AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0302660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0302660 MtrunA17_Chr2g0328571 92.398 171 7 4 1 170 18 183 4.02e-80 235
Msa0302660 MtrunA17_Chr1g0185161 90.643 171 8 6 1 170 1 164 6.55e-77 226
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0302660 AT2G29180.1 41.772 158 75 5 20 163 5 159 4.60e-24 92.8

Find 45 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGCTCCTAGTCCTAAAATT+TGG 0.244297 2_3:-59458846 None:intergenic
GGCTTATCCGTTATCACTAT+TGG 0.245133 2_3:+59459247 Msa0302660:CDS
GCTTATCCGTTATCACTATT+GGG 0.260636 2_3:+59459248 Msa0302660:CDS
TCTGGTTGTAGTAGTGATAA+TGG 0.300412 2_3:-59459053 None:intergenic
GAAAGGAAGGTTGCAATCTT+TGG 0.300675 2_3:-59458956 None:intergenic
GAATACAACTGAGAATTTAC+TGG 0.312917 2_3:+59460608 Msa0302660:three_prime_UTR
GCTGTAGCAGCAACAGGATT+TGG 0.334339 2_3:-59459112 None:intergenic
TTCAAAGGAAGTCCAAACTA+TGG 0.343791 2_3:+59459089 Msa0302660:CDS
CATTGATGCTTCGGAGCAAT+TGG 0.360695 2_3:+59459156 Msa0302660:CDS
TACTCAACTTGCTAAATCAT+AGG 0.367002 2_3:-59460538 None:intergenic
CTGGTTGTAGTAGTGATAAT+GGG 0.369858 2_3:-59459052 None:intergenic
AACAGGATTTGGCCATAGTT+TGG 0.372494 2_3:-59459101 None:intergenic
AAAAGAAAAGAAAAGTAGTA+AGG 0.384781 2_3:+59460398 Msa0302660:CDS
AGGGCAGGACCTAAAGGATT+TGG 0.404020 2_3:+59460418 Msa0302660:CDS
ACTGAAGATGATGATTGATT+AGG 0.408774 2_3:+59460457 Msa0302660:exon
GAGAAAGATGAAGAAGTTGT+TGG 0.423658 2_3:-59459028 None:intergenic
TGCTACAGCCATTGATGCTT+CGG 0.431580 2_3:+59459147 Msa0302660:CDS
TCAACAGCTGTAGCAGCAAC+AGG 0.437132 2_3:-59459118 None:intergenic
CAATTGCTCCGAAGCATCAA+TGG 0.447559 2_3:-59459155 None:intergenic
AGAAGATGATGTTGAAAGGA+AGG 0.478894 2_3:-59458969 None:intergenic
TCATCAACTACCACTGATGA+TGG 0.480753 2_3:+59459181 Msa0302660:CDS
AAAGAAAAGAAAAGTAGTAA+GGG 0.491413 2_3:+59460399 Msa0302660:CDS
AAGAAGAAGATGATGTTGAA+AGG 0.496918 2_3:-59458973 None:intergenic
ACTCAACTTGCTAAATCATA+GGG 0.503216 2_3:-59460537 None:intergenic
GTAGTAAGGGCAGGACCTAA+AGG 0.510055 2_3:+59460412 Msa0302660:CDS
GGAGCATCCTCTCAATCCCT+TGG 0.515120 2_3:+59458862 Msa0302660:five_prime_UTR
CTTATCCGTTATCACTATTG+GGG 0.525510 2_3:+59459249 Msa0302660:CDS
CATCAACTACCACTGATGAT+GGG 0.525641 2_3:+59459182 Msa0302660:CDS
AAAAGAAAAGTAGTAAGGGC+AGG 0.536130 2_3:+59460403 Msa0302660:CDS
TACAACTTCTCAAACATCCA+AGG 0.540197 2_3:-59458879 None:intergenic
ATATACCCCAATAGTGATAA+CGG 0.550650 2_3:-59459254 None:intergenic
TTTCTTGACAAAGAGAGAGA+AGG 0.571247 2_3:+59460336 Msa0302660:CDS
CTAAATCATAGGGGAAAACA+AGG 0.571574 2_3:-59460527 None:intergenic
CAAACATCCAAGGGATTGAG+AGG 0.581083 2_3:-59458869 None:intergenic
TGCAGTGGCCATTGCTGACG+TGG 0.589554 2_3:-59458909 None:intergenic
AGAGTGGGCCACGTCAGCAA+TGG 0.607603 2_3:+59458901 Msa0302660:exon
ATCAACTACCACTGATGATG+GGG 0.608198 2_3:+59459183 Msa0302660:CDS
ACAACTTCTCAAACATCCAA+GGG 0.612691 2_3:-59458878 None:intergenic
AAGAGACACCCCATCATCAG+TGG 0.647668 2_3:-59459191 None:intergenic
TGTTTGAGAAGTTGTAGAGT+GGG 0.649491 2_3:+59458886 Msa0302660:five_prime_UTR
ATGTTTGAGAAGTTGTAGAG+TGG 0.651403 2_3:+59458885 Msa0302660:five_prime_UTR
CTCAACTTGCTAAATCATAG+GGG 0.661129 2_3:-59460536 None:intergenic
GAGAAAGAAGAAGCAGCTAG+CGG 0.687353 2_3:+59460367 Msa0302660:CDS
ATAATGAATAACAATGTGTG+TGG 0.699753 2_3:-59460635 None:intergenic
TGATGATGCAAATAATGCAG+TGG 0.718262 2_3:-59458924 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTCTATATTAATAAAAGAAT+TGG - chr2_3:59459314-59459333 None:intergenic 15.0%
!!! CAATTCTTTTATTAATATAG+AGG + chr2_3:59459312-59459331 Msa0302660:intron 15.0%
!!! AAATGATTATGAACTAATTT+TGG - chr2_3:59459646-59459665 None:intergenic 15.0%
!! TATTCAAAATGAACTAATTA+GGG - chr2_3:59459673-59459692 None:intergenic 15.0%
!!! AATAGAATTTTACAATATTG+AGG + chr2_3:59459689-59459708 Msa0302660:intron 15.0%
!!! TTTTTCGTTTTGTAATTTTA+TGG + chr2_3:59460043-59460062 Msa0302660:intron 15.0%
!!! TTTTATAAATGTAAATGACT+TGG + chr2_3:59460184-59460203 Msa0302660:intron 15.0%
!! CTCTATATTAATAAAAGAAT+TGG - chr2_3:59459314-59459333 None:intergenic 15.0%
!!! CAATTCTTTTATTAATATAG+AGG + chr2_3:59459312-59459331 Msa0302660:intron 15.0%
!!! AAATGATTATGAACTAATTT+TGG - chr2_3:59459646-59459665 None:intergenic 15.0%
!! TATTCAAAATGAACTAATTA+GGG - chr2_3:59459673-59459692 None:intergenic 15.0%
!!! AATAGAATTTTACAATATTG+AGG + chr2_3:59459689-59459708 Msa0302660:intron 15.0%
!!! TTTTTCGTTTTGTAATTTTA+TGG + chr2_3:59460043-59460062 Msa0302660:intron 15.0%
!!! TTTTATAAATGTAAATGACT+TGG + chr2_3:59460184-59460203 Msa0302660:intron 15.0%
!!! TTGAAAAATTATGGATTTTC+TGG - chr2_3:59459074-59459093 None:intergenic 20.0%
!!! GAAAATCCATAATTTTTCAA+AGG + chr2_3:59459074-59459093 Msa0302660:CDS 20.0%
!!! TTATTGACATTACATGTTTT+AGG + chr2_3:59459505-59459524 Msa0302660:intron 20.0%
!!! TATTGACATTACATGTTTTA+GGG + chr2_3:59459506-59459525 Msa0302660:intron 20.0%
!! CTAAATTGATTATGAAAGTT+AGG - chr2_3:59459587-59459606 None:intergenic 20.0%
!! CTATTCAAAATGAACTAATT+AGG - chr2_3:59459674-59459693 None:intergenic 20.0%
!!! TTTTTGTTTATAATAGTGAC+CGG - chr2_3:59459726-59459745 None:intergenic 20.0%
!!! TTGCGATTTTAATACATTAA+GGG - chr2_3:59460007-59460026 None:intergenic 20.0%
!!! TTTGCGATTTTAATACATTA+AGG - chr2_3:59460008-59460027 None:intergenic 20.0%
!! AAAAGAAAAGAAAAGTAGTA+AGG + chr2_3:59460398-59460417 Msa0302660:CDS 20.0%
!! AAAGAAAAGAAAAGTAGTAA+GGG + chr2_3:59460399-59460418 Msa0302660:CDS 20.0%
!!! TTGAAAAATTATGGATTTTC+TGG - chr2_3:59459074-59459093 None:intergenic 20.0%
!!! GAAAATCCATAATTTTTCAA+AGG + chr2_3:59459074-59459093 Msa0302660:CDS 20.0%
!!! TTATTGACATTACATGTTTT+AGG + chr2_3:59459505-59459524 Msa0302660:intron 20.0%
!!! TATTGACATTACATGTTTTA+GGG + chr2_3:59459506-59459525 Msa0302660:intron 20.0%
!! CTAAATTGATTATGAAAGTT+AGG - chr2_3:59459587-59459606 None:intergenic 20.0%
!! CTATTCAAAATGAACTAATT+AGG - chr2_3:59459674-59459693 None:intergenic 20.0%
!!! TTTTTGTTTATAATAGTGAC+CGG - chr2_3:59459726-59459745 None:intergenic 20.0%
!!! TTGCGATTTTAATACATTAA+GGG - chr2_3:59460007-59460026 None:intergenic 20.0%
!!! TTTGCGATTTTAATACATTA+AGG - chr2_3:59460008-59460027 None:intergenic 20.0%
!! AAAAGAAAAGAAAAGTAGTA+AGG + chr2_3:59460398-59460417 Msa0302660:CDS 20.0%
!! AAAGAAAAGAAAAGTAGTAA+GGG + chr2_3:59460399-59460418 Msa0302660:CDS 20.0%
! TTAGTGAAAATTATTTCCCT+TGG + chr2_3:59459422-59459441 Msa0302660:intron 25.0%
! CATTCATTAAATGATGTATG+TGG - chr2_3:59459762-59459781 None:intergenic 25.0%
! TAAGCAAAAATCAACATTCT+AGG - chr2_3:59459826-59459845 None:intergenic 25.0%
!! TTTTTGCTTATAATAGTGAC+CGG + chr2_3:59459836-59459855 Msa0302660:intron 25.0%
!! TTTTGATCTTTGAATATGTG+AGG - chr2_3:59460150-59460169 None:intergenic 25.0%
! TTACTTAGCATTAGTATTCA+GGG + chr2_3:59460258-59460277 Msa0302660:intron 25.0%
! ATAATGAATAACAATGTGTG+TGG - chr2_3:59460638-59460657 None:intergenic 25.0%
! TTAGTGAAAATTATTTCCCT+TGG + chr2_3:59459422-59459441 Msa0302660:intron 25.0%
! CATTCATTAAATGATGTATG+TGG - chr2_3:59459762-59459781 None:intergenic 25.0%
! TAAGCAAAAATCAACATTCT+AGG - chr2_3:59459826-59459845 None:intergenic 25.0%
!! TTTTTGCTTATAATAGTGAC+CGG + chr2_3:59459836-59459855 Msa0302660:intron 25.0%
!! TTTTGATCTTTGAATATGTG+AGG - chr2_3:59460150-59460169 None:intergenic 25.0%
! TTACTTAGCATTAGTATTCA+GGG + chr2_3:59460258-59460277 Msa0302660:intron 25.0%
! ATAATGAATAACAATGTGTG+TGG - chr2_3:59460638-59460657 None:intergenic 25.0%
AAGAAGAAGATGATGTTGAA+AGG - chr2_3:59458976-59458995 None:intergenic 30.0%
AGTAAAAACGTGTGTTGAAA+TGG - chr2_3:59459003-59459022 None:intergenic 30.0%
! GGACTTCCTTTGAAAAATTA+TGG - chr2_3:59459083-59459102 None:intergenic 30.0%
! CTTTTCTTCATTGCTTTCAT+TGG + chr2_3:59459226-59459245 Msa0302660:CDS 30.0%
ATATACCCCAATAGTGATAA+CGG - chr2_3:59459257-59459276 None:intergenic 30.0%
CTAGTTTATACTTTGTAGTG+TGG - chr2_3:59459480-59459499 None:intergenic 30.0%
! TTTAAAGCAAACAGCCATTT+AGG + chr2_3:59459949-59459968 Msa0302660:intron 30.0%
CACATATTTAGAGACCTAAA+TGG - chr2_3:59459966-59459985 None:intergenic 30.0%
TTTAGGTCTCTAAATATGTG+AGG + chr2_3:59459966-59459985 Msa0302660:intron 30.0%
! CCTCCTATCTAAAACTATTT+CGG + chr2_3:59460233-59460252 Msa0302660:intron 30.0%
!!! ACACCGAAATAGTTTTAGAT+AGG - chr2_3:59460239-59460258 None:intergenic 30.0%
GTTACTTAGCATTAGTATTC+AGG + chr2_3:59460257-59460276 Msa0302660:intron 30.0%
!! TTTTTGTTTGTTTGTGTTGC+AGG + chr2_3:59460291-59460310 Msa0302660:intron 30.0%
! ATCTTTTGACCAAATCCTTT+AGG - chr2_3:59460430-59460449 None:intergenic 30.0%
ACTGAAGATGATGATTGATT+AGG + chr2_3:59460457-59460476 Msa0302660:exon 30.0%
!! ACTCAACTTGCTAAATCATA+GGG - chr2_3:59460540-59460559 None:intergenic 30.0%
!! TACTCAACTTGCTAAATCAT+AGG - chr2_3:59460541-59460560 None:intergenic 30.0%
!! GTTTTAACAAAGAGAAGCAA+GGG + chr2_3:59460572-59460591 Msa0302660:three_prime_UTR 30.0%
GAATACAACTGAGAATTTAC+TGG + chr2_3:59460608-59460627 Msa0302660:three_prime_UTR 30.0%
AAGAAGAAGATGATGTTGAA+AGG - chr2_3:59458976-59458995 None:intergenic 30.0%
AGTAAAAACGTGTGTTGAAA+TGG - chr2_3:59459003-59459022 None:intergenic 30.0%
! GGACTTCCTTTGAAAAATTA+TGG - chr2_3:59459083-59459102 None:intergenic 30.0%
! CTTTTCTTCATTGCTTTCAT+TGG + chr2_3:59459226-59459245 Msa0302660:CDS 30.0%
ATATACCCCAATAGTGATAA+CGG - chr2_3:59459257-59459276 None:intergenic 30.0%
CTAGTTTATACTTTGTAGTG+TGG - chr2_3:59459480-59459499 None:intergenic 30.0%
! TTTAAAGCAAACAGCCATTT+AGG + chr2_3:59459949-59459968 Msa0302660:intron 30.0%
CACATATTTAGAGACCTAAA+TGG - chr2_3:59459966-59459985 None:intergenic 30.0%
TTTAGGTCTCTAAATATGTG+AGG + chr2_3:59459966-59459985 Msa0302660:intron 30.0%
! CCTCCTATCTAAAACTATTT+CGG + chr2_3:59460233-59460252 Msa0302660:intron 30.0%
!!! ACACCGAAATAGTTTTAGAT+AGG - chr2_3:59460239-59460258 None:intergenic 30.0%
GTTACTTAGCATTAGTATTC+AGG + chr2_3:59460257-59460276 Msa0302660:intron 30.0%
!! TTTTTGTTTGTTTGTGTTGC+AGG + chr2_3:59460291-59460310 Msa0302660:intron 30.0%
! ATCTTTTGACCAAATCCTTT+AGG - chr2_3:59460430-59460449 None:intergenic 30.0%
ACTGAAGATGATGATTGATT+AGG + chr2_3:59460457-59460476 Msa0302660:exon 30.0%
!! ACTCAACTTGCTAAATCATA+GGG - chr2_3:59460540-59460559 None:intergenic 30.0%
!! TACTCAACTTGCTAAATCAT+AGG - chr2_3:59460541-59460560 None:intergenic 30.0%
!! GTTTTAACAAAGAGAAGCAA+GGG + chr2_3:59460572-59460591 Msa0302660:three_prime_UTR 30.0%
GAATACAACTGAGAATTTAC+TGG + chr2_3:59460608-59460627 Msa0302660:three_prime_UTR 30.0%
ATGCTCCTAGTCCTAAAATT+TGG - chr2_3:59458849-59458868 None:intergenic 35.0%
ACAACTTCTCAAACATCCAA+GGG - chr2_3:59458881-59458900 None:intergenic 35.0%
TACAACTTCTCAAACATCCA+AGG - chr2_3:59458882-59458901 None:intergenic 35.0%
ATGTTTGAGAAGTTGTAGAG+TGG + chr2_3:59458885-59458904 Msa0302660:five_prime_UTR 35.0%
TGTTTGAGAAGTTGTAGAGT+GGG + chr2_3:59458886-59458905 Msa0302660:five_prime_UTR 35.0%
! TGATGATGCAAATAATGCAG+TGG - chr2_3:59458927-59458946 None:intergenic 35.0%
AGAAGATGATGTTGAAAGGA+AGG - chr2_3:59458972-59458991 None:intergenic 35.0%
GAGAAAGATGAAGAAGTTGT+TGG - chr2_3:59459031-59459050 None:intergenic 35.0%
CTGGTTGTAGTAGTGATAAT+GGG - chr2_3:59459055-59459074 None:intergenic 35.0%
TCTGGTTGTAGTAGTGATAA+TGG - chr2_3:59459056-59459075 None:intergenic 35.0%
TTCAAAGGAAGTCCAAACTA+TGG + chr2_3:59459089-59459108 Msa0302660:CDS 35.0%
GCTTATCCGTTATCACTATT+GGG + chr2_3:59459248-59459267 Msa0302660:CDS 35.0%
CTTATCCGTTATCACTATTG+GGG + chr2_3:59459249-59459268 Msa0302660:CDS 35.0%
TTGAGACATGCTTGCAATTT+CGG - chr2_3:59459349-59459368 None:intergenic 35.0%
TTCCATGTCATATTGTCCAA+GGG - chr2_3:59459441-59459460 None:intergenic 35.0%
ATTCCATGTCATATTGTCCA+AGG - chr2_3:59459442-59459461 None:intergenic 35.0%
TGTTTATAATAGTGACCGGA+GGG - chr2_3:59459722-59459741 None:intergenic 35.0%
TTGTTTATAATAGTGACCGG+AGG - chr2_3:59459723-59459742 None:intergenic 35.0%
!!! CCGAAATAGTTTTAGATAGG+AGG - chr2_3:59460236-59460255 None:intergenic 35.0%
TTTCTTGACAAAGAGAGAGA+AGG + chr2_3:59460336-59460355 Msa0302660:CDS 35.0%
AAAAGAAAAGTAGTAAGGGC+AGG + chr2_3:59460403-59460422 Msa0302660:CDS 35.0%
CTAAATCATAGGGGAAAACA+AGG - chr2_3:59460530-59460549 None:intergenic 35.0%
!! CTCAACTTGCTAAATCATAG+GGG - chr2_3:59460539-59460558 None:intergenic 35.0%
!! CGTTTTAACAAAGAGAAGCA+AGG + chr2_3:59460571-59460590 Msa0302660:three_prime_UTR 35.0%
ATGCTCCTAGTCCTAAAATT+TGG - chr2_3:59458849-59458868 None:intergenic 35.0%
ACAACTTCTCAAACATCCAA+GGG - chr2_3:59458881-59458900 None:intergenic 35.0%
TACAACTTCTCAAACATCCA+AGG - chr2_3:59458882-59458901 None:intergenic 35.0%
ATGTTTGAGAAGTTGTAGAG+TGG + chr2_3:59458885-59458904 Msa0302660:five_prime_UTR 35.0%
TGTTTGAGAAGTTGTAGAGT+GGG + chr2_3:59458886-59458905 Msa0302660:five_prime_UTR 35.0%
! TGATGATGCAAATAATGCAG+TGG - chr2_3:59458927-59458946 None:intergenic 35.0%
AGAAGATGATGTTGAAAGGA+AGG - chr2_3:59458972-59458991 None:intergenic 35.0%
GAGAAAGATGAAGAAGTTGT+TGG - chr2_3:59459031-59459050 None:intergenic 35.0%
CTGGTTGTAGTAGTGATAAT+GGG - chr2_3:59459055-59459074 None:intergenic 35.0%
TCTGGTTGTAGTAGTGATAA+TGG - chr2_3:59459056-59459075 None:intergenic 35.0%
TTCAAAGGAAGTCCAAACTA+TGG + chr2_3:59459089-59459108 Msa0302660:CDS 35.0%
GCTTATCCGTTATCACTATT+GGG + chr2_3:59459248-59459267 Msa0302660:CDS 35.0%
CTTATCCGTTATCACTATTG+GGG + chr2_3:59459249-59459268 Msa0302660:CDS 35.0%
TTGAGACATGCTTGCAATTT+CGG - chr2_3:59459349-59459368 None:intergenic 35.0%
TTCCATGTCATATTGTCCAA+GGG - chr2_3:59459441-59459460 None:intergenic 35.0%
ATTCCATGTCATATTGTCCA+AGG - chr2_3:59459442-59459461 None:intergenic 35.0%
TGTTTATAATAGTGACCGGA+GGG - chr2_3:59459722-59459741 None:intergenic 35.0%
TTGTTTATAATAGTGACCGG+AGG - chr2_3:59459723-59459742 None:intergenic 35.0%
!!! CCGAAATAGTTTTAGATAGG+AGG - chr2_3:59460236-59460255 None:intergenic 35.0%
TTTCTTGACAAAGAGAGAGA+AGG + chr2_3:59460336-59460355 Msa0302660:CDS 35.0%
AAAAGAAAAGTAGTAAGGGC+AGG + chr2_3:59460403-59460422 Msa0302660:CDS 35.0%
CTAAATCATAGGGGAAAACA+AGG - chr2_3:59460530-59460549 None:intergenic 35.0%
!! CTCAACTTGCTAAATCATAG+GGG - chr2_3:59460539-59460558 None:intergenic 35.0%
!! CGTTTTAACAAAGAGAAGCA+AGG + chr2_3:59460571-59460590 Msa0302660:three_prime_UTR 35.0%
GAAAGGAAGGTTGCAATCTT+TGG - chr2_3:59458959-59458978 None:intergenic 40.0%
AACAGGATTTGGCCATAGTT+TGG - chr2_3:59459104-59459123 None:intergenic 40.0%
TCATCAACTACCACTGATGA+TGG + chr2_3:59459181-59459200 Msa0302660:CDS 40.0%
CATCAACTACCACTGATGAT+GGG + chr2_3:59459182-59459201 Msa0302660:CDS 40.0%
! ATCAACTACCACTGATGATG+GGG + chr2_3:59459183-59459202 Msa0302660:CDS 40.0%
GGCTTATCCGTTATCACTAT+TGG + chr2_3:59459247-59459266 Msa0302660:CDS 40.0%
TTCCCTTGGACAATATGACA+TGG + chr2_3:59459436-59459455 Msa0302660:intron 40.0%
TTGCTTATAATAGTGACCGG+AGG + chr2_3:59459839-59459858 Msa0302660:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG + chr2_3:59459840-59459859 Msa0302660:intron 40.0%
GAATTGACATATACACCCTC+CGG - chr2_3:59459858-59459877 None:intergenic 40.0%
GGCAAATGGTCACGATTTAA+AGG + chr2_3:59459899-59459918 Msa0302660:intron 40.0%
AATCGCAAACACATCTCTAG+TGG + chr2_3:59460019-59460038 Msa0302660:intron 40.0%
CTTAGCATTAGTATTCAGGG+AGG + chr2_3:59460261-59460280 Msa0302660:intron 40.0%
GAAAGGAAGGTTGCAATCTT+TGG - chr2_3:59458959-59458978 None:intergenic 40.0%
AACAGGATTTGGCCATAGTT+TGG - chr2_3:59459104-59459123 None:intergenic 40.0%
TCATCAACTACCACTGATGA+TGG + chr2_3:59459181-59459200 Msa0302660:CDS 40.0%
CATCAACTACCACTGATGAT+GGG + chr2_3:59459182-59459201 Msa0302660:CDS 40.0%
! ATCAACTACCACTGATGATG+GGG + chr2_3:59459183-59459202 Msa0302660:CDS 40.0%
GGCTTATCCGTTATCACTAT+TGG + chr2_3:59459247-59459266 Msa0302660:CDS 40.0%
TTCCCTTGGACAATATGACA+TGG + chr2_3:59459436-59459455 Msa0302660:intron 40.0%
TTGCTTATAATAGTGACCGG+AGG + chr2_3:59459839-59459858 Msa0302660:intron 40.0%
TGCTTATAATAGTGACCGGA+GGG + chr2_3:59459840-59459859 Msa0302660:intron 40.0%
GAATTGACATATACACCCTC+CGG - chr2_3:59459858-59459877 None:intergenic 40.0%
GGCAAATGGTCACGATTTAA+AGG + chr2_3:59459899-59459918 Msa0302660:intron 40.0%
AATCGCAAACACATCTCTAG+TGG + chr2_3:59460019-59460038 Msa0302660:intron 40.0%
CTTAGCATTAGTATTCAGGG+AGG + chr2_3:59460261-59460280 Msa0302660:intron 40.0%
CAAACATCCAAGGGATTGAG+AGG - chr2_3:59458872-59458891 None:intergenic 45.0%
TGCTACAGCCATTGATGCTT+CGG + chr2_3:59459147-59459166 Msa0302660:CDS 45.0%
! CAATTGCTCCGAAGCATCAA+TGG - chr2_3:59459158-59459177 None:intergenic 45.0%
CATTGATGCTTCGGAGCAAT+TGG + chr2_3:59459156-59459175 Msa0302660:CDS 45.0%
CACATGCGGTCAACTTACTA+GGG - chr2_3:59459611-59459630 None:intergenic 45.0%
ACACATGCGGTCAACTTACT+AGG - chr2_3:59459612-59459631 None:intergenic 45.0%
! AGTAAGTTGACCGCATGTGT+TGG + chr2_3:59459612-59459631 Msa0302660:intron 45.0%
TATTGAGGATGTACACCCTC+CGG + chr2_3:59459704-59459723 Msa0302660:intron 45.0%
! GCCAAAACGAGTGACTAGTT+TGG + chr2_3:59459878-59459897 Msa0302660:intron 45.0%
! GCCAAACTAGTCACTCGTTT+TGG - chr2_3:59459882-59459901 None:intergenic 45.0%
!! CGAGTGACTAGTTTGGCAAA+TGG + chr2_3:59459885-59459904 Msa0302660:intron 45.0%
GAGAAAGAAGAAGCAGCTAG+CGG + chr2_3:59460367-59460386 Msa0302660:CDS 45.0%
CAAACATCCAAGGGATTGAG+AGG - chr2_3:59458872-59458891 None:intergenic 45.0%
TGCTACAGCCATTGATGCTT+CGG + chr2_3:59459147-59459166 Msa0302660:CDS 45.0%
! CAATTGCTCCGAAGCATCAA+TGG - chr2_3:59459158-59459177 None:intergenic 45.0%
CATTGATGCTTCGGAGCAAT+TGG + chr2_3:59459156-59459175 Msa0302660:CDS 45.0%
CACATGCGGTCAACTTACTA+GGG - chr2_3:59459611-59459630 None:intergenic 45.0%
ACACATGCGGTCAACTTACT+AGG - chr2_3:59459612-59459631 None:intergenic 45.0%
! AGTAAGTTGACCGCATGTGT+TGG + chr2_3:59459612-59459631 Msa0302660:intron 45.0%
TATTGAGGATGTACACCCTC+CGG + chr2_3:59459704-59459723 Msa0302660:intron 45.0%
! GCCAAAACGAGTGACTAGTT+TGG + chr2_3:59459878-59459897 Msa0302660:intron 45.0%
! GCCAAACTAGTCACTCGTTT+TGG - chr2_3:59459882-59459901 None:intergenic 45.0%
!! CGAGTGACTAGTTTGGCAAA+TGG + chr2_3:59459885-59459904 Msa0302660:intron 45.0%
GAGAAAGAAGAAGCAGCTAG+CGG + chr2_3:59460367-59460386 Msa0302660:CDS 45.0%
GCTGTAGCAGCAACAGGATT+TGG - chr2_3:59459115-59459134 None:intergenic 50.0%
TCAACAGCTGTAGCAGCAAC+AGG - chr2_3:59459121-59459140 None:intergenic 50.0%
AAGAGACACCCCATCATCAG+TGG - chr2_3:59459194-59459213 None:intergenic 50.0%
GGACGTTGATCCAACACATG+CGG - chr2_3:59459625-59459644 None:intergenic 50.0%
GTAGTAAGGGCAGGACCTAA+AGG + chr2_3:59460412-59460431 Msa0302660:CDS 50.0%
AGGGCAGGACCTAAAGGATT+TGG + chr2_3:59460418-59460437 Msa0302660:CDS 50.0%
GCTGTAGCAGCAACAGGATT+TGG - chr2_3:59459115-59459134 None:intergenic 50.0%
TCAACAGCTGTAGCAGCAAC+AGG - chr2_3:59459121-59459140 None:intergenic 50.0%
AAGAGACACCCCATCATCAG+TGG - chr2_3:59459194-59459213 None:intergenic 50.0%
GGACGTTGATCCAACACATG+CGG - chr2_3:59459625-59459644 None:intergenic 50.0%
GTAGTAAGGGCAGGACCTAA+AGG + chr2_3:59460412-59460431 Msa0302660:CDS 50.0%
AGGGCAGGACCTAAAGGATT+TGG + chr2_3:59460418-59460437 Msa0302660:CDS 50.0%
! GGAGCATCCTCTCAATCCCT+TGG + chr2_3:59458862-59458881 Msa0302660:five_prime_UTR 55.0%
! GGAGCATCCTCTCAATCCCT+TGG + chr2_3:59458862-59458881 Msa0302660:five_prime_UTR 55.0%
AGAGTGGGCCACGTCAGCAA+TGG + chr2_3:59458901-59458920 Msa0302660:exon 60.0%
TGCAGTGGCCATTGCTGACG+TGG - chr2_3:59458912-59458931 None:intergenic 60.0%
AGAGTGGGCCACGTCAGCAA+TGG + chr2_3:59458901-59458920 Msa0302660:exon 60.0%
TGCAGTGGCCATTGCTGACG+TGG - chr2_3:59458912-59458931 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 59458842 59460694 59458842 ID=Msa0302660;Name=Msa0302660
chr2_3 mRNA 59458842 59460694 59458842 ID=Msa0302660-mRNA-1;Parent=Msa0302660;Name=Msa0302660-mRNA-1;_AED=0.04;_eAED=0.04;_QI=78|1|1|1|1|1|2|220|170
chr2_3 exon 59458842 59459270 59458842 ID=Msa0302660-mRNA-1:exon:19270;Parent=Msa0302660-mRNA-1
chr2_3 exon 59460313 59460694 59460313 ID=Msa0302660-mRNA-1:exon:19271;Parent=Msa0302660-mRNA-1
chr2_3 five_prime_UTR 59458842 59458919 59458842 ID=Msa0302660-mRNA-1:five_prime_utr;Parent=Msa0302660-mRNA-1
chr2_3 CDS 59458920 59459270 59458920 ID=Msa0302660-mRNA-1:cds;Parent=Msa0302660-mRNA-1
chr2_3 CDS 59460313 59460474 59460313 ID=Msa0302660-mRNA-1:cds;Parent=Msa0302660-mRNA-1
chr2_3 three_prime_UTR 59460475 59460694 59460475 ID=Msa0302660-mRNA-1:three_prime_utr;Parent=Msa0302660-mRNA-1
Gene Sequence

>Msa0302660

ATGGCCACTGCATTATTTGCATCATCATCATCATCTCCAAAGATTGCAACCTTCCTTTCAACATCATCTTCTTCTTCTTTCCATTTCAACACACGTTTTTACTCACTTCCAACAACTTCTTCATCTTTCTCTCCCATTATCACTACTACAACCAGAAAATCCATAATTTTTCAAAGGAAGTCCAAACTATGGCCAAATCCTGTTGCTGCTACAGCTGTTGAAGATGCTGCTACAGCCATTGATGCTTCGGAGCAATTGGTTTCATCAACTACCACTGATGATGGGGTGTCTCTTATCGTATCAGCTCTTTTCTTCATTGCTTTCATTGGCTTATCCGTTATCACTATTGGGGTTATCTATTTAGCAGTAACAGATTTCTTGACAAAGAGAGAGAAGGAAAAATTTGAGAAAGAAGAAGCAGCTAGCGGAAAGAAGAAAAAGAAAAGAAAAGTAGTAAGGGCAGGACCTAAAGGATTTGGTCAAAAGATTGTTCAAACTGAAGATGATGATTGA

Protein sequence

>Msa0302660

MATALFASSSSSPKIATFLSTSSSSSFHFNTRFYSLPTTSSSFSPIITTTTRKSIIFQRKSKLWPNPVAATAVEDAATAIDASEQLVSSTTTDDGVSLIVSALFFIAFIGLSVITIGVIYLAVTDFLTKREKEKFEKEEAASGKKKKKRKVVRAGPKGFGQKIVQTEDDD*