AlfalfaGEDB | Msa0869090

M. sativa cultivar zhongmu-4 / Msa0869090

KEGG: K02935
GO: GO:0000311 GO:0000313 GO:0000315 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009295 GO:0009506 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009547 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0030054 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034641 GO:0034645 GO:0042221 GO:0042651 GO:0042742 GO:0043043 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0055044 GO:0071704 GO:0098542 GO:1901564 GO:1901566 GO:1901576 GO:1990904
PFAM: PF16320.8

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0869090	XP_013450782.1	96.685	181	5	1	1	180	1	181	1.31e-115	335

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0869090	sp\|P02398\|RK12_SPIOL	62.567	187	58	5	4	179	3	188	6.96e-54	172

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0869090	A0A072U545	96.685	181	5	1	1	180	1	181	6.27e-116	335

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa0869090	0.811464	6.909749e-51	-8.615850e-47
Msa0001420	Msa0869090	0.863407	2.545324e-64	-8.615850e-47
Msa0001510	Msa0869090	0.858463	8.095213e-63	-8.615850e-47
Msa0001540	Msa0869090	0.880517	5.145053e-70	-8.615850e-47
Msa0002060	Msa0869090	0.810325	1.219482e-50	-8.615850e-47
Msa0002690	Msa0869090	0.860312	2.254458e-63	-8.615850e-47
Msa0002700	Msa0869090	0.855523	5.960270e-62	-8.615850e-47
Msa0003340	Msa0869090	0.811190	7.925517e-51	-8.615850e-47
Msa0004180	Msa0869090	0.862801	3.916858e-64	-8.615850e-47
Msa0005190	Msa0869090	0.806797	6.909882e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0869090	MtrunA17_Chr6g0450121	96.685	181	5	1	1	180	1	181	1.21e-119	335
Msa0869090	MtrunA17_Chr8g0372561	32.984	191	100	5	14	179	7	194	3.07e-19	80.9
Msa0869090	MtrunA17_Chr7g0234831	35.878	131	74	2	59	179	86	216	1.73e-14	68.6
Msa0869090	MtrunA17_Chr2g0293431	32.624	141	85	3	47	177	12	152	5.43e-14	67.0
Msa0869090	MtrunA17_Chr2g0293341	49.254	67	34	0	109	175	119	185	1.20e-13	65.9
Msa0869090	MtrunA17_Chr2g0310131	33.588	131	77	2	59	179	85	215	1.72e-12	63.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0869090	AT3G27850.1	59.783	184	68	3	1	180	6	187	1.03e-53	169
Msa0869090	AT3G27830.2	64.596	161	49	3	28	180	31	191	3.05e-52	166
Msa0869090	AT3G27830.1	64.596	161	49	3	28	180	31	191	3.05e-52	166
Msa0869090	AT3G27840.1	50.898	167	64	3	31	179	26	192	6.62e-44	144
Msa0869090	AT4G36420.1	36.301	146	79	3	48	179	33	178	1.34e-18	79.3
Msa0869090	AT4G37660.1	32.877	146	96	1	36	179	21	166	5.31e-14	66.6
Msa0869090	AT3G06040.3	35.200	125	78	1	54	175	57	181	6.79e-14	67.0
Msa0869090	AT3G06040.2	35.200	125	78	1	54	175	57	181	6.79e-14	67.0
Msa0869090	AT3G06040.1	35.200	125	78	1	54	175	57	181	6.79e-14	67.0
Msa0869090	AT1G70190.2	36.029	136	71	3	59	179	73	207	5.64e-13	64.7

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Find 49 sgRNAs with CRISPR-Local

Find 65 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTTCGGCGGCGGGAGCAG+CGG	0.438188	6_1:+2911889	None:intergenic
AAGAAACAACTTGAAGCTGC+AGG	0.564071	6_1:-2911680	Msa0869090:CDS
ACACCTTCTTTAAATTTCTT+CGG	0.390394	6_1:+2911728	None:intergenic
ACGGAGACGAGTGCGGTGGT+GGG	0.493453	6_1:+2912057	None:intergenic
ACTACTGCAACTTCGGCGGC+GGG	0.506435	6_1:+2911881	None:intergenic
AGATGGAGAGGGGTTTGGAG+GGG	0.422416	6_1:+2912083	None:intergenic
AGATGGGACGGAGACGAGTG+CGG	0.648615	6_1:+2912050	None:intergenic
AGCAGCGGCGACGGCGGCGG+CGG	0.240866	6_1:+2911904	None:intergenic
AGTCGACGAGGTCTTTGGCT+TGG	0.457705	6_1:+2911969	None:intergenic
CGAAACCCTAAATTAAGCAA+TGG	0.594710	6_1:+2911646	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCAATCACAACATCGAATT+CGG	+	chr6_1:2911992-2912011	None:intergenic	30.0%
TTGCCGAAGAAATTTAAAGA+AGG	-	chr6_1:2912105-2912124	Msa0869090:CDS	30.0%
GCCACTGAAATAGAAAAACT+CGG	-	chr6_1:2911817-2911836	Msa0869090:CDS	35.0%
GGTTGAGATAGTTGTGAAAG+CGG	+	chr6_1:2911677-2911696	None:intergenic	40.0%
GACTACCTCCAAGAAAAACT+CGG	-	chr6_1:2911886-2911905	Msa0869090:CDS	40.0%
TTCTTCGACTACTGCAACTT+CGG	+	chr6_1:2911965-2911984	None:intergenic	40.0%
GAAGCGAAGGAATTGATTGA+AGG	-	chr6_1:2912081-2912100	Msa0869090:CDS	40.0%
AAGAAACAACTTGAAGCTGC+AGG	-	chr6_1:2912156-2912175	Msa0869090:CDS	40.0%
GGGAAATTGAGAGTGGAGAT+TGG	+	chr6_1:2911736-2911755	None:intergenic	45.0%
TTTGGAGGGGAAATTGAGAG+TGG	+	chr6_1:2911743-2911762	None:intergenic	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	2911658	2912200	2911658	ID=Msa0869090;Name=Msa0869090
chr6_1	mRNA	2911658	2912200	2911658	ID=Msa0869090-mRNA-1;Parent=Msa0869090;Name=Msa0869090-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|180
chr6_1	exon	2911658	2912200	2911658	ID=Msa0869090-mRNA-1:exon:924;Parent=Msa0869090-mRNA-1
chr6_1	CDS	2911658	2912200	2911658	ID=Msa0869090-mRNA-1:cds;Parent=Msa0869090-mRNA-1

Gene Sequence

>Msa0869090

ATGGCATTATCAACAACCGCTTTCACAACTATCTCAACCCTCACACTTTCTCACCACACCCCCCTCTCAAAAAAACCAATCTCCACTCTCAATTTCCCCTCCAAACCCCTCTCCATCTCCCCCCACCACCGCACTCGTCTCCGTCCCATCTCCGCCGTGGCCACTGAAATAGAAAAACTCGGCAACGACATCTCCGACCTCACTCTCTCCCAAGCCAAAGACCTCGTCGACTACCTCCAAGAAAAACTCGGCGTCACTGCCGCTTCCTTCGCTCCCGCCGCCGCCGTCGCCGCTGCTCCCGCCGCCGAAGTTGCAGTAGTCGAAGAAAAGACCGAATTCGATGTTGTGATTGAAGAAGTTCCTAGTAACGCGAGAATTGCGGCGATTAAAGCGGTTAGAGCTTTGACGAGTTTAGGATTGAAAGAAGCGAAGGAATTGATTGAAGGTTTGCCGAAGAAATTTAAAGAAGGTGTGAGTAAAGATGAAGCTGATGATGCTAAGAAACAACTTGAAGCTGCAGGTGCTAAAGTTACCATTGCTTAA

Protein sequence

>Msa0869090

MALSTTAFTTISTLTLSHHTPLSKKPISTLNFPSKPLSISPHHRTRLRPISAVATEIEKLGNDISDLTLSQAKDLVDYLQEKLGVTAASFAPAAAVAAAPAAEVAVVEEKTEFDVVIEEVPSNARIAAIKAVRALTSLGLKEAKELIEGLPKKFKEGVSKDEADDAKKQLEAAGAKVTIA*