AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0832270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0832270 MtrunA17_Chr5g0393651 88.811 143 6 1 1 133 1 143 3.36e-78 227
Msa0832270 MtrunA17_Chr5g0408111 42.105 95 55 0 38 132 37 131 1.24e-24 91.7
Msa0832270 MtrunA17_Chr3g0099661 51.327 113 11 5 21 129 29 101 9.14e-19 81.3
Msa0832270 MtrunA17_Chr3g0100001 42.424 66 38 0 66 131 30 95 5.22e-17 70.9
Msa0832270 MtrunA17_Chr3g0100321 41.111 90 51 2 44 132 147 235 1.60e-15 71.2
Msa0832270 MtrunA17_Chr5g0402651 40.580 69 40 1 62 130 138 205 9.21e-15 69.3
Msa0832270 MtrunA17_Chr5g0402651 37.805 82 50 1 51 132 260 340 4.11e-14 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0832270 AT2G14880.1 55.944 143 50 6 1 132 1 141 4.54e-42 136
Msa0832270 AT4G34290.1 56.034 116 39 2 29 132 29 144 1.06e-34 117
Msa0832270 AT3G03590.1 52.564 78 37 0 55 132 63 140 2.26e-25 94.0
Msa0832270 AT1G31760.1 40.594 101 59 1 32 131 8 108 6.81e-25 92.0
Msa0832270 AT2G35605.1 47.253 91 48 0 41 131 15 105 1.26e-24 91.3
Msa0832270 AT2G14880.3 56.471 85 32 4 13 94 21 103 4.08e-21 82.0
Msa0832270 AT2G14880.2 56.471 85 32 4 13 94 21 103 4.08e-21 82.0
Msa0832270 AT4G26810.2 34.000 100 61 2 32 131 1 95 1.61e-15 67.8
Msa0832270 AT4G26810.1 34.000 100 61 2 32 131 1 95 1.61e-15 67.8
Msa0832270 AT4G22360.1 37.624 101 54 3 40 132 173 272 1.96e-15 71.6
Msa0832270 AT1G49520.1 37.209 86 50 2 45 130 243 324 1.93e-13 66.2
Msa0832270 AT1G49520.1 32.895 76 50 1 55 130 101 175 2.05e-11 60.5
Msa0832270 AT3G48600.1 33.019 106 67 2 32 133 8 113 6.39e-13 62.8
Msa0832270 AT3G19080.2 35.165 91 56 2 40 130 250 337 8.57e-13 64.3
Msa0832270 AT3G19080.2 34.211 76 49 1 55 130 115 189 1.30e-11 60.8
Msa0832270 AT3G48600.2 33.019 106 67 2 32 133 8 113 1.45e-12 62.8
Msa0832270 AT3G19080.4 34.783 92 57 2 40 131 250 338 1.56e-12 63.5
Msa0832270 AT3G19080.4 33.766 77 50 1 55 131 115 190 1.99e-11 60.5
Msa0832270 AT3G19080.3 34.783 92 57 2 40 131 250 338 1.56e-12 63.5
Msa0832270 AT3G19080.3 33.766 77 50 1 55 131 115 190 1.99e-11 60.5
Msa0832270 AT3G19080.1 34.783 92 57 2 40 131 250 338 1.61e-12 63.5
Msa0832270 AT3G19080.1 33.766 77 50 1 55 131 115 190 2.09e-11 60.5

Find 67 sgRNAs with CRISPR-Local

Find 255 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCAAATGCTCTTGAGGGCT+TGG 0.201712 5_4:-5322372 None:intergenic
GTGTATGGAACTGTTATATT+TGG 0.267520 5_4:+5323466 Msa0832270:three_prime_UTR
GTGGCCTTTGCCTTCAATTA+AGG 0.272510 5_4:-5323397 None:intergenic
GCTCTTGAGGGCTTGGGTTC+GGG 0.285856 5_4:-5322365 None:intergenic
TGCTCTTGAGGGCTTGGGTT+CGG 0.309630 5_4:-5322366 None:intergenic
CCCAAGCCCTCAAGAGCATT+TGG 0.313567 5_4:+5322371 Msa0832270:CDS
GAGCATTTGGGCCCACATTA+AGG 0.313899 5_4:+5322384 Msa0832270:CDS
CTTGGAGTCCTGAGAGTTAG+AGG 0.343205 5_4:-5322181 None:intergenic
CCAAATGCTCTTGAGGGCTT+GGG 0.352861 5_4:-5322371 None:intergenic
GGCTTGGGTTCGGGAAATCT+CGG 0.358689 5_4:-5322356 None:intergenic
GTTGATATGCTTGAGATTGC+TGG 0.364505 5_4:+5323356 Msa0832270:CDS
GCCCTCACTTCCTTAATTGA+AGG 0.384410 5_4:+5323387 Msa0832270:CDS
CCGACGAGGTCTTGCATCTC+GGG 0.390790 5_4:-5322328 None:intergenic
ATCATATGAAGGCCACGTTT+TGG 0.393931 5_4:+5323444 Msa0832270:three_prime_UTR
AACTAAACCTTGAGACTTAG+TGG 0.395134 5_4:-5323416 None:intergenic
TAAGGCTACTACTATGTTGC+AGG 0.405113 5_4:-5323500 None:intergenic
GCCGACGAGGTCTTGCATCT+CGG 0.410466 5_4:-5322329 None:intergenic
ACAGTTGAGCGGAGTGAGTA+AGG 0.429709 5_4:+5322022 Msa0832270:five_prime_UTR
AAACTGAAGAAGGTATTTGC+AGG 0.431242 5_4:+5323323 Msa0832270:CDS
CCAAGCCCTCAAGAGCATTT+GGG 0.438538 5_4:+5322372 Msa0832270:CDS
GCTTGGGTTCGGGAAATCTC+GGG 0.463473 5_4:-5322355 None:intergenic
TCCCACACCTTCGTTGCGTA+TGG 0.464306 5_4:+5322213 Msa0832270:CDS
CATCTCCTCCTCTAACTCTC+AGG 0.478833 5_4:+5322173 Msa0832270:CDS
TAGTACTTCAGGTACAGAAC+AGG 0.480293 5_4:+5323538 Msa0832270:three_prime_UTR
TCGCTCGCTGTGAGTGAAGA+TGG 0.482080 5_4:+5322120 Msa0832270:exon
CATTAAGGAACACAATCTTC+AGG 0.486338 5_4:+5322399 Msa0832270:CDS
GTCTCTCAGCCTCCACCCAC+CGG 0.498374 5_4:+5322265 Msa0832270:CDS
GCCTTCAATTAAGGAAGTGA+GGG 0.502350 5_4:-5323388 None:intergenic
GTGGGCCCAAATGCTCTTGA+GGG 0.503891 5_4:-5322377 None:intergenic
TTGAATAGAATAGAATAGAA+TGG 0.511708 5_4:-5322093 None:intergenic
CAGTTGAGCGGAGTGAGTAA+GGG 0.515067 5_4:+5322023 Msa0832270:five_prime_UTR
CTCTAACTCTCAGGACTCCA+AGG 0.525205 5_4:+5322182 Msa0832270:CDS
TGTGGGCCCAAATGCTCTTG+AGG 0.532300 5_4:-5322378 None:intergenic
GAAGATTGTGTTCCTTAATG+TGG 0.537334 5_4:-5322396 None:intergenic
AGTGAAGATGGCGGTTTCAA+TGG 0.537531 5_4:+5322132 Msa0832270:exon
AGGAGATGATAATAATAGTC+CGG 0.546560 5_4:-5322158 None:intergenic
GGTGGGTGGAGGCTGAGAGA+CGG 0.548280 5_4:-5322263 None:intergenic
CGGTGGCAGAAGTAACTGTT+CGG 0.553786 5_4:-5322243 None:intergenic
TGCCTTCAATTAAGGAAGTG+AGG 0.555494 5_4:-5323389 None:intergenic
AAGATTGTGTTCCTTAATGT+GGG 0.565657 5_4:-5322395 None:intergenic
AGCCATACGCAACGAAGGTG+TGG 0.571765 5_4:-5322215 None:intergenic
GCCATACGCAACGAAGGTGT+GGG 0.575259 5_4:-5322214 None:intergenic
CTGTGATGAGAAACTGAAGA+AGG 0.578111 5_4:+5323313 Msa0832270:CDS
ATGGCGGTTTCAATGGCTAC+CGG 0.582248 5_4:+5322139 Msa0832270:CDS
AGTTGAGCGGAGTGAGTAAG+GGG 0.583079 5_4:+5322024 Msa0832270:five_prime_UTR
GGGTGGAGGCTGAGAGACGG+TGG 0.583952 5_4:-5322260 None:intergenic
GGTGTGGGAAACGCAAACCT+TGG 0.584167 5_4:-5322199 None:intergenic
ATCTTCACTCACAGCGAGCG+AGG 0.586099 5_4:-5322118 None:intergenic
AACTGAAGAAGGTATTTGCA+GGG 0.589332 5_4:+5323324 Msa0832270:CDS
CCCACCGGAGGCAAAATTCG+CGG 0.592965 5_4:+5322280 Msa0832270:CDS
ACTTCCTTAATTGAAGGCAA+AGG 0.598604 5_4:+5323393 Msa0832270:exon
TCTTCACTCACAGCGAGCGA+GGG 0.606761 5_4:-5322117 None:intergenic
GCAAAGGCCACTAAGTCTCA+AGG 0.608526 5_4:+5323409 Msa0832270:three_prime_UTR
AAATCTCGGGTTGGCCGACG+AGG 0.609292 5_4:-5322342 None:intergenic
GGGTTCGGGAAATCTCGGGT+TGG 0.610231 5_4:-5322351 None:intergenic
TCTCAGCCTCCACCCACCGG+AGG 0.623094 5_4:+5322268 Msa0832270:CDS
CGACGAGGTCTTGCATCTCG+GGG 0.623606 5_4:-5322327 None:intergenic
TTGAGCGGAGTGAGTAAGGG+GGG 0.626354 5_4:+5322026 Msa0832270:five_prime_UTR
CCCGAGATGCAAGACCTCGT+CGG 0.633591 5_4:+5322328 Msa0832270:CDS
AGAAGGAGATAACAGTTGAG+CGG 0.660905 5_4:+5322011 None:intergenic
TGAGCGGAGTGAGTAAGGGG+GGG 0.664442 5_4:+5322027 Msa0832270:five_prime_UTR
GGAGTCCTGAGAGTTAGAGG+AGG 0.667796 5_4:-5322178 None:intergenic
CTCGCTGTGAGTGAAGATGG+CGG 0.682218 5_4:+5322123 Msa0832270:exon
GACGAGGTCTTGCATCTCGG+GGG 0.684378 5_4:-5322326 None:intergenic
GTTGAGCGGAGTGAGTAAGG+GGG 0.689094 5_4:+5322025 Msa0832270:five_prime_UTR
GCAGAAGTAACTGTTCGGAG+TGG 0.693933 5_4:-5322238 None:intergenic
CAGTTCCATACACCAAAACG+TGG 0.702843 5_4:-5323456 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAATAATAATAATTAAA+AGG - chr5_4:5323624-5323643 None:intergenic 0.0%
!! TTATTATTATTATTATTATT+AGG + chr5_4:5323066-5323085 Msa0832270:intron 0.0%
!! TAATAATAATAATAATTAAA+AGG - chr5_4:5323624-5323643 None:intergenic 0.0%
!! TTATTATTATTATTATTATT+AGG + chr5_4:5323066-5323085 Msa0832270:intron 0.0%
!!! ATTATTATTAGGTTTTTTAT+TGG + chr5_4:5323646-5323665 Msa0832270:three_prime_UTR 10.0%
!!! ATTATTATTAGGTTTTTTAT+TGG + chr5_4:5323646-5323665 Msa0832270:three_prime_UTR 10.0%
!!! TTTAGGTGAAATTTTAAAAA+AGG - chr5_4:5322465-5322484 None:intergenic 15.0%
!!! TCAAAAACAAATAATTTGTA+CGG - chr5_4:5322488-5322507 None:intergenic 15.0%
!!! TTTATTTTTAACCAACTAAA+TGG + chr5_4:5322762-5322781 Msa0832270:intron 15.0%
!!! TTATTTTTAACCAACTAAAT+GGG + chr5_4:5322763-5322782 Msa0832270:intron 15.0%
!!! TTAGTTTTTATATCATATGA+AGG + chr5_4:5323433-5323452 Msa0832270:three_prime_UTR 15.0%
!!! TTTAGGTGAAATTTTAAAAA+AGG - chr5_4:5322465-5322484 None:intergenic 15.0%
!!! TCAAAAACAAATAATTTGTA+CGG - chr5_4:5322488-5322507 None:intergenic 15.0%
!!! TTTATTTTTAACCAACTAAA+TGG + chr5_4:5322762-5322781 Msa0832270:intron 15.0%
!!! TTATTTTTAACCAACTAAAT+GGG + chr5_4:5322763-5322782 Msa0832270:intron 15.0%
!!! TTAGTTTTTATATCATATGA+AGG + chr5_4:5323433-5323452 Msa0832270:three_prime_UTR 15.0%
!! TTGAATAGAATAGAATAGAA+TGG - chr5_4:5322096-5322115 None:intergenic 20.0%
!! TAAGTTGTTAGTTATTAAGA+TGG + chr5_4:5322540-5322559 Msa0832270:intron 20.0%
!! CAAAATAAAACATGAACAAA+TGG - chr5_4:5322621-5322640 None:intergenic 20.0%
!! GTCTGAATGAATATATTATT+AGG + chr5_4:5322658-5322677 Msa0832270:intron 20.0%
!! TATATTATTAGGCACTAATT+TGG + chr5_4:5322669-5322688 Msa0832270:intron 20.0%
!! ATATTATTAGGCACTAATTT+GGG + chr5_4:5322670-5322689 Msa0832270:intron 20.0%
!!! TATGCAATTCTGTTTTATAA+TGG + chr5_4:5322958-5322977 Msa0832270:intron 20.0%
!! AACATGTAGTTTAGATTATA+TGG - chr5_4:5323018-5323037 None:intergenic 20.0%
!! CTAACAAAAACAAAAAACTA+AGG - chr5_4:5323521-5323540 None:intergenic 20.0%
!! TTGAATAGAATAGAATAGAA+TGG - chr5_4:5322096-5322115 None:intergenic 20.0%
!! TAAGTTGTTAGTTATTAAGA+TGG + chr5_4:5322540-5322559 Msa0832270:intron 20.0%
!! CAAAATAAAACATGAACAAA+TGG - chr5_4:5322621-5322640 None:intergenic 20.0%
!! GTCTGAATGAATATATTATT+AGG + chr5_4:5322658-5322677 Msa0832270:intron 20.0%
!! TATATTATTAGGCACTAATT+TGG + chr5_4:5322669-5322688 Msa0832270:intron 20.0%
!! ATATTATTAGGCACTAATTT+GGG + chr5_4:5322670-5322689 Msa0832270:intron 20.0%
!!! TATGCAATTCTGTTTTATAA+TGG + chr5_4:5322958-5322977 Msa0832270:intron 20.0%
!! AACATGTAGTTTAGATTATA+TGG - chr5_4:5323018-5323037 None:intergenic 20.0%
!! CTAACAAAAACAAAAAACTA+AGG - chr5_4:5323521-5323540 None:intergenic 20.0%
!! ACAAATAATTTGTACGGTTT+AGG - chr5_4:5322482-5322501 None:intergenic 25.0%
! TATATTCATTCAGACCAAAT+TGG - chr5_4:5322653-5322672 None:intergenic 25.0%
! AAAAGAATGAAAACGAGATT+TGG - chr5_4:5322745-5322764 None:intergenic 25.0%
!!! CAAAAAGTTGATGTACAAAT+TGG - chr5_4:5322792-5322811 None:intergenic 25.0%
!! ATGGATTCTATTGTCAATTT+TGG + chr5_4:5322990-5323009 Msa0832270:intron 25.0%
! CATTCAATTTATGGATGATA+CGG - chr5_4:5323162-5323181 None:intergenic 25.0%
!!! TTTGTTTTTGTTAGTACTTC+AGG + chr5_4:5323527-5323546 Msa0832270:three_prime_UTR 25.0%
! GATTATTTATTATTCTGCTC+AGG + chr5_4:5323706-5323725 Msa0832270:three_prime_UTR 25.0%
!! ACAAATAATTTGTACGGTTT+AGG - chr5_4:5322482-5322501 None:intergenic 25.0%
! TATATTCATTCAGACCAAAT+TGG - chr5_4:5322653-5322672 None:intergenic 25.0%
! AAAAGAATGAAAACGAGATT+TGG - chr5_4:5322745-5322764 None:intergenic 25.0%
!!! CAAAAAGTTGATGTACAAAT+TGG - chr5_4:5322792-5322811 None:intergenic 25.0%
!! ATGGATTCTATTGTCAATTT+TGG + chr5_4:5322990-5323009 Msa0832270:intron 25.0%
! CATTCAATTTATGGATGATA+CGG - chr5_4:5323162-5323181 None:intergenic 25.0%
!!! TTTGTTTTTGTTAGTACTTC+AGG + chr5_4:5323527-5323546 Msa0832270:three_prime_UTR 25.0%
AGGAGATGATAATAATAGTC+CGG - chr5_4:5322161-5322180 None:intergenic 30.0%
AAGATTGTGTTCCTTAATGT+GGG - chr5_4:5322398-5322417 None:intergenic 30.0%
TAAACTGCATAGATTCAGAA+TGG + chr5_4:5322517-5322536 Msa0832270:intron 30.0%
!! TTTTGACTCAACAACCAATT+TGG + chr5_4:5322636-5322655 Msa0832270:intron 30.0%
TTGGGAATAATCGGTTATTA+TGG + chr5_4:5322688-5322707 Msa0832270:intron 30.0%
TGGGAATAATCGGTTATTAT+GGG + chr5_4:5322689-5322708 Msa0832270:intron 30.0%
AAATTGGATTCCCATTTAGT+TGG - chr5_4:5322776-5322795 None:intergenic 30.0%
AAATTTGTGCAATTGAAACG+CGG - chr5_4:5322923-5322942 None:intergenic 30.0%
! TTTATAATGGTTGATGCTGA+TGG + chr5_4:5322971-5322990 Msa0832270:intron 30.0%
TCCATAAATTGAATGTTCTC+TGG + chr5_4:5323167-5323186 Msa0832270:intron 30.0%
CCATAAATTGAATGTTCTCT+GGG + chr5_4:5323168-5323187 Msa0832270:intron 30.0%
GTGTATGGAACTGTTATATT+TGG + chr5_4:5323466-5323485 Msa0832270:three_prime_UTR 30.0%
AGGAGATGATAATAATAGTC+CGG - chr5_4:5322161-5322180 None:intergenic 30.0%
AAGATTGTGTTCCTTAATGT+GGG - chr5_4:5322398-5322417 None:intergenic 30.0%
TAAACTGCATAGATTCAGAA+TGG + chr5_4:5322517-5322536 Msa0832270:intron 30.0%
!! TTTTGACTCAACAACCAATT+TGG + chr5_4:5322636-5322655 Msa0832270:intron 30.0%
TTGGGAATAATCGGTTATTA+TGG + chr5_4:5322688-5322707 Msa0832270:intron 30.0%
TGGGAATAATCGGTTATTAT+GGG + chr5_4:5322689-5322708 Msa0832270:intron 30.0%
AAATTGGATTCCCATTTAGT+TGG - chr5_4:5322776-5322795 None:intergenic 30.0%
AAATTTGTGCAATTGAAACG+CGG - chr5_4:5322923-5322942 None:intergenic 30.0%
! TTTATAATGGTTGATGCTGA+TGG + chr5_4:5322971-5322990 Msa0832270:intron 30.0%
TCCATAAATTGAATGTTCTC+TGG + chr5_4:5323167-5323186 Msa0832270:intron 30.0%
CCATAAATTGAATGTTCTCT+GGG + chr5_4:5323168-5323187 Msa0832270:intron 30.0%
GTGTATGGAACTGTTATATT+TGG + chr5_4:5323466-5323485 Msa0832270:three_prime_UTR 30.0%
GAAGATTGTGTTCCTTAATG+TGG - chr5_4:5322399-5322418 None:intergenic 35.0%
CATTAAGGAACACAATCTTC+AGG + chr5_4:5322399-5322418 Msa0832270:CDS 35.0%
TATCCTCAAGAGAAAGAGAA+AGG - chr5_4:5322437-5322456 None:intergenic 35.0%
GGCACTAATTTGGGAATAAT+CGG + chr5_4:5322679-5322698 Msa0832270:intron 35.0%
GGGAATAATCGGTTATTATG+GGG + chr5_4:5322690-5322709 Msa0832270:intron 35.0%
GGAATAATCGGTTATTATGG+GGG + chr5_4:5322691-5322710 Msa0832270:intron 35.0%
TTATGGGGGCTAAATTCAAT+TGG + chr5_4:5322705-5322724 Msa0832270:intron 35.0%
TATGGGGGCTAAATTCAATT+GGG + chr5_4:5322706-5322725 Msa0832270:intron 35.0%
ATGTAGAACAAGTGCAAACA+AGG - chr5_4:5322843-5322862 None:intergenic 35.0%
ACATAATTAACCTGTCTGTC+TGG + chr5_4:5322873-5322892 Msa0832270:intron 35.0%
AAAGCAGAGTTAGTACTTGA+TGG - chr5_4:5322899-5322918 None:intergenic 35.0%
CCCAGAGAACATTCAATTTA+TGG - chr5_4:5323171-5323190 None:intergenic 35.0%
TTATGAATGCAGGATAGCAT+TGG - chr5_4:5323210-5323229 None:intergenic 35.0%
CTGAACGTATTTATGAATGC+AGG - chr5_4:5323220-5323239 None:intergenic 35.0%
! GAATAAGCCTCTTTTTCTCA+GGG - chr5_4:5323292-5323311 None:intergenic 35.0%
!! AAACTGAAGAAGGTATTTGC+AGG + chr5_4:5323323-5323342 Msa0832270:CDS 35.0%
!! AACTGAAGAAGGTATTTGCA+GGG + chr5_4:5323324-5323343 Msa0832270:CDS 35.0%
ACTTCCTTAATTGAAGGCAA+AGG + chr5_4:5323393-5323412 Msa0832270:exon 35.0%
AACTAAACCTTGAGACTTAG+TGG - chr5_4:5323419-5323438 None:intergenic 35.0%
GAAGATTGTGTTCCTTAATG+TGG - chr5_4:5322399-5322418 None:intergenic 35.0%
CATTAAGGAACACAATCTTC+AGG + chr5_4:5322399-5322418 Msa0832270:CDS 35.0%
TATCCTCAAGAGAAAGAGAA+AGG - chr5_4:5322437-5322456 None:intergenic 35.0%
GGCACTAATTTGGGAATAAT+CGG + chr5_4:5322679-5322698 Msa0832270:intron 35.0%
GGGAATAATCGGTTATTATG+GGG + chr5_4:5322690-5322709 Msa0832270:intron 35.0%
GGAATAATCGGTTATTATGG+GGG + chr5_4:5322691-5322710 Msa0832270:intron 35.0%
TTATGGGGGCTAAATTCAAT+TGG + chr5_4:5322705-5322724 Msa0832270:intron 35.0%
TATGGGGGCTAAATTCAATT+GGG + chr5_4:5322706-5322725 Msa0832270:intron 35.0%
ATGTAGAACAAGTGCAAACA+AGG - chr5_4:5322843-5322862 None:intergenic 35.0%
ACATAATTAACCTGTCTGTC+TGG + chr5_4:5322873-5322892 Msa0832270:intron 35.0%
AAAGCAGAGTTAGTACTTGA+TGG - chr5_4:5322899-5322918 None:intergenic 35.0%
CCCAGAGAACATTCAATTTA+TGG - chr5_4:5323171-5323190 None:intergenic 35.0%
TTATGAATGCAGGATAGCAT+TGG - chr5_4:5323210-5323229 None:intergenic 35.0%
CTGAACGTATTTATGAATGC+AGG - chr5_4:5323220-5323239 None:intergenic 35.0%
! GAATAAGCCTCTTTTTCTCA+GGG - chr5_4:5323292-5323311 None:intergenic 35.0%
!! AAACTGAAGAAGGTATTTGC+AGG + chr5_4:5323323-5323342 Msa0832270:CDS 35.0%
!! AACTGAAGAAGGTATTTGCA+GGG + chr5_4:5323324-5323343 Msa0832270:CDS 35.0%
ACTTCCTTAATTGAAGGCAA+AGG + chr5_4:5323393-5323412 Msa0832270:exon 35.0%
AACTAAACCTTGAGACTTAG+TGG - chr5_4:5323419-5323438 None:intergenic 35.0%
!!! ATCTCGGGGGAGATTTTTTT+AGG - chr5_4:5322316-5322335 None:intergenic 40.0%
TCTCCTTTCTCTTTCTCTTG+AGG + chr5_4:5322431-5322450 Msa0832270:intron 40.0%
GTCTGTACAAGAGTAGTTGT+AGG - chr5_4:5323113-5323132 None:intergenic 40.0%
! GCAGGATAGCATTGGATTAA+TGG - chr5_4:5323202-5323221 None:intergenic 40.0%
TACGTTCAGCAACGTTTGAT+TGG + chr5_4:5323231-5323250 Msa0832270:intron 40.0%
TTCAGAACCCTGAGAAAAAG+AGG + chr5_4:5323282-5323301 Msa0832270:intron 40.0%
! CGAATAAGCCTCTTTTTCTC+AGG - chr5_4:5323293-5323312 None:intergenic 40.0%
CTGTGATGAGAAACTGAAGA+AGG + chr5_4:5323313-5323332 Msa0832270:CDS 40.0%
GTTGATATGCTTGAGATTGC+TGG + chr5_4:5323356-5323375 Msa0832270:CDS 40.0%
GCCTTCAATTAAGGAAGTGA+GGG - chr5_4:5323391-5323410 None:intergenic 40.0%
TGCCTTCAATTAAGGAAGTG+AGG - chr5_4:5323392-5323411 None:intergenic 40.0%
! ATCATATGAAGGCCACGTTT+TGG + chr5_4:5323444-5323463 Msa0832270:three_prime_UTR 40.0%
TAAGGCTACTACTATGTTGC+AGG - chr5_4:5323503-5323522 None:intergenic 40.0%
TAGTACTTCAGGTACAGAAC+AGG + chr5_4:5323538-5323557 Msa0832270:three_prime_UTR 40.0%
!!! ATCTCGGGGGAGATTTTTTT+AGG - chr5_4:5322316-5322335 None:intergenic 40.0%
TCTCCTTTCTCTTTCTCTTG+AGG + chr5_4:5322431-5322450 Msa0832270:intron 40.0%
GTCTGTACAAGAGTAGTTGT+AGG - chr5_4:5323113-5323132 None:intergenic 40.0%
! GCAGGATAGCATTGGATTAA+TGG - chr5_4:5323202-5323221 None:intergenic 40.0%
TACGTTCAGCAACGTTTGAT+TGG + chr5_4:5323231-5323250 Msa0832270:intron 40.0%
TTCAGAACCCTGAGAAAAAG+AGG + chr5_4:5323282-5323301 Msa0832270:intron 40.0%
! CGAATAAGCCTCTTTTTCTC+AGG - chr5_4:5323293-5323312 None:intergenic 40.0%
CTGTGATGAGAAACTGAAGA+AGG + chr5_4:5323313-5323332 Msa0832270:CDS 40.0%
GTTGATATGCTTGAGATTGC+TGG + chr5_4:5323356-5323375 Msa0832270:CDS 40.0%
GCCTTCAATTAAGGAAGTGA+GGG - chr5_4:5323391-5323410 None:intergenic 40.0%
TGCCTTCAATTAAGGAAGTG+AGG - chr5_4:5323392-5323411 None:intergenic 40.0%
! ATCATATGAAGGCCACGTTT+TGG + chr5_4:5323444-5323463 Msa0832270:three_prime_UTR 40.0%
TAAGGCTACTACTATGTTGC+AGG - chr5_4:5323503-5323522 None:intergenic 40.0%
TAGTACTTCAGGTACAGAAC+AGG + chr5_4:5323538-5323557 Msa0832270:three_prime_UTR 40.0%
! AGTGAAGATGGCGGTTTCAA+TGG + chr5_4:5322132-5322151 Msa0832270:exon 45.0%
! AATACCGCGAATTTTGCCTC+CGG - chr5_4:5322287-5322306 None:intergenic 45.0%
GCCCTCACTTCCTTAATTGA+AGG + chr5_4:5323387-5323406 Msa0832270:CDS 45.0%
GTGGCCTTTGCCTTCAATTA+AGG - chr5_4:5323400-5323419 None:intergenic 45.0%
CAGTTCCATACACCAAAACG+TGG - chr5_4:5323459-5323478 None:intergenic 45.0%
! AGTGAAGATGGCGGTTTCAA+TGG + chr5_4:5322132-5322151 Msa0832270:exon 45.0%
! AATACCGCGAATTTTGCCTC+CGG - chr5_4:5322287-5322306 None:intergenic 45.0%
GCCCTCACTTCCTTAATTGA+AGG + chr5_4:5323387-5323406 Msa0832270:CDS 45.0%
GTGGCCTTTGCCTTCAATTA+AGG - chr5_4:5323400-5323419 None:intergenic 45.0%
CAGTTCCATACACCAAAACG+TGG - chr5_4:5323459-5323478 None:intergenic 45.0%
ACAGTTGAGCGGAGTGAGTA+AGG + chr5_4:5322022-5322041 Msa0832270:five_prime_UTR 50.0%
CAGTTGAGCGGAGTGAGTAA+GGG + chr5_4:5322023-5322042 Msa0832270:five_prime_UTR 50.0%
AGTTGAGCGGAGTGAGTAAG+GGG + chr5_4:5322024-5322043 Msa0832270:five_prime_UTR 50.0%
ATGGCGGTTTCAATGGCTAC+CGG + chr5_4:5322139-5322158 Msa0832270:CDS 50.0%
CATCTCCTCCTCTAACTCTC+AGG + chr5_4:5322173-5322192 Msa0832270:CDS 50.0%
CTTGGAGTCCTGAGAGTTAG+AGG - chr5_4:5322184-5322203 None:intergenic 50.0%
CTCTAACTCTCAGGACTCCA+AGG + chr5_4:5322182-5322201 Msa0832270:CDS 50.0%
GCAGAAGTAACTGTTCGGAG+TGG - chr5_4:5322241-5322260 None:intergenic 50.0%
CGGTGGCAGAAGTAACTGTT+CGG - chr5_4:5322246-5322265 None:intergenic 50.0%
CCAAATGCTCTTGAGGGCTT+GGG - chr5_4:5322374-5322393 None:intergenic 50.0%
!! CCAAGCCCTCAAGAGCATTT+GGG + chr5_4:5322372-5322391 Msa0832270:CDS 50.0%
GAGCATTTGGGCCCACATTA+AGG + chr5_4:5322384-5322403 Msa0832270:CDS 50.0%
! TACTTGATGGCCAGACAGAC+AGG - chr5_4:5322886-5322905 None:intergenic 50.0%
GCAAAGGCCACTAAGTCTCA+AGG + chr5_4:5323409-5323428 Msa0832270:three_prime_UTR 50.0%
!! GAAGGCCACGTTTTGGTGTA+TGG + chr5_4:5323451-5323470 Msa0832270:three_prime_UTR 50.0%
ACAGTTGAGCGGAGTGAGTA+AGG + chr5_4:5322022-5322041 Msa0832270:five_prime_UTR 50.0%
CAGTTGAGCGGAGTGAGTAA+GGG + chr5_4:5322023-5322042 Msa0832270:five_prime_UTR 50.0%
AGTTGAGCGGAGTGAGTAAG+GGG + chr5_4:5322024-5322043 Msa0832270:five_prime_UTR 50.0%
ATGGCGGTTTCAATGGCTAC+CGG + chr5_4:5322139-5322158 Msa0832270:CDS 50.0%
CATCTCCTCCTCTAACTCTC+AGG + chr5_4:5322173-5322192 Msa0832270:CDS 50.0%
CTTGGAGTCCTGAGAGTTAG+AGG - chr5_4:5322184-5322203 None:intergenic 50.0%
CTCTAACTCTCAGGACTCCA+AGG + chr5_4:5322182-5322201 Msa0832270:CDS 50.0%
GCAGAAGTAACTGTTCGGAG+TGG - chr5_4:5322241-5322260 None:intergenic 50.0%
CGGTGGCAGAAGTAACTGTT+CGG - chr5_4:5322246-5322265 None:intergenic 50.0%
CCAAATGCTCTTGAGGGCTT+GGG - chr5_4:5322374-5322393 None:intergenic 50.0%
!! CCAAGCCCTCAAGAGCATTT+GGG + chr5_4:5322372-5322391 Msa0832270:CDS 50.0%
GAGCATTTGGGCCCACATTA+AGG + chr5_4:5322384-5322403 Msa0832270:CDS 50.0%
! TACTTGATGGCCAGACAGAC+AGG - chr5_4:5322886-5322905 None:intergenic 50.0%
GCAAAGGCCACTAAGTCTCA+AGG + chr5_4:5323409-5323428 Msa0832270:three_prime_UTR 50.0%
!! GAAGGCCACGTTTTGGTGTA+TGG + chr5_4:5323451-5323470 Msa0832270:three_prime_UTR 50.0%
GTTGAGCGGAGTGAGTAAGG+GGG + chr5_4:5322025-5322044 Msa0832270:five_prime_UTR 55.0%
TTGAGCGGAGTGAGTAAGGG+GGG + chr5_4:5322026-5322045 Msa0832270:five_prime_UTR 55.0%
GAGTAAGGGGGGGATAGTGT+TGG + chr5_4:5322037-5322056 Msa0832270:five_prime_UTR 55.0%
TCTTCACTCACAGCGAGCGA+GGG - chr5_4:5322120-5322139 None:intergenic 55.0%
ATCTTCACTCACAGCGAGCG+AGG - chr5_4:5322121-5322140 None:intergenic 55.0%
TCGCTCGCTGTGAGTGAAGA+TGG + chr5_4:5322120-5322139 Msa0832270:exon 55.0%
CTCGCTGTGAGTGAAGATGG+CGG + chr5_4:5322123-5322142 Msa0832270:exon 55.0%
GGAGTCCTGAGAGTTAGAGG+AGG - chr5_4:5322181-5322200 None:intergenic 55.0%
GGTGTGGGAAACGCAAACCT+TGG - chr5_4:5322202-5322221 None:intergenic 55.0%
TCCCACACCTTCGTTGCGTA+TGG + chr5_4:5322213-5322232 Msa0832270:CDS 55.0%
! GCCATACGCAACGAAGGTGT+GGG - chr5_4:5322217-5322236 None:intergenic 55.0%
AGCCATACGCAACGAAGGTG+TGG - chr5_4:5322218-5322237 None:intergenic 55.0%
AGTGGAGCCATACGCAACGA+AGG - chr5_4:5322223-5322242 None:intergenic 55.0%
GCTTGGGTTCGGGAAATCTC+GGG - chr5_4:5322358-5322377 None:intergenic 55.0%
GGCTTGGGTTCGGGAAATCT+CGG - chr5_4:5322359-5322378 None:intergenic 55.0%
TGCTCTTGAGGGCTTGGGTT+CGG - chr5_4:5322369-5322388 None:intergenic 55.0%
!! CCCAAGCCCTCAAGAGCATT+TGG + chr5_4:5322371-5322390 Msa0832270:CDS 55.0%
CCCAAATGCTCTTGAGGGCT+TGG - chr5_4:5322375-5322394 None:intergenic 55.0%
GTGGGCCCAAATGCTCTTGA+GGG - chr5_4:5322380-5322399 None:intergenic 55.0%
TGTGGGCCCAAATGCTCTTG+AGG - chr5_4:5322381-5322400 None:intergenic 55.0%
GTTGAGCGGAGTGAGTAAGG+GGG + chr5_4:5322025-5322044 Msa0832270:five_prime_UTR 55.0%
TTGAGCGGAGTGAGTAAGGG+GGG + chr5_4:5322026-5322045 Msa0832270:five_prime_UTR 55.0%
GAGTAAGGGGGGGATAGTGT+TGG + chr5_4:5322037-5322056 Msa0832270:five_prime_UTR 55.0%
TCTTCACTCACAGCGAGCGA+GGG - chr5_4:5322120-5322139 None:intergenic 55.0%
ATCTTCACTCACAGCGAGCG+AGG - chr5_4:5322121-5322140 None:intergenic 55.0%
TCGCTCGCTGTGAGTGAAGA+TGG + chr5_4:5322120-5322139 Msa0832270:exon 55.0%
CTCGCTGTGAGTGAAGATGG+CGG + chr5_4:5322123-5322142 Msa0832270:exon 55.0%
GGAGTCCTGAGAGTTAGAGG+AGG - chr5_4:5322181-5322200 None:intergenic 55.0%
GGTGTGGGAAACGCAAACCT+TGG - chr5_4:5322202-5322221 None:intergenic 55.0%
TCCCACACCTTCGTTGCGTA+TGG + chr5_4:5322213-5322232 Msa0832270:CDS 55.0%
! GCCATACGCAACGAAGGTGT+GGG - chr5_4:5322217-5322236 None:intergenic 55.0%
AGCCATACGCAACGAAGGTG+TGG - chr5_4:5322218-5322237 None:intergenic 55.0%
AGTGGAGCCATACGCAACGA+AGG - chr5_4:5322223-5322242 None:intergenic 55.0%
GCTTGGGTTCGGGAAATCTC+GGG - chr5_4:5322358-5322377 None:intergenic 55.0%
GGCTTGGGTTCGGGAAATCT+CGG - chr5_4:5322359-5322378 None:intergenic 55.0%
TGCTCTTGAGGGCTTGGGTT+CGG - chr5_4:5322369-5322388 None:intergenic 55.0%
!! CCCAAGCCCTCAAGAGCATT+TGG + chr5_4:5322371-5322390 Msa0832270:CDS 55.0%
CCCAAATGCTCTTGAGGGCT+TGG - chr5_4:5322375-5322394 None:intergenic 55.0%
GTGGGCCCAAATGCTCTTGA+GGG - chr5_4:5322380-5322399 None:intergenic 55.0%
TGTGGGCCCAAATGCTCTTG+AGG - chr5_4:5322381-5322400 None:intergenic 55.0%
TGAGCGGAGTGAGTAAGGGG+GGG + chr5_4:5322027-5322046 Msa0832270:five_prime_UTR 60.0%
! ATTTTGCCTCCGGTGGGTGG+AGG - chr5_4:5322277-5322296 None:intergenic 60.0%
! CGAATTTTGCCTCCGGTGGG+TGG - chr5_4:5322280-5322299 None:intergenic 60.0%
! CCGCGAATTTTGCCTCCGGT+GGG - chr5_4:5322283-5322302 None:intergenic 60.0%
CCCACCGGAGGCAAAATTCG+CGG + chr5_4:5322280-5322299 Msa0832270:CDS 60.0%
! ACCGCGAATTTTGCCTCCGG+TGG - chr5_4:5322284-5322303 None:intergenic 60.0%
GACGAGGTCTTGCATCTCGG+GGG - chr5_4:5322329-5322348 None:intergenic 60.0%
CGACGAGGTCTTGCATCTCG+GGG - chr5_4:5322330-5322349 None:intergenic 60.0%
CCGACGAGGTCTTGCATCTC+GGG - chr5_4:5322331-5322350 None:intergenic 60.0%
CCCGAGATGCAAGACCTCGT+CGG + chr5_4:5322328-5322347 Msa0832270:CDS 60.0%
GCCGACGAGGTCTTGCATCT+CGG - chr5_4:5322332-5322351 None:intergenic 60.0%
!! AAATCTCGGGTTGGCCGACG+AGG - chr5_4:5322345-5322364 None:intergenic 60.0%
GGGTTCGGGAAATCTCGGGT+TGG - chr5_4:5322354-5322373 None:intergenic 60.0%
GCTCTTGAGGGCTTGGGTTC+GGG - chr5_4:5322368-5322387 None:intergenic 60.0%
TGAGCGGAGTGAGTAAGGGG+GGG + chr5_4:5322027-5322046 Msa0832270:five_prime_UTR 60.0%
! ATTTTGCCTCCGGTGGGTGG+AGG - chr5_4:5322277-5322296 None:intergenic 60.0%
! CGAATTTTGCCTCCGGTGGG+TGG - chr5_4:5322280-5322299 None:intergenic 60.0%
! CCGCGAATTTTGCCTCCGGT+GGG - chr5_4:5322283-5322302 None:intergenic 60.0%
CCCACCGGAGGCAAAATTCG+CGG + chr5_4:5322280-5322299 Msa0832270:CDS 60.0%
! ACCGCGAATTTTGCCTCCGG+TGG - chr5_4:5322284-5322303 None:intergenic 60.0%
GACGAGGTCTTGCATCTCGG+GGG - chr5_4:5322329-5322348 None:intergenic 60.0%
CGACGAGGTCTTGCATCTCG+GGG - chr5_4:5322330-5322349 None:intergenic 60.0%
CCGACGAGGTCTTGCATCTC+GGG - chr5_4:5322331-5322350 None:intergenic 60.0%
CCCGAGATGCAAGACCTCGT+CGG + chr5_4:5322328-5322347 Msa0832270:CDS 60.0%
GCCGACGAGGTCTTGCATCT+CGG - chr5_4:5322332-5322351 None:intergenic 60.0%
!! AAATCTCGGGTTGGCCGACG+AGG - chr5_4:5322345-5322364 None:intergenic 60.0%
GGGTTCGGGAAATCTCGGGT+TGG - chr5_4:5322354-5322373 None:intergenic 60.0%
GCTCTTGAGGGCTTGGGTTC+GGG - chr5_4:5322368-5322387 None:intergenic 60.0%
GGTGGGTGGAGGCTGAGAGA+CGG - chr5_4:5322266-5322285 None:intergenic 65.0%
GTCTCTCAGCCTCCACCCAC+CGG + chr5_4:5322265-5322284 Msa0832270:CDS 65.0%
GGTGGGTGGAGGCTGAGAGA+CGG - chr5_4:5322266-5322285 None:intergenic 65.0%
GTCTCTCAGCCTCCACCCAC+CGG + chr5_4:5322265-5322284 Msa0832270:CDS 65.0%
GGGTGGAGGCTGAGAGACGG+TGG - chr5_4:5322263-5322282 None:intergenic 70.0%
TCTCAGCCTCCACCCACCGG+AGG + chr5_4:5322268-5322287 Msa0832270:CDS 70.0%
GGGTGGAGGCTGAGAGACGG+TGG - chr5_4:5322263-5322282 None:intergenic 70.0%
TCTCAGCCTCCACCCACCGG+AGG + chr5_4:5322268-5322287 Msa0832270:CDS 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 5322015 5323726 5322015 ID=Msa0832270;Name=Msa0832270
chr5_4 mRNA 5322015 5323726 5322015 ID=Msa0832270-mRNA-1;Parent=Msa0832270;Name=Msa0832270-mRNA-1;_AED=0.00;_eAED=0.00;_QI=124|1|1|1|1|1|2|320|133
chr5_4 exon 5322015 5322420 5322015 ID=Msa0832270-mRNA-1:exon:2247;Parent=Msa0832270-mRNA-1
chr5_4 exon 5323287 5323726 5323287 ID=Msa0832270-mRNA-1:exon:2248;Parent=Msa0832270-mRNA-1
chr5_4 five_prime_UTR 5322015 5322138 5322015 ID=Msa0832270-mRNA-1:five_prime_utr;Parent=Msa0832270-mRNA-1
chr5_4 CDS 5322139 5322420 5322139 ID=Msa0832270-mRNA-1:cds;Parent=Msa0832270-mRNA-1
chr5_4 CDS 5323287 5323406 5323287 ID=Msa0832270-mRNA-1:cds;Parent=Msa0832270-mRNA-1
chr5_4 three_prime_UTR 5323407 5323726 5323407 ID=Msa0832270-mRNA-1:three_prime_utr;Parent=Msa0832270-mRNA-1
Gene Sequence

>Msa0832270

ATGGCGGTTTCAATGGCTACCGGACTATTATTATCATCTCCTCCTCTAACTCTCAGGACTCCAAGGTTTGCGTTTCCCACACCTTCGTTGCGTATGGCTCCACTCCGAACAGTTACTTCTGCCACCGTCTCTCAGCCTCCACCCACCGGAGGCAAAATTCGCGGTATTATGAAACCTAAAAAAATCTCCCCCGAGATGCAAGACCTCGTCGGCCAACCCGAGATTTCCCGAACCCAAGCCCTCAAGAGCATTTGGGCCCACATTAAGGAACACAATCTTCAGAACCCTGAGAAAAAGAGGCTTATTCGCTGTGATGAGAAACTGAAGAAGGTATTTGCAGGGAGAGATGAAGTTGATATGCTTGAGATTGCTGGCTTGATTAGCCCTCACTTCCTTAATTGA

Protein sequence

>Msa0832270

MAVSMATGLLLSSPPLTLRTPRFAFPTPSLRMAPLRTVTSATVSQPPPTGGKIRGIMKPKKISPEMQDLVGQPEISRTQALKSIWAHIKEHNLQNPEKKRLIRCDEKLKKVFAGRDEVDMLEIAGLISPHFLN*