0%
!! AAAAATTACCATACAGTAAA+AGG + chr5_1:16358006-16358025 None:intergenic 20.0%
!! ATAGAAAATGTAGAAACAAT+GGG - chr5_1:16358250-16358269 Msa0720380:intron 20.0%
!! TACATTCTTCTATTATAGTA+TGG - chr5_1:16358276-16358295 Msa0720380:intron 20.0%
!!! TAGCATGCTTAATTTTTATT+TGG - chr5_1:16358537-16358556 Msa0720380:intron 20.0%
!!! CTTAATTTTTATTTGGATTG+TGG - chr5_1:16358544-16358563 Msa0720380:intron 20.0%
!!! ATTCACAGTATTTTTCAATT+AGG - chr5_1:16359045-16359064 Msa0720380:CDS 20.0%
!!! TAAACTTTATCCACATTTTA+AGG + chr5_1:16359085-16359104 None:intergenic 20.0%
!! AATACGAATTGAGATTTATA+GGG + chr5_1:16359130-16359149 None:intergenic 20.0%
!! AAATACGAATTGAGATTTAT+AGG + chr5_1:16359131-16359150 None:intergenic 20.0%
! GAAAAACCGATAAATAAAAC+CGG - chr5_1:16353515-16353534 Msa0720380:three_prime_UTR 25.0%
!!! GATTGTTTAATTTGGAGAAA+TGG - chr5_1:16354114-16354133 Msa0720380:intron 25.0%
!! AGGTTATACATTTGTTACTA+TGG - chr5_1:16354188-16354207 Msa0720380:intron 25.0%
!!! TCGTTGATAATATAGGATAA+AGG + chr5_1:16354542-16354561 None:intergenic 25.0%
!!! CTTTGAAGTTTAGTTATTTG+AGG - chr5_1:16355191-16355210 Msa0720380:intron 25.0%
! TGCCAAAACATATGTTAATT+TGG - chr5_1:16355231-16355250 Msa0720380:intron 25.0%
! ATTATATCACACTTCTTTGA+GGG + chr5_1:16355345-16355364 None:intergenic 25.0%
! ATACAGAAAGGAAACTAAAA+TGG + chr5_1:16355514-16355533 None:intergenic 25.0%
! GAGATATAACATATACAGAA+AGG + chr5_1:16355526-16355545 None:intergenic 25.0%
! TTTAATGACATCTAATTGTG+TGG - chr5_1:16355692-16355711 Msa0720380:intron 25.0%
!! TGGATTTGTTTCTTATCATA+CGG - chr5_1:16355947-16355966 Msa0720380:intron 25.0%
! CATATGTAAATAAATAGCAG+AGG + chr5_1:16356045-16356064 None:intergenic 25.0%
! TGGAGACAATTTGATATTAA+TGG - chr5_1:16356116-16356135 Msa0720380:intron 25.0%
! TAAGACTCGATAATATTGTT+TGG - chr5_1:16356474-16356493 Msa0720380:intron 25.0%
! TCGATAATATTGTTTGGATT+TGG - chr5_1:16356480-16356499 Msa0720380:intron 25.0%
! TAATATTGTTTGGATTTGGA+TGG - chr5_1:16356484-16356503 Msa0720380:intron 25.0%
!! CAATTTTTGTGGAGATATAA+AGG - chr5_1:16356623-16356642 Msa0720380:intron 25.0%
! GGAGATATAAAGGATAAATA+TGG - chr5_1:16356633-16356652 Msa0720380:intron 25.0%
! AATTATGAAAAAGAAACACG+GGG + chr5_1:16356808-16356827 None:intergenic 25.0%
!! TTTTACTAACAAAGCACATA+AGG - chr5_1:16357491-16357510 Msa0720380:intron 25.0%
! TTTACTAACAAAGCACATAA+GGG - chr5_1:16357492-16357511 Msa0720380:intron 25.0%
! TTAAATATTACTGCTCTTTG+AGG - chr5_1:16357533-16357552 Msa0720380:intron 25.0%
! TAAATATTACTGCTCTTTGA+GGG - chr5_1:16357534-16357553 Msa0720380:intron 25.0%
! TTGTTGTGATACAATGAATT+TGG - chr5_1:16357700-16357719 Msa0720380:intron 25.0%
! TACAATGAATTTGGTTATGT+TGG - chr5_1:16357709-16357728 Msa0720380:intron 25.0%
! TTCCTTATATAGAAGTGAAA+TGG - chr5_1:16358025-16358044 Msa0720380:intron 25.0%
! TGATATAGTTATTGTATAGG+AGG - chr5_1:16358144-16358163 Msa0720380:intron 25.0%
! GATAGAAAATGTAGAAACAA+TGG - chr5_1:16358249-16358268 Msa0720380:intron 25.0%
!! CAAGTAGATATTATTTGTTG+AGG - chr5_1:16358417-16358436 Msa0720380:intron 25.0%
!!! GTTCATTTTTATACACAACT+TGG - chr5_1:16358569-16358588 Msa0720380:intron 25.0%
! GAAAAAAAAGTTAAAGAAGC+TGG - chr5_1:16358806-16358825 Msa0720380:CDS 25.0%
! AGATCAGTACATGAAAAATT+AGG + chr5_1:16358934-16358953 None:intergenic 25.0%
!!! ATTTTTCATGTACTGATCTT+TGG - chr5_1:16358935-16358954 Msa0720380:CDS 25.0%
! TTAGGAATACCCTTAAAATT+GGG + chr5_1:16359163-16359182 None:intergenic 25.0%
! TTTAGGAATACCCTTAAAAT+TGG + chr5_1:16359164-16359183 None:intergenic 25.0%
!!! ATGATGCCGGTTTTATTTAT+CGG + chr5_1:16353524-16353543 None:intergenic 30.0%
TTGATGTGTGAATACAGTTA+TGG + chr5_1:16353618-16353637 None:intergenic 30.0%
!!! AGTTGAAGCATTGAGTTTTA+TGG + chr5_1:16353690-16353709 None:intergenic 30.0%
AAGAAGAAAAGTGAAGTTTG+TGG + chr5_1:16353754-16353773 None:intergenic 30.0%
ATGACATGATTAAGAGTTTG+TGG - chr5_1:16354065-16354084 Msa0720380:intron 30.0%
TAGATTGTAAAGAGCAAAGA+TGG - chr5_1:16354156-16354175 Msa0720380:intron 30.0%
AGATTGTAAAGAGCAAAGAT+GGG - chr5_1:16354157-16354176 Msa0720380:intron 30.0%
! ACCAAAGAATCACATCATTT+TGG - chr5_1:16354389-16354408 Msa0720380:intron 30.0%
TCCAAAATGATGTGATTCTT+TGG + chr5_1:16354393-16354412 None:intergenic 30.0%
!! TTTTACTGGCTAACATGATT+TGG - chr5_1:16354733-16354752 Msa0720380:intron 30.0%
GATTATATCACACTTCTTTG+AGG + chr5_1:16355346-16355365 None:intergenic 30.0%
! TAATAGGCTAAATCCCTTTT+AGG + chr5_1:16355421-16355440 None:intergenic 30.0%
CACAAAAGTTGAATGAGATA+TGG + chr5_1:16355662-16355681 None:intergenic 30.0%
! TATCTCATTCAACTTTTGTG+TGG - chr5_1:16355662-16355681 Msa0720380:intron 30.0%
! ATTTGTTTCTTATCATACGG+AGG - chr5_1:16355950-16355969 Msa0720380:intron 30.0%
AGTTATCATCTCATTGTTCA+TGG - chr5_1:16356013-16356032 Msa0720380:intron 30.0%
GTATCTTTAAGCAGAACTTT+AGG - chr5_1:16356386-16356405 Msa0720380:intron 30.0%
TCAAATAGCCAAGTATAGTT+TGG + chr5_1:16356510-16356529 None:intergenic 30.0%
! TTATTGGTGCTTTGATATGT+CGG + chr5_1:16356668-16356687 None:intergenic 30.0%
ACTCTAGTGATCCTTAAAAT+CGG - chr5_1:16356765-16356784 Msa0720380:CDS 30.0%
!! TAATTTTGGGTCAGAGTAAA+TGG - chr5_1:16356823-16356842 Msa0720380:CDS 30.0%
ACAGATAAATTGCATTTGCA+TGG - chr5_1:16357034-16357053 Msa0720380:intron 30.0%
TAAAATAGATGCTGTAGTAG+AGG - chr5_1:16357103-16357122 Msa0720380:intron 30.0%
!!! ATAGTTTTGGTTGAATCAGA+GGG + chr5_1:16357459-16357478 None:intergenic 30.0%
!!! TATAGTTTTGGTTGAATCAG+AGG + chr5_1:16357460-16357479 None:intergenic 30.0%
ACCACTTACTCTATTGATAT+AGG - chr5_1:16357654-16357673 Msa0720380:intron 30.0%
TGTGTCATGTAGTTGAAAAT+TGG - chr5_1:16357776-16357795 Msa0720380:intron 30.0%
GTGTCATGTAGTTGAAAATT+GGG - chr5_1:16357777-16357796 Msa0720380:intron 30.0%
TAAAAACCAATTGAGGCTTA+TGG - chr5_1:16357912-16357931 Msa0720380:intron 30.0%
! AGTGTTTTCCTTTTACTGTA+TGG - chr5_1:16357995-16358014 Msa0720380:intron 30.0%
! TGCCATTTCACTTCTATATA+AGG + chr5_1:16358030-16358049 None:intergenic 30.0%
! TTGCAAGCATTTTGTTAAAG+AGG + chr5_1:16358400-16358419 None:intergenic 30.0%
TATGAATAGGCTTGTCTTAA+AGG - chr5_1:16358474-16358493 Msa0720380:CDS 30.0%
AGTAAAGAATGAAACCAGAT+AGG + chr5_1:16358637-16358656 None:intergenic 30.0%
CTTCAGAACAAACAAACAAA+AGG + chr5_1:16358673-16358692 None:intergenic 30.0%
ACTGTCTTCAACTGTATAAA+TGG - chr5_1:16358695-16358714 Msa0720380:intron 30.0%
CTGTCTTCAACTGTATAAAT+GGG - chr5_1:16358696-16358715 Msa0720380:intron 30.0%
!!! TCACTTATTTTTACGAGAAG+TGG + chr5_1:16358788-16358807 None:intergenic 30.0%
ATTAGGATTTATGACTCATC+TGG + chr5_1:16358917-16358936 None:intergenic 30.0%
TTCATATCTCTGTATACATG+AGG + chr5_1:16359014-16359033 None:intergenic 30.0%
TCATGTATACAGAGATATGA+AGG - chr5_1:16359013-16359032 Msa0720380:CDS 30.0%
GTTTGACATACCTTAAAATG+TGG - chr5_1:16359072-16359091 Msa0720380:CDS 30.0%
! TTTTTCCAGTCCCAATTTTA+AGG - chr5_1:16359150-16359169 Msa0720380:five_prime_UTR 30.0%
! TTTTCCAGTCCCAATTTTAA+GGG - chr5_1:16359151-16359170 Msa0720380:five_prime_UTR 30.0%
!! GCATTGAGTTTTATGGAATC+TGG + chr5_1:16353683-16353702 None:intergenic 35.0%
GTGGTTATTGTGAGAGAAAA+GGG + chr5_1:16353735-16353754 None:intergenic 35.0%
TGTGGTTATTGTGAGAGAAA+AGG + chr5_1:16353736-16353755 None:intergenic 35.0%
!!! TTTTGAAACAACCTCAACGT+CGG + chr5_1:16353966-16353985 None:intergenic 35.0%
TGTTACTATGGATTCAAGAG+AGG - chr5_1:16354200-16354219 Msa0720380:intron 35.0%
! GTATGTTTGTCTGTTCTGAA+TGG - chr5_1:16354294-16354313 Msa0720380:intron 35.0%
!!! TCACATCATTTTGGAACTCT+TGG - chr5_1:16354398-16354417 Msa0720380:intron 35.0%
!! TTAGATTTGTTAGACGTCAG+TGG - chr5_1:16354476-16354495 Msa0720380:intron 35.0%
!! GGTTTGGTCGTTGATAATAT+AGG + chr5_1:16354549-16354568 None:intergenic 35.0%
GCTTCATAAGCATTTCATCT+GGG + chr5_1:16354605-16354624 None:intergenic 35.0%
TGCTTCATAAGCATTTCATC+TGG + chr5_1:16354606-16354625 None:intergenic 35.0%
GATGAAATGCTTATGAAGCA+TGG - chr5_1:16354606-16354625 Msa0720380:intron 35.0%
!! AGACAAGAAATGAGAGTGTT+GGG + chr5_1:16354699-16354718 None:intergenic 35.0%
! TAGACAAGAAATGAGAGTGT+TGG + chr5_1:16354700-16354719 None:intergenic 35.0%
!!! GCTTTTTTGACACTCAACTA+TGG - chr5_1:16354758-16354777 Msa0720380:intron 35.0%
! TGTTAATTTGGTTGGGACTA+TGG - chr5_1:16355243-16355262 Msa0720380:intron 35.0%
! AGTGACATAACTTCCCTTTT+AGG + chr5_1:16355455-16355474 None:intergenic 35.0%
CTCTAGCAAAAAACTTCCAA+CGG - chr5_1:16355543-16355562 Msa0720380:intron 35.0%
ATTACATAACGTGCTTCCTT+AGG + chr5_1:16355801-16355820 None:intergenic 35.0%
!!! GCTATTTCTCAGGGTATTTT+AGG - chr5_1:16356253-16356272 Msa0720380:intron 35.0%
ACACCATTGTGAGATATCAT+TGG - chr5_1:16356294-16356313 Msa0720380:intron 35.0%
CTTCCAATGATATCTCACAA+TGG + chr5_1:16356300-16356319 None:intergenic 35.0%
!!! TGGTTTTGTAGTGTTTTGAG+TGG - chr5_1:16356551-16356570 Msa0720380:intron 35.0%
!! TTTGTAGTGTTTTGAGTGGT+TGG - chr5_1:16356555-16356574 Msa0720380:intron 35.0%
!! GTTTTGAGTGGTTGGATATA+TGG - chr5_1:16356563-16356582 Msa0720380:intron 35.0%
CAAGCTAAGTGAAAATCAGA+AGG + chr5_1:16356701-16356720 None:intergenic 35.0%
CATATTGGTGCAGAAAATAC+TGG + chr5_1:16356869-16356888 None:intergenic 35.0%
! TCTGCACCAATATGTTTTCA+CGG - chr5_1:16356875-16356894 Msa0720380:CDS 35.0%
!! AAAGCACCGTGAAAACATAT+TGG + chr5_1:16356884-16356903 None:intergenic 35.0%
!!! CGGTGCTTTTGTTTTAAACT+AGG - chr5_1:16356895-16356914 Msa0720380:CDS 35.0%
ATTGTTAAGCTCAGCTATGT+AGG - chr5_1:16356932-16356951 Msa0720380:CDS 35.0%
!! AAGAAGCATCTGTGTATTCA+GGG - chr5_1:16357153-16357172 Msa0720380:intron 35.0%
TAAAATTGTTGAGGTGATCG+CGG + chr5_1:16357206-16357225 None:intergenic 35.0%
AATGTTATAAACCCTAACCC+AGG - chr5_1:16357225-16357244 Msa0720380:intron 35.0%
AAAATGAGTTTCCTGGGTTA+GGG + chr5_1:16357239-16357258 None:intergenic 35.0%
ACATGCAAAATGAGTTTCCT+GGG + chr5_1:16357245-16357264 None:intergenic 35.0%
! ATGCAATTTTTCTTGTGCAG+CGG - chr5_1:16357570-16357589 Msa0720380:intron 35.0%
AAATACCGCCAATAGGATTA+AGG + chr5_1:16357608-16357627 None:intergenic 35.0%
!! GTATTTCATGCGGTTTTGAT+GGG - chr5_1:16357622-16357641 Msa0720380:intron 35.0%
GCCTATATCAATAGAGTAAG+TGG + chr5_1:16357658-16357677 None:intergenic 35.0%
! AGGCTTGAATTTTGCAAACA+AGG - chr5_1:16357674-16357693 Msa0720380:intron 35.0%
ATATGTGACTAATACGGCTA+TGG - chr5_1:16357803-16357822 Msa0720380:intron 35.0%
GTGTGAGTAAAAACCAATTG+AGG - chr5_1:16357905-16357924 Msa0720380:intron 35.0%
! TCTTTTCCATAAGCCTCAAT+TGG + chr5_1:16357921-16357940 None:intergenic 35.0%
ATAGAAGTGAAATGGCACTA+CGG - chr5_1:16358033-16358052 Msa0720380:intron 35.0%
! GTTACTTTAATTGAGCTGAG+AGG - chr5_1:16358101-16358120 Msa0720380:intron 35.0%
TTAATTGAGCTGAGAGGATA+AGG - chr5_1:16358107-16358126 Msa0720380:intron 35.0%
GTTATTGTATAGGAGGAGTT+TGG - chr5_1:16358151-16358170 Msa0720380:intron 35.0%
TTACTAGTGTACTGAGATAC+AGG - chr5_1:16358307-16358326 Msa0720380:intron 35.0%
! GAGGATGCATGATTTCTTTT+TGG - chr5_1:16358436-16358455 Msa0720380:intron 35.0%
GATAGGAATACACACAATGA+CGG + chr5_1:16358620-16358639 None:intergenic 35.0%
TCATTGTGTGTATTCCTATC+TGG - chr5_1:16358620-16358639 Msa0720380:intron 35.0%
! CATGTACTGATCTTTGGATA+TGG - chr5_1:16358941-16358960 Msa0720380:CDS 35.0%
CTGATCTTTGGATATGGTAA+TGG - chr5_1:16358947-16358966 Msa0720380:CDS 35.0%
TCTGTATACATGAGGTAATC+AGG + chr5_1:16359006-16359025 None:intergenic 35.0%
AATACCCTTAAAATTGGGAC+TGG + chr5_1:16359158-16359177 None:intergenic 35.0%
! GTTGATTCTAACGTTGCCAT+TGG + chr5_1:16353596-16353615 None:intergenic 40.0%
! CTGGTGATTTTGCTAGGAAA+TGG + chr5_1:16353664-16353683 None:intergenic 40.0%
! TGGAATCTGGTGATTTTGCT+AGG + chr5_1:16353670-16353689 None:intergenic 40.0%
!! GAGTGTTTTGGATTTGGAAG+AGG + chr5_1:16353777-16353796 None:intergenic 40.0%
!! GTAGCAGAGTGTTTTGGATT+TGG + chr5_1:16353783-16353802 None:intergenic 40.0%
!! TAAAGCGTAGCAGAGTGTTT+TGG + chr5_1:16353789-16353808 None:intergenic 40.0%
AAGGCAAGTTAAAGACAACG+AGG + chr5_1:16353889-16353908 None:intergenic 40.0%
!! TCGTTGTCTTTAACTTGCCT+TGG - chr5_1:16353888-16353907 Msa0720380:CDS 40.0%
TCTTTCTAAGCCGGATATCA+AGG - chr5_1:16353913-16353932 Msa0720380:intron 40.0%
TGTAAAGAGCAAAGATGGGA+AGG - chr5_1:16354161-16354180 Msa0720380:intron 40.0%
GTAAAGAGCAAAGATGGGAA+GGG - chr5_1:16354162-16354181 Msa0720380:intron 40.0%
TACTATGGATTCAAGAGAGG+AGG - chr5_1:16354203-16354222 Msa0720380:intron 40.0%
! TGTTTGTCTGTTCTGAATGG+TGG - chr5_1:16354297-16354316 Msa0720380:intron 40.0%
GACATACACTGTGCAATGAA+AGG - chr5_1:16354349-16354368 Msa0720380:intron 40.0%
AAAGGAGTTGCGAGTCATAA+GGG + chr5_1:16354524-16354543 None:intergenic 40.0%
TAAAGGAGTTGCGAGTCATA+AGG + chr5_1:16354525-16354544 None:intergenic 40.0%
AGACTCTTAACACCTCAAGA+AGG + chr5_1:16354639-16354658 None:intergenic 40.0%
TTTGACACTCAACTATGGCT+TGG - chr5_1:16354763-16354782 Msa0720380:intron 40.0%
CGAAATACATACATGTGTGG+GGG + chr5_1:16354926-16354945 None:intergenic 40.0%
CCGAAATACATACATGTGTG+GGG + chr5_1:16354927-16354946 None:intergenic 40.0%
CCCCACACATGTATGTATTT+CGG - chr5_1:16354924-16354943 Msa0720380:intron 40.0%
CCCGAAATACATACATGTGT+GGG + chr5_1:16354928-16354947 None:intergenic 40.0%
CCCACACATGTATGTATTTC+GGG - chr5_1:16354925-16354944 Msa0720380:intron 40.0%
CCACACATGTATGTATTTCG+GGG - chr5_1:16354926-16354945 Msa0720380:intron 40.0%
CACACATGTATGTATTTCGG+GGG - chr5_1:16354927-16354946 Msa0720380:intron 40.0%
TTTGGCATAGCATGTTCAAC+TGG + chr5_1:16355218-16355237 None:intergenic 40.0%
! CAAAGCATCATCTCTATTCC+TGG + chr5_1:16355582-16355601 None:intergenic 40.0%
GACATCTAATTGTGTGGTTC+AGG - chr5_1:16355698-16355717 Msa0720380:intron 40.0%
TGTGTGGTTCAGGAAATATC+AGG - chr5_1:16355708-16355727 Msa0720380:intron 40.0%
AAATATCAGGCCGGATAGTA+AGG - chr5_1:16355721-16355740 Msa0720380:intron 40.0%
AATATCAGGCCGGATAGTAA+GGG - chr5_1:16355722-16355741 Msa0720380:intron 40.0%
CAAACTCTACCCTTACTATC+CGG + chr5_1:16355734-16355753 None:intergenic 40.0%
AGTAAGGGTAGAGTTTGCAA+AGG - chr5_1:16355737-16355756 Msa0720380:intron 40.0%
GTAAGGGTAGAGTTTGCAAA+GGG - chr5_1:16355738-16355757 Msa0720380:intron 40.0%
TGTTTCTTATCATACGGAGG+AGG - chr5_1:16355953-16355972 Msa0720380:intron 40.0%
CATGGCGAGAAAATATTGGA+TGG + chr5_1:16356231-16356250 None:intergenic 40.0%
GCTACATGGCGAGAAAATAT+TGG + chr5_1:16356235-16356254 None:intergenic 40.0%
TACCCTGAGAAATAGCTACA+TGG + chr5_1:16356249-16356268 None:intergenic 40.0%
TTGGATGGCCAAACTATACT+TGG - chr5_1:16356499-16356518 Msa0720380:intron 40.0%
ACTTGGCTATTTGAGTGTCT+AGG - chr5_1:16356516-16356535 Msa0720380:intron 40.0%
TGTCTAGGTTATAGCTGCAT+TGG - chr5_1:16356531-16356550 Msa0720380:intron 40.0%
AAGTGAAAATCAGAAGGTGG+TGG + chr5_1:16356695-16356714 None:intergenic 40.0%
GCTAAGTGAAAATCAGAAGG+TGG + chr5_1:16356698-16356717 None:intergenic 40.0%
CTCCTTCGGATATGAAATTC+AGG + chr5_1:16357129-16357148 None:intergenic 40.0%
GATGCTTCTTCTAACTCCTT+CGG + chr5_1:16357143-16357162 None:intergenic 40.0%
!! GAAGAAGCATCTGTGTATTC+AGG - chr5_1:16357152-16357171 Msa0720380:intron 40.0%
!! AGAAGCATCTGTGTATTCAG+GGG - chr5_1:16357154-16357173 Msa0720380:intron 40.0%
CAGAGCTTCTTAGGGATATA+GGG - chr5_1:16357177-16357196 Msa0720380:intron 40.0%
CAAAATGAGTTTCCTGGGTT+AGG + chr5_1:16357240-16357259 None:intergenic 40.0%
GACATGCAAAATGAGTTTCC+TGG + chr5_1:16357246-16357265 None:intergenic 40.0%
AGACGATCAATGACACATGT+TGG + chr5_1:16357360-16357379 None:intergenic 40.0%
CAAAGCACATAAGGGAAAGA+AGG - chr5_1:16357500-16357519 Msa0720380:intron 40.0%
!! GGTATTTCATGCGGTTTTGA+TGG - chr5_1:16357621-16357640 Msa0720380:intron 40.0%
GGGTGCATATGTGACTAATA+CGG - chr5_1:16357797-16357816 Msa0720380:intron 40.0%
TGGATGCATCATAAGGAGTT+GGG - chr5_1:16357846-16357865 Msa0720380:intron 40.0%
TCTGCAATATGCCAGTGAAA+GGG - chr5_1:16357873-16357892 Msa0720380:intron 40.0%
TTGAGGCTTATGGAAAAGAG+TGG - chr5_1:16357922-16357941 Msa0720380:intron 40.0%
TGAGGCTTATGGAAAAGAGT+GGG - chr5_1:16357923-16357942 Msa0720380:intron 40.0%
! TAAGTATTGCGCTGTAGTGA+TGG - chr5_1:16357960-16357979 Msa0720380:intron 40.0%
!! CATATAGTTTGCTAGTGCAG+TGG - chr5_1:16358072-16358091 Msa0720380:intron 40.0%
AGCTTCAATAACACACTTGG+GGG + chr5_1:16358597-16358616 None:intergenic 40.0%
GAGCTTCAATAACACACTTG+GGG + chr5_1:16358598-16358617 None:intergenic 40.0%
GGAGCTTCAATAACACACTT+GGG + chr5_1:16358599-16358618 None:intergenic 40.0%
AGGTGGAGAAGTAGATAAGC+GGG + chr5_1:16353552-16353571 None:intergenic 45.0%
GAGGTGGAGAAGTAGATAAG+CGG + chr5_1:16353553-16353572 None:intergenic 45.0%
CATTTCGTTGCTTCCACCAA+TGG - chr5_1:16353577-16353596 Msa0720380:three_prime_UTR 45.0%
GATTCTAACGTTGCCATTGG+TGG + chr5_1:16353593-16353612 None:intergenic 45.0%
ACTCTGCTACGCTTTACAAG+AGG - chr5_1:16353793-16353812 Msa0720380:CDS 45.0%
GCGAAGAGATCCTTGATATC+CGG + chr5_1:16353926-16353945 None:intergenic 45.0%
AAGGATCTCTTCGCTCAATG+TGG - chr5_1:16353932-16353951 Msa0720380:intron 45.0%
AGCAAAGATGGGAAGGGAAA+AGG - chr5_1:16354168-16354187 Msa0720380:intron 45.0%
AAGGAGTTGCGAGTCATAAG+GGG + chr5_1:16354523-16354542 None:intergenic 45.0%
!! ACTCAACTATGGCTTGGTAC+AGG - chr5_1:16354769-16354788 Msa0720380:intron 45.0%
CCCCGAAATACATACATGTG+TGG + chr5_1:16354929-16354948 None:intergenic 45.0%
GTTTGTGCTAGTGTTGTGTC+TGG - chr5_1:16355080-16355099 Msa0720380:intron 45.0%
ATGAAGCACGAAGACAACTG+TGG + chr5_1:16355109-16355128 None:intergenic 45.0%
AGGGAAGTTATGTCACTCTG+CGG - chr5_1:16355458-16355477 Msa0720380:intron 45.0%
TGGAGCTTAGTTTAGTCCGT+TGG + chr5_1:16355562-16355581 None:intergenic 45.0%
!! AACGGACTAAACTAAGCTCC+AGG - chr5_1:16355561-16355580 Msa0720380:intron 45.0%
TGGTTCAGGAAATATCAGGC+CGG - chr5_1:16355712-16355731 Msa0720380:intron 45.0%
TAACGTGCTTCCTTAGGAGT+GGG + chr5_1:16355795-16355814 None:intergenic 45.0%
ATAACGTGCTTCCTTAGGAG+TGG + chr5_1:16355796-16355815 None:intergenic 45.0%
TAGATCTTGCTTTCCACGCA+AGG + chr5_1:16355836-16355855 None:intergenic 45.0%
TCAAAACACCAGTTTCAGCC+AGG - chr5_1:16355886-16355905 Msa0720380:intron 45.0%
CAAAACACCAGTTTCAGCCA+GGG - chr5_1:16355887-16355906 Msa0720380:intron 45.0%
TTGTCTTTCAAACCCCTGGT+GGG - chr5_1:16355910-16355929 Msa0720380:intron 45.0%
! CTGCCATTTCTGCTTTGCAA+GGG - chr5_1:16355985-16356004 Msa0720380:intron 45.0%
CTTCCCTTGCAAAGCAGAAA+TGG + chr5_1:16355991-16356010 None:intergenic 45.0%
CATTTCTGCTTTGCAAGGGA+AGG - chr5_1:16355989-16356008 Msa0720380:intron 45.0%
!! TCGCCATGTAGCTATTTCTC+AGG - chr5_1:16356243-16356262 Msa0720380:intron 45.0%
!! CGCCATGTAGCTATTTCTCA+GGG - chr5_1:16356244-16356263 Msa0720380:intron 45.0%
!! AGAAGGTGGTGGACGTTTAT+TGG + chr5_1:16356684-16356703 None:intergenic 45.0%
! GATGCAGCAGCATTTTCCAA+AGG + chr5_1:16356960-16356979 None:intergenic 45.0%
GGCGTCAATTGAGATAGAAG+TGG - chr5_1:16356992-16357011 Msa0720380:intron 45.0%
GGCCTGAATTTCATATCCGA+AGG - chr5_1:16357124-16357143 Msa0720380:intron 45.0%
GCAGAGCTTCTTAGGGATAT+AGG - chr5_1:16357176-16357195 Msa0720380:intron 45.0%
AGCTTCTTAGGGATATAGGG+TGG - chr5_1:16357180-16357199 Msa0720380:intron 45.0%
AGGCAGATTCAAAGGGAGAA+CGG + chr5_1:16357403-16357422 None:intergenic 45.0%
AGAGGAGAGGCAGATTCAAA+GGG + chr5_1:16357410-16357429 None:intergenic 45.0%
!! GCTCTTTGAGGGTTTTGCTT+AGG - chr5_1:16357545-16357564 Msa0720380:intron 45.0%
TCTGCCTGCCTTAATCCTAT+TGG - chr5_1:16357597-16357616 Msa0720380:intron 45.0%
CCTATTGGCGGTATTTCATG+CGG - chr5_1:16357612-16357631 Msa0720380:intron 45.0%
CAACTACATGACACACTTGC+AGG + chr5_1:16357771-16357790 None:intergenic 45.0%
TGTGACTAATACGGCTATGG+TGG - chr5_1:16357806-16357825 Msa0720380:intron 45.0%
GGCTATGGTGGTAAGAATGT+GGG - chr5_1:16357818-16357837 Msa0720380:intron 45.0%
GTGGATGCATCATAAGGAGT+TGG - chr5_1:16357845-16357864 Msa0720380:intron 45.0%
ATGCATCATAAGGAGTTGGG+AGG - chr5_1:16357849-16357868 Msa0720380:intron 45.0%
TGCATCATAAGGAGTTGGGA+GGG - chr5_1:16357850-16357869 Msa0720380:intron 45.0%
GTCTGCAATATGCCAGTGAA+AGG - chr5_1:16357872-16357891 Msa0720380:intron 45.0%
ACTGATGCTTTCCCTTTCAC+TGG + chr5_1:16357887-16357906 None:intergenic 45.0%
GAGGCTTATGGAAAAGAGTG+GGG - chr5_1:16357924-16357943 Msa0720380:intron 45.0%
ATGGAAAAGAGTGGGGACAT+AGG - chr5_1:16357931-16357950 Msa0720380:intron 45.0%
TGGAAAAGAGTGGGGACATA+GGG - chr5_1:16357932-16357951 Msa0720380:intron 45.0%
AAATGGCACTACGGTGAACA+AGG - chr5_1:16358042-16358061 Msa0720380:intron 45.0%
GAGAGGATAAGGTGTGTGTA+TGG - chr5_1:16358118-16358137 Msa0720380:intron 45.0%
CTACTAAAGCGCGCTATTTG+TGG - chr5_1:16358349-16358368 Msa0720380:intron 45.0%
CGGAGCTTCAATAACACACT+TGG + chr5_1:16358600-16358619 None:intergenic 45.0%
TCTGTTACCTATCCCTTTGC+AGG - chr5_1:16358748-16358767 Msa0720380:CDS 45.0%
AGTAACTCCTGCAAAGGGAT+AGG + chr5_1:16358758-16358777 None:intergenic 45.0%
ATCCCTTTGCAGGAGTTACT+TGG - chr5_1:16358758-16358777 Msa0720380:CDS 45.0%
GTCCAAGTAACTCCTGCAAA+GGG + chr5_1:16358763-16358782 None:intergenic 45.0%
ACTTCTTCACTTCCAGCTTC+TGG + chr5_1:16358869-16358888 None:intergenic 45.0%
GAGTAGAAACCTCTACAAGC+TGG - chr5_1:16358973-16358992 Msa0720380:CDS 45.0%
GGTAAAACTCCAGCTTGTAG+AGG + chr5_1:16358985-16359004 None:intergenic 45.0%
!!! ATCTATTTTTATTTTATTTT+TGG - chr5_1:16354270-16354289 Msa0720380:intron 5.0%
!! AAAAATGAATATAAAAATAT+TGG - chr5_1:16355633-16355652 Msa0720380:intron 5.0%
! TAAGCGGGTAGTGATGATGC+CGG + chr5_1:16353537-16353556 None:intergenic 50.0%
GCCTTGGTCTCTTTCTAAGC+CGG - chr5_1:16353904-16353923 Msa0720380:CDS 50.0%
TCCGGCTTAGAAAGAGACCA+AGG + chr5_1:16353908-16353927 None:intergenic 50.0%
TGGAACTGTAACCGACGTTG+AGG - chr5_1:16353952-16353971 Msa0720380:intron 50.0%
TGGGAGTCATAAGGGTGGTT+TGG + chr5_1:16354565-16354584 None:intergenic 50.0%
CATGGCACTTCTCCTTCTTG+AGG - chr5_1:16354624-16354643 Msa0720380:intron 50.0%
GGGCACATGCGTACATGTAT+TGG + chr5_1:16354679-16354698 None:intergenic 50.0%
TCGGGGGAATCACAAATCAG+AGG - chr5_1:16354943-16354962 Msa0720380:intron 50.0%
GAAGTTATGTCACTCTGCGG+TGG - chr5_1:16355461-16355480 Msa0720380:intron 50.0%
TCTATGCATCCAACCTTGCG+TGG - chr5_1:16355820-16355839 Msa0720380:intron 50.0%
TCTTGCTTTCCACGCAAGGT+TGG + chr5_1:16355832-16355851 None:intergenic 50.0%
AAGACAACCCTGGCTGAAAC+TGG + chr5_1:16355897-16355916 None:intergenic 50.0%
AGGGGTTTGAAAGACAACCC+TGG + chr5_1:16355907-16355926 None:intergenic 50.0%
AGGGTTGTCTTTCAAACCCC+TGG - chr5_1:16355906-16355925 Msa0720380:intron 50.0%
GTTGTCTTTCAAACCCCTGG+TGG - chr5_1:16355909-16355928 Msa0720380:intron 50.0%
! GCTGCCATTTCTGCTTTGCA+AGG - chr5_1:16355984-16356003 Msa0720380:intron 50.0%
CTCAGCTATGTAGGTGCCTT+TGG - chr5_1:16356941-16356960 Msa0720380:CDS 50.0%
TGCTGCATCACAATGACGCT+AGG - chr5_1:16356971-16356990 Msa0720380:intron 50.0%
ATTCAGGGGCAGAGCTTCTT+AGG - chr5_1:16357168-16357187 Msa0720380:intron 50.0%
TTCAGGGGCAGAGCTTCTTA+GGG - chr5_1:16357169-16357188 Msa0720380:intron 50.0%
CAATGCAGCGCATACGCAAA+GGG + chr5_1:16357329-16357348 None:intergenic 50.0%
ACAATGCAGCGCATACGCAA+AGG + chr5_1:16357330-16357349 None:intergenic 50.0%
CAGAGGAGAGGCAGATTCAA+AGG + chr5_1:16357411-16357430 None:intergenic 50.0%
GCCTGCCTTAATCCTATTGG+CGG - chr5_1:16357600-16357619 Msa0720380:intron 50.0%
ACCGCCAATAGGATTAAGGC+AGG + chr5_1:16357604-16357623 None:intergenic 50.0%
CCGCATGAAATACCGCCAAT+AGG + chr5_1:16357615-16357634 None:intergenic 50.0%
CGGCTATGGTGGTAAGAATG+TGG - chr5_1:16357817-16357836 Msa0720380:intron 50.0%
TGGTGGTAAGAATGTGGGCT+TGG - chr5_1:16357823-16357842 Msa0720380:intron 50.0%
TGGTAAGAATGTGGGCTTGG+TGG - chr5_1:16357826-16357845 Msa0720380:intron 50.0%
!! GGCTTGGTGGATGCATCATA+AGG - chr5_1:16357839-16357858 Msa0720380:intron 50.0%
AAAGAGTGGGGACATAGGGT+TGG - chr5_1:16357936-16357955 Msa0720380:intron 50.0%
CGTCCAAGTAACTCCTGCAA+AGG + chr5_1:16358764-16358783 None:intergenic 50.0%
AGCAACGAAATGCGACGAGG+TGG + chr5_1:16353569-16353588 None:intergenic 55.0%
GGAAGCAACGAAATGCGACG+AGG + chr5_1:16353572-16353591 None:intergenic 55.0%
GGATTCAAGAGAGGAGGCTC+AGG - chr5_1:16354209-16354228 Msa0720380:intron 55.0%
ACCCTTATGACTCCCACCCA+GGG - chr5_1:16354569-16354588 Msa0720380:intron 55.0%
TCCCTGGGTGGGAGTCATAA+GGG + chr5_1:16354573-16354592 None:intergenic 55.0%
TCTGGGTTACACACCTCCCT+GGG + chr5_1:16354588-16354607 None:intergenic 55.0%
ATCTGGGTTACACACCTCCC+TGG + chr5_1:16354589-16354608 None:intergenic 55.0%
! CATACATGTGTGGGGGCACA+GGG + chr5_1:16354919-16354938 None:intergenic 55.0%
! ACATACATGTGTGGGGGCAC+AGG + chr5_1:16354920-16354939 None:intergenic 55.0%
ACTCTGCGGTGGCATGTAGT+AGG - chr5_1:16355472-16355491 Msa0720380:intron 55.0%
ACCCAGCAGATTTCCCACCA+GGG + chr5_1:16355926-16355945 None:intergenic 55.0%
TACCCAGCAGATTTCCCACC+AGG + chr5_1:16355927-16355946 None:intergenic 55.0%
GGTGGGAAATCTGCTGGGTA+TGG - chr5_1:16355927-16355946 Msa0720380:intron 55.0%
! TAGACGGAGGGTGCAGTACT+GGG + chr5_1:16357271-16357290 None:intergenic 55.0%
AAACGCAGTGGGTAGACGGA+GGG + chr5_1:16357283-16357302 None:intergenic 55.0%
ACGCAAACGCAGTGGGTAGA+CGG + chr5_1:16357287-16357306 None:intergenic 55.0%
GCATACGCAAAGGGTCAGAG+TGG + chr5_1:16357320-16357339 None:intergenic 55.0%
TGGCACTACGGTGAACAAGG+AGG - chr5_1:16358045-16358064 Msa0720380:intron 55.0%
CTGGGTGGGAGTCATAAGGG+TGG + chr5_1:16354570-16354589 None:intergenic 60.0%
CACCCTTATGACTCCCACCC+AGG - chr5_1:16354568-16354587 Msa0720380:intron 60.0%
CTCCCTGGGTGGGAGTCATA+AGG + chr5_1:16354574-16354593 None:intergenic 60.0%
CTTATGACTCCCACCCAGGG+AGG - chr5_1:16354572-16354591 Msa0720380:intron 60.0%
GGTTACACACCTCCCTGGGT+GGG + chr5_1:16354584-16354603 None:intergenic 60.0%
TTAGGAGTGGGAGCTGGAGG+AGG + chr5_1:16355783-16355802 None:intergenic 60.0%
TCCTCCAGCTCCCACTCCTA+AGG - chr5_1:16355782-16355801 Msa0720380:intron 60.0%
TCCTTAGGAGTGGGAGCTGG+AGG + chr5_1:16355786-16355805 None:intergenic 60.0%
GCTTCCTTAGGAGTGGGAGC+TGG + chr5_1:16355789-16355808 None:intergenic 60.0%
ACCCCTGGTGGGAAATCTGC+TGG - chr5_1:16355921-16355940 Msa0720380:intron 60.0%
CCCAGCAGATTTCCCACCAG+GGG + chr5_1:16355925-16355944 None:intergenic 60.0%
CCCCTGGTGGGAAATCTGCT+GGG - chr5_1:16355922-16355941 Msa0720380:intron 60.0%
! AGACGGAGGGTGCAGTACTG+GGG + chr5_1:16357270-16357289 None:intergenic 60.0%
! GTAGACGGAGGGTGCAGTAC+TGG + chr5_1:16357272-16357291 None:intergenic 60.0%
CAAACGCAGTGGGTAGACGG+AGG + chr5_1:16357284-16357303 None:intergenic 60.0%
CGACAGGACGCAAACGCAGT+GGG + chr5_1:16357294-16357313 None:intergenic 60.0%
ACGACAGGACGCAAACGCAG+TGG + chr5_1:16357295-16357314 None:intergenic 60.0%
AGGGTCAGAGTGGTCACGAC+AGG + chr5_1:16357310-16357329 None:intergenic 60.0%
GGGTTACACACCTCCCTGGG+TGG + chr5_1:16354585-16354604 None:intergenic 65.0%
ACGAAGCACGCGCAGAGGAG+AGG + chr5_1:16357423-16357442 None:intergenic 65.0%
TCTCCTCTGCGCGTGCTTCG+TGG - chr5_1:16357422-16357441 Msa0720380:intron 65.0%
GAACCACGAAGCACGCGCAG+AGG + chr5_1:16357428-16357447 None:intergenic 65.0%
GACGACGCGCAACCAGAAGC+TGG - chr5_1:16358854-16358873 Msa0720380:CDS 65.0%
GGAGCTGGAGGAGGTGGAGG+AGG + chr5_1:16355774-16355793 None:intergenic 70.0%
GTGGGAGCTGGAGGAGGTGG+AGG + chr5_1:16355777-16355796 None:intergenic 70.0%
GGAGTGGGAGCTGGAGGAGG+TGG + chr5_1:16355780-16355799 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 16353501 16359199 16353501 ID=Msa0720380;Name=Msa0720380
chr5_1 mRNA 16353501 16359199 16353501 ID=Msa0720380-mRNA-1;Parent=Msa0720380;Name=Msa0720380-mRNA-1;_AED=0.12;_eAED=0.12;_QI=95|1|1|1|1|1|4|271|308
chr5_1 exon 16353501 16353930 16353501 ID=Msa0720380-mRNA-1:exon:6245;Parent=Msa0720380-mRNA-1
chr5_1 exon 16356690 16356980 16356690 ID=Msa0720380-mRNA-1:exon:6244;Parent=Msa0720380-mRNA-1
chr5_1 exon 16358443 16358541 16358443 ID=Msa0720380-mRNA-1:exon:6243;Parent=Msa0720380-mRNA-1
chr5_1 exon 16358727 16359199 16358727 ID=Msa0720380-mRNA-1:exon:6242;Parent=Msa0720380-mRNA-1
chr5_1 five_prime_UTR 16359105 16359199 16359105 ID=Msa0720380-mRNA-1:five_prime_utr;Parent=Msa0720380-mRNA-1
chr5_1 CDS 16358727 16359104 16358727 ID=Msa0720380-mRNA-1:cds;Parent=Msa0720380-mRNA-1
chr5_1 CDS 16358443 16358541 16358443 ID=Msa0720380-mRNA-1:cds;Parent=Msa0720380-mRNA-1
chr5_1 CDS 16356690 16356980 16356690 ID=Msa0720380-mRNA-1:cds;Parent=Msa0720380-mRNA-1
chr5_1 CDS 16353772 16353930 16353772 ID=Msa0720380-mRNA-1:cds;Parent=Msa0720380-mRNA-1
chr5_1 three_prime_UTR 16353501 16353771 16353501 ID=Msa0720380-mRNA-1:three_prime_utr;Parent=Msa0720380-mRNA-1
Gene Sequence

>Msa0720380

ATGGCAACGTTAGAATCAACCATAACTGTATTCACACATCAACGTTTCTCAAATAACAACAACTACCATTTCCTAGCAAAATCACCAGATTCCATAAAACTCAATGCTTCAACTTCAATCTCTTCTTCTTCTTTTTCCCTTTTCTCTCACAATAACCACAAACTTCACTTTTCTTCTTCCTCTTCCAAATCCAAAACACTCTGCTACGCTTTACAAGAGGTAACAGAAGCAGCAGCAACAACTGAAGAAGATGAAGCAAAAACAGAGACATTGAACAACGTTAAGAAGAACCTCGTTGTCTTTAACTTGCCTTGGTCTCTTTCTAAGCCGGATATCAAGGATCTCTTCGCTCAATGTGGAACTGTAACCGACGTTGAGATTGTAAAGAGCAAAGATGGGAAGGGAAAAGGTTATACATTTGTTACTATGGATTCAAGAGAGGAGGCTCAGGCTGCTGTCGATAAATTTAATGCAGCTGAAATATCAGGCCGGATAGTAAGGGTAGAGTTTGCAAAGGGATTTAAGAAACCTCCTCCACCTCCTCCAGCTCCCACTCCTAAGGAAGCACGTTATGTAATCTATGCATCCAACCTTGCGTGGAAAGCAAGATCTACACATCTCAGAGACATCTTCACTGAGAATTTCAAAACACCAGTTTCAGCCAGGGTTGTCTTTCAAACCCCTGGTGGGAAATCTGCTGGGTATGGATTTGTTTCTTATCATACGGAGGAGGAAGCAGAAGCTGCCATTTCTGCTTTGCAAGGGAAGGAGTTACTTGGACGACCACTTCTCGTAAAAATAAGTGAAAAAAAAGTTAAAGAAGCTGGAAGTGAAGTAGTTGAAGAGAAAGTTGACGACGCGCAACCAGAAGCTGGAAGTGAAGAAGTTGAAGAGAAAGTTGATGACGCTCAACCAGATGAGTCATAA

Protein sequence

>Msa0720380

MATLESTITVFTHQRFSNNNNYHFLAKSPDSIKLNASTSISSSSFSLFSHNNHKLHFSSSSSKSKTLCYALQEVTEAAATTEEDEAKTETLNNVKKNLVVFNLPWSLSKPDIKDLFAQCGTVTDVEIVKSKDGKGKGYTFVTMDSREEAQAAVDKFNAAEISGRIVRVEFAKGFKKPPPPPPAPTPKEARYVIYASNLAWKARSTHLRDIFTENFKTPVSARVVFQTPGGKSAGYGFVSYHTEEEAEAAISALQGKELLGRPLLVKISEKKVKEAGSEVVEEKVDDAQPEAGSEEVEEKVDDAQPDES*