AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0368430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0368430 MtrunA17_Chr3g0112251 96.429 224 8 0 1 224 1 224 2.24e-156 432
Msa0368430 MtrunA17_Chr5g0398981 37.398 123 71 3 101 223 106 222 2.10e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0368430 AT2G44920.2 86.286 175 24 0 50 224 50 224 1.68e-107 309
Msa0368430 AT2G44920.1 86.232 138 19 0 50 187 50 187 1.78e-79 237
Msa0368430 AT1G12250.2 34.848 132 75 4 97 223 41 166 1.20e-11 62.0
Msa0368430 AT1G12250.1 34.848 132 75 4 97 223 115 240 1.67e-11 62.8
Msa0368430 AT5G55000.2 37.838 111 65 1 94 200 174 284 4.16e-11 61.6
Msa0368430 AT5G55000.1 38.318 107 62 1 94 196 174 280 7.49e-11 60.8

Find 56 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTCCTATCTCTCTGTTTC+TGG 0.179667 3_1:+65077792 Msa0368430:CDS
ACTAGGGGACAAGATCTTTC+TGG 0.219620 3_1:+65078334 Msa0368430:CDS
AAATTTGAGCAATGCTAATT+TGG 0.246193 3_1:+65079347 Msa0368430:CDS
CATACCGGCGCCTGTAATAT+TGG 0.263857 3_1:-65079409 None:intergenic
TTTAAAGGTGCAAAATTGTT+AGG 0.294153 3_1:+65078554 Msa0368430:CDS
AAAATTGGCTTGACGCAGTA+TGG 0.314554 3_1:-65078534 None:intergenic
TTCTTCGATGCTGATTTAAC+AGG 0.320279 3_1:+65078584 Msa0368430:CDS
TTTAAGGGATCCAATATTAC+AGG 0.328394 3_1:+65079399 Msa0368430:CDS
TGATCCTGCACTTGCATTCA+AGG 0.342254 3_1:+65078012 Msa0368430:CDS
GATGCTTGGTGAGTTTGCTT+TGG 0.375494 3_1:-65077908 None:intergenic
TAAGAGATGGTGATGAGGTT+TGG 0.381918 3_1:-65077737 None:intergenic
CATATGGTCAAGGAGTTACT+AGG 0.385923 3_1:+65078317 Msa0368430:CDS
CTAGTAACTCCTTGACCATA+TGG 0.403791 3_1:-65078316 None:intergenic
CATGTCAGGTGCTGATCTTT+CGG 0.407019 3_1:+65078699 Msa0368430:intron
TTGGAAGGTGCACTTGTAAC+GGG 0.417101 3_1:+65079366 Msa0368430:CDS
CTAGGGGACAAGATCTTTCT+GGG 0.423220 3_1:+65078335 Msa0368430:CDS
CGAACCAGAAACAGAGAGAT+AGG 0.437434 3_1:-65077796 None:intergenic
GACAGAGTGAACTCATCAAC+TGG 0.437998 3_1:+65081561 Msa0368430:intron
AACCTCATCACCATCTCTTA+AGG 0.447203 3_1:+65077740 Msa0368430:CDS
TCACGTTGATCTTCTCTTAG+CGG 0.462155 3_1:-65081431 None:intergenic
AGAGATAGGAGTTGGTGAGC+AGG 0.464069 3_1:-65077782 None:intergenic
ATGAAGGGTGGAGGGCCATA+TGG 0.474954 3_1:+65078301 Msa0368430:intron
TTACCTTTGTCACATTTGCC+AGG 0.489767 3_1:-65078750 None:intergenic
AGTTGGTGAGCAGGTTGAAG+AGG 0.491050 3_1:-65077773 None:intergenic
GGTGAGCAGGTTGAAGAGGA+AGG 0.497485 3_1:-65077769 None:intergenic
CAGAAACTCACATTATCATT+CGG 0.504813 3_1:+65077932 Msa0368430:CDS
TTTGGAAGGTGCACTTGTAA+CGG 0.505123 3_1:+65079365 Msa0368430:CDS
TTGAGCAATGCTAATTTGGA+AGG 0.506866 3_1:+65079351 Msa0368430:CDS
ATCAATCTATCATGCGGATG+TGG 0.515784 3_1:-65077630 None:intergenic
TAAATCAGCATCGAAGAAGC+TGG 0.535284 3_1:-65078579 None:intergenic
TACCTCTGCAAAATTGCTGA+TGG 0.538634 3_1:+65081455 Msa0368430:CDS
TGGTGATGAATGAAGGGTGG+AGG 0.551341 3_1:+65078292 Msa0368430:intron
AATTGCACAGCAATGTATCA+CGG 0.554496 3_1:-65081593 None:intergenic
ACCTCTGCAAAATTGCTGAT+GGG 0.554917 3_1:+65081456 Msa0368430:CDS
AGAAACAGAGAGATAGGAGT+TGG 0.558423 3_1:-65077790 None:intergenic
TGATGAGGTTTGGAAGTTGA+AGG 0.562107 3_1:-65077727 None:intergenic
ATATGGTCAAGGAGTTACTA+GGG 0.565044 3_1:+65078318 Msa0368430:CDS
TATACCTTGAATGCAAGTGC+AGG 0.570494 3_1:-65078016 None:intergenic
TATAATGTATATCATGTCAA+AGG 0.577746 3_1:+65081686 Msa0368430:three_prime_UTR
ATTGCACAGCAATGTATCAC+GGG 0.579298 3_1:-65081592 None:intergenic
GGATCCAATATTACAGGCGC+CGG 0.582010 3_1:+65079405 Msa0368430:CDS
GGTGGAGGGCCATATGGTCA+AGG 0.584439 3_1:+65078307 Msa0368430:CDS
TACCTTTGTCACATTTGCCA+GGG 0.587787 3_1:-65078749 None:intergenic
TTCCCTGGCAAATGTGACAA+AGG 0.601317 3_1:+65078747 Msa0368430:CDS
ATGCGGATGTGGAATTATTG+TGG 0.607522 3_1:-65077619 None:intergenic
ATGTGAGTTTCTGAGATGCT+TGG 0.612261 3_1:-65077922 None:intergenic
CTTTCTGGGAAAGATTTCAG+TGG 0.615907 3_1:+65078349 Msa0368430:CDS
TTTGGAAGTTGAAGGCAAAG+AGG 0.617513 3_1:-65077719 None:intergenic
GGTGATGAATGAAGGGTGGA+GGG 0.622244 3_1:+65078293 Msa0368430:intron
CATCAAGCAAGACTTCAAAA+CGG 0.635311 3_1:+65078381 Msa0368430:CDS
AAGGTGTTGACCTTAAGAGA+TGG 0.643063 3_1:-65077750 None:intergenic
TAACTGTAACTGTACAACAA+TGG 0.644974 3_1:+65077681 Msa0368430:exon
GACCTTAAGAGATGGTGATG+AGG 0.653487 3_1:-65077742 None:intergenic
ACACATATCAATCTATCATG+CGG 0.666603 3_1:-65077636 None:intergenic
GCACAGCAATGTATCACGGG+TGG 0.671947 3_1:-65081589 None:intergenic
TATGGTCAAGGAGTTACTAG+GGG 0.721516 3_1:+65078319 Msa0368430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTAAGAAATTAAATTAAAA+TGG + chr3_1:65079085-65079104 Msa0368430:intron 10.0%
!!! TATAGTATTTTTATATAAGT+TGG - chr3_1:65079623-65079642 None:intergenic 10.0%
!! AACTTATATAAAAATACTAT+AGG + chr3_1:65079622-65079641 Msa0368430:intron 10.0%
!!! TTTTTGAAACAAAATATTAA+AGG + chr3_1:65080558-65080577 Msa0368430:intron 10.0%
!!! ATGTTTTGTTATTTATTTAT+TGG + chr3_1:65081207-65081226 Msa0368430:intron 10.0%
!! ATATATATTATATGTCTAAA+TGG + chr3_1:65081483-65081502 Msa0368430:intron 10.0%
!!! TTTTTTGGTTAACAAATAAT+GGG + chr3_1:65078262-65078281 Msa0368430:intron 15.0%
!! GTTAATAAACTGAATTATAT+TGG - chr3_1:65078868-65078887 None:intergenic 15.0%
!! TATAAGTATAACTGTTTATT+AGG - chr3_1:65079012-65079031 None:intergenic 15.0%
!! TTCTTCAAATAATATAACAA+AGG - chr3_1:65079039-65079058 None:intergenic 15.0%
!!! TTAATTTCTTAACATTCTTT+TGG - chr3_1:65079078-65079097 None:intergenic 15.0%
!! TAGTTATGTTAATTAGTTAA+AGG + chr3_1:65079562-65079581 Msa0368430:intron 15.0%
!!! TATTAAATCTAATTCAAGTT+GGG - chr3_1:65080170-65080189 None:intergenic 15.0%
!! ATATTAAATCTAATTCAAGT+TGG - chr3_1:65080171-65080190 None:intergenic 15.0%
!! AACTTGAATTAGATTTAATA+TGG + chr3_1:65080170-65080189 Msa0368430:intron 15.0%
!! ACAATTGAAGAAAAATTATA+AGG - chr3_1:65080720-65080739 None:intergenic 15.0%
!!! CAAATATTTTGTTGTATTTT+AGG + chr3_1:65081739-65081758 Msa0368430:three_prime_UTR 15.0%
!!! GTTAAAGTTTTGTTCTTTTT+TGG + chr3_1:65078247-65078266 Msa0368430:intron 20.0%
!!! CTTTTTTGGTTAACAAATAA+TGG + chr3_1:65078261-65078280 Msa0368430:intron 20.0%
!!! TTTATTAGGTTGTTGAATAA+TGG - chr3_1:65078998-65079017 None:intergenic 20.0%
!! ATATTATTCTATGCTACTAT+TGG + chr3_1:65079445-65079464 Msa0368430:intron 20.0%
!! TTACTAATTCTATTAAGATC+AGG - chr3_1:65079749-65079768 None:intergenic 20.0%
!!! AGTAAACTTGCAATAAATTT+TGG + chr3_1:65079992-65080011 Msa0368430:intron 20.0%
!! ATAAGAAAGTAAATTCAATG+TGG - chr3_1:65081109-65081128 None:intergenic 20.0%
!! ACATTGAATTTACTTTCTTA+TGG + chr3_1:65081108-65081127 Msa0368430:intron 20.0%
!! TATAATGTATATCATGTCAA+AGG + chr3_1:65081686-65081705 Msa0368430:three_prime_UTR 20.0%
! AAACATTCATATTGAAGTGT+TGG - chr3_1:65078062-65078081 None:intergenic 25.0%
! CTTCAATATGAATGTTTATC+TGG + chr3_1:65078065-65078084 Msa0368430:intron 25.0%
!!! CAATTTTGCACCTTTAAAAT+TGG - chr3_1:65078552-65078571 None:intergenic 25.0%
!! TTTAAAGGTGCAAAATTGTT+AGG + chr3_1:65078554-65078573 Msa0368430:CDS 25.0%
!! CATTCATTGTGATACATTTT+TGG - chr3_1:65078621-65078640 None:intergenic 25.0%
!! TTTTTCATGCTCATTATGAT+AGG + chr3_1:65078777-65078796 Msa0368430:intron 25.0%
! ACTGAATTATATTGGACTAA+GGG - chr3_1:65078860-65078879 None:intergenic 25.0%
! AACTGAATTATATTGGACTA+AGG - chr3_1:65078861-65078880 None:intergenic 25.0%
! ATAACAACAAAGCAAAGAAA+AGG - chr3_1:65078898-65078917 None:intergenic 25.0%
!!! ATTAAGCAAAGTTTTGAACA+AGG - chr3_1:65078924-65078943 None:intergenic 25.0%
! TCAGCTAAATTAATACTTGT+AGG - chr3_1:65079234-65079253 None:intergenic 25.0%
! TTGTTAATTACAGTGATTTG+AGG - chr3_1:65079270-65079289 None:intergenic 25.0%
! CAACACAATAAATTGAGAAA+TGG - chr3_1:65079306-65079325 None:intergenic 25.0%
! CATTTCTCAATTTATTGTGT+TGG + chr3_1:65079304-65079323 Msa0368430:intron 25.0%
! AAATTTGAGCAATGCTAATT+TGG + chr3_1:65079347-65079366 Msa0368430:CDS 25.0%
!! ATGCTACTATTGGAATTTTA+AGG + chr3_1:65079455-65079474 Msa0368430:intron 25.0%
!! TGCTACTATTGGAATTTTAA+GGG + chr3_1:65079456-65079475 Msa0368430:intron 25.0%
!!! ATTAGCTTTCAAATCATTGA+AGG + chr3_1:65079504-65079523 Msa0368430:intron 25.0%
!!! TATTGACATAGAACTGATTT+TGG + chr3_1:65079590-65079609 Msa0368430:intron 25.0%
!! TAAAAATACTATAGGAGCAT+AGG + chr3_1:65079630-65079649 Msa0368430:intron 25.0%
!! AAAAATACTATAGGAGCATA+GGG + chr3_1:65079631-65079650 Msa0368430:intron 25.0%
! TATTAAGATCAGGATTTACA+GGG - chr3_1:65079739-65079758 None:intergenic 25.0%
! GAATGAGAATGAATAAAACT+TGG - chr3_1:65079775-65079794 None:intergenic 25.0%
! ACCAGAAATTTCATCAAATT+AGG + chr3_1:65079800-65079819 Msa0368430:intron 25.0%
! TCCTAATTTGATGAAATTTC+TGG - chr3_1:65079804-65079823 None:intergenic 25.0%
! TAACGAACATATTTCGAATA+TGG - chr3_1:65079830-65079849 None:intergenic 25.0%
! GAAGGTAATAACAAAATGAA+GGG - chr3_1:65079965-65079984 None:intergenic 25.0%
! TATTGCAAGTTTACTAGTTA+CGG - chr3_1:65079987-65080006 None:intergenic 25.0%
! AAATTCAAAACCTTGCTTAA+GGG - chr3_1:65080083-65080102 None:intergenic 25.0%
! GTGTTAGTAGAGAAAATAAA+CGG + chr3_1:65080105-65080124 Msa0368430:intron 25.0%
!!! TTATTTTTTATGGTTCCACA+TGG + chr3_1:65080209-65080228 Msa0368430:intron 25.0%
! TTATTCTGATCTATAACCTT+CGG - chr3_1:65080247-65080266 None:intergenic 25.0%
! ATCAAAATTTAAGGATGAGT+TGG + chr3_1:65080417-65080436 Msa0368430:intron 25.0%
! TCAAAATTTAAGGATGAGTT+GGG + chr3_1:65080418-65080437 Msa0368430:intron 25.0%
! ATAATAGAACTAGCAATTAG+GGG - chr3_1:65080490-65080509 None:intergenic 25.0%
! CATAATAGAACTAGCAATTA+GGG - chr3_1:65080491-65080510 None:intergenic 25.0%
! ACATAATAGAACTAGCAATT+AGG - chr3_1:65080492-65080511 None:intergenic 25.0%
!!! ATATTTTGAGTTTGAGTACA+TGG + chr3_1:65080635-65080654 Msa0368430:intron 25.0%
! ACTGAATCAAAATTTAGCAT+TGG + chr3_1:65080831-65080850 Msa0368430:intron 25.0%
! CTGAATCAAAATTTAGCATT+GGG + chr3_1:65080832-65080851 Msa0368430:intron 25.0%
! TTACAAGAGAAAACTATACT+GGG - chr3_1:65080902-65080921 None:intergenic 25.0%
! TTTACAAGAGAAAACTATAC+TGG - chr3_1:65080903-65080922 None:intergenic 25.0%
! ACTCTATATCTAAGCTATTA+TGG + chr3_1:65080968-65080987 Msa0368430:intron 25.0%
! TGTTTAGTAATGTGTAGAAA+AGG - chr3_1:65080995-65081014 None:intergenic 25.0%
!!! TATTTGCTTTTCTTTCACAA+TGG - chr3_1:65081725-65081744 None:intergenic 25.0%
ACACATATCAATCTATCATG+CGG - chr3_1:65077639-65077658 None:intergenic 30.0%
TAACTGTAACTGTACAACAA+TGG + chr3_1:65077681-65077700 Msa0368430:exon 30.0%
CAGAAACTCACATTATCATT+CGG + chr3_1:65077932-65077951 Msa0368430:CDS 30.0%
TACAAACACTAACACAAACA+CGG - chr3_1:65078170-65078189 None:intergenic 30.0%
!! TGGTTAACAAATAATGGGTA+TGG + chr3_1:65078267-65078286 Msa0368430:intron 30.0%
!! AACAAATAATGGGTATGGTT+TGG + chr3_1:65078272-65078291 Msa0368430:intron 30.0%
!! TTTAAGTTGATTTGATGACG+CGG + chr3_1:65078440-65078459 Msa0368430:intron 30.0%
!!! TTGTGATACATTTTTGGTGT+TGG - chr3_1:65078615-65078634 None:intergenic 30.0%
ATGAATGTAGTATACACACA+TGG + chr3_1:65078634-65078653 Msa0368430:intron 30.0%
TCATTATGATAGGATCTGAT+GGG + chr3_1:65078787-65078806 Msa0368430:intron 30.0%
TAATAGCAGTGATTGAAAGT+AGG + chr3_1:65078940-65078959 Msa0368430:intron 30.0%
AATAGCAGTGATTGAAAGTA+GGG + chr3_1:65078941-65078960 Msa0368430:intron 30.0%
ATGGCAAATTAGAAGATTCA+AGG + chr3_1:65079104-65079123 Msa0368430:intron 30.0%
TGGCAAATTAGAAGATTCAA+GGG + chr3_1:65079105-65079124 Msa0368430:intron 30.0%
!!! CACTACAAGATTTTTTTGAC+AGG - chr3_1:65079172-65079191 None:intergenic 30.0%
! AACGGGAAATACATCTTTTA+AGG + chr3_1:65079383-65079402 Msa0368430:CDS 30.0%
! ACGGGAAATACATCTTTTAA+GGG + chr3_1:65079384-65079403 Msa0368430:CDS 30.0%
TTTAAGGGATCCAATATTAC+AGG + chr3_1:65079399-65079418 Msa0368430:CDS 30.0%
ATAGTGATACTACTACATAC+CGG - chr3_1:65079427-65079446 None:intergenic 30.0%
ATATCATGCAACCAAAAGAA+AGG + chr3_1:65079675-65079694 Msa0368430:intron 30.0%
CTATTAAGATCAGGATTTAC+AGG - chr3_1:65079740-65079759 None:intergenic 30.0%
!! TTGATGAAATTTCTGGTTCT+AGG - chr3_1:65079797-65079816 None:intergenic 30.0%
GTTGTGTTATAAACAAAACG+TGG + chr3_1:65079891-65079910 Msa0368430:intron 30.0%
GGAAGGTAATAACAAAATGA+AGG - chr3_1:65079966-65079985 None:intergenic 30.0%
AATTCAAAACCTTGCTTAAG+GGG - chr3_1:65080082-65080101 None:intergenic 30.0%
CAAATTCAAAACCTTGCTTA+AGG - chr3_1:65080084-65080103 None:intergenic 30.0%
TAGTAGAGAAAATAAACGGT+AGG + chr3_1:65080109-65080128 Msa0368430:intron 30.0%
AAAATTCAAGCATGACGTTT+AGG + chr3_1:65080281-65080300 Msa0368430:intron 30.0%
TTATGGTCTATAGAACTGAT+CGG + chr3_1:65080394-65080413 Msa0368430:intron 30.0%
ACTGATCGGATCAAAATTTA+AGG + chr3_1:65080408-65080427 Msa0368430:intron 30.0%
CAAAATTTAAGGATGAGTTG+GGG + chr3_1:65080419-65080438 Msa0368430:intron 30.0%
AGTTCTATTATGTTGTGATG+AGG + chr3_1:65080534-65080553 Msa0368430:intron 30.0%
! ATCAAAATTTAGCATTGGGT+AGG + chr3_1:65080836-65080855 Msa0368430:intron 30.0%
! TCAAAATTTAGCATTGGGTA+GGG + chr3_1:65080837-65080856 Msa0368430:intron 30.0%
TTGTAAACGTATGATATCCT+TGG + chr3_1:65080916-65080935 Msa0368430:intron 30.0%
CTATAATAGATGGTAGAGTT+AGG - chr3_1:65081019-65081038 None:intergenic 30.0%
CTAACTCTACCATCTATTAT+AGG + chr3_1:65081017-65081036 Msa0368430:intron 30.0%
TTCAAGATATTAGCACTATG+AGG + chr3_1:65081301-65081320 Msa0368430:intron 30.0%
TCAAGATATTAGCACTATGA+GGG + chr3_1:65081302-65081321 Msa0368430:intron 30.0%
GACAAAACATTGACACTTGT+CGG - chr3_1:65078094-65078113 None:intergenic 35.0%
!! TATGGTTTGGTGATGAATGA+AGG + chr3_1:65078285-65078304 Msa0368430:intron 35.0%
!! ATGGTTTGGTGATGAATGAA+GGG + chr3_1:65078286-65078305 Msa0368430:intron 35.0%
ATATGGTCAAGGAGTTACTA+GGG + chr3_1:65078318-65078337 Msa0368430:CDS 35.0%
CATCAAGCAAGACTTCAAAA+CGG + chr3_1:65078381-65078400 Msa0368430:CDS 35.0%
!! TTCTTCGATGCTGATTTAAC+AGG + chr3_1:65078584-65078603 Msa0368430:CDS 35.0%
GGGGAGATATTGAATGTAAA+TGG - chr3_1:65078670-65078689 None:intergenic 35.0%
CTCATTATGATAGGATCTGA+TGG + chr3_1:65078786-65078805 Msa0368430:intron 35.0%
TTGAGCAATGCTAATTTGGA+AGG + chr3_1:65079351-65079370 Msa0368430:CDS 35.0%
! CCATGTCTTTTCCTTTCTTT+TGG - chr3_1:65079689-65079708 None:intergenic 35.0%
CCAAAAGAAAGGAAAAGACA+TGG + chr3_1:65079686-65079705 Msa0368430:intron 35.0%
AAAGCGAATTCATCATGTCT+AGG + chr3_1:65079709-65079728 Msa0368430:intron 35.0%
AAGCGAATTCATCATGTCTA+GGG + chr3_1:65079710-65079729 Msa0368430:intron 35.0%
TTGTTCTGTTTCCCTCAAAT+AGG + chr3_1:65080136-65080155 Msa0368430:intron 35.0%
! ATTGAGTTTGTTCAGGTCTA+GGG + chr3_1:65080779-65080798 Msa0368430:intron 35.0%
AGCTTGTGTCCTATAATAGA+TGG - chr3_1:65081029-65081048 None:intergenic 35.0%
!!! TTTCTTATGGCTAGCTTTTC+TGG + chr3_1:65081121-65081140 Msa0368430:intron 35.0%
AATTGCACAGCAATGTATCA+CGG - chr3_1:65081596-65081615 None:intergenic 35.0%
ATGCGGATGTGGAATTATTG+TGG - chr3_1:65077622-65077641 None:intergenic 40.0%
ATCAATCTATCATGCGGATG+TGG - chr3_1:65077633-65077652 None:intergenic 40.0%
TTTGGAAGTTGAAGGCAAAG+AGG - chr3_1:65077722-65077741 None:intergenic 40.0%
TGATGAGGTTTGGAAGTTGA+AGG - chr3_1:65077730-65077749 None:intergenic 40.0%
! TAAGAGATGGTGATGAGGTT+TGG - chr3_1:65077740-65077759 None:intergenic 40.0%
AACCTCATCACCATCTCTTA+AGG + chr3_1:65077740-65077759 Msa0368430:CDS 40.0%
!! AAGGTGTTGACCTTAAGAGA+TGG - chr3_1:65077753-65077772 None:intergenic 40.0%
AGAAACAGAGAGATAGGAGT+TGG - chr3_1:65077793-65077812 None:intergenic 40.0%
AACTCCTATCTCTCTGTTTC+TGG + chr3_1:65077792-65077811 Msa0368430:CDS 40.0%
!! ATGTGAGTTTCTGAGATGCT+TGG - chr3_1:65077925-65077944 None:intergenic 40.0%
TATACCTTGAATGCAAGTGC+AGG - chr3_1:65078019-65078038 None:intergenic 40.0%
! TGGTGTGTCCGTATTTTGTT+TGG + chr3_1:65078141-65078160 Msa0368430:intron 40.0%
CACGGACACCAAACAAAATA+CGG - chr3_1:65078152-65078171 None:intergenic 40.0%
CTAGTAACTCCTTGACCATA+TGG - chr3_1:65078319-65078338 None:intergenic 40.0%
CATATGGTCAAGGAGTTACT+AGG + chr3_1:65078317-65078336 Msa0368430:CDS 40.0%
TATGGTCAAGGAGTTACTAG+GGG + chr3_1:65078319-65078338 Msa0368430:CDS 40.0%
! CTTTCTGGGAAAGATTTCAG+TGG + chr3_1:65078349-65078368 Msa0368430:CDS 40.0%
ATGACGCGGATAGTCAAATT+CGG + chr3_1:65078454-65078473 Msa0368430:intron 40.0%
!! AAAATTGGCTTGACGCAGTA+TGG - chr3_1:65078537-65078556 None:intergenic 40.0%
! CTGCGTCAAGCCAATTTTAA+AGG + chr3_1:65078539-65078558 Msa0368430:CDS 40.0%
! TAAATCAGCATCGAAGAAGC+TGG - chr3_1:65078582-65078601 None:intergenic 40.0%
!! CGATGCTGATTTAACAGGTT+TGG + chr3_1:65078589-65078608 Msa0368430:intron 40.0%
TACCTTTGTCACATTTGCCA+GGG - chr3_1:65078752-65078771 None:intergenic 40.0%
TTACCTTTGTCACATTTGCC+AGG - chr3_1:65078753-65078772 None:intergenic 40.0%
! TTTGGAAGGTGCACTTGTAA+CGG + chr3_1:65079365-65079384 Msa0368430:CDS 40.0%
AACGTGGATGCTTATTGCAA+AGG + chr3_1:65079907-65079926 Msa0368430:intron 40.0%
GCAAGTTTACTAGTTACGGA+AGG - chr3_1:65079983-65080002 None:intergenic 40.0%
TAACATATGAGCTGCATGTC+TGG - chr3_1:65080023-65080042 None:intergenic 40.0%
! ATGGCTTTTAGATGTACCGA+AGG + chr3_1:65080228-65080247 Msa0368430:intron 40.0%
TGAAGCTTTGCTGGTCAAAT+TGG - chr3_1:65080350-65080369 None:intergenic 40.0%
AATTTGACCAGCAAAGCTTC+AGG + chr3_1:65080349-65080368 Msa0368430:intron 40.0%
AGCAAAGCTTCAGGATTGTT+CGG + chr3_1:65080358-65080377 Msa0368430:intron 40.0%
! ATTTAAGGATGAGTTGGGGT+TGG + chr3_1:65080423-65080442 Msa0368430:intron 40.0%
TGAACAAACTCAATGCTCTG+CGG - chr3_1:65080773-65080792 None:intergenic 40.0%
! CATTGAGTTTGTTCAGGTCT+AGG + chr3_1:65080778-65080797 Msa0368430:intron 40.0%
! TTTAGCATTGGGTAGGGAAA+AGG + chr3_1:65080843-65080862 Msa0368430:intron 40.0%
! TTAGCATTGGGTAGGGAAAA+GGG + chr3_1:65080844-65080863 Msa0368430:intron 40.0%
CTGGGTGAGAAAGTAGAATT+GGG - chr3_1:65080884-65080903 None:intergenic 40.0%
ACTGGGTGAGAAAGTAGAAT+TGG - chr3_1:65080885-65080904 None:intergenic 40.0%
TTGTATCTTCTCCTCAAGCA+GGG - chr3_1:65081177-65081196 None:intergenic 40.0%
GATATTAGCACTATGAGGGA+AGG + chr3_1:65081306-65081325 Msa0368430:intron 40.0%
TCACGTTGATCTTCTCTTAG+CGG - chr3_1:65081434-65081453 None:intergenic 40.0%
TACCTCTGCAAAATTGCTGA+TGG + chr3_1:65081455-65081474 Msa0368430:CDS 40.0%
ACCTCTGCAAAATTGCTGAT+GGG + chr3_1:65081456-65081475 Msa0368430:CDS 40.0%
! ATCGCTAACGAAGTTGTTTC+TGG + chr3_1:65081537-65081556 Msa0368430:intron 40.0%
ATTGCACAGCAATGTATCAC+GGG - chr3_1:65081595-65081614 None:intergenic 40.0%
! GACCTTAAGAGATGGTGATG+AGG - chr3_1:65077745-65077764 None:intergenic 45.0%
CGAACCAGAAACAGAGAGAT+AGG - chr3_1:65077799-65077818 None:intergenic 45.0%
TCACTCTACCACTCTTCACA+GGG + chr3_1:65077878-65077897 Msa0368430:intron 45.0%
! GATGCTTGGTGAGTTTGCTT+TGG - chr3_1:65077911-65077930 None:intergenic 45.0%
TGATCCTGCACTTGCATTCA+AGG + chr3_1:65078012-65078031 Msa0368430:CDS 45.0%
GTATATGTGCTAGTGCTTCG+TGG + chr3_1:65078121-65078140 Msa0368430:intron 45.0%
!! GTTTGGTGATGAATGAAGGG+TGG + chr3_1:65078289-65078308 Msa0368430:intron 45.0%
ACTAGGGGACAAGATCTTTC+TGG + chr3_1:65078334-65078353 Msa0368430:CDS 45.0%
CTAGGGGACAAGATCTTTCT+GGG + chr3_1:65078335-65078354 Msa0368430:CDS 45.0%
ATCAGCACCTGACATGACAA+CGG - chr3_1:65078695-65078714 None:intergenic 45.0%
!! CATGTCAGGTGCTGATCTTT+CGG + chr3_1:65078699-65078718 Msa0368430:intron 45.0%
!! TAGAAGTGCAGACTTTTCCC+TGG + chr3_1:65078732-65078751 Msa0368430:CDS 45.0%
TTCCCTGGCAAATGTGACAA+AGG + chr3_1:65078747-65078766 Msa0368430:CDS 45.0%
TTGGCATTACTGCTTTCTGC+AGG + chr3_1:65079323-65079342 Msa0368430:intron 45.0%
! TTGGAAGGTGCACTTGTAAC+GGG + chr3_1:65079366-65079385 Msa0368430:CDS 45.0%
AATCCAGTTCCCCTTAAGCA+AGG + chr3_1:65080070-65080089 Msa0368430:intron 45.0%
AAACCTTGCTTAAGGGGAAC+TGG - chr3_1:65080076-65080095 None:intergenic 45.0%
GGGTCAGTAGACCTATTTGA+GGG - chr3_1:65080150-65080169 None:intergenic 45.0%
TGGGTCAGTAGACCTATTTG+AGG - chr3_1:65080151-65080170 None:intergenic 45.0%
CGGTACATCTAAAAGCCATG+TGG - chr3_1:65080227-65080246 None:intergenic 45.0%
ACGACTCTTAAGGACGAGTT+TGG - chr3_1:65080316-65080335 None:intergenic 45.0%
CCTTAAGAGTCGTCATGTCT+CGG + chr3_1:65080323-65080342 Msa0368430:intron 45.0%
GAACAATCCTGAAGCTTTGC+TGG - chr3_1:65080359-65080378 None:intergenic 45.0%
GCAAAGCTTCAGGATTGTTC+GGG + chr3_1:65080359-65080378 Msa0368430:intron 45.0%
TTCAGGATTGTTCGGGTCTT+GGG + chr3_1:65080366-65080385 Msa0368430:intron 45.0%
AGAACTGAGAGGTGAGTAAC+GGG - chr3_1:65080465-65080484 None:intergenic 45.0%
GAGAACTGAGAGGTGAGTAA+CGG - chr3_1:65080466-65080485 None:intergenic 45.0%
AATTAGGGGTGAGAACTGAG+AGG - chr3_1:65080476-65080495 None:intergenic 45.0%
GAACAAACTCAATGCTCTGC+GGG - chr3_1:65080772-65080791 None:intergenic 45.0%
!! GCAGAGCATTGAGTTTGTTC+AGG + chr3_1:65080772-65080791 Msa0368430:intron 45.0%
GTATGATATCCTTGGACGCA+GGG + chr3_1:65080924-65080943 Msa0368430:intron 45.0%
AGGGCAGAAGGTAGTCATTT+AGG + chr3_1:65080943-65080962 Msa0368430:intron 45.0%
!!! CTTATGGCTAGCTTTTCTGG+CGG + chr3_1:65081124-65081143 Msa0368430:intron 45.0%
TATATCAACCTAGGCAGCCT+TGG - chr3_1:65081150-65081169 None:intergenic 45.0%
CAGGGGTTGTATATCAACCT+AGG - chr3_1:65081159-65081178 None:intergenic 45.0%
TGATATACAACCCCTGCTTG+AGG + chr3_1:65081163-65081182 Msa0368430:intron 45.0%
TGTATCTTCTCCTCAAGCAG+GGG - chr3_1:65081176-65081195 None:intergenic 45.0%
GTTGTATCTTCTCCTCAAGC+AGG - chr3_1:65081178-65081197 None:intergenic 45.0%
! ACCCATCAGCAATTTTGCAG+AGG - chr3_1:65081460-65081479 None:intergenic 45.0%
GACAGAGTGAACTCATCAAC+TGG + chr3_1:65081561-65081580 Msa0368430:intron 45.0%
!!! GATATATATTTTATTTTTTA+TGG + chr3_1:65080199-65080218 Msa0368430:intron 5.0%
!! AGTTGGTGAGCAGGTTGAAG+AGG - chr3_1:65077776-65077795 None:intergenic 50.0%
!! AGAGATAGGAGTTGGTGAGC+AGG - chr3_1:65077785-65077804 None:intergenic 50.0%
CTCACTCTACCACTCTTCAC+AGG + chr3_1:65077877-65077896 Msa0368430:intron 50.0%
GATTGCTTCCCTGTGAAGAG+TGG - chr3_1:65077889-65077908 None:intergenic 50.0%
! TGGTGATGAATGAAGGGTGG+AGG + chr3_1:65078292-65078311 Msa0368430:intron 50.0%
GGTGATGAATGAAGGGTGGA+GGG + chr3_1:65078293-65078312 Msa0368430:intron 50.0%
TCAGCACCTGACATGACAAC+GGG - chr3_1:65078694-65078713 None:intergenic 50.0%
GGATCCAATATTACAGGCGC+CGG + chr3_1:65079405-65079424 Msa0368430:CDS 50.0%
CATACCGGCGCCTGTAATAT+TGG - chr3_1:65079412-65079431 None:intergenic 50.0%
AGCATGACGTTTAGGTGAGC+TGG + chr3_1:65080289-65080308 Msa0368430:intron 50.0%
CCGAGACATGACGACTCTTA+AGG - chr3_1:65080326-65080345 None:intergenic 50.0%
CTTCAGGATTGTTCGGGTCT+TGG + chr3_1:65080365-65080384 Msa0368430:intron 50.0%
TCGGGTCTTGGGACAAGTTA+TGG + chr3_1:65080377-65080396 Msa0368430:intron 50.0%
CGTATGATATCCTTGGACGC+AGG + chr3_1:65080923-65080942 Msa0368430:intron 50.0%
AGCGGCACATCAGTGAAATC+TGG - chr3_1:65081416-65081435 None:intergenic 50.0%
! GGTGAGCAGGTTGAAGAGGA+AGG - chr3_1:65077772-65077791 None:intergenic 55.0%
ATGAAGGGTGGAGGGCCATA+TGG + chr3_1:65078301-65078320 Msa0368430:intron 55.0%
ACCTGACATGACAACGGGTG+GGG - chr3_1:65078689-65078708 None:intergenic 55.0%
CACCTGACATGACAACGGGT+GGG - chr3_1:65078690-65078709 None:intergenic 55.0%
GCACAGCAATGTATCACGGG+TGG - chr3_1:65081592-65081611 None:intergenic 55.0%
GGTGGAGGGCCATATGGTCA+AGG + chr3_1:65078307-65078326 Msa0368430:CDS 60.0%
TCCCCACCCGTTGTCATGTC+AGG + chr3_1:65078685-65078704 Msa0368430:intron 60.0%
GCACCTGACATGACAACGGG+TGG - chr3_1:65078691-65078710 None:intergenic 60.0%
ATCCTTGGACGCAGGGCAGA+AGG + chr3_1:65080931-65080950 Msa0368430:intron 60.0%
TACCTTCTGCCCTGCGTCCA+AGG - chr3_1:65080936-65080955 None:intergenic 60.0%
!!! GCTAGCTTTTCTGGCGGCCA+AGG + chr3_1:65081130-65081149 Msa0368430:intron 60.0%
TCTGGCGGCCAAGGCTGCCT+AGG + chr3_1:65081139-65081158 Msa0368430:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 65077609 65081796 65077609 ID=Msa0368430;Name=Msa0368430
chr3_1 mRNA 65077609 65081796 65077609 ID=Msa0368430-mRNA-1;Parent=Msa0368430;Name=Msa0368430-mRNA-1;_AED=0.03;_eAED=0.03;_QI=91|1|1|1|1|1|8|179|224
chr3_1 exon 65077609 65077813 65077609 ID=Msa0368430-mRNA-1:exon:12979;Parent=Msa0368430-mRNA-1
chr3_1 exon 65077899 65078033 65077899 ID=Msa0368430-mRNA-1:exon:12980;Parent=Msa0368430-mRNA-1
chr3_1 exon 65078307 65078402 65078307 ID=Msa0368430-mRNA-1:exon:12981;Parent=Msa0368430-mRNA-1
chr3_1 exon 65078533 65078605 65078533 ID=Msa0368430-mRNA-1:exon:12982;Parent=Msa0368430-mRNA-1
chr3_1 exon 65078707 65078768 65078707 ID=Msa0368430-mRNA-1:exon:12983;Parent=Msa0368430-mRNA-1
chr3_1 exon 65079345 65079426 65079345 ID=Msa0368430-mRNA-1:exon:12984;Parent=Msa0368430-mRNA-1
chr3_1 exon 65081417 65081477 65081417 ID=Msa0368430-mRNA-1:exon:12985;Parent=Msa0368430-mRNA-1
chr3_1 exon 65081566 65081796 65081566 ID=Msa0368430-mRNA-1:exon:12986;Parent=Msa0368430-mRNA-1
chr3_1 five_prime_UTR 65077609 65077699 65077609 ID=Msa0368430-mRNA-1:five_prime_utr;Parent=Msa0368430-mRNA-1
chr3_1 CDS 65077700 65077813 65077700 ID=Msa0368430-mRNA-1:cds;Parent=Msa0368430-mRNA-1
chr3_1 CDS 65077899 65078033 65077899 ID=Msa0368430-mRNA-1:cds;Parent=Msa0368430-mRNA-1
chr3_1 CDS 65078307 65078402 65078307 ID=Msa0368430-mRNA-1:cds;Parent=Msa0368430-mRNA-1
chr3_1 CDS 65078533 65078605 65078533 ID=Msa0368430-mRNA-1:cds;Parent=Msa0368430-mRNA-1
chr3_1 CDS 65078707 65078768 65078707 ID=Msa0368430-mRNA-1:cds;Parent=Msa0368430-mRNA-1
chr3_1 CDS 65079345 65079426 65079345 ID=Msa0368430-mRNA-1:cds;Parent=Msa0368430-mRNA-1
chr3_1 CDS 65081417 65081477 65081417 ID=Msa0368430-mRNA-1:cds;Parent=Msa0368430-mRNA-1
chr3_1 CDS 65081566 65081617 65081566 ID=Msa0368430-mRNA-1:cds;Parent=Msa0368430-mRNA-1
chr3_1 three_prime_UTR 65081618 65081796 65081618 ID=Msa0368430-mRNA-1:three_prime_utr;Parent=Msa0368430-mRNA-1
Gene Sequence

>Msa0368430

ATGGCTCTTTTTCTGAACGCCTCTTTGCCTTCAACTTCCAAACCTCATCACCATCTCTTAAGGTCAACACCTTCCTCTTCAACCTGCTCACCAACTCCTATCTCTCTGTTTCTGGGAAGCAATCCAAAGCAAACTCACCAAGCATCTCAGAAACTCACATTATCATTCGGTGAATCAGTGTCTAGTGCAGCTCTAGTTGCTCTTCTATCTGCTTCTCTCTTCTTCGTTGATCCTGCACTTGCATTCAAGGGTGGAGGGCCATATGGTCAAGGAGTTACTAGGGGACAAGATCTTTCTGGGAAAGATTTCAGTGGCAAGACACTCATCAAGCAAGACTTCAAAACGTCCATACTGCGTCAAGCCAATTTTAAAGGTGCAAAATTGTTAGGTGCCAGCTTCTTCGATGCTGATTTAACAGGTGCTGATCTTTCGGATACTGATCTTAGAAGTGCAGACTTTTCCCTGGCAAATGTGACAAAGGTAAATTTGAGCAATGCTAATTTGGAAGGTGCACTTGTAACGGGAAATACATCTTTTAAGGGATCCAATATTACAGGCGCCGATTTCACTGATGTGCCGCTAAGAGAAGATCAACGTGAATACCTCTGCAAAATTGCTGATGGAGTGAACTCATCAACTGGAAATGCCACCCGTGATACATTGCTGTGCAATTAA

Protein sequence

>Msa0368430

MALFLNASLPSTSKPHHHLLRSTPSSSTCSPTPISLFLGSNPKQTHQASQKLTLSFGESVSSAALVALLSASLFFVDPALAFKGGGPYGQGVTRGQDLSGKDFSGKTLIKQDFKTSILRQANFKGAKLLGASFFDADLTGADLSDTDLRSADFSLANVTKVNLSNANLEGALVTGNTSFKGSNITGADFTDVPLREDQREYLCKIADGVNSSTGNATRDTLLCN*