AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1144420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1144420 MtrunA17_Chr4g0036031 92.286 350 7 1 1 330 1 350 0.0 652
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1144420 AT2G21280.2 75.786 318 54 2 32 329 47 361 3.91e-174 487
Msa1144420 AT2G21280.1 75.786 318 54 2 32 329 32 346 6.40e-174 486

Find 116 sgRNAs with CRISPR-Local

Find 345 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAAGAAATAATTGCTTTA+AGG 0.095577 7_4:+20403677 None:intergenic
CTGTCGTATTCTTTATTCTT+TGG 0.228424 7_4:-20403636 Msa1144420:three_prime_UTR
GCAACAGCCGTTGGTTATTA+TGG 0.241302 7_4:-20406427 Msa1144420:intron
TGGTTTCTTCGTGGTTAATT+TGG 0.243842 7_4:+20409263 None:intergenic
TTCAACAGGAGTTGTGAATT+TGG 0.265572 7_4:-20406878 Msa1144420:CDS
TGAATACAATCTTTCCATTC+TGG 0.270270 7_4:+20406904 None:intergenic
TCAAGAAATAATTGCTTTAA+GGG 0.286542 7_4:+20403678 None:intergenic
TCTGATAATCGCACAGGATT+TGG 0.287636 7_4:+20403966 None:intergenic
ATGCACTAAACTTAATTTGC+AGG 0.299769 7_4:+20403287 None:intergenic
TTTGCACTCAAGGCTGTTCT+TGG 0.310048 7_4:-20403885 Msa1144420:CDS
TATTCTTTATTCTTTGGAAT+TGG 0.319317 7_4:-20403630 Msa1144420:three_prime_UTR
TGAACAGCTGGGAAATGTTT+TGG 0.324340 7_4:-20403937 Msa1144420:CDS
ATTCGCATCGGTGTTGTTCT+TGG 0.330353 7_4:-20405645 Msa1144420:CDS
TCCATCTGGAAAGGATTATC+TGG 0.334195 7_4:-20406177 Msa1144420:CDS
ATAGCAAAAGATTGATCTTA+TGG 0.337887 7_4:-20409135 Msa1144420:exon
AGTGAATAGTTTACCTTTGT+AGG 0.341005 7_4:+20404509 None:intergenic
TGAAATTCGACCCAAAGTTT+TGG 0.354784 7_4:-20406455 Msa1144420:CDS
AGGCTAGGAGGTTCAGAGTT+TGG 0.361453 7_4:-20408834 Msa1144420:CDS
TCTTTCTTCAAATTGACAAT+AGG 0.382025 7_4:-20403531 Msa1144420:three_prime_UTR
GATTGTATTCAGGGTTCAAC+AGG 0.387898 7_4:-20406892 Msa1144420:CDS
CAAATGATCATATCTGTAAC+TGG 0.388348 7_4:-20407858 Msa1144420:CDS
ATCAGAATTGTGTGAACAGC+TGG 0.389039 7_4:-20403949 Msa1144420:CDS
AGAATGGAAAGATTGTATTC+AGG 0.393704 7_4:-20406902 Msa1144420:CDS
AGATCCCTCTTGTTAATTCT+CGG 0.393796 7_4:+20409191 None:intergenic
TCATTGAGATTATTCTTGTA+TGG 0.400953 7_4:+20409243 None:intergenic
GAAGACCATCTGGTACTTAT+CGG 0.402363 7_4:+20406847 None:intergenic
TTTCCAGGAGTCAAGATTGC+TGG 0.403323 7_4:-20406931 Msa1144420:CDS
TGTTGCACTAACCAAAACTT+TGG 0.420203 7_4:+20406444 None:intergenic
GAATGGAAAGATTGTATTCA+GGG 0.421699 7_4:-20406901 Msa1144420:CDS
ATATCTGTAACTGGAGCAAC+AGG 0.436339 7_4:-20407849 Msa1144420:CDS
TTTGATGAACAAAGTCCATC+TGG 0.438138 7_4:-20406191 Msa1144420:CDS
CAGTTTGAAGAAATACTTTG+AGG 0.439427 7_4:+20403229 None:intergenic
ATGTTTGCCGGCGGACCTCT+AGG 0.442511 7_4:-20404894 Msa1144420:CDS
AGAAAGAAATCAAGGAGAGC+AGG 0.446253 7_4:-20406661 Msa1144420:CDS
TCCCCAGCAATCTTGACTCC+TGG 0.446910 7_4:+20406928 None:intergenic
ACTTTGGGTCGAATTTCATC+TGG 0.451563 7_4:+20406460 None:intergenic
GGGTCGTCCCTCATGGCTGC+CGG 0.452471 7_4:-20403916 Msa1144420:CDS
TTTCCAGTGAAAGACTTTCC+AGG 0.460284 7_4:-20406946 Msa1144420:intron
TCTGAACCTCCTAGCCTCTC+TGG 0.462277 7_4:+20408840 None:intergenic
GGTTGAGGAAGGTGAAGAGA+AGG 0.463816 7_4:+20409068 None:intergenic
TTCCAGGAGTCAAGATTGCT+GGG 0.471601 7_4:-20406930 Msa1144420:CDS
TGAATATTAGGAGTTATCAA+TGG 0.472534 7_4:-20403996 Msa1144420:intron
ATGGGAATCAACGGCGCTAA+AGG 0.475110 7_4:-20405694 Msa1144420:CDS
GCCGGCGGACCTCTAGGATC+TGG 0.476163 7_4:-20404888 Msa1144420:CDS
ATCAAAGACCTGTGTCTCAC+TGG 0.480227 7_4:+20406208 None:intergenic
GTTGCACTAACCAAAACTTT+GGG 0.487621 7_4:+20406445 None:intergenic
TCCTACTCAAGCGAAGAAGC+TGG 0.489478 7_4:-20403734 Msa1144420:CDS
AATAGTTTACCTTTGTAGGA+TGG 0.497739 7_4:+20404513 None:intergenic
TCTGGTACTTATCGGCAATC+CGG 0.498322 7_4:+20406855 None:intergenic
TCAGATAAAGAAAGAAATCA+AGG 0.501501 7_4:-20406669 Msa1144420:intron
ACAGGAGTTGTGAATTTGGC+CGG 0.506650 7_4:-20406874 Msa1144420:CDS
CTCAAGGCTGTTCTTGGAGA+AGG 0.507833 7_4:-20403879 Msa1144420:CDS
ACAGCCTTGAGTGCAAAGTC+AGG 0.520440 7_4:+20403891 None:intergenic
GAAAGAAATCAAGGAGAGCA+GGG 0.521820 7_4:-20406660 Msa1144420:CDS
ATTCTTGTATGGTTTCTTCG+TGG 0.522476 7_4:+20409254 None:intergenic
GGTAAAGATGGTGGAGCACT+AGG 0.524807 7_4:-20405624 Msa1144420:intron
AGATTGCTGGGGAACCAGAA+TGG 0.527962 7_4:-20406918 Msa1144420:CDS
AAGGTGAAGAGAAGGAGAGA+CGG 0.529862 7_4:+20409076 None:intergenic
ATAAGTGGTGGATATGGAAA+TGG 0.535178 7_4:-20409300 None:intergenic
CTCTAGGATCTGGAAATCAA+TGG 0.536271 7_4:-20404878 Msa1144420:intron
ACAAAAGCGGTCAAACTCAA+TGG 0.543634 7_4:+20403443 None:intergenic
GGTACCTGACTTTGCACTCA+AGG 0.544437 7_4:-20403895 Msa1144420:CDS
AATGTCATCTAGATGAATCC+AGG 0.545445 7_4:+20404566 None:intergenic
CTTACAAAGAGGAGGGGTTG+AGG 0.546078 7_4:+20409053 None:intergenic
CCTACTCAAGCGAAGAAGCT+GGG 0.546377 7_4:-20403733 Msa1144420:CDS
TCCAGATCCTAGAGGTCCGC+CGG 0.548152 7_4:+20404887 None:intergenic
GGTGTTGTTCTTGGTAAAGA+TGG 0.549228 7_4:-20405636 Msa1144420:CDS
CACAATTCTGATAATCGCAC+AGG 0.550105 7_4:+20403960 None:intergenic
AAACTTGGCACAAGAATGAC+AGG 0.552676 7_4:+20403417 None:intergenic
AATAACCTCAGAAGACCATC+TGG 0.553327 7_4:+20406837 None:intergenic
TTGAGTGCAAAGTCAGGTAC+CGG 0.557165 7_4:+20403897 None:intergenic
TGGAAAGGATTATCTGGCTG+AGG 0.563447 7_4:-20406171 Msa1144420:intron
CCGGCAAACATCATGAAAAG+AGG 0.568087 7_4:+20404906 None:intergenic
GCCAGATAATCCTTTCCAGA+TGG 0.570687 7_4:+20406176 None:intergenic
ATTGAAACTTACAAAGAGGA+GGG 0.571016 7_4:+20409046 None:intergenic
TCAGGTACCGGCAGCCATGA+GGG 0.572098 7_4:+20403909 None:intergenic
GTAGAGCTACAGCTCTCACT+TGG 0.575595 7_4:-20409106 Msa1144420:CDS
TTGGTTAGTGCAACAGCCGT+TGG 0.579483 7_4:-20406436 Msa1144420:CDS
TTTACTAGACCAGAGAGGCT+AGG 0.580323 7_4:-20408849 Msa1144420:intron
AGCCACTCTAACATCTCCAT+TGG 0.581156 7_4:+20405671 None:intergenic
TTGGTGCAAAAGCTGCAAGC+AGG 0.582005 7_4:-20407810 Msa1144420:intron
TATGGAAATGGTGGTTGCTG+TGG 0.589794 7_4:-20409288 Msa1144420:five_prime_UTR
CAAAGAGGAGGGGTTGAGGA+AGG 0.589876 7_4:+20409057 None:intergenic
TGAACAAAGTCCATCTGGAA+AGG 0.591662 7_4:-20406186 Msa1144420:CDS
ACCAGGCACCAGTGAGACAC+AGG 0.597945 7_4:-20406216 Msa1144420:intron
AATTGAAACTTACAAAGAGG+AGG 0.598172 7_4:+20409045 None:intergenic
AGTGGTGGATATGGAAATGG+TGG 0.602083 7_4:-20409297 None:intergenic
TCAACGGCGCTAAAGGCCAA+TGG 0.604792 7_4:-20405687 Msa1144420:CDS
GTCAGGTACCGGCAGCCATG+AGG 0.605273 7_4:+20403908 None:intergenic
TCAGAATTGTGTGAACAGCT+GGG 0.607624 7_4:-20403948 Msa1144420:CDS
ATGCAGAGAATGGGAATCAA+CGG 0.609452 7_4:-20405703 Msa1144420:CDS
ACTAGACCAGAGAGGCTAGG+AGG 0.612928 7_4:-20408846 Msa1144420:intron
AATGCCACTGACATGTTGGA+AGG 0.613399 7_4:+20403593 None:intergenic
ATGTCAGTGGCATTCATCAA+CGG 0.614254 7_4:-20403584 Msa1144420:three_prime_UTR
GTTGTTCTTGGTAAAGATGG+TGG 0.616711 7_4:-20405633 Msa1144420:CDS
AGGAGGTTCAGAGTTTGGTG+TGG 0.622864 7_4:-20408829 Msa1144420:CDS
CCCAGCTTCTTCGCTTGAGT+AGG 0.629518 7_4:+20403733 None:intergenic
GATGAATGCCACTGACATGT+TGG 0.633783 7_4:+20403589 None:intergenic
CAACCCTTCCAACATGTCAG+TGG 0.637551 7_4:-20403597 Msa1144420:three_prime_UTR
CTATCAAATCCATCCTACAA+AGG 0.644854 7_4:-20404522 Msa1144420:intron
AGAGTGGCTCTAATTCGCAT+CGG 0.649797 7_4:-20405657 Msa1144420:CDS
TTGAAACTTACAAAGAGGAG+GGG 0.652849 7_4:+20409047 None:intergenic
GATTGCCGATAAGTACCAGA+TGG 0.655738 7_4:-20406852 Msa1144420:CDS
TGTTGCCGAGAATTAACAAG+AGG 0.658713 7_4:-20409196 Msa1144420:five_prime_UTR
GAATGACAGGTGGACAAAAG+CGG 0.660139 7_4:+20403430 None:intergenic
TGGCACTGATCAAAGCTCCA+AGG 0.660332 7_4:-20408809 Msa1144420:intron
GGCCAATGGAGATGTTAGAG+TGG 0.661233 7_4:-20405673 Msa1144420:CDS
AAGTACCAGATGGTCTTCTG+AGG 0.661589 7_4:-20406842 Msa1144420:intron
ATGTTGGAAGGGTTGATGCA+AGG 0.664486 7_4:+20403605 None:intergenic
CATTGATTTCCAGATCCTAG+AGG 0.666245 7_4:+20404879 None:intergenic
AGACATACCATAATAACCAA+CGG 0.668091 7_4:+20406420 None:intergenic
TCTTGGAGAAGGTGCTACTG+TGG 0.672114 7_4:-20403868 Msa1144420:intron
TCCAGGAGTCAAGATTGCTG+GGG 0.679418 7_4:-20406929 Msa1144420:CDS
ATGCCACTGACATGTTGGAA+GGG 0.683373 7_4:+20403594 None:intergenic
GTTGCCGAGAATTAACAAGA+GGG 0.697657 7_4:-20409195 Msa1144420:five_prime_UTR
CTTGGCACAAGAATGACAGG+TGG 0.700422 7_4:+20403420 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATATGTTATTGAAATAA+GGG + chr7_4:20407475-20407494 None:intergenic 10.0%
!! ATTTATATGTTATTGAAATA+AGG + chr7_4:20407476-20407495 None:intergenic 10.0%
!! AAAATCATGTTTAAATAGTA+TGG - chr7_4:20404118-20404137 Msa1144420:intron 15.0%
!!! GTTCCAATTAAATATTTTAT+TGG - chr7_4:20404224-20404243 Msa1144420:intron 15.0%
!! AAGCCAATAAAATATTTAAT+TGG + chr7_4:20404230-20404249 None:intergenic 15.0%
!! AGAATTCAAATGATATAAAT+AGG + chr7_4:20405003-20405022 None:intergenic 15.0%
!!! TTTTGATCTTTTGAAAAAAT+TGG + chr7_4:20405223-20405242 None:intergenic 15.0%
!!! ATTTTGCTTATATTTTGAAA+CGG + chr7_4:20405428-20405447 None:intergenic 15.0%
!!! ATTTTGCTTATATTTTGAAA+CGG - chr7_4:20405428-20405447 Msa1144420:intron 15.0%
!!! TAAATATTTTTGCAAAATGA+TGG - chr7_4:20406488-20406507 Msa1144420:intron 15.0%
!! AATGCTATTAAAATTAAGTA+AGG + chr7_4:20407401-20407420 None:intergenic 15.0%
!! AATGCTATTAAAATTAAGTA+AGG - chr7_4:20407401-20407420 Msa1144420:intron 15.0%
!!! AGTTTCAATTTTCATTTTCT+CGG - chr7_4:20403451-20403470 Msa1144420:three_prime_UTR 20.0%
!! AATGAAAATGAATTCAGAAA+TGG + chr7_4:20403615-20403634 None:intergenic 20.0%
!! AAATATTATAGAAGATACCT+TGG + chr7_4:20403694-20403713 None:intergenic 20.0%
!!! TGAGGTGAAATTTAATATTT+TGG - chr7_4:20403984-20404003 Msa1144420:CDS 20.0%
!!! TTTTATATTATGCAACGTTT+AGG - chr7_4:20404082-20404101 Msa1144420:intron 20.0%
!! TTTATATTATGCAACGTTTA+GGG - chr7_4:20404083-20404102 Msa1144420:intron 20.0%
!!! TGAGGCAAAATTTAATATTT+TGG + chr7_4:20404403-20404422 None:intergenic 20.0%
!!! TTATCTCTGGTTTTTATTAT+TGG - chr7_4:20404552-20404571 Msa1144420:CDS 20.0%
!! GTATAAATGTACTAAAAAAG+GGG + chr7_4:20404759-20404778 None:intergenic 20.0%
!! GGTATAAATGTACTAAAAAA+GGG + chr7_4:20404760-20404779 None:intergenic 20.0%
!! AGGTATAAATGTACTAAAAA+AGG + chr7_4:20404761-20404780 None:intergenic 20.0%
!! ATTTATCTGTTTATCATAGA+AGG - chr7_4:20404810-20404829 Msa1144420:intron 20.0%
!!! ATAAGCAAAATTCACTTTTT+AGG - chr7_4:20405330-20405349 Msa1144420:intron 20.0%
!!! ATAAGCAAAATTCACTTTTT+AGG + chr7_4:20405330-20405349 None:intergenic 20.0%
!!! CTTTTTCCTTAGAAATAATT+TGG - chr7_4:20405730-20405749 Msa1144420:intron 20.0%
!!! AAGAAACCAAATTATTTCTA+AGG + chr7_4:20405739-20405758 None:intergenic 20.0%
!! TTAAATAATATTCCCTCAAT+TGG + chr7_4:20405879-20405898 None:intergenic 20.0%
!! TATTACTCACAAATTTCATA+AGG - chr7_4:20406441-20406460 Msa1144420:CDS 20.0%
!!! TTATCAGAATTTTTTTAGCA+TGG + chr7_4:20406571-20406590 None:intergenic 20.0%
!! TGTCTTTCTCAAAATATAAA+GGG + chr7_4:20406594-20406613 None:intergenic 20.0%
!! ATGTCTTTCTCAAAATATAA+AGG + chr7_4:20406595-20406614 None:intergenic 20.0%
!!! TTTATATTTTGAGAAAGACA+TGG - chr7_4:20406594-20406613 Msa1144420:intron 20.0%
!! AGATAAAAAGCAATAAAATC+TGG - chr7_4:20407209-20407228 Msa1144420:intron 20.0%
!! TAAACAAATTTGAATTGAGT+AGG - chr7_4:20407338-20407357 Msa1144420:intron 20.0%
!! AAACAAATTTGAATTGAGTA+GGG - chr7_4:20407339-20407358 Msa1144420:intron 20.0%
!! AATTCAATTTACTAATGTCA+TGG - chr7_4:20407807-20407826 Msa1144420:intron 20.0%
!! ACAATGATATATTACCAATA+TGG - chr7_4:20408122-20408141 Msa1144420:intron 20.0%
!! ATATTCATAAACAAGATTCA+GGG + chr7_4:20408474-20408493 None:intergenic 20.0%
!! AATATTCATAAACAAGATTC+AGG + chr7_4:20408475-20408494 None:intergenic 20.0%
!!! GAATCTTGTTTATGAATATT+AGG - chr7_4:20408475-20408494 Msa1144420:intron 20.0%
!! TCAAGAAATAATTGCTTTAA+GGG + chr7_4:20408808-20408827 None:intergenic 20.0%
!! TTCAAGAAATAATTGCTTTA+AGG + chr7_4:20408809-20408828 None:intergenic 20.0%
!!! TATTCTTTATTCTTTGGAAT+TGG - chr7_4:20408853-20408872 Msa1144420:intron 20.0%
! TCATTGAGATTATTCTTGTA+TGG + chr7_4:20403243-20403262 None:intergenic 25.0%
! ATAGCAAAAGATTGATCTTA+TGG - chr7_4:20403348-20403367 Msa1144420:three_prime_UTR 25.0%
! GAAAATTGAAACTTACAAAG+AGG + chr7_4:20403444-20403463 None:intergenic 25.0%
! AAAAACACAATGATTGATCA+TGG - chr7_4:20403929-20403948 Msa1144420:CDS 25.0%
! TAATTAGCCAAAGTTTAAAG+AGG + chr7_4:20404059-20404078 None:intergenic 25.0%
! TTATATTATGCAACGTTTAG+GGG - chr7_4:20404084-20404103 Msa1144420:intron 25.0%
! ACTCATATTCAGTGATAAAT+GGG + chr7_4:20404191-20404210 None:intergenic 25.0%
! TTGGCTAATAATCTATTGTA+AGG + chr7_4:20404320-20404339 None:intergenic 25.0%
! ATTATTAGCCAAGTATAAAG+AGG - chr7_4:20404328-20404347 Msa1144420:intron 25.0%
! AAATGTTCAAAGTTTATCTC+TGG - chr7_4:20404539-20404558 Msa1144420:CDS 25.0%
!!! AGGTTTTATAGGTAAAAGAT+TGG - chr7_4:20404654-20404673 Msa1144420:intron 25.0%
!!! ATGATATATATGAGAGCATT+GGG + chr7_4:20404792-20404811 None:intergenic 25.0%
!! AATGATATATATGAGAGCAT+TGG + chr7_4:20404793-20404812 None:intergenic 25.0%
! ATATAACGTTATAGATTTCG+AGG - chr7_4:20404887-20404906 Msa1144420:CDS 25.0%
!! TAAAGCAGAACTAATTTTTC+CGG - chr7_4:20405118-20405137 Msa1144420:intron 25.0%
! TAATATATTACCTTCTTACC+CGG + chr7_4:20405140-20405159 None:intergenic 25.0%
! GATAAAGGTAAGTTAGATTT+AGG + chr7_4:20405251-20405270 None:intergenic 25.0%
! ATATGGTGCTTATAAGATAA+AGG + chr7_4:20405266-20405285 None:intergenic 25.0%
! CATTCATTTAATGATGTATG+TGG - chr7_4:20405355-20405374 Msa1144420:intron 25.0%
! CATTCATTTAATGATGTATG+TGG + chr7_4:20405355-20405374 None:intergenic 25.0%
! TTAACTATTAGTATGCTTTG+AGG + chr7_4:20405471-20405490 None:intergenic 25.0%
! TTAACCAGTTAATTCTTACT+TGG - chr7_4:20405512-20405531 Msa1144420:intron 25.0%
! AATACCAAGTAAGAATTAAC+TGG + chr7_4:20405519-20405538 None:intergenic 25.0%
! TCAGATAAAGAAAGAAATCA+AGG - chr7_4:20405814-20405833 Msa1144420:intron 25.0%
! ATTTATTCATTTCATTGCGA+AGG - chr7_4:20405977-20405996 Msa1144420:intron 25.0%
! GGTTGTAGATTTGATAAAAA+AGG - chr7_4:20405998-20406017 Msa1144420:intron 25.0%
! GTTAATTAAAATGATCACAC+AGG - chr7_4:20406129-20406148 Msa1144420:intron 25.0%
!! GTTAGAAAATGCATTACTTT+TGG - chr7_4:20406170-20406189 Msa1144420:intron 25.0%
! TTCTAACCACTTATCTATTT+AGG - chr7_4:20406889-20406908 Msa1144420:CDS 25.0%
! ATAATGCCTAAATAGATAAG+TGG + chr7_4:20406898-20406917 None:intergenic 25.0%
! ACTTATCTATTTAGGCATTA+TGG - chr7_4:20406897-20406916 Msa1144420:CDS 25.0%
! CTTATCTATTTAGGCATTAT+GGG - chr7_4:20406898-20406917 Msa1144420:CDS 25.0%
! TTATCTATTTAGGCATTATG+GGG - chr7_4:20406899-20406918 Msa1144420:CDS 25.0%
! AAGTAAGGACTAAATTTACA+AGG + chr7_4:20406974-20406993 None:intergenic 25.0%
!!! AATCAAACTTTGTTTTAGCA+GGG + chr7_4:20407049-20407068 None:intergenic 25.0%
!!! TAATCAAACTTTGTTTTAGC+AGG + chr7_4:20407050-20407069 None:intergenic 25.0%
!! AATTTTGCGATAAGTTTTTG+CGG - chr7_4:20407244-20407263 Msa1144420:intron 25.0%
! AGTGCAGAAAAACAAAATTA+GGG - chr7_4:20407372-20407391 Msa1144420:intron 25.0%
!!! TGTCTAAGTAATGGATTAAA+AGG + chr7_4:20407677-20407696 None:intergenic 25.0%
!!! TCTTTTTTGTTTTTCCATAC+AGG - chr7_4:20407890-20407909 Msa1144420:intron 25.0%
!!! AAATCCAGTTTTTGAGATAT+GGG + chr7_4:20408000-20408019 None:intergenic 25.0%
! TGAATATTAGGAGTTATCAA+TGG - chr7_4:20408487-20408506 Msa1144420:intron 25.0%
! TTCATATTAGAAGATCGATA+TGG + chr7_4:20408674-20408693 None:intergenic 25.0%
! TCTTTCTTCAAATTGACAAT+AGG - chr7_4:20408952-20408971 Msa1144420:intron 25.0%
! GCAATACTGATATAAAAACT+TGG + chr7_4:20409084-20409103 None:intergenic 25.0%
ATTGAAACTTACAAAGAGGA+GGG + chr7_4:20403440-20403459 None:intergenic 30.0%
AATTGAAACTTACAAAGAGG+AGG + chr7_4:20403441-20403460 None:intergenic 30.0%
!! TGAATTCAGAAATGGATTGT+AGG + chr7_4:20403607-20403626 None:intergenic 30.0%
TGGCATGAAGTAAAAACAAA+CGG + chr7_4:20403725-20403744 None:intergenic 30.0%
!!! TTTGTTTTTACTTCATGCCA+AGG - chr7_4:20403725-20403744 Msa1144420:CDS 30.0%
AAACTAAACACTAAACACCT+TGG + chr7_4:20403745-20403764 None:intergenic 30.0%
! CTAACACATAGTTTAAGGTT+AGG - chr7_4:20403834-20403853 Msa1144420:intron 30.0%
GATTGTTAGCATAGAAAATC+CGG - chr7_4:20403881-20403900 Msa1144420:CDS 30.0%
!! ATATCTTCTTACTTTAGAGC+CGG + chr7_4:20403903-20403922 None:intergenic 30.0%
! TTTGGATCTAAAGTTGAACA+AGG - chr7_4:20404002-20404021 Msa1144420:intron 30.0%
GACTCATATTCAGTGATAAA+TGG + chr7_4:20404192-20404211 None:intergenic 30.0%
!!! TTTTATTGGCTTCAGTTTCA+TGG - chr7_4:20404238-20404257 Msa1144420:intron 30.0%
AGTTCATTCCTCTTTATACT+TGG + chr7_4:20404339-20404358 None:intergenic 30.0%
GTTTGATAGAAATCATGTCA+AGG + chr7_4:20404478-20404497 None:intergenic 30.0%
CAAATGATCATATCTGTAAC+TGG - chr7_4:20404625-20404644 Msa1144420:intron 30.0%
ATTATGAAGCAAATGCAGAA+AGG + chr7_4:20404731-20404750 None:intergenic 30.0%
! TTTATCATAGAAGGTGCATT+GGG - chr7_4:20404819-20404838 Msa1144420:intron 30.0%
CACATGATGCAAATATTTAC+CGG + chr7_4:20404923-20404942 None:intergenic 30.0%
GCAGAGTAGTGATATAATTA+AGG + chr7_4:20404955-20404974 None:intergenic 30.0%
TAATTATATCACTACTCTGC+AGG - chr7_4:20404955-20404974 Msa1144420:intron 30.0%
! AAAGCAGAACTAATTTTTCC+GGG - chr7_4:20405119-20405138 Msa1144420:intron 30.0%
ATGAAAACCAACAACAGATA+TGG + chr7_4:20405283-20405302 None:intergenic 30.0%
!!! TGCTTATATTTTGAAACGGA+GGG + chr7_4:20405432-20405451 None:intergenic 30.0%
!!! TTGCTTATATTTTGAAACGG+AGG + chr7_4:20405431-20405450 None:intergenic 30.0%
GATGTATGTGGTTCATAATA+TGG + chr7_4:20405382-20405401 None:intergenic 30.0%
!!! TTGCTTATATTTTGAAACGG+AGG - chr7_4:20405431-20405450 Msa1144420:intron 30.0%
!!! TGCTTATATTTTGAAACGGA+GGG - chr7_4:20405432-20405451 Msa1144420:intron 30.0%
TGAATACAATCTTTCCATTC+TGG + chr7_4:20405582-20405601 None:intergenic 30.0%
AGAATGGAAAGATTGTATTC+AGG - chr7_4:20405581-20405600 Msa1144420:intron 30.0%
GAATGGAAAGATTGTATTCA+GGG - chr7_4:20405582-20405601 Msa1144420:intron 30.0%
TAGTGAGAGTAATAGAAACA+CGG + chr7_4:20405673-20405692 None:intergenic 30.0%
ATATACTTACACCTAGTTAG+AGG - chr7_4:20405703-20405722 Msa1144420:CDS 30.0%
GAAAAAGATAACCTCTAACT+AGG + chr7_4:20405717-20405736 None:intergenic 30.0%
! GGTTTCTTTGTTTGCTAATT+TGG - chr7_4:20405751-20405770 Msa1144420:intron 30.0%
! TCTTTTGCCTTATCTCTTAA+TGG - chr7_4:20405777-20405796 Msa1144420:intron 30.0%
TAAGTATGCATTCCAATTGA+GGG - chr7_4:20405864-20405883 Msa1144420:intron 30.0%
AGACATACCATAATAACCAA+CGG + chr7_4:20406066-20406085 None:intergenic 30.0%
! AACCAATAGAGAACCATTTT+TGG + chr7_4:20406094-20406113 None:intergenic 30.0%
CAGGTGTTAATTAAATGCTT+TGG - chr7_4:20406148-20406167 Msa1144420:intron 30.0%
CTTTCTACTTAATTATGACC+AGG - chr7_4:20406250-20406269 Msa1144420:intron 30.0%
ATTGTTCAGCAAAGAAAACT+TGG + chr7_4:20406411-20406430 None:intergenic 30.0%
AATATGTTTAATCAGAACCG+TGG + chr7_4:20406665-20406684 None:intergenic 30.0%
TAGCGAAATGTTAGATTGAT+TGG + chr7_4:20406706-20406725 None:intergenic 30.0%
AATAGATAAGTGGTTAGAAC+TGG + chr7_4:20406888-20406907 None:intergenic 30.0%
!! TTATGGGGTGTTATTATTTC+AGG - chr7_4:20406914-20406933 Msa1144420:CDS 30.0%
!! TATGGGGTGTTATTATTTCA+GGG - chr7_4:20406915-20406934 Msa1144420:CDS 30.0%
!! TACAAGGTCGCTATTTTATA+GGG + chr7_4:20406958-20406977 None:intergenic 30.0%
!! TTACAAGGTCGCTATTTTAT+AGG + chr7_4:20406959-20406978 None:intergenic 30.0%
CAAGATTAGAACACTATGAA+AGG - chr7_4:20407112-20407131 Msa1144420:intron 30.0%
CAGTGCAGAAAAACAAAATT+AGG - chr7_4:20407371-20407390 Msa1144420:intron 30.0%
! TGTAGTGGAAAATTGTTTGA+TGG + chr7_4:20407704-20407723 None:intergenic 30.0%
AATAGTTTACCTTTGTAGGA+TGG + chr7_4:20407973-20407992 None:intergenic 30.0%
AGTGAATAGTTTACCTTTGT+AGG + chr7_4:20407977-20407996 None:intergenic 30.0%
!!! CAAATCCAGTTTTTGAGATA+TGG + chr7_4:20408001-20408020 None:intergenic 30.0%
CATTGTGATTCATTAGTGTA+AGG + chr7_4:20408108-20408127 None:intergenic 30.0%
ATGAATGGTTTGAAGACTTA+CGG - chr7_4:20408152-20408171 Msa1144420:intron 30.0%
!!! ATCTCTTTGTAGGTTTTAGA+AGG - chr7_4:20408714-20408733 Msa1144420:intron 30.0%
CTGTCGTATTCTTTATTCTT+TGG - chr7_4:20408847-20408866 Msa1144420:intron 30.0%
!! ATGCACTAAACTTAATTTGC+AGG + chr7_4:20409199-20409218 None:intergenic 30.0%
CAGTTTGAAGAAATACTTTG+AGG + chr7_4:20409257-20409276 None:intergenic 30.0%
TGGTTTCTTCGTGGTTAATT+TGG + chr7_4:20403223-20403242 None:intergenic 35.0%
ATTCTTGTATGGTTTCTTCG+TGG + chr7_4:20403232-20403251 None:intergenic 35.0%
AGATCCCTCTTGTTAATTCT+CGG + chr7_4:20403295-20403314 None:intergenic 35.0%
TTGAAACTTACAAAGAGGAG+GGG + chr7_4:20403439-20403458 None:intergenic 35.0%
! TTCATTTTACTAGACCAGAG+AGG - chr7_4:20403629-20403648 Msa1144420:three_prime_UTR 35.0%
GGCATGAAGTAAAAACAAAC+GGG + chr7_4:20403724-20403743 None:intergenic 35.0%
ACTCAGAATGATTATCTCCA+AGG + chr7_4:20403785-20403804 None:intergenic 35.0%
TTGGAGATAATCATTCTGAG+TGG - chr7_4:20403784-20403803 Msa1144420:intron 35.0%
TGGAGATAATCATTCTGAGT+GGG - chr7_4:20403785-20403804 Msa1144420:intron 35.0%
GTGTGCTAACACATAGTTTA+AGG - chr7_4:20403829-20403848 Msa1144420:intron 35.0%
TTAAATTTCACCTCAGTGTC+TGG + chr7_4:20403979-20403998 None:intergenic 35.0%
GCTCATTCCTCTTTAAACTT+TGG - chr7_4:20404049-20404068 Msa1144420:intron 35.0%
! GTTTATCATAGAAGGTGCAT+TGG - chr7_4:20404818-20404837 Msa1144420:intron 35.0%
AACATAAGAGAACTATGACC+AGG + chr7_4:20404860-20404879 None:intergenic 35.0%
!! ATTTCGAGGCTTTAAAAGAC+CGG - chr7_4:20404901-20404920 Msa1144420:CDS 35.0%
CGGTAAATATTTGCATCATG+TGG - chr7_4:20404921-20404940 Msa1144420:intron 35.0%
! ACTAATTTTTCCGGGTAAGA+AGG - chr7_4:20405127-20405146 Msa1144420:intron 35.0%
! ACATGCTTTTGCAAAATGTG+AGG + chr7_4:20405183-20405202 None:intergenic 35.0%
ATAAGCACCATATCTGTTGT+TGG - chr7_4:20405273-20405292 Msa1144420:intron 35.0%
TTCAACAGGAGTTGTGAATT+TGG - chr7_4:20405605-20405624 Msa1144420:intron 35.0%
GCAAACACCATTAAGAGATA+AGG + chr7_4:20405787-20405806 None:intergenic 35.0%
!! GGAATGCATACTTACTTTTG+AGG + chr7_4:20405858-20405877 None:intergenic 35.0%
GTAAGTATGCATTCCAATTG+AGG - chr7_4:20405863-20405882 Msa1144420:intron 35.0%
GAATAAATCAGCAGCAGAAT+AGG + chr7_4:20405965-20405984 None:intergenic 35.0%
! TGAAATTCGACCCAAAGTTT+TGG - chr7_4:20406028-20406047 Msa1144420:intron 35.0%
GTTGCACTAACCAAAACTTT+GGG + chr7_4:20406041-20406060 None:intergenic 35.0%
TGTTGCACTAACCAAAACTT+TGG + chr7_4:20406042-20406061 None:intergenic 35.0%
GTATGTCTGTATGCCAAAAA+TGG - chr7_4:20406078-20406097 Msa1144420:intron 35.0%
TGCCAAAAATGGTTCTCTAT+TGG - chr7_4:20406089-20406108 Msa1144420:intron 35.0%
TTTGATGAACAAAGTCCATC+TGG - chr7_4:20406292-20406311 Msa1144420:intron 35.0%
!!! TTTTCAGGTATGCAGAGAAT+GGG - chr7_4:20406771-20406790 Msa1144420:intron 35.0%
AAGTAAGGACTAAACTCACA+AGG - chr7_4:20407416-20407435 Msa1144420:intron 35.0%
!! TCACAAGGTCGCTATTTTAT+AGG - chr7_4:20407431-20407450 Msa1144420:intron 35.0%
!! CACAAGGTCGCTATTTTATA+GGG - chr7_4:20407432-20407451 Msa1144420:intron 35.0%
CAGTTTCTTACACTCGTAAT+TGG - chr7_4:20407637-20407656 Msa1144420:intron 35.0%
GTGGAAAATTGTTTGATGGA+TGG + chr7_4:20407700-20407719 None:intergenic 35.0%
! TTTTCCACTACAATACACCT+TGG - chr7_4:20407712-20407731 Msa1144420:intron 35.0%
!! GCAATTTTGAAAACACACCA+AGG + chr7_4:20407732-20407751 None:intergenic 35.0%
AATGTCATCTAGATGAATCC+AGG + chr7_4:20407920-20407939 None:intergenic 35.0%
CTATCAAATCCATCCTACAA+AGG - chr7_4:20407961-20407980 Msa1144420:intron 35.0%
GATTCATTAGTGTAAGGCAT+GGG + chr7_4:20408102-20408121 None:intergenic 35.0%
TGATTCATTAGTGTAAGGCA+TGG + chr7_4:20408103-20408122 None:intergenic 35.0%
CATTCATTTGTGCTCCATAT+TGG + chr7_4:20408139-20408158 None:intergenic 35.0%
CAATATGGAGCACAAATGAA+TGG - chr7_4:20408137-20408156 Msa1144420:intron 35.0%
!! GCTATTTTCAAAAGCTATCC+AGG - chr7_4:20408287-20408306 Msa1144420:intron 35.0%
!! AATCACTTGTGAGAGCATTT+GGG + chr7_4:20408377-20408396 None:intergenic 35.0%
!! TAATCACTTGTGAGAGCATT+TGG + chr7_4:20408378-20408397 None:intergenic 35.0%
! ATCGATATGGATTGATGACA+TGG + chr7_4:20408661-20408680 None:intergenic 35.0%
GAGATTAACAGTGCATTTGA+TGG + chr7_4:20408699-20408718 None:intergenic 35.0%
TGCACTGTTAATCTCTTTGT+AGG - chr7_4:20408704-20408723 Msa1144420:intron 35.0%
TGTTGCCGAGAATTAACAAG+AGG - chr7_4:20403287-20403306 Msa1144420:three_prime_UTR 40.0%
GTTGCCGAGAATTAACAAGA+GGG - chr7_4:20403288-20403307 Msa1144420:three_prime_UTR 40.0%
ACTCATTATCTTTGCCTCCT+TGG - chr7_4:20403765-20403784 Msa1144420:intron 40.0%
CAGAATGATTATCTCCAAGG+AGG + chr7_4:20403782-20403801 None:intergenic 40.0%
GTAGCTAACTAATCCAGCTA+CGG + chr7_4:20404272-20404291 None:intergenic 40.0%
! AAATTTTGCCTCAGCATGTC+TGG - chr7_4:20404410-20404429 Msa1144420:intron 40.0%
ATATCTGTAACTGGAGCAAC+AGG - chr7_4:20404634-20404653 Msa1144420:intron 40.0%
!! ACTGGAGCAACAGGTTTTAT+AGG - chr7_4:20404643-20404662 Msa1144420:intron 40.0%
!! GAGAGCATTGGGAAAATGTT+AGG + chr7_4:20404781-20404800 None:intergenic 40.0%
! CTTTAGATTTAGAGCGTGTC+AGG + chr7_4:20405103-20405122 None:intergenic 40.0%
TTTCCAGTGAAAGACTTTCC+AGG - chr7_4:20405537-20405556 Msa1144420:intron 40.0%
GATTGTATTCAGGGTTCAAC+AGG - chr7_4:20405591-20405610 Msa1144420:intron 40.0%
GAAGACCATCTGGTACTTAT+CGG + chr7_4:20405639-20405658 None:intergenic 40.0%
AATAACCTCAGAAGACCATC+TGG + chr7_4:20405649-20405668 None:intergenic 40.0%
AGAAAGAAATCAAGGAGAGC+AGG - chr7_4:20405822-20405841 Msa1144420:intron 40.0%
GAAAGAAATCAAGGAGAGCA+GGG - chr7_4:20405823-20405842 Msa1144420:intron 40.0%
ACTTTGGGTCGAATTTCATC+TGG + chr7_4:20406026-20406045 None:intergenic 40.0%
TGAACAAAGTCCATCTGGAA+AGG - chr7_4:20406297-20406316 Msa1144420:intron 40.0%
TCCATCTGGAAAGGATTATC+TGG - chr7_4:20406306-20406325 Msa1144420:intron 40.0%
GTGTTGAACCTCTTAACAGA+TGG - chr7_4:20406510-20406529 Msa1144420:intron 40.0%
ACATAATCCTTCAGAGTCCA+CGG - chr7_4:20406645-20406664 Msa1144420:CDS 40.0%
CTCTGCATACCTGAAAAGAT+GGG + chr7_4:20406768-20406787 None:intergenic 40.0%
TCTCTGCATACCTGAAAAGA+TGG + chr7_4:20406769-20406788 None:intergenic 40.0%
!!! CTTTTCAGGTATGCAGAGAA+TGG - chr7_4:20406770-20406789 Msa1144420:intron 40.0%
ATGCAGAGAATGGGAATCAA+CGG - chr7_4:20406780-20406799 Msa1144420:intron 40.0%
!! GGTGTTGTTCTTGGTAAAGA+TGG - chr7_4:20406847-20406866 Msa1144420:CDS 40.0%
GTTGTTCTTGGTAAAGATGG+TGG - chr7_4:20406850-20406869 Msa1144420:CDS 40.0%
! TTTGCGATAAGTTTTTGCGG+AGG - chr7_4:20407247-20407266 Msa1144420:intron 40.0%
!!! AGGTATCATTTTAGCTGCAG+TGG + chr7_4:20407560-20407579 None:intergenic 40.0%
! CCTCTTTTCATGATGTTTGC+CGG - chr7_4:20407577-20407596 Msa1144420:intron 40.0%
!! CATTGATTTCCAGATCCTAG+AGG + chr7_4:20407607-20407626 None:intergenic 40.0%
!! CTCTAGGATCTGGAAATCAA+TGG - chr7_4:20407605-20407624 Msa1144420:intron 40.0%
GATGGATGGTGTCTAAGTAA+TGG + chr7_4:20407686-20407705 None:intergenic 40.0%
AGCTATGCTGATAAGATCTG+CGG - chr7_4:20407769-20407788 Msa1144420:intron 40.0%
CCTCCAAATTAAGACGCAAA+CGG + chr7_4:20407855-20407874 None:intergenic 40.0%
ATTTGGAGGTAGTCACATTC+TGG - chr7_4:20407866-20407885 Msa1144420:CDS 40.0%
! TTTTTCCATACAGGTTCTCC+TGG - chr7_4:20407899-20407918 Msa1144420:intron 40.0%
CACTCCCATATCTCAAAAAC+TGG - chr7_4:20407993-20408012 Msa1144420:intron 40.0%
AGATTAGACGACAGGCAAAA+TGG + chr7_4:20408077-20408096 None:intergenic 40.0%
CTTATTGTCATAAGCTCTCC+TGG + chr7_4:20408308-20408327 None:intergenic 40.0%
TCTGATAATCGCACAGGATT+TGG + chr7_4:20408520-20408539 None:intergenic 40.0%
CACAATTCTGATAATCGCAC+AGG + chr7_4:20408526-20408545 None:intergenic 40.0%
ATCAGAATTGTGTGAACAGC+TGG - chr7_4:20408534-20408553 Msa1144420:intron 40.0%
TCAGAATTGTGTGAACAGCT+GGG - chr7_4:20408535-20408554 Msa1144420:intron 40.0%
! TGAACAGCTGGGAAATGTTT+TGG - chr7_4:20408546-20408565 Msa1144420:intron 40.0%
! GAACAGCTGGGAAATGTTTT+GGG - chr7_4:20408547-20408566 Msa1144420:intron 40.0%
CTGTGGTAAGGAATCATTTC+TGG - chr7_4:20408632-20408651 Msa1144420:intron 40.0%
!!! GGTTTTAGAAGGACAAAGAG+TGG - chr7_4:20408725-20408744 Msa1144420:intron 40.0%
ATGTCAGTGGCATTCATCAA+CGG - chr7_4:20408899-20408918 Msa1144420:intron 40.0%
ACAAAAGCGGTCAAACTCAA+TGG + chr7_4:20409043-20409062 None:intergenic 40.0%
AAACTTGGCACAAGAATGAC+AGG + chr7_4:20409069-20409088 None:intergenic 40.0%
AAGGTGAAGAGAAGGAGAGA+CGG + chr7_4:20403410-20403429 None:intergenic 45.0%
TTGCACCACATTGCTCACTT+AGG - chr7_4:20403481-20403500 Msa1144420:three_prime_UTR 45.0%
CTTGTCCTAAGTGAGCAATG+TGG + chr7_4:20403489-20403508 None:intergenic 45.0%
CACATTGCTCACTTAGGACA+AGG - chr7_4:20403487-20403506 Msa1144420:three_prime_UTR 45.0%
TTTACTAGACCAGAGAGGCT+AGG - chr7_4:20403634-20403653 Msa1144420:three_prime_UTR 45.0%
GGTACGTGTGCGTAATTGAT+CGG + chr7_4:20403958-20403977 None:intergenic 45.0%
CTAACTAATCCAGCTACGGA+TGG + chr7_4:20404268-20404287 None:intergenic 45.0%
ATGTCAAGGTTCAACGTGTC+TGG + chr7_4:20404464-20404483 None:intergenic 45.0%
!! ATCACCGAGTGTGTTTTTGC+AGG - chr7_4:20404597-20404616 Msa1144420:intron 45.0%
!! TCACCGAGTGTGTTTTTGCA+GGG - chr7_4:20404598-20404617 Msa1144420:intron 45.0%
TCTCCCTGCAAAAACACACT+CGG + chr7_4:20404604-20404623 None:intergenic 45.0%
! CTAGTAAGTACTGCCAGAGA+CGG + chr7_4:20404707-20404726 None:intergenic 45.0%
GGGATTGTATTGTACTCTCC+TGG - chr7_4:20404839-20404858 Msa1144420:intron 45.0%
ACTCCTGGAAAGTCTTTCAC+TGG + chr7_4:20405543-20405562 None:intergenic 45.0%
TTTCCAGGAGTCAAGATTGC+TGG - chr7_4:20405552-20405571 Msa1144420:intron 45.0%
TTCCAGGAGTCAAGATTGCT+GGG - chr7_4:20405553-20405572 Msa1144420:intron 45.0%
ACAGGAGTTGTGAATTTGGC+CGG - chr7_4:20405609-20405628 Msa1144420:intron 45.0%
TCTGGTACTTATCGGCAATC+CGG + chr7_4:20405631-20405650 None:intergenic 45.0%
GATTGCCGATAAGTACCAGA+TGG - chr7_4:20405631-20405650 Msa1144420:CDS 45.0%
AAGTACCAGATGGTCTTCTG+AGG - chr7_4:20405641-20405660 Msa1144420:CDS 45.0%
! GCAACAGCCGTTGGTTATTA+TGG - chr7_4:20406056-20406075 Msa1144420:intron 45.0%
ATCAAAGACCTGTGTCTCAC+TGG + chr7_4:20406278-20406297 None:intergenic 45.0%
GCCAGATAATCCTTTCCAGA+TGG + chr7_4:20406310-20406329 None:intergenic 45.0%
TGGAAAGGATTATCTGGCTG+AGG - chr7_4:20406312-20406331 Msa1144420:intron 45.0%
GGATTATCTGGCTGAGGTAA+AGG - chr7_4:20406318-20406337 Msa1144420:intron 45.0%
CTGTGACTCCATCTGTTAAG+AGG + chr7_4:20406521-20406540 None:intergenic 45.0%
AGATGGAGTCACAGACAATG+TGG - chr7_4:20406527-20406546 Msa1144420:intron 45.0%
! CTGAATCTGCCCATCTTTTC+AGG - chr7_4:20406756-20406775 Msa1144420:intron 45.0%
AGCCACTCTAACATCTCCAT+TGG + chr7_4:20406815-20406834 None:intergenic 45.0%
!! AGAGTGGCTCTAATTCGCAT+CGG - chr7_4:20406826-20406845 Msa1144420:intron 45.0%
!! ATTCGCATCGGTGTTGTTCT+TGG - chr7_4:20406838-20406857 Msa1144420:intron 45.0%
CCGGCAAACATCATGAAAAG+AGG + chr7_4:20407580-20407599 None:intergenic 45.0%
! CTTTTCATGATGTTTGCCGG+CGG - chr7_4:20407580-20407599 Msa1144420:intron 45.0%
CACACCAAGGTGTATTGTAG+TGG + chr7_4:20407719-20407738 None:intergenic 45.0%
! CCGTTTGCGTCTTAATTTGG+AGG - chr7_4:20407852-20407871 Msa1144420:CDS 45.0%
TGAATCCAGGAGAACCTGTA+TGG + chr7_4:20407907-20407926 None:intergenic 45.0%
TTGAGTGCAAAGTCAGGTAC+CGG + chr7_4:20408589-20408608 None:intergenic 45.0%
TTTGCACTCAAGGCTGTTCT+TGG - chr7_4:20408598-20408617 Msa1144420:intron 45.0%
!! ATGTTGGAAGGGTTGATGCA+AGG + chr7_4:20408881-20408900 None:intergenic 45.0%
ATGCCACTGACATGTTGGAA+GGG + chr7_4:20408892-20408911 None:intergenic 45.0%
AATGCCACTGACATGTTGGA+AGG + chr7_4:20408893-20408912 None:intergenic 45.0%
GATGAATGCCACTGACATGT+TGG + chr7_4:20408897-20408916 None:intergenic 45.0%
GAATGACAGGTGGACAAAAG+CGG + chr7_4:20409056-20409075 None:intergenic 45.0%
!!! TATAAGTAAATTTTTTTATA+GGG + chr7_4:20407018-20407037 None:intergenic 5.0%
!!! TTATAAGTAAATTTTTTTAT+AGG + chr7_4:20407019-20407038 None:intergenic 5.0%
GTAGAGCTACAGCTCTCACT+TGG - chr7_4:20403377-20403396 Msa1144420:three_prime_UTR 50.0%
GGTTGAGGAAGGTGAAGAGA+AGG + chr7_4:20403418-20403437 None:intergenic 50.0%
CTTACAAAGAGGAGGGGTTG+AGG + chr7_4:20403433-20403452 None:intergenic 50.0%
AGGCTAGGAGGTTCAGAGTT+TGG - chr7_4:20403649-20403668 Msa1144420:three_prime_UTR 50.0%
! AGGAGGTTCAGAGTTTGGTG+TGG - chr7_4:20403654-20403673 Msa1144420:three_prime_UTR 50.0%
!! TGGCACTGATCAAAGCTCCA+AGG - chr7_4:20403674-20403693 Msa1144420:exon 50.0%
TCATGATGCCAGACATGCTG+AGG + chr7_4:20404421-20404440 None:intergenic 50.0%
TTGGTGCAAAAGCTGCAAGC+AGG - chr7_4:20404673-20404692 Msa1144420:intron 50.0%
! TAAGTACTGCCAGAGACGGA+GGG + chr7_4:20404703-20404722 None:intergenic 50.0%
CGTCTCTGGCAGTACTTACT+AGG - chr7_4:20404705-20404724 Msa1144420:intron 50.0%
TCCAGGAGTCAAGATTGCTG+GGG - chr7_4:20405554-20405573 Msa1144420:intron 50.0%
AGATTGCTGGGGAACCAGAA+TGG - chr7_4:20405565-20405584 Msa1144420:intron 50.0%
TTGGTTAGTGCAACAGCCGT+TGG - chr7_4:20406047-20406066 Msa1144420:intron 50.0%
ATCAGAACCGTGGACTCTGA+AGG + chr7_4:20406655-20406674 None:intergenic 50.0%
ATGGGAATCAACGGCGCTAA+AGG - chr7_4:20406789-20406808 Msa1144420:intron 50.0%
GGCCAATGGAGATGTTAGAG+TGG - chr7_4:20406810-20406829 Msa1144420:intron 50.0%
!! GGTAAAGATGGTGGAGCACT+AGG - chr7_4:20406859-20406878 Msa1144420:CDS 50.0%
GCGCCGTTTGCGTCTTAATT+TGG - chr7_4:20407849-20407868 Msa1144420:CDS 50.0%
!! CATGGGCTAGATTAGACGAC+AGG + chr7_4:20408085-20408104 None:intergenic 50.0%
TGAAGACTTACGGCCATGTG+CGG - chr7_4:20408162-20408181 Msa1144420:intron 50.0%
!! ATGTTTTGGGTCGTCCCTCA+TGG - chr7_4:20408560-20408579 Msa1144420:intron 50.0%
GGTACCTGACTTTGCACTCA+AGG - chr7_4:20408588-20408607 Msa1144420:intron 50.0%
ACAGCCTTGAGTGCAAAGTC+AGG + chr7_4:20408595-20408614 None:intergenic 50.0%
CTCAAGGCTGTTCTTGGAGA+AGG - chr7_4:20408604-20408623 Msa1144420:intron 50.0%
!! TCTTGGAGAAGGTGCTACTG+TGG - chr7_4:20408615-20408634 Msa1144420:intron 50.0%
!! GAGAAGGTGCTACTGTGGTA+AGG - chr7_4:20408620-20408639 Msa1144420:intron 50.0%
TCCTACTCAAGCGAAGAAGC+TGG - chr7_4:20408749-20408768 Msa1144420:intron 50.0%
CCTACTCAAGCGAAGAAGCT+GGG - chr7_4:20408750-20408769 Msa1144420:intron 50.0%
CAACCCTTCCAACATGTCAG+TGG - chr7_4:20408886-20408905 Msa1144420:intron 50.0%
CTTGGCACAAGAATGACAGG+TGG + chr7_4:20409066-20409085 None:intergenic 50.0%
CAAAGAGGAGGGGTTGAGGA+AGG + chr7_4:20403429-20403448 None:intergenic 55.0%
ACTAGACCAGAGAGGCTAGG+AGG - chr7_4:20403637-20403656 Msa1144420:three_prime_UTR 55.0%
TCTGAACCTCCTAGCCTCTC+TGG + chr7_4:20403646-20403665 None:intergenic 55.0%
! GAGCAGAGCTGAAAGCGCAA+CGG + chr7_4:20404145-20404164 None:intergenic 55.0%
! GTAAGTACTGCCAGAGACGG+AGG + chr7_4:20404704-20404723 None:intergenic 55.0%
TCCCCAGCAATCTTGACTCC+TGG + chr7_4:20405558-20405577 None:intergenic 55.0%
TCAACGGCGCTAAAGGCCAA+TGG - chr7_4:20406796-20406815 Msa1144420:intron 55.0%
CCCAGCTTCTTCGCTTGAGT+AGG + chr7_4:20408753-20408772 None:intergenic 55.0%
CGCACACGTACCAGACACTG+AGG - chr7_4:20403966-20403985 Msa1144420:CDS 60.0%
! CATGGAGTGCCATCCGTAGC+TGG - chr7_4:20404256-20404275 Msa1144420:intron 60.0%
ACCAGGCACCAGTGAGACAC+AGG - chr7_4:20406267-20406286 Msa1144420:intron 60.0%
ACCTGTGTCTCACTGGTGCC+TGG + chr7_4:20406271-20406290 None:intergenic 60.0%
ATGTTTGCCGGCGGACCTCT+AGG - chr7_4:20407589-20407608 Msa1144420:intron 60.0%
TCCAGATCCTAGAGGTCCGC+CGG + chr7_4:20407599-20407618 None:intergenic 60.0%
!! TCAGGTACCGGCAGCCATGA+GGG + chr7_4:20408577-20408596 None:intergenic 60.0%
! GCAGGTTAGCCCTCCGTCTC+TGG - chr7_4:20404691-20404710 Msa1144420:intron 65.0%
!! GTCAGGTACCGGCAGCCATG+AGG + chr7_4:20408578-20408597 None:intergenic 65.0%
!! GCCGGCGGACCTCTAGGATC+TGG - chr7_4:20407595-20407614 Msa1144420:intron 70.0%
GGGTCGTCCCTCATGGCTGC+CGG - chr7_4:20408567-20408586 Msa1144420:intron 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 20403197 20409308 20403197 ID=Msa1144420;Name=Msa1144420
chr7_4 mRNA 20403197 20409308 20403197 ID=Msa1144420-mRNA-1;Parent=Msa1144420;Name=Msa1144420-mRNA-1;_AED=0.15;_eAED=0.15;_QI=170|0.90|1|1|1|1|12|481|330
chr7_4 exon 20403197 20403779 20403197 ID=Msa1144420-mRNA-1:exon:4916;Parent=Msa1144420-mRNA-1
chr7_4 exon 20403869 20404008 20403869 ID=Msa1144420-mRNA-1:exon:4915;Parent=Msa1144420-mRNA-1
chr7_4 exon 20404523 20404593 20404523 ID=Msa1144420-mRNA-1:exon:4914;Parent=Msa1144420-mRNA-1
chr7_4 exon 20404879 20404939 20404879 ID=Msa1144420-mRNA-1:exon:4913;Parent=Msa1144420-mRNA-1
chr7_4 exon 20405625 20405727 20405625 ID=Msa1144420-mRNA-1:exon:4912;Parent=Msa1144420-mRNA-1
chr7_4 exon 20406172 20406233 20406172 ID=Msa1144420-mRNA-1:exon:4911;Parent=Msa1144420-mRNA-1
chr7_4 exon 20406428 20406506 20406428 ID=Msa1144420-mRNA-1:exon:4910;Parent=Msa1144420-mRNA-1
chr7_4 exon 20406643 20406687 20406643 ID=Msa1144420-mRNA-1:exon:4909;Parent=Msa1144420-mRNA-1
chr7_4 exon 20406843 20406961 20406843 ID=Msa1144420-mRNA-1:exon:4908;Parent=Msa1144420-mRNA-1
chr7_4 exon 20407811 20407886 20407811 ID=Msa1144420-mRNA-1:exon:4907;Parent=Msa1144420-mRNA-1
chr7_4 exon 20408810 20408863 20408810 ID=Msa1144420-mRNA-1:exon:4906;Parent=Msa1144420-mRNA-1
chr7_4 exon 20409058 20409308 20409058 ID=Msa1144420-mRNA-1:exon:4905;Parent=Msa1144420-mRNA-1
chr7_4 five_prime_UTR 20409139 20409308 20409139 ID=Msa1144420-mRNA-1:five_prime_utr;Parent=Msa1144420-mRNA-1
chr7_4 CDS 20409058 20409138 20409058 ID=Msa1144420-mRNA-1:cds;Parent=Msa1144420-mRNA-1
chr7_4 CDS 20408810 20408863 20408810 ID=Msa1144420-mRNA-1:cds;Parent=Msa1144420-mRNA-1
chr7_4 CDS 20407811 20407886 20407811 ID=Msa1144420-mRNA-1:cds;Parent=Msa1144420-mRNA-1
chr7_4 CDS 20406843 20406961 20406843 ID=Msa1144420-mRNA-1:cds;Parent=Msa1144420-mRNA-1
chr7_4 CDS 20406643 20406687 20406643 ID=Msa1144420-mRNA-1:cds;Parent=Msa1144420-mRNA-1
chr7_4 CDS 20406428 20406506 20406428 ID=Msa1144420-mRNA-1:cds;Parent=Msa1144420-mRNA-1
chr7_4 CDS 20406172 20406233 20406172 ID=Msa1144420-mRNA-1:cds;Parent=Msa1144420-mRNA-1
chr7_4 CDS 20405625 20405727 20405625 ID=Msa1144420-mRNA-1:cds;Parent=Msa1144420-mRNA-1
chr7_4 CDS 20404879 20404939 20404879 ID=Msa1144420-mRNA-1:cds;Parent=Msa1144420-mRNA-1
chr7_4 CDS 20404523 20404593 20404523 ID=Msa1144420-mRNA-1:cds;Parent=Msa1144420-mRNA-1
chr7_4 CDS 20403869 20404008 20403869 ID=Msa1144420-mRNA-1:cds;Parent=Msa1144420-mRNA-1
chr7_4 CDS 20403678 20403779 20403678 ID=Msa1144420-mRNA-1:cds;Parent=Msa1144420-mRNA-1
chr7_4 three_prime_UTR 20403197 20403677 20403197 ID=Msa1144420-mRNA-1:three_prime_utr;Parent=Msa1144420-mRNA-1
Gene Sequence

>Msa1144420

ATGGAAATCAGTAGAGCTACAGCTCTCACTTGGTCTCACACCGTCTCTCCTTCTCTTCACCTTCCTCAACCCCTCCTCTTTACCAGAGAGGCTAGGAGGTTCAGAGTTTGGTGTGGCACTGATCAAAGCTCCAAGGGAGATCAAATGATCATATCTGTAACTGGAGCAACAGGTTTTATAGGTAAAAGATTGGTGCAAAAGCTGCAAGCAGTGAAAGACTTTCCAGGAGTCAAGATTGCTGGGGAACCAGAATGGAAAGATTGTATTCAGGGTTCAACAGGAGTTGTGAATTTGGCCGGATTGCCGATAAGTACCAGATGGTCTTCTGAGATAAAGAAAGAAATCAAGGAGAGCAGGGTTAGAGTAACCTCAAAAGTTGTAGATTTGATAAAAAAGGCACCAGATGAAATTCGACCCAAAGTTTTGGTTAGTGCAACAGCCGTTGGTTATTATGGCACCAGTGAGACACAGGTCTTTGATGAACAAAGTCCATCTGGAAAGGATTATCTGGCTGAGGTATGCAGAGAATGGGAATCAACGGCGCTAAAGGCCAATGGAGATGTTAGAGTGGCTCTAATTCGCATCGGTGTTGTTCTTGGTAAAGATGGTGGAGCACTAGCTAAAATGATACCTCTTTTCATGATGTTTGCCGGCGGACCTCTAGGATCTGGAAATCAATGGTTCTCCTGGATTCATCTAGATGACATTGTCAATTTAATATATGAAGCACTATCAAATCCATCCTACAAAGGAGTTATCAATGGAACTGCACCAAATCCTGTGCGATTATCAGAATTGTGTGAACAGCTGGGAAATGTTTTGGGTCGTCCCTCATGGCTGCCGGTACCTGACTTTGCACTCAAGGCTGTTCTTGGAGAAGGTGCTACTGTGGTTTTAGAAGGACAAAGAGTGGTTCCTACTCAAGCGAAGAAGCTGGGTTTCTCATTCAAATATTCATATGTGAAAGATGCCCTTAAAGCAATTATTTCTTGA

Protein sequence

>Msa1144420

MEISRATALTWSHTVSPSLHLPQPLLFTREARRFRVWCGTDQSSKGDQMIISVTGATGFIGKRLVQKLQAVKDFPGVKIAGEPEWKDCIQGSTGVVNLAGLPISTRWSSEIKKEIKESRVRVTSKVVDLIKKAPDEIRPKVLVSATAVGYYGTSETQVFDEQSPSGKDYLAEVCREWESTALKANGDVRVALIRIGVVLGKDGGALAKMIPLFMMFAGGPLGSGNQWFSWIHLDDIVNLIYEALSNPSYKGVINGTAPNPVRLSELCEQLGNVLGRPSWLPVPDFALKAVLGEGATVVLEGQRVVPTQAKKLGFSFKYSYVKDALKAIIS*