AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0760950


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0760950 MtrunA17_Chr5g0411091 91.205 307 25 2 1 306 1 306 1.53e-170 475
Msa0760950 MtrunA17_Chr7g0267571 29.730 259 143 6 39 271 46 291 1.74e-31 119
Msa0760950 MtrunA17_Chr1g0177101 38.378 185 93 6 96 268 108 283 2.13e-31 119
Msa0760950 MtrunA17_Chr3g0132451 34.298 242 140 6 54 291 60 286 6.46e-31 117
Msa0760950 MtrunA17_Chr3g0116631 38.983 177 103 4 98 271 111 285 8.15e-30 114
Msa0760950 MtrunA17_Chr1g0168601 37.838 148 85 3 125 271 91 232 5.80e-26 103
Msa0760950 MtrunA17_Chr4g0058151 33.714 175 112 3 98 271 124 295 1.78e-25 103
Msa0760950 MtrunA17_Chr1g0181111 27.341 267 153 9 38 274 23 278 5.74e-20 87.8
Msa0760950 MtrunA17_Chr7g0265341 26.019 319 182 12 34 307 57 366 2.12e-18 85.5
Msa0760950 MtrunA17_Chr7g0265341 28.108 185 119 4 97 271 250 430 7.60e-14 72.0
Msa0760950 MtrunA17_Chr3g0087481 32.584 178 107 6 96 265 60 232 3.04e-18 82.0
Msa0760950 MtrunA17_Chr1g0179701 25.368 272 159 9 61 298 97 358 1.82e-17 82.8
Msa0760950 MtrunA17_Chr1g0179701 27.933 179 123 4 97 271 242 418 2.19e-12 67.4
Msa0760950 MtrunA17_Chr6g0466451 31.522 184 115 5 97 271 106 287 2.59e-15 76.3
Msa0760950 MtrunA17_Chr6g0466451 24.651 215 151 5 97 307 16 223 5.15e-11 63.2
Msa0760950 MtrunA17_Chr6g0465631 31.522 184 115 5 97 271 106 287 2.68e-15 76.3
Msa0760950 MtrunA17_Chr6g0465631 24.651 215 151 5 97 307 16 223 5.80e-11 63.2
Msa0760950 MtrunA17_Chr1g0201151 31.443 194 102 8 97 271 210 391 3.96e-15 75.9
Msa0760950 MtrunA17_Chr0c09g0493511 30.435 184 117 5 97 271 119 300 2.18e-14 73.6
Msa0760950 MtrunA17_Chr6g0465751 29.891 184 118 5 97 271 201 382 1.31e-13 71.2
Msa0760950 MtrunA17_Chr6g0465691 30.435 184 117 5 97 271 119 300 1.51e-13 70.9
Msa0760950 MtrunA17_Chr6g0466501 30.435 184 117 5 97 271 201 382 1.79e-13 70.9
Msa0760950 MtrunA17_Chr4g0044541 26.842 190 115 4 97 271 214 394 3.56e-13 70.1
Msa0760950 MtrunA17_Chr4g0044541 26.697 221 143 7 95 307 121 330 7.68e-12 65.9
Msa0760950 MtrunA17_Chr4g0044541 28.571 168 109 5 92 258 30 187 2.40e-11 64.3
Msa0760950 MtrunA17_Chr4g0070231 24.074 216 148 5 96 308 46 248 4.01e-12 66.2
Msa0760950 MtrunA17_Chr4g0074711 24.878 205 136 6 96 294 74 266 5.69e-12 65.9
Msa0760950 MtrunA17_Chr3g0134141 28.796 191 110 6 97 271 204 384 2.45e-11 64.3
Msa0760950 MtrunA17_Chr2g0328791 24.176 182 124 3 96 271 15 188 3.34e-11 63.5
Msa0760950 MtrunA17_Chr3g0110211 29.310 174 111 4 100 271 29 192 4.81e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0760950 AT2G35410.1 48.763 283 132 5 1 275 1 278 3.66e-81 248
Msa0760950 AT4G09040.2 37.566 189 112 2 93 278 31 216 3.97e-34 125
Msa0760950 AT4G09040.1 37.566 189 112 2 93 278 91 276 1.85e-33 125
Msa0760950 AT5G50250.1 32.155 283 149 7 31 273 9 288 5.09e-31 118
Msa0760950 AT3G52380.1 32.984 191 105 5 98 273 118 300 4.57e-29 114
Msa0760950 AT4G24770.1 36.000 175 108 3 98 271 152 323 6.85e-28 110
Msa0760950 AT4G24770.2 36.000 175 108 3 98 271 152 323 6.85e-28 110
Msa0760950 AT1G60000.1 31.443 194 124 4 82 271 68 256 1.91e-24 100
Msa0760950 AT2G37220.1 31.658 199 103 5 98 271 93 283 8.35e-24 99.0
Msa0760950 AT3G52150.2 30.415 217 129 7 59 265 46 250 9.79e-19 84.3
Msa0760950 AT3G52150.1 30.415 217 129 7 59 265 46 250 9.79e-19 84.3
Msa0760950 AT1G01080.2 31.844 179 110 5 98 266 110 286 2.87e-18 83.6
Msa0760950 AT1G01080.1 31.461 178 111 5 98 266 110 285 3.92e-18 83.2
Msa0760950 AT1G01080.3 31.902 163 101 4 98 251 110 271 1.92e-16 78.6
Msa0760950 AT4G34110.1 30.526 190 108 5 97 271 216 396 1.01e-15 78.2
Msa0760950 AT4G34110.1 26.554 177 120 4 97 271 125 293 1.54e-11 65.5
Msa0760950 AT1G49760.1 28.421 190 112 4 97 271 225 405 8.02e-14 72.4
Msa0760950 AT1G49760.1 26.027 219 143 7 97 307 134 341 1.44e-13 71.6
Msa0760950 AT1G49760.2 28.421 190 112 4 97 271 225 405 8.02e-14 72.4
Msa0760950 AT1G49760.2 26.027 219 143 7 97 307 134 341 1.44e-13 71.6
Msa0760950 AT1G22760.1 26.852 216 151 4 95 307 135 346 8.11e-14 72.4
Msa0760950 AT1G22760.1 24.479 192 117 5 97 271 230 410 6.38e-13 69.7
Msa0760950 AT3G16380.1 26.601 203 136 4 78 271 184 382 4.16e-13 70.1
Msa0760950 AT1G71770.1 25.000 208 127 6 82 271 224 420 1.80e-12 68.2
Msa0760950 AT1G71770.1 27.624 181 121 4 98 278 61 231 8.50e-11 63.2
Msa0760950 AT1G71770.2 25.000 208 127 6 82 271 224 420 1.80e-12 68.2
Msa0760950 AT1G71770.2 27.624 181 121 4 98 278 61 231 8.50e-11 63.2
Msa0760950 AT2G23350.1 26.630 184 111 4 97 271 135 303 8.40e-12 66.2
Msa0760950 AT1G34140.1 27.957 186 119 4 97 271 120 301 9.96e-12 65.5
Msa0760950 AT2G36660.1 27.841 176 117 5 97 271 113 279 1.05e-11 65.9

Find 90 sgRNAs with CRISPR-Local

Find 374 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAGGAATACCCTTAAAAT+TGG 0.147910 5_2:+17809790 None:intergenic
GTGGGAGCTGGAGGAGGTGG+AGG 0.249111 5_2:+17812948 None:intergenic
AAATACGAATTGAGATTTAT+AGG 0.249541 5_2:+17809823 None:intergenic
ACTTCTTCACTTCCAGCTTC+TGG 0.261287 5_2:+17810085 None:intergenic
AGGTTATACATTTGTTACTA+TGG 0.261835 5_2:-17814579 Msa0760950:CDS
AGTTGAAGCATGGAGTTTAA+TGG 0.267862 5_2:+17815080 None:intergenic
AATACGAATTGAGATTTATA+GGG 0.280422 5_2:+17809824 None:intergenic
TGATCTTTGGATATGGTATA+TGG 0.299802 5_2:-17810003 Msa0760950:three_prime_UTR
CATGTACTGATCTTTGGATA+TGG 0.322509 5_2:-17810010 Msa0760950:three_prime_UTR
TAAAGCGTAGCAGAGTGTTT+TGG 0.351271 5_2:+17814981 None:intergenic
CTCTGTATACATAGGTAATC+AGG 0.372624 5_2:+17809947 None:intergenic
GGAGCTGGAGGAGGTGGAGG+AGG 0.377123 5_2:+17812951 None:intergenic
TAGATTGTAAAGAGCAAAGA+TGG 0.379214 5_2:-17814611 Msa0760950:CDS
ATTAGGATTTATGACTCATC+TGG 0.380633 5_2:+17810037 None:intergenic
GGAGTGGGAGCTGGAGGAGG+TGG 0.381685 5_2:+17812945 None:intergenic
AAATATCAGGCCGGATAGTA+AGG 0.395140 5_2:-17813001 Msa0760950:CDS
CTTCCCTTGCAAAGCAGAAA+TGG 0.396033 5_2:+17812734 None:intergenic
ATCCCTTTGCAGGAGTTACT+TGG 0.398199 5_2:-17810193 Msa0760950:intron
TTAGGAATACCCTTAAAATT+GGG 0.408771 5_2:+17809791 None:intergenic
CCGGATATCAAGGATCTCTT+TGG 0.413807 5_2:-17814844 Msa0760950:CDS
GGTGGGAAATCTGCTGGGTA+TGG 0.419393 5_2:-17812795 Msa0760950:CDS
AAGACAACCCTGGCTGAAAC+TGG 0.421042 5_2:+17812828 None:intergenic
AGCAAAGATGGGAAGGGAAA+AGG 0.425037 5_2:-17814599 Msa0760950:CDS
GTGGATATTGTGAGAGAAAA+GGG 0.426550 5_2:+17815035 None:intergenic
ACCCCTGGTGGGAAATCTGC+TGG 0.433529 5_2:-17812801 Msa0760950:CDS
TGTGGATATTGTGAGAGAAA+AGG 0.438537 5_2:+17815034 None:intergenic
TTAGGAGTGGGAGCTGGAGG+AGG 0.441065 5_2:+17812942 None:intergenic
CCAAAGAGATCCTTGATATC+CGG 0.445118 5_2:+17814844 None:intergenic
ATTACATAACGTGCTTCCTT+AGG 0.449237 5_2:+17812924 None:intergenic
AGGGTTGTCTTTCAAACCCC+TGG 0.459212 5_2:-17812816 Msa0760950:CDS
GCCTTGGTCTCTTTCTAAGC+CGG 0.461671 5_2:-17814863 Msa0760950:CDS
TGGATTTGTTTCTTATCATA+CGG 0.462438 5_2:-17812775 Msa0760950:CDS
TCGTTGTCTTTAACTTGCCT+TGG 0.470028 5_2:-17814879 Msa0760950:CDS
TCAAAACACCAGTTTCAGCC+AGG 0.476508 5_2:-17812836 Msa0760950:CDS
TCTTTCTAAGCCGGATATCA+AGG 0.480039 5_2:-17814854 Msa0760950:CDS
GCATGGAGTTTAATGGAATC+TGG 0.482931 5_2:+17815087 None:intergenic
GGATTCAAGAGAGGAGGCTC+AGG 0.485969 5_2:-17814558 Msa0760950:CDS
AAGAAGAAAAGTGAAGTTTG+TGG 0.493594 5_2:+17815016 None:intergenic
TCCTTAGGAGTGGGAGCTGG+AGG 0.495862 5_2:+17812939 None:intergenic
TAGATCTTGCTTTCCACGCA+AGG 0.504732 5_2:+17812889 None:intergenic
CAAACTCTACCCTTACTATC+CGG 0.508382 5_2:+17812991 None:intergenic
TTGATGTGTGAATACAGTTA+TGG 0.514213 5_2:+17815152 None:intergenic
GACGACACGCAACCAGAAGC+TGG 0.523376 5_2:-17810097 Msa0760950:CDS
TACCCAGCAGATTTCCCACC+AGG 0.524803 5_2:+17812798 None:intergenic
TCCTCCAGCTCCCACTCCTA+AGG 0.525600 5_2:-17812940 Msa0760950:CDS
TGTAAAGAGCAAAGATGGGA+AGG 0.529390 5_2:-17814606 Msa0760950:CDS
GCTTCCTTAGGAGTGGGAGC+TGG 0.530043 5_2:+17812936 None:intergenic
AATACCCTTAAAATTGGGAC+TGG 0.530910 5_2:+17809796 None:intergenic
CTTCATATCTCTGTATACAT+AGG 0.531403 5_2:+17809939 None:intergenic
AAGGGATTGAAGTTGAAGCA+TGG 0.531889 5_2:+17815070 None:intergenic
GTAAGGGTAGAGTTTGCAAA+GGG 0.535644 5_2:-17812984 Msa0760950:CDS
GAGGTGGAGAAGTAGATAAG+AGG 0.542194 5_2:+17815217 None:intergenic
CTATGTATACAGAGATATGA+AGG 0.544245 5_2:-17809938 Msa0760950:three_prime_UTR
AGATTGTAAAGAGCAAAGAT+GGG 0.546323 5_2:-17814610 Msa0760950:CDS
GTTTGACATACCTTAAAATG+TGG 0.549505 5_2:-17809879 Msa0760950:three_prime_UTR
CTGCCATTTCTGCTTTGCAA+GGG 0.550388 5_2:-17812737 Msa0760950:CDS
TATTTCGTTACTATCACCAA+TGG 0.551692 5_2:-17815190 Msa0760950:exon
AGTAAGGGTAGAGTTTGCAA+AGG 0.552899 5_2:-17812985 Msa0760950:CDS
CATTTCTGCTTTGCAAGGGA+AGG 0.553509 5_2:-17812733 Msa0760950:intron
GCTGCCATTTCTGCTTTGCA+AGG 0.563024 5_2:-17812738 Msa0760950:CDS
CCCCTGGTGGGAAATCTGCT+GGG 0.563781 5_2:-17812800 Msa0760950:CDS
TGTGTGGTTCAGGAAATATC+AGG 0.564742 5_2:-17813014 Msa0760950:intron
TCTTGCTTTCCACGCAAGGT+TGG 0.567345 5_2:+17812893 None:intergenic
GTTGATTCTAACGTTGCCAT+TGG 0.567931 5_2:+17815174 None:intergenic
TACTATGGATTCAAGAGAGG+AGG 0.574347 5_2:-17814564 Msa0760950:CDS
GAGTAGAAACCTCTACAAGC+TGG 0.574421 5_2:-17809977 Msa0760950:three_prime_UTR
TGTTACTATGGATTCAAGAG+AGG 0.579721 5_2:-17814567 Msa0760950:CDS
TGTTTCTTATCATACGGAGG+AGG 0.584671 5_2:-17812769 Msa0760950:CDS
CCCAGCAGATTTCCCACCAG+GGG 0.587328 5_2:+17812800 None:intergenic
TCTATGCATCCAACCTTGCG+TGG 0.590146 5_2:-17812902 Msa0760950:CDS
GTTGTCTTTCAAACCCCTGG+TGG 0.593929 5_2:-17812813 Msa0760950:CDS
CAAAACACCAGTTTCAGCCA+GGG 0.593941 5_2:-17812835 Msa0760950:CDS
GGTAAAACTCCAGCTTGTAG+AGG 0.605360 5_2:+17809968 None:intergenic
AAGGATCTCTTTGGTCAATG+TGG 0.608677 5_2:-17814835 Msa0760950:CDS
TAACGTGCTTCCTTAGGAGT+GGG 0.608846 5_2:+17812930 None:intergenic
AGGAGTAGTGATGATGATGC+CGG 0.617036 5_2:+17815237 None:intergenic
TTGTCTTTCAAACCCCTGGT+GGG 0.617575 5_2:-17812812 Msa0760950:CDS
ATAACGTGCTTCCTTAGGAG+TGG 0.620126 5_2:+17812929 None:intergenic
GTAAAGAGCAAAGATGGGAA+GGG 0.628943 5_2:-17814605 Msa0760950:CDS
ACTCTGCTACGCTTTACAAG+AGG 0.635592 5_2:-17814974 Msa0760950:CDS
AATATCAGGCCGGATAGTAA+GGG 0.636833 5_2:-17813000 Msa0760950:CDS
ATTTGTTTCTTATCATACGG+AGG 0.652812 5_2:-17812772 Msa0760950:CDS
TGGTTCAGGAAATATCAGGC+CGG 0.653607 5_2:-17813010 Msa0760950:intron
AGTAACGAAATAAGACGAGG+TGG 0.654928 5_2:+17815201 None:intergenic
ACCCAGCAGATTTCCCACCA+GGG 0.675913 5_2:+17812799 None:intergenic
TGGAACTGTAATTGACGTTG+AGG 0.676463 5_2:-17814815 Msa0760950:intron
TCCGGCTTAGAAAGAGACCA+AGG 0.685478 5_2:+17814862 None:intergenic
AGGGGTTTGAAAGACAACCC+TGG 0.712579 5_2:+17812818 None:intergenic
GATAGTAACGAAATAAGACG+AGG 0.756502 5_2:+17815198 None:intergenic
AAGGCAAGTTAAAGACAACG+AGG 0.810771 5_2:+17814881 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTTTAATTTTTGAATTTT+TGG - chr5_2:17810278-17810297 Msa0760950:intron 10.0%
!!! ATTTAGAAACATTTTTTTAA+AGG - chr5_2:17810750-17810769 Msa0760950:intron 10.0%
!! AATTAATTATTTAATTAGAC+AGG + chr5_2:17811012-17811031 None:intergenic 10.0%
!! ATAATGAATCTTCTTAATAA+TGG - chr5_2:17810640-17810659 Msa0760950:intron 15.0%
!!! ATGAATAATATCTAAAACAT+AGG + chr5_2:17811369-17811388 None:intergenic 15.0%
!!! AGGTAGTATTTTTTTTTAAT+AGG + chr5_2:17811757-17811776 None:intergenic 15.0%
!! AAAAAAAAATACTACCTAAA+AGG - chr5_2:17811760-17811779 Msa0760950:intron 15.0%
!! AAAAAAAATACTACCTAAAA+GGG - chr5_2:17811761-17811780 Msa0760950:intron 15.0%
!!! ATTAAAGATTTTTTTCAACA+AGG + chr5_2:17812474-17812493 None:intergenic 15.0%
!!! ATTTTGATTTTTGTATCTTT+AGG - chr5_2:17812581-17812600 Msa0760950:intron 15.0%
!! AAAATTATGAAAAAGAAACA+CGG + chr5_2:17812886-17812905 None:intergenic 15.0%
!!! TGTTTCTTTTTCATAATTTT+GGG - chr5_2:17812886-17812905 Msa0760950:CDS 15.0%
!! TTATAACATTAAAATTGTTG+AGG + chr5_2:17813297-17813316 None:intergenic 15.0%
!!! AAATTTCATGTTTATAGTTT+TGG + chr5_2:17813552-17813571 None:intergenic 15.0%
!! GAATAAAAAATCATATGAAT+AGG - chr5_2:17814554-17814573 Msa0760950:CDS 15.0%
!!! ATTCACAATATTTTTCAATT+AGG - chr5_2:17815138-17815157 Msa0760950:CDS 15.0%
!! TACTACATGATTGTTTAATT+TGG - chr5_2:17810383-17810402 Msa0760950:intron 20.0%
!!! ATTGTTTAATTTGGAGAAAT+GGG - chr5_2:17810392-17810411 Msa0760950:intron 20.0%
!! ATAAAATAAAAATAGATGCG+AGG + chr5_2:17810544-17810563 None:intergenic 20.0%
!! AAGAAGATTCATTATTTATC+CGG + chr5_2:17810635-17810654 None:intergenic 20.0%
!!! AACCAAATTAACATATGTTT+TGG + chr5_2:17811553-17811572 None:intergenic 20.0%
!!! AAAACATATGTTAATTTGGT+TGG - chr5_2:17811552-17811571 Msa0760950:intron 20.0%
!!! AAACATATGTTAATTTGGTT+GGG - chr5_2:17811553-17811572 Msa0760950:intron 20.0%
!! TTATTTATGTTATGAACTTC+TGG + chr5_2:17811710-17811729 None:intergenic 20.0%
!! AAATAATCTTATCACCTAAA+AGG - chr5_2:17811724-17811743 Msa0760950:intron 20.0%
!! AATAATCTTATCACCTAAAA+GGG - chr5_2:17811725-17811744 Msa0760950:intron 20.0%
!!! AACTAAAATGGACATTTTAA+AGG + chr5_2:17811824-17811843 None:intergenic 20.0%
!!! ATTCATTTTTCATTCAACTT+CGG + chr5_2:17811945-17811964 None:intergenic 20.0%
!! TTGAGACAATTTGATATTAA+TGG - chr5_2:17812438-17812457 Msa0760950:intron 20.0%
!!! ATTATTGAGTCTTATTTATG+TGG + chr5_2:17812675-17812694 None:intergenic 20.0%
!! TAAGACTCAATAATATTGTT+TGG - chr5_2:17812681-17812700 Msa0760950:intron 20.0%
!! TCAATAATATTGTTTGGATT+TGG - chr5_2:17812687-17812706 Msa0760950:intron 20.0%
!! TCAAATAGTCAAATATAGTT+TGG + chr5_2:17812717-17812736 None:intergenic 20.0%
!!! TAATTGAAAATCCGATTTTA+AGG + chr5_2:17812855-17812874 None:intergenic 20.0%
!! AAATTATGAAAAAGAAACAC+GGG + chr5_2:17812885-17812904 None:intergenic 20.0%
!!! GTGTTTCTTTTTCATAATTT+TGG - chr5_2:17812885-17812904 Msa0760950:CDS 20.0%
!! AAAAATTACCATACAGTAAA+AGG + chr5_2:17814102-17814121 None:intergenic 20.0%
!!! AGTTGATATAGTTATTGTAT+AGG - chr5_2:17814237-17814256 Msa0760950:intron 20.0%
!! TATTAAGAAATTCAATGTTG+TGG - chr5_2:17814287-17814306 Msa0760950:intron 20.0%
!! ATAGAAAATGTAGAAACAAT+GGG - chr5_2:17814343-17814362 Msa0760950:intron 20.0%
!! TACATTCTTCTATTATAGTA+TGG - chr5_2:17814369-17814388 Msa0760950:intron 20.0%
!!! TAGCATGCTTAATTTTTATT+TGG - chr5_2:17814630-17814649 Msa0760950:intron 20.0%
!!! CTTAATTTTTATTTGGATTG+TGG - chr5_2:17814637-17814656 Msa0760950:intron 20.0%
!!! TAAACTTTATCCACATTTTA+AGG + chr5_2:17815178-17815197 None:intergenic 20.0%
!! AATACGAATTGAGATTTATA+GGG + chr5_2:17815223-17815242 None:intergenic 20.0%
!! AAATACGAATTGAGATTTAT+AGG + chr5_2:17815224-17815243 None:intergenic 20.0%
! GAAAAACCGATAAATAAAAC+CGG - chr5_2:17809788-17809807 Msa0760950:three_prime_UTR 25.0%
!!! GATTGTTTAATTTGGAGAAA+TGG - chr5_2:17810391-17810410 Msa0760950:intron 25.0%
!! AGGTTATACATTTGTTACTA+TGG - chr5_2:17810465-17810484 Msa0760950:intron 25.0%
!!! TTCAGAATTAAGAGTATTAG+AGG + chr5_2:17811336-17811355 None:intergenic 25.0%
! CAACAAATATGGAAAATAAG+AGG + chr5_2:17811465-17811484 None:intergenic 25.0%
! TGCCAAAACATATGTTAATT+TGG - chr5_2:17811548-17811567 Msa0760950:intron 25.0%
! TGCTAAAATGTAAAAACTAG+AGG - chr5_2:17811598-17811617 Msa0760950:intron 25.0%
! ATTATATCACACTTCTTTGA+GGG + chr5_2:17811665-17811684 None:intergenic 25.0%
! ATACAGAAAGGAAACTAAAA+TGG + chr5_2:17811836-17811855 None:intergenic 25.0%
! GAGATATAACATATACAGAA+AGG + chr5_2:17811848-17811867 None:intergenic 25.0%
! TTTAATGACATCTAATTGTG+TGG - chr5_2:17812014-17812033 Msa0760950:intron 25.0%
!! TGGATTTGTTTCTTATCATA+CGG - chr5_2:17812269-17812288 Msa0760950:intron 25.0%
! TCAAGTGTTTAAATAAAACG+TGG + chr5_2:17812557-17812576 None:intergenic 25.0%
! TGTTCAAGATAAGTATTTGA+TGG - chr5_2:17812627-17812646 Msa0760950:intron 25.0%
! TAATATTGTTTGGATTTGGA+TGG - chr5_2:17812691-17812710 Msa0760950:intron 25.0%
! ACTATATTTGACTATTTGAG+TGG - chr5_2:17812718-17812737 Msa0760950:intron 25.0%
! ATATAAGTATACAACCTTTG+TGG - chr5_2:17812779-17812798 Msa0760950:CDS 25.0%
! AATTATGAAAAAGAAACACG+GGG + chr5_2:17812884-17812903 None:intergenic 25.0%
! TAAATGGTTTCACTTCAATT+AGG - chr5_2:17812915-17812934 Msa0760950:CDS 25.0%
!! TTTTGAATGATTGTTAAGCT+CGG - chr5_2:17813006-17813025 Msa0760950:intron 25.0%
!! ACAGATAAATTGCATTTTCA+TGG - chr5_2:17813117-17813136 Msa0760950:intron 25.0%
! TTGTTGTGATACAATGAATT+TGG - chr5_2:17813787-17813806 Msa0760950:intron 25.0%
! TACAATGAATTTGGTTATGT+TGG - chr5_2:17813796-17813815 Msa0760950:intron 25.0%
! TTCCTTATATAGAAGTGAAA+TGG - chr5_2:17814121-17814140 Msa0760950:intron 25.0%
! ATAGTTATTGTATAGGAGTT+TGG - chr5_2:17814244-17814263 Msa0760950:intron 25.0%
! GATAGAAAATGTAGAAACAA+TGG - chr5_2:17814342-17814361 Msa0760950:intron 25.0%
!! CAAGTAGATATTATTTGTTG+AGG - chr5_2:17814510-17814529 Msa0760950:intron 25.0%
!!! GTTCATTTTTATACACAACT+TGG - chr5_2:17814662-17814681 Msa0760950:intron 25.0%
!!! TCACTTATTTTTACAAGAAG+TGG + chr5_2:17814881-17814900 None:intergenic 25.0%
! GAAAAAAAAGTTAAAGAAGC+TGG - chr5_2:17814899-17814918 Msa0760950:CDS 25.0%
! AGATCAGTACATGAAAAATT+AGG + chr5_2:17815027-17815046 None:intergenic 25.0%
!!! ATTTTTCATGTACTGATCTT+TGG - chr5_2:17815028-17815047 Msa0760950:CDS 25.0%
! TTAGGAATACCCTTAAAATT+GGG + chr5_2:17815256-17815275 None:intergenic 25.0%
! TTTAGGAATACCCTTAAAAT+TGG + chr5_2:17815257-17815276 None:intergenic 25.0%
!!! ATGATGCCGGTTTTATTTAT+CGG + chr5_2:17809797-17809816 None:intergenic 30.0%
TATTTCGTTACTATCACCAA+TGG - chr5_2:17809854-17809873 Msa0760950:three_prime_UTR 30.0%
TTGATGTGTGAATACAGTTA+TGG + chr5_2:17809895-17809914 None:intergenic 30.0%
!! CTGGTGATTTTGATAAGAAA+TGG + chr5_2:17809941-17809960 None:intergenic 30.0%
AAAGGGAAAAAGAAGAAGAA+GGG + chr5_2:17809995-17810014 None:intergenic 30.0%
AAAAGGGAAAAAGAAGAAGA+AGG + chr5_2:17809996-17810015 None:intergenic 30.0%
AAGAAGAAAAGTGAAGTTTG+TGG + chr5_2:17810031-17810050 None:intergenic 30.0%
ATGACATGATTAAGAGTTTG+TGG - chr5_2:17810342-17810361 Msa0760950:intron 30.0%
TAGATTGTAAAGAGCAAAGA+TGG - chr5_2:17810433-17810452 Msa0760950:intron 30.0%
AGATTGTAAAGAGCAAAGAT+GGG - chr5_2:17810434-17810453 Msa0760950:intron 30.0%
!!! CATTATTTTTGATATCCGTC+CGG - chr5_2:17810613-17810632 Msa0760950:intron 30.0%
AGATTCATTATTTATCCGGA+CGG + chr5_2:17810631-17810650 None:intergenic 30.0%
! ACCAAAGAATCACATCATTT+TGG - chr5_2:17810702-17810721 Msa0760950:intron 30.0%
TCCAAAATGATGTGATTCTT+TGG + chr5_2:17810706-17810725 None:intergenic 30.0%
TGGTCGATAATATGAGATAA+AGG + chr5_2:17810857-17810876 None:intergenic 30.0%
ATGTTAGTGTATTTGTGCTA+GGG - chr5_2:17811387-17811406 Msa0760950:intron 30.0%
CTGTGAAGTTTAGTTATTTG+AGG - chr5_2:17811508-17811527 Msa0760950:intron 30.0%
GATTATATCACACTTCTTTG+AGG + chr5_2:17811666-17811685 None:intergenic 30.0%
! TAATAGGCTAAATCCCTTTT+AGG + chr5_2:17811741-17811760 None:intergenic 30.0%
CACAAAAGTTGAATGAGATA+TGG + chr5_2:17811984-17812003 None:intergenic 30.0%
! TATCTCATTCAACTTTTGTG+TGG - chr5_2:17811984-17812003 Msa0760950:intron 30.0%
! ATTTGTTTCTTATCATACGG+AGG - chr5_2:17812272-17812291 Msa0760950:intron 30.0%
AGTTATCTTCTCATTGTTCA+TGG - chr5_2:17812335-17812354 Msa0760950:intron 30.0%
GTGTTTAAATAAAACGTGGA+TGG + chr5_2:17812553-17812572 None:intergenic 30.0%
GTATCTTTAGGTAGAACTTT+AGG - chr5_2:17812593-17812612 Msa0760950:intron 30.0%
TATTTGACTATTTGAGTGGT+TGG - chr5_2:17812722-17812741 Msa0760950:intron 30.0%
TATTTGAGTGGTTGGATATA+TGG - chr5_2:17812730-17812749 Msa0760950:intron 30.0%
ACTCTAGTGATCCTTAAAAT+CGG - chr5_2:17812841-17812860 Msa0760950:CDS 30.0%
!! TAATTTTGGGTCAGAGTAAA+TGG - chr5_2:17812899-17812918 Msa0760950:CDS 30.0%
TTTGAATGATTGTTAAGCTC+GGG - chr5_2:17813007-17813026 Msa0760950:intron 30.0%
AATGTTATAAACTGTAACCC+AGG - chr5_2:17813307-17813326 Msa0760950:intron 30.0%
ATGTTATAAACTGTAACCCA+GGG - chr5_2:17813308-17813327 Msa0760950:intron 30.0%
!!! ATAGTTTTGGTTGAATCAGA+GGG + chr5_2:17813539-17813558 None:intergenic 30.0%
!!! TATAGTTTTGGTTGAATCAG+AGG + chr5_2:17813540-17813559 None:intergenic 30.0%
! TTTTACCAACAAAGCACATA+AGG - chr5_2:17813571-17813590 Msa0760950:intron 30.0%
TTTACCAACAAAGCACATAA+GGG - chr5_2:17813572-17813591 Msa0760950:intron 30.0%
TTAAATATTGCTGCTCTTTG+AGG - chr5_2:17813613-17813632 Msa0760950:intron 30.0%
TAAATATTGCTGCTCTTTGA+GGG - chr5_2:17813614-17813633 Msa0760950:intron 30.0%
TGTGTCATGTAGTTGAAAAT+TGG - chr5_2:17813863-17813882 Msa0760950:intron 30.0%
GTGTCATGTAGTTGAAAATT+GGG - chr5_2:17813864-17813883 Msa0760950:intron 30.0%
TAATAACCAATTGAGGCTTA+TGG - chr5_2:17813999-17814018 Msa0760950:intron 30.0%
! AGTGTTTTCCTTTTACTGTA+TGG - chr5_2:17814091-17814110 Msa0760950:intron 30.0%
! TGCCATTTCACTTCTATATA+AGG + chr5_2:17814126-17814145 None:intergenic 30.0%
! TAGTTACTTTAATTGAGCTG+AGG - chr5_2:17814195-17814214 Msa0760950:intron 30.0%
! AGTTACTTTAATTGAGCTGA+GGG - chr5_2:17814196-17814215 Msa0760950:intron 30.0%
! TTGCAAGCATTTTGTTAAAG+AGG + chr5_2:17814493-17814512 None:intergenic 30.0%
TATGAATAGGCTTGTCTTAA+AGG - chr5_2:17814567-17814586 Msa0760950:CDS 30.0%
AGTAAAGAATGAAACCAGAT+AGG + chr5_2:17814730-17814749 None:intergenic 30.0%
ACTGTCTTCAACTGTATAAA+TGG - chr5_2:17814788-17814807 Msa0760950:intron 30.0%
CTGTCTTCAACTGTATAAAT+GGG - chr5_2:17814789-17814808 Msa0760950:intron 30.0%
ATTAGGATTTATGACTCATC+TGG + chr5_2:17815010-17815029 None:intergenic 30.0%
TGATCTTTGGATATGGTATA+TGG - chr5_2:17815041-17815060 Msa0760950:CDS 30.0%
CTTCATATCTCTGTATACAT+AGG + chr5_2:17815108-17815127 None:intergenic 30.0%
CTATGTATACAGAGATATGA+AGG - chr5_2:17815106-17815125 Msa0760950:CDS 30.0%
GTTTGACATACCTTAAAATG+TGG - chr5_2:17815165-17815184 Msa0760950:CDS 30.0%
! TTTTTCCAGTCCCAATTTTA+AGG - chr5_2:17815243-17815262 Msa0760950:five_prime_UTR 30.0%
! TTTTCCAGTCCCAATTTTAA+GGG - chr5_2:17815244-17815263 Msa0760950:five_prime_UTR 30.0%
GATAGTAACGAAATAAGACG+AGG + chr5_2:17809849-17809868 None:intergenic 35.0%
AGTTGAAGCATGGAGTTTAA+TGG + chr5_2:17809967-17809986 None:intergenic 35.0%
GTGGATATTGTGAGAGAAAA+GGG + chr5_2:17810012-17810031 None:intergenic 35.0%
TGTGGATATTGTGAGAGAAA+AGG + chr5_2:17810013-17810032 None:intergenic 35.0%
TGTTACTATGGATTCAAGAG+AGG - chr5_2:17810477-17810496 Msa0760950:intron 35.0%
!!! TCACATCATTTTGGAACTCT+TGG - chr5_2:17810711-17810730 Msa0760950:intron 35.0%
GCTTCATAAGTATTTCACCT+GGG + chr5_2:17810903-17810922 None:intergenic 35.0%
TGCTTCATAAGTATTTCACC+TGG + chr5_2:17810904-17810923 None:intergenic 35.0%
GGTGAAATACTTATGAAGCA+TGG - chr5_2:17810904-17810923 Msa0760950:intron 35.0%
CGAAATACATAAATGTGTGG+GGG + chr5_2:17811244-17811263 None:intergenic 35.0%
CCGAAATACATAAATGTGTG+GGG + chr5_2:17811245-17811264 None:intergenic 35.0%
CCCCACACATTTATGTATTT+CGG - chr5_2:17811242-17811261 Msa0760950:intron 35.0%
CCCGAAATACATAAATGTGT+GGG + chr5_2:17811246-17811265 None:intergenic 35.0%
CCCACACATTTATGTATTTC+GGG - chr5_2:17811243-17811262 Msa0760950:intron 35.0%
CCACACATTTATGTATTTCG+GGG - chr5_2:17811244-17811263 Msa0760950:intron 35.0%
CATGTTAGTGTATTTGTGCT+AGG - chr5_2:17811386-17811405 Msa0760950:intron 35.0%
ACTAGTGAGTGCAACAAATA+TGG + chr5_2:17811476-17811495 None:intergenic 35.0%
! TGTTAATTTGGTTGGGACAA+TGG - chr5_2:17811560-17811579 Msa0760950:intron 35.0%
! AGTGACATAACTTCCCTTTT+AGG + chr5_2:17811777-17811796 None:intergenic 35.0%
CTCTAGCAAAAAACTTCCAA+CGG - chr5_2:17811865-17811884 Msa0760950:intron 35.0%
ATTACATAACGTGCTTCCTT+AGG + chr5_2:17812123-17812142 None:intergenic 35.0%
CGTATGTAAAGAAATAGCAG+AGG + chr5_2:17812367-17812386 None:intergenic 35.0%
CAACCTTTGTGGAGATATAA+AGG - chr5_2:17812790-17812809 Msa0760950:CDS 35.0%
TAGCCTTTATATCTCCACAA+AGG + chr5_2:17812796-17812815 None:intergenic 35.0%
AGTTTGCGAAATGTTGCATT+TGG - chr5_2:17812941-17812960 Msa0760950:CDS 35.0%
GTTTGCGAAATGTTGCATTT+GGG - chr5_2:17812942-17812961 Msa0760950:CDS 35.0%
!! ATTTGGGTTGCAATTTCCAA+CGG - chr5_2:17812958-17812977 Msa0760950:CDS 35.0%
!! GTTTAAAACAAAAGCACCGT+TGG + chr5_2:17812977-17812996 None:intergenic 35.0%
!!! CGGTGCTTTTGTTTTAAACT+AGG - chr5_2:17812978-17812997 Msa0760950:CDS 35.0%
! AGCATGATTTTCATGTCCAA+AGG - chr5_2:17813206-17813225 Msa0760950:intron 35.0%
!! AAGAAGCATCTGTGTATTCA+CGG - chr5_2:17813235-17813254 Msa0760950:intron 35.0%
!! GTATTTCATGCGGTTTTGAT+GGG - chr5_2:17813703-17813722 Msa0760950:intron 35.0%
! ACCACCTACTCTTTTGATAT+AGG - chr5_2:17813741-17813760 Msa0760950:intron 35.0%
CAAGCCTATATCAAAAGAGT+AGG + chr5_2:17813748-17813767 None:intergenic 35.0%
TTGAAAATTGGGTGCATATG+TGG - chr5_2:17813875-17813894 Msa0760950:intron 35.0%
GTGTGAGTAATAACCAATTG+AGG - chr5_2:17813992-17814011 Msa0760950:intron 35.0%
! TCTTTTCCATAAGCCTCAAT+TGG + chr5_2:17814008-17814027 None:intergenic 35.0%
ATAGAAGTGAAATGGCACTA+CGG - chr5_2:17814129-17814148 Msa0760950:intron 35.0%
!! CATATAGTTTGCTAGTGTAG+CGG - chr5_2:17814168-17814187 Msa0760950:intron 35.0%
! GTTACTTTAATTGAGCTGAG+GGG - chr5_2:17814197-17814216 Msa0760950:intron 35.0%
TTACTAGTGTACTGAGATAC+AGG - chr5_2:17814400-17814419 Msa0760950:intron 35.0%
! GAGGATGCATGATTTCTTTT+TGG - chr5_2:17814529-17814548 Msa0760950:intron 35.0%
GATAGGAATACACACAATGA+CGG + chr5_2:17814713-17814732 None:intergenic 35.0%
TCATTGTGTGTATTCCTATC+TGG - chr5_2:17814713-17814732 Msa0760950:intron 35.0%
! CATGTACTGATCTTTGGATA+TGG - chr5_2:17815034-17815053 Msa0760950:CDS 35.0%
CTCTGTATACATAGGTAATC+AGG + chr5_2:17815100-17815119 None:intergenic 35.0%
AATACCCTTAAAATTGGGAC+TGG + chr5_2:17815251-17815270 None:intergenic 35.0%
AGTAACGAAATAAGACGAGG+TGG + chr5_2:17809846-17809865 None:intergenic 40.0%
! GTTGATTCTAACGTTGCCAT+TGG + chr5_2:17809873-17809892 None:intergenic 40.0%
GCATGGAGTTTAATGGAATC+TGG + chr5_2:17809960-17809979 None:intergenic 40.0%
AAGGGATTGAAGTTGAAGCA+TGG + chr5_2:17809977-17809996 None:intergenic 40.0%
!! GAGTGTTTTGGATTTGGAAG+AGG + chr5_2:17810054-17810073 None:intergenic 40.0%
!! GTAGCAGAGTGTTTTGGATT+TGG + chr5_2:17810060-17810079 None:intergenic 40.0%
!! TAAAGCGTAGCAGAGTGTTT+TGG + chr5_2:17810066-17810085 None:intergenic 40.0%
AAGGCAAGTTAAAGACAACG+AGG + chr5_2:17810166-17810185 None:intergenic 40.0%
!! TCGTTGTCTTTAACTTGCCT+TGG - chr5_2:17810165-17810184 Msa0760950:CDS 40.0%
TCTTTCTAAGCCGGATATCA+AGG - chr5_2:17810190-17810209 Msa0760950:intron 40.0%
CCAAAGAGATCCTTGATATC+CGG + chr5_2:17810203-17810222 None:intergenic 40.0%
AAGGATCTCTTTGGTCAATG+TGG - chr5_2:17810209-17810228 Msa0760950:intron 40.0%
TGGAACTGTAATTGACGTTG+AGG - chr5_2:17810229-17810248 Msa0760950:intron 40.0%
TGTAAAGAGCAAAGATGGGA+AGG - chr5_2:17810438-17810457 Msa0760950:intron 40.0%
GTAAAGAGCAAAGATGGGAA+GGG - chr5_2:17810439-17810458 Msa0760950:intron 40.0%
TACTATGGATTCAAGAGAGG+AGG - chr5_2:17810480-17810499 Msa0760950:intron 40.0%
GACATACACTGTGCAATGAA+AGG - chr5_2:17810662-17810681 Msa0760950:intron 40.0%
AAAGGAGTTGCGAGTCATAA+GGG + chr5_2:17810839-17810858 None:intergenic 40.0%
TAAAGGAGTTGCGAGTCATA+AGG + chr5_2:17810840-17810859 None:intergenic 40.0%
CATAAGTATTTCACCTGGGA+GGG + chr5_2:17810899-17810918 None:intergenic 40.0%
TCATAAGTATTTCACCTGGG+AGG + chr5_2:17810900-17810919 None:intergenic 40.0%
AATTAGACAGGAAACGAGAG+TGG + chr5_2:17811000-17811019 None:intergenic 40.0%
!!! GCTTTTTCGACACTCAACTA+TGG - chr5_2:17811055-17811074 Msa0760950:intron 40.0%
CCCCGAAATACATAAATGTG+TGG + chr5_2:17811247-17811266 None:intergenic 40.0%
CGCATACAAACAGATATGAG+CGG - chr5_2:17811298-17811317 Msa0760950:intron 40.0%
! CAAAGCATCATCTCTATTCC+TGG + chr5_2:17811904-17811923 None:intergenic 40.0%
GACATCTAATTGTGTGGTTC+AGG - chr5_2:17812020-17812039 Msa0760950:intron 40.0%
TGTGTGGTTCAGGAAATATC+AGG - chr5_2:17812030-17812049 Msa0760950:intron 40.0%
AAATATCAGGCCGGATAGTA+AGG - chr5_2:17812043-17812062 Msa0760950:intron 40.0%
AATATCAGGCCGGATAGTAA+GGG - chr5_2:17812044-17812063 Msa0760950:intron 40.0%
CAAACTCTACCCTTACTATC+CGG + chr5_2:17812056-17812075 None:intergenic 40.0%
AGTAAGGGTAGAGTTTGCAA+AGG - chr5_2:17812059-17812078 Msa0760950:intron 40.0%
GTAAGGGTAGAGTTTGCAAA+GGG - chr5_2:17812060-17812079 Msa0760950:intron 40.0%
TGTTTCTTATCATACGGAGG+AGG - chr5_2:17812275-17812294 Msa0760950:intron 40.0%
ATTGTTAAGCTCGGGTATGT+AGG - chr5_2:17813015-17813034 Msa0760950:intron 40.0%
GATGCTTCTTCTAACTCCTT+TGG + chr5_2:17813225-17813244 None:intergenic 40.0%
!! AGAAGCATCTGTGTATTCAC+GGG - chr5_2:17813236-17813255 Msa0760950:intron 40.0%
CAGAGCTTCTTAGGGATATA+GGG - chr5_2:17813259-17813278 Msa0760950:intron 40.0%
TAAAATTGTTGAGGTGACCG+CGG + chr5_2:17813288-17813307 None:intergenic 40.0%
AGAGGAAAGGCAGATTCAAA+GGG + chr5_2:17813490-17813509 None:intergenic 40.0%
CTTTCCCTTATGTGCTTTGT+TGG + chr5_2:17813579-17813598 None:intergenic 40.0%
CAAAGCACATAAGGGAAAGA+AGG - chr5_2:17813580-17813599 Msa0760950:intron 40.0%
AAATACCGCCAATAGGAACA+AGG + chr5_2:17813689-17813708 None:intergenic 40.0%
!! GGTATTTCATGCGGTTTTGA+TGG - chr5_2:17813702-17813721 Msa0760950:intron 40.0%
ATCAAAAGAGTAGGTGGTAC+TGG + chr5_2:17813739-17813758 None:intergenic 40.0%
GCCTATATCAAAAGAGTAGG+TGG + chr5_2:17813745-17813764 None:intergenic 40.0%
! AGGCTTGAATTTTGCAAACG+AGG - chr5_2:17813761-17813780 Msa0760950:intron 40.0%
TCTGCAATATGCCAGTGAAA+AGG - chr5_2:17813960-17813979 Msa0760950:intron 40.0%
! ACTGATGCTTTCCTTTTCAC+TGG + chr5_2:17813974-17813993 None:intergenic 40.0%
TTGAGGCTTATGGAAAAGAG+TGG - chr5_2:17814009-17814028 Msa0760950:intron 40.0%
TGAGGCTTATGGAAAAGAGT+GGG - chr5_2:17814010-17814029 Msa0760950:intron 40.0%
TTAATTGAGCTGAGGGGATA+AGG - chr5_2:17814203-17814222 Msa0760950:intron 40.0%
AGCTTCAATAACACACTTGG+GGG + chr5_2:17814690-17814709 None:intergenic 40.0%
GAGCTTCAATAACACACTTG+GGG + chr5_2:17814691-17814710 None:intergenic 40.0%
GGAGCTTCAATAACACACTT+GGG + chr5_2:17814692-17814711 None:intergenic 40.0%
! AGGAGTAGTGATGATGATGC+CGG + chr5_2:17809810-17809829 None:intergenic 45.0%
GAGGTGGAGAAGTAGATAAG+AGG + chr5_2:17809830-17809849 None:intergenic 45.0%
ACTCTGCTACGCTTTACAAG+AGG - chr5_2:17810070-17810089 Msa0760950:CDS 45.0%
CCGGATATCAAGGATCTCTT+TGG - chr5_2:17810200-17810219 Msa0760950:intron 45.0%
AGCAAAGATGGGAAGGGAAA+AGG - chr5_2:17810445-17810464 Msa0760950:intron 45.0%
AAGGAGTTGCGAGTCATAAG+GGG + chr5_2:17810838-17810857 None:intergenic 45.0%
GAGACTCTAACACCTCAAGA+AGG + chr5_2:17810937-17810956 None:intergenic 45.0%
GGCACATGCATACATGTATC+GGG + chr5_2:17810975-17810994 None:intergenic 45.0%
GGGCACATGCATACATGTAT+CGG + chr5_2:17810976-17810995 None:intergenic 45.0%
TTCGACACTCAACTATGGCT+TGG - chr5_2:17811060-17811079 Msa0760950:intron 45.0%
!! ACTCAACTATGGCTTGGTAC+AGG - chr5_2:17811066-17811085 Msa0760950:intron 45.0%
TTCGGGGAATCACAAATCAG+AGG - chr5_2:17811260-17811279 Msa0760950:intron 45.0%
ATTTGTGCTAGGGTTGTGTC+TGG - chr5_2:17811397-17811416 Msa0760950:intron 45.0%
TTGAAGCACGAAGACAACTG+TGG + chr5_2:17811426-17811445 None:intergenic 45.0%
TTTGGCATAGCATGTTCAGC+TGG + chr5_2:17811535-17811554 None:intergenic 45.0%
AGGGAAGTTATGTCACTCTG+CGG - chr5_2:17811780-17811799 Msa0760950:intron 45.0%
TGGAGCTTAGTTTAGTCCGT+TGG + chr5_2:17811884-17811903 None:intergenic 45.0%
!! AACGGACTAAACTAAGCTCC+AGG - chr5_2:17811883-17811902 Msa0760950:intron 45.0%
TGGTTCAGGAAATATCAGGC+CGG - chr5_2:17812034-17812053 Msa0760950:intron 45.0%
TAACGTGCTTCCTTAGGAGT+GGG + chr5_2:17812117-17812136 None:intergenic 45.0%
ATAACGTGCTTCCTTAGGAG+TGG + chr5_2:17812118-17812137 None:intergenic 45.0%
TAGATCTTGCTTTCCACGCA+AGG + chr5_2:17812158-17812177 None:intergenic 45.0%
TCAAAACACCAGTTTCAGCC+AGG - chr5_2:17812208-17812227 Msa0760950:intron 45.0%
CAAAACACCAGTTTCAGCCA+GGG - chr5_2:17812209-17812228 Msa0760950:intron 45.0%
TTGTCTTTCAAACCCCTGGT+GGG - chr5_2:17812232-17812251 Msa0760950:intron 45.0%
! CTGCCATTTCTGCTTTGCAA+GGG - chr5_2:17812307-17812326 Msa0760950:intron 45.0%
CTTCCCTTGCAAAGCAGAAA+TGG + chr5_2:17812313-17812332 None:intergenic 45.0%
CATTTCTGCTTTGCAAGGGA+AGG - chr5_2:17812311-17812330 Msa0760950:intron 45.0%
! GATGCAGCAGCATTTTCCAA+AGG + chr5_2:17813043-17813062 None:intergenic 45.0%
GACGTCAATCGAGATAGAAG+TGG - chr5_2:17813075-17813094 Msa0760950:intron 45.0%
GCAGAGCTTCTTAGGGATAT+AGG - chr5_2:17813258-17813277 Msa0760950:intron 45.0%
AGCTTCTTAGGGATATAGGG+TGG - chr5_2:17813262-17813281 Msa0760950:intron 45.0%
CACGCAAAATGAGTTTCCCT+GGG + chr5_2:17813327-17813346 None:intergenic 45.0%
ACACGCAAAATGAGTTTCCC+TGG + chr5_2:17813328-17813347 None:intergenic 45.0%
CAATGGAGCGCATACACAAA+GGG + chr5_2:17813409-17813428 None:intergenic 45.0%
ACAATGGAGCGCATACACAA+AGG + chr5_2:17813410-17813429 None:intergenic 45.0%
ACATGTTGGAGCACGAACAA+TGG + chr5_2:17813426-17813445 None:intergenic 45.0%
AGACGGTCAATGACACATGT+TGG + chr5_2:17813440-17813459 None:intergenic 45.0%
AGGCAGATTCAAAGGGAGAA+CGG + chr5_2:17813483-17813502 None:intergenic 45.0%
CAGAGGAAAGGCAGATTCAA+AGG + chr5_2:17813491-17813510 None:intergenic 45.0%
!! TGCTCTTTGAGGGTTTTGCT+TGG - chr5_2:17813624-17813643 Msa0760950:intron 45.0%
!! GCTCTTTGAGGGTTTTGCTT+GGG - chr5_2:17813625-17813644 Msa0760950:intron 45.0%
CCTATTGGCGGTATTTCATG+CGG - chr5_2:17813693-17813712 Msa0760950:intron 45.0%
GGGTGCATATGTGGCTAATA+CGG - chr5_2:17813884-17813903 Msa0760950:intron 45.0%
ATATGTGGCTAATACGGCCA+TGG - chr5_2:17813890-17813909 Msa0760950:intron 45.0%
CGGATGCATCATAAGGAGTT+GGG - chr5_2:17813933-17813952 Msa0760950:intron 45.0%
ATGCATCATAAGGAGTTGGG+AGG - chr5_2:17813936-17813955 Msa0760950:intron 45.0%
TGCATCATAAGGAGTTGGGA+GGG - chr5_2:17813937-17813956 Msa0760950:intron 45.0%
GAGGCTTATGGAAAAGAGTG+GGG - chr5_2:17814011-17814030 Msa0760950:intron 45.0%
ATGGAAAAGAGTGGGGACAT+AGG - chr5_2:17814018-17814037 Msa0760950:intron 45.0%
TGGAAAAGAGTGGGGACATA+GGG - chr5_2:17814019-17814038 Msa0760950:intron 45.0%
! TCTAACTTGCGCTGTAGTGA+TGG - chr5_2:17814056-17814075 Msa0760950:intron 45.0%
AAATGGCACTACGGTGAACA+AGG - chr5_2:17814138-17814157 Msa0760950:intron 45.0%
CTACTAAAGCGCGCTATTTG+TGG - chr5_2:17814442-17814461 Msa0760950:intron 45.0%
CGGAGCTTCAATAACACACT+TGG + chr5_2:17814693-17814712 None:intergenic 45.0%
TCTGTTACCTATCCCTTTGC+AGG - chr5_2:17814841-17814860 Msa0760950:CDS 45.0%
AGTAACTCCTGCAAAGGGAT+AGG + chr5_2:17814851-17814870 None:intergenic 45.0%
ATCCCTTTGCAGGAGTTACT+TGG - chr5_2:17814851-17814870 Msa0760950:CDS 45.0%
GTCCAAGTAACTCCTGCAAA+GGG + chr5_2:17814856-17814875 None:intergenic 45.0%
ACTTCTTCACTTCCAGCTTC+TGG + chr5_2:17814962-17814981 None:intergenic 45.0%
GAGTAGAAACCTCTACAAGC+TGG - chr5_2:17815067-17815086 Msa0760950:CDS 45.0%
GGTAAAACTCCAGCTTGTAG+AGG + chr5_2:17815079-17815098 None:intergenic 45.0%
!!! ATCTATTTTTATTTTATTTT+TGG - chr5_2:17810547-17810566 Msa0760950:intron 5.0%
!!! AATTAAATAATTAATTTTAC+TGG - chr5_2:17811016-17811035 Msa0760950:intron 5.0%
!! AAAAATGAATATAAAAATAT+TGG - chr5_2:17811955-17811974 Msa0760950:intron 5.0%
GCCTTGGTCTCTTTCTAAGC+CGG - chr5_2:17810181-17810200 Msa0760950:CDS 50.0%
TCCGGCTTAGAAAGAGACCA+AGG + chr5_2:17810185-17810204 None:intergenic 50.0%
CATGGCACTTCTCCTTCTTG+AGG - chr5_2:17810922-17810941 Msa0760950:intron 50.0%
TAGACAGGAAACGAGAGTGG+CGG + chr5_2:17810997-17811016 None:intergenic 50.0%
! CATAAATGTGTGGGGGCACA+GGG + chr5_2:17811237-17811256 None:intergenic 50.0%
! ACATAAATGTGTGGGGGCAC+AGG + chr5_2:17811238-17811257 None:intergenic 50.0%
GAAGTTATGTCACTCTGCGG+TGG - chr5_2:17811783-17811802 Msa0760950:intron 50.0%
TCTATGCATCCAACCTTGCG+TGG - chr5_2:17812142-17812161 Msa0760950:intron 50.0%
TCTTGCTTTCCACGCAAGGT+TGG + chr5_2:17812154-17812173 None:intergenic 50.0%
AAGACAACCCTGGCTGAAAC+TGG + chr5_2:17812219-17812238 None:intergenic 50.0%
AGGGGTTTGAAAGACAACCC+TGG + chr5_2:17812229-17812248 None:intergenic 50.0%
AGGGTTGTCTTTCAAACCCC+TGG - chr5_2:17812228-17812247 Msa0760950:intron 50.0%
GTTGTCTTTCAAACCCCTGG+TGG - chr5_2:17812231-17812250 Msa0760950:intron 50.0%
! GCTGCCATTTCTGCTTTGCA+AGG - chr5_2:17812306-17812325 Msa0760950:intron 50.0%
ATTCACGGGCAGAGCTTCTT+AGG - chr5_2:17813250-17813269 Msa0760950:intron 50.0%
TTCACGGGCAGAGCTTCTTA+GGG - chr5_2:17813251-17813270 Msa0760950:intron 50.0%
GCATACACAAAGGGACAGAG+TGG + chr5_2:17813400-17813419 None:intergenic 50.0%
ACACAGCACATGCAGAGGAA+AGG + chr5_2:17813503-17813522 None:intergenic 50.0%
TTTCCTCTGCATGTGCTGTG+TGG - chr5_2:17813502-17813521 Msa0760950:intron 50.0%
! TCTGCCTGCCTTGTTCCTAT+TGG - chr5_2:17813678-17813697 Msa0760950:intron 50.0%
CCGCATGAAATACCGCCAAT+AGG + chr5_2:17813696-17813715 None:intergenic 50.0%
GGCCATGGTGGTAAGAATGT+GGG - chr5_2:17813905-17813924 Msa0760950:intron 50.0%
AGCCCACATTCTTACCACCA+TGG + chr5_2:17813910-17813929 None:intergenic 50.0%
TGGTGGTAAGAATGTGGGCT+TGG - chr5_2:17813910-17813929 Msa0760950:intron 50.0%
TGGTAAGAATGTGGGCTTGG+CGG - chr5_2:17813913-17813932 Msa0760950:intron 50.0%
GCGGATGCATCATAAGGAGT+TGG - chr5_2:17813932-17813951 Msa0760950:intron 50.0%
AAAGAGTGGGGACATAGGGT+TGG - chr5_2:17814023-17814042 Msa0760950:intron 50.0%
GAGGGGATAAGGTGTGTGTA+TGG - chr5_2:17814214-17814233 Msa0760950:intron 50.0%
CGTCCAAGTAACTCCTGCAA+AGG + chr5_2:17814857-17814876 None:intergenic 50.0%
GGATTCAAGAGAGGAGGCTC+AGG - chr5_2:17810486-17810505 Msa0760950:intron 55.0%
AGACAGGAAACGAGAGTGGC+GGG + chr5_2:17810996-17811015 None:intergenic 55.0%
ACTCTGCGGTGGCATGTAGT+AGG - chr5_2:17811794-17811813 Msa0760950:intron 55.0%
ACCCAGCAGATTTCCCACCA+GGG + chr5_2:17812248-17812267 None:intergenic 55.0%
TACCCAGCAGATTTCCCACC+AGG + chr5_2:17812249-17812268 None:intergenic 55.0%
GGTGGGAAATCTGCTGGGTA+TGG - chr5_2:17812249-17812268 Msa0760950:intron 55.0%
CTCGGGTATGTAGGTGCCTT+TGG - chr5_2:17813024-17813043 Msa0760950:intron 55.0%
TTAGGGATATAGGGTGGCCG+CGG - chr5_2:17813268-17813287 Msa0760950:intron 55.0%
! TAGACGGAGGGTGCAGTACT+GGG + chr5_2:17813351-17813370 None:intergenic 55.0%
AGATGCAGTGGGTAGACGGA+GGG + chr5_2:17813363-17813382 None:intergenic 55.0%
ACGCAGATGCAGTGGGTAGA+CGG + chr5_2:17813367-17813386 None:intergenic 55.0%
ATCGCGCACACAGAGCTAGA+CGG + chr5_2:17813457-17813476 None:intergenic 55.0%
GAACCACACAGCACATGCAG+AGG + chr5_2:17813508-17813527 None:intergenic 55.0%
! GCCTGCCTTGTTCCTATTGG+CGG - chr5_2:17813681-17813700 Msa0760950:intron 55.0%
ACCGCCAATAGGAACAAGGC+AGG + chr5_2:17813685-17813704 None:intergenic 55.0%
TGTGGCTAATACGGCCATGG+TGG - chr5_2:17813893-17813912 Msa0760950:intron 55.0%
CGGCCATGGTGGTAAGAATG+TGG - chr5_2:17813904-17813923 Msa0760950:intron 55.0%
! GGCTTGGCGGATGCATCATA+AGG - chr5_2:17813926-17813945 Msa0760950:intron 55.0%
TGGCACTACGGTGAACAAGG+AGG - chr5_2:17814141-17814160 Msa0760950:intron 55.0%
GAGTCGTAAGGGTGGCATGG+TGG + chr5_2:17810877-17810896 None:intergenic 60.0%
AGGGAGTCGTAAGGGTGGCA+TGG + chr5_2:17810880-17810899 None:intergenic 60.0%
CACCTGGGAGGGAGTCGTAA+GGG + chr5_2:17810888-17810907 None:intergenic 60.0%
TCACCTGGGAGGGAGTCGTA+AGG + chr5_2:17810889-17810908 None:intergenic 60.0%
TTAGGAGTGGGAGCTGGAGG+AGG + chr5_2:17812105-17812124 None:intergenic 60.0%
TCCTCCAGCTCCCACTCCTA+AGG - chr5_2:17812104-17812123 Msa0760950:intron 60.0%
TCCTTAGGAGTGGGAGCTGG+AGG + chr5_2:17812108-17812127 None:intergenic 60.0%
GCTTCCTTAGGAGTGGGAGC+TGG + chr5_2:17812111-17812130 None:intergenic 60.0%
ACCCCTGGTGGGAAATCTGC+TGG - chr5_2:17812243-17812262 Msa0760950:intron 60.0%
CCCAGCAGATTTCCCACCAG+GGG + chr5_2:17812247-17812266 None:intergenic 60.0%
CCCCTGGTGGGAAATCTGCT+GGG - chr5_2:17812244-17812263 Msa0760950:intron 60.0%
! GTAGACGGAGGGTGCAGTAC+TGG + chr5_2:17813352-17813371 None:intergenic 60.0%
CAGATGCAGTGGGTAGACGG+AGG + chr5_2:17813364-17813383 None:intergenic 60.0%
CGACAGGACGCAGATGCAGT+GGG + chr5_2:17813374-17813393 None:intergenic 60.0%
ACGACAGGACGCAGATGCAG+TGG + chr5_2:17813375-17813394 None:intergenic 60.0%
AGGGACAGAGTGGTCACGAC+AGG + chr5_2:17813390-17813409 None:intergenic 60.0%
GACGACACGCAACCAGAAGC+TGG - chr5_2:17814947-17814966 Msa0760950:CDS 60.0%
CTGGGAGGGAGTCGTAAGGG+TGG + chr5_2:17810885-17810904 None:intergenic 65.0%
CACCCTTACGACTCCCTCCC+AGG - chr5_2:17810883-17810902 Msa0760950:intron 65.0%
GGAGCTGGAGGAGGTGGAGG+AGG + chr5_2:17812096-17812115 None:intergenic 70.0%
GTGGGAGCTGGAGGAGGTGG+AGG + chr5_2:17812099-17812118 None:intergenic 70.0%
GGAGTGGGAGCTGGAGGAGG+TGG + chr5_2:17812102-17812121 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 17809774 17815292 17809774 ID=Msa0760950;Name=Msa0760950
chr5_2 mRNA 17809774 17815292 17809774 ID=Msa0760950-mRNA-1;Parent=Msa0760950;Name=Msa0760950-mRNA-1;_AED=0.12;_eAED=0.12;_QI=99|1|1|1|0.66|1|4|271|308
chr5_2 exon 17809774 17810203 17809774 ID=Msa0760950-mRNA-1:exon:7807;Parent=Msa0760950-mRNA-1
chr5_2 exon 17812734 17813024 17812734 ID=Msa0760950-mRNA-1:exon:7806;Parent=Msa0760950-mRNA-1
chr5_2 exon 17814532 17814630 17814532 ID=Msa0760950-mRNA-1:exon:7805;Parent=Msa0760950-mRNA-1
chr5_2 exon 17814816 17815292 17814816 ID=Msa0760950-mRNA-1:exon:7804;Parent=Msa0760950-mRNA-1
chr5_2 five_prime_UTR 17815194 17815292 17815194 ID=Msa0760950-mRNA-1:five_prime_utr;Parent=Msa0760950-mRNA-1
chr5_2 CDS 17814816 17815193 17814816 ID=Msa0760950-mRNA-1:cds;Parent=Msa0760950-mRNA-1
chr5_2 CDS 17814532 17814630 17814532 ID=Msa0760950-mRNA-1:cds;Parent=Msa0760950-mRNA-1
chr5_2 CDS 17812734 17813024 17812734 ID=Msa0760950-mRNA-1:cds;Parent=Msa0760950-mRNA-1
chr5_2 CDS 17810045 17810203 17810045 ID=Msa0760950-mRNA-1:cds;Parent=Msa0760950-mRNA-1
chr5_2 three_prime_UTR 17809774 17810044 17809774 ID=Msa0760950-mRNA-1:three_prime_utr;Parent=Msa0760950-mRNA-1
Gene Sequence

>Msa0760950

ATGGCAACGTTAGAATCAACCATAACTGTATTCACACATCAACGTTTCTCAAATAATAACAACTACCATTTCTTATCAAAATCACCAGATTCCATTAAACTCCATGCTTCAACTTCAATCCCTTCTTCTTCTTTTTCCCTTTTCTCTCACAATATCCACAAACTTCACTTTTCTTCTTCCTCTTCCAAATCCAAAACACTCTGCTACGCTTTACAAGAGGTAACAGAAGCAGCAACAACAACTGAAGAAGATGAAGCAAAAACAGAGACATTGAACATCGTTAAGAAGAACCTCGTTGTCTTTAACTTGCCTTGGTCTCTTTCTAAGCCGGATATCAAGGATCTCTTTGGTCAATGTGGAACTGTAATTGACGTTGAGATTGTAAAGAGCAAAGATGGGAAGGGAAAAGGTTATACATTTGTTACTATGGATTCAAGAGAGGAGGCTCAGGCTGCTGTCGATAAATTTAATGCAGCTGAAATATCAGGCCGGATAGTAAGGGTAGAGTTTGCAAAGGGATTTAAGAAACCTCCTCCACCTCCTCCAGCTCCCACTCCTAAGGAAGCACGTTATGTAATCTATGCATCCAACCTTGCGTGGAAAGCAAGATCTACACATCTCAGAGACATCTTCACTGAGAATTTCAAAACACCAGTTTCAGCCAGGGTTGTCTTTCAAACCCCTGGTGGGAAATCTGCTGGGTATGGATTTGTTTCTTATCATACGGAGGAGGAAGCAGAAGCTGCCATTTCTGCTTTGCAAGGGAAGGAGTTACTTGGACGACCACTTCTTGTAAAAATAAGTGAAAAAAAAGTTAAAGAAGCTGGAAGTGAAGTAGTTGAAGAGAAAGTTGACGACACGCAACCAGAAGCTGGAAGTGAAGAAGTTGAAGAGAAAGTTGATGACGCTCAACCAGATGAGTCATAA

Protein sequence

>Msa0760950

MATLESTITVFTHQRFSNNNNYHFLSKSPDSIKLHASTSIPSSSFSLFSHNIHKLHFSSSSSKSKTLCYALQEVTEAATTTEEDEAKTETLNIVKKNLVVFNLPWSLSKPDIKDLFGQCGTVIDVEIVKSKDGKGKGYTFVTMDSREEAQAAVDKFNAAEISGRIVRVEFAKGFKKPPPPPPAPTPKEARYVIYASNLAWKARSTHLRDIFTENFKTPVSARVVFQTPGGKSAGYGFVSYHTEEEAEAAISALQGKELLGRPLLVKISEKKVKEAGSEVVEEKVDDTQPEAGSEEVEEKVDDAQPDES*