AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0397000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0397000 MtrunA17_Chr3g0084331 97.765 179 4 0 1 179 1 179 3.28e-130 362
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0397000 AT1G50900.1 81.538 130 23 1 51 179 46 175 1.73e-76 226

Find 47 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGCAGTACTTCAACTATA+TGG 0.189978 3_2:+15961360 Msa0397000:intron
GCTGAAGGTGCTGGTATTTA+TGG 0.229748 3_2:+15960247 Msa0397000:CDS
TATGCAGCACTGACACTTAA+AGG 0.234259 3_2:+15961793 Msa0397000:three_prime_UTR
AGAAACTTGTGAAGTGATTA+AGG 0.234288 3_2:-15960080 None:intergenic
TCAAGCTTCACCTCTAAATT+TGG 0.237887 3_2:+15960166 Msa0397000:CDS
ATTTCATATGATTTGGCCTT+TGG 0.261082 3_2:+15961693 Msa0397000:three_prime_UTR
CTATGTTATTTCATATGATT+TGG 0.267320 3_2:+15961686 Msa0397000:three_prime_UTR
TCTAAATTTGGACCCTCTAA+TGG 0.274812 3_2:+15960178 Msa0397000:CDS
CCACAAACTTGTCTTCTTCT+CGG 0.286283 3_2:+15960104 Msa0397000:CDS
TTGTCTTCTTCTCGGTTTCT+TGG 0.293903 3_2:+15960112 Msa0397000:CDS
TTCACATGCTGGTTCAAGTT+TGG 0.342748 3_2:+15960208 Msa0397000:CDS
TGAGGGAACATATGATAAAA+TGG 0.343607 3_2:+15961396 Msa0397000:CDS
TTGCAGTACTTCAACTATAT+GGG 0.353317 3_2:+15961361 Msa0397000:intron
GTAGTTGAAATGGCAAATAA+TGG 0.406753 3_2:-15961633 None:intergenic
GGATTTAGAATTTGAAATGA+TGG 0.407382 3_2:-15960059 None:intergenic
TGATAGAGATGATGTTGAAC+AGG 0.411754 3_2:+15960291 Msa0397000:CDS
AAACAGCTATGTAGTTGAAA+TGG 0.418113 3_2:-15961643 None:intergenic
CTAAATTTGGACCCTCTAAT+GGG 0.424402 3_2:+15960179 Msa0397000:CDS
TGTGAATCTTGACCCATTAG+AGG 0.437901 3_2:-15960191 None:intergenic
ATTAGAGGGTCCAAATTTAG+AGG 0.451507 3_2:-15960176 None:intergenic
ATGGGGATGCTTGCCGTTGA+GGG 0.451718 3_2:+15961379 Msa0397000:CDS
GGTATTAGAGTTAAGAGTGT+TGG 0.475847 3_2:+15960133 Msa0397000:CDS
TATCAAAATCATCACGAGAC+TGG 0.487504 3_2:-15960273 None:intergenic
CCGAGAAGAAGACAAGTTTG+TGG 0.501506 3_2:-15960104 None:intergenic
TAGAATTTGAAATGATGGGT+TGG 0.518105 3_2:-15960054 None:intergenic
TATGGGGATGCTTGCCGTTG+AGG 0.520774 3_2:+15961378 Msa0397000:CDS
AGGTGACTTGCCGAAAATTG+AGG 0.540400 3_2:+15961480 Msa0397000:CDS
ATGGGTCAAGATTCACATGC+TGG 0.548494 3_2:+15960197 Msa0397000:CDS
TGCAGTACTTCAACTATATG+GGG 0.549121 3_2:+15961362 Msa0397000:intron
TTTATCATATGTTCCCTCAA+CGG 0.549605 3_2:-15961392 None:intergenic
GATTTAGAATTTGAAATGAT+GGG 0.552146 3_2:-15960058 None:intergenic
ATTGAGGAACTCTTGAAAGC+AGG 0.563985 3_2:+15961496 Msa0397000:CDS
GGTGTTGATGCTGAAGGTGC+TGG 0.568178 3_2:+15960238 Msa0397000:CDS
CGCAGATGGACGGACAGCGT+TGG 0.577773 3_2:+15961540 Msa0397000:CDS
AACAACAGTAGAATGTCCAC+AGG 0.585605 3_2:-15961445 None:intergenic
CATGCTAATAATGAATCCAA+AGG 0.599508 3_2:-15961709 None:intergenic
ATGTAAAAGACGCAGATGGA+CGG 0.600271 3_2:+15961530 Msa0397000:CDS
TATGATGTAAAAGACGCAGA+TGG 0.606140 3_2:+15961526 Msa0397000:CDS
GTGAATCTTGACCCATTAGA+GGG 0.615376 3_2:-15960190 None:intergenic
CTGTTGTTAGCTGCATCAGA+AGG 0.617450 3_2:+15961460 Msa0397000:CDS
TTAGAGTTAAGAGTGTTGGA+TGG 0.638432 3_2:+15960137 Msa0397000:CDS
AACACAACACAACACAACAA+TGG 0.639555 3_2:+15960009 Msa0397000:exon
TATATCTATGATAGTCACAA+GGG 0.643596 3_2:-15961754 None:intergenic
GTATATCTATGATAGTCACA+AGG 0.656418 3_2:-15961755 None:intergenic
GGGAACATATGATAAAATGG+AGG 0.672409 3_2:+15961399 Msa0397000:CDS
GTGTTTGAAACTGACACATG+TGG 0.753712 3_2:+15961841 Msa0397000:three_prime_UTR
ACAACAGTAGAATGTCCACA+GGG 0.763235 3_2:-15961444 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAATGATATATTTGTTT+TGG + chr3_2:15960391-15960410 Msa0397000:intron 10.0%
!!! TTTTAATGATATATTTGTTT+TGG + chr3_2:15960391-15960410 Msa0397000:intron 10.0%
!!! AACAAAGTTTATTTTTTGAA+AGG + chr3_2:15960325-15960344 Msa0397000:intron 15.0%
!!! TAAAATCTATTTGTTTTACT+AGG - chr3_2:15960555-15960574 None:intergenic 15.0%
!!! ATTTTTTAAAAAACCATTTG+AGG - chr3_2:15960697-15960716 None:intergenic 15.0%
!! ATAAAGATGAACATAAAATT+TGG + chr3_2:15961145-15961164 Msa0397000:intron 15.0%
!! TAAAGATGAACATAAAATTT+GGG + chr3_2:15961146-15961165 Msa0397000:intron 15.0%
!!! AACAAAGTTTATTTTTTGAA+AGG + chr3_2:15960325-15960344 Msa0397000:intron 15.0%
!!! TAAAATCTATTTGTTTTACT+AGG - chr3_2:15960555-15960574 None:intergenic 15.0%
!!! ATTTTTTAAAAAACCATTTG+AGG - chr3_2:15960697-15960716 None:intergenic 15.0%
!! ATAAAGATGAACATAAAATT+TGG + chr3_2:15961145-15961164 Msa0397000:intron 15.0%
!! TAAAGATGAACATAAAATTT+GGG + chr3_2:15961146-15961165 Msa0397000:intron 15.0%
!!! GATTTAGAATTTGAAATGAT+GGG - chr3_2:15960061-15960080 None:intergenic 20.0%
!!! TTTTATAACTGCATAGAAAT+TGG + chr3_2:15961054-15961073 Msa0397000:intron 20.0%
!! TTTATAACTGCATAGAAATT+GGG + chr3_2:15961055-15961074 Msa0397000:intron 20.0%
!!! ATTTTCCTGTTTAAAAATGA+AGG - chr3_2:15961241-15961260 None:intergenic 20.0%
!!! CTATGTTATTTCATATGATT+TGG + chr3_2:15961686-15961705 Msa0397000:three_prime_UTR 20.0%
!!! GATTTAGAATTTGAAATGAT+GGG - chr3_2:15960061-15960080 None:intergenic 20.0%
!!! TTTTATAACTGCATAGAAAT+TGG + chr3_2:15961054-15961073 Msa0397000:intron 20.0%
!! TTTATAACTGCATAGAAATT+GGG + chr3_2:15961055-15961074 Msa0397000:intron 20.0%
!!! ATTTTCCTGTTTAAAAATGA+AGG - chr3_2:15961241-15961260 None:intergenic 20.0%
!!! CTATGTTATTTCATATGATT+TGG + chr3_2:15961686-15961705 Msa0397000:three_prime_UTR 20.0%
!! GGATTTAGAATTTGAAATGA+TGG - chr3_2:15960062-15960081 None:intergenic 25.0%
! TATAAAATGCAGTCACAAAA+TGG - chr3_2:15960439-15960458 None:intergenic 25.0%
! TGTGAATGAAGCATAAAAAA+GGG - chr3_2:15960500-15960519 None:intergenic 25.0%
! ATGTGAATGAAGCATAAAAA+AGG - chr3_2:15960501-15960520 None:intergenic 25.0%
!! AGATTTTATCTATGAGAGAT+TGG + chr3_2:15960567-15960586 Msa0397000:intron 25.0%
! GGAAATTATCTCCTAATTTA+AGG - chr3_2:15960669-15960688 None:intergenic 25.0%
! TAAAAAACCATTTGAGGAAA+GGG - chr3_2:15960691-15960710 None:intergenic 25.0%
! TTAAAAAACCATTTGAGGAA+AGG - chr3_2:15960692-15960711 None:intergenic 25.0%
! TGAGTTTACAATATCTAGTA+AGG + chr3_2:15960809-15960828 Msa0397000:intron 25.0%
!!! TTTTTTAACTTGTGTAACCA+TGG + chr3_2:15960860-15960879 Msa0397000:intron 25.0%
! GAAAGTGAAAATGTAATTGA+AGG + chr3_2:15961077-15961096 Msa0397000:intron 25.0%
! TATATCTATGATAGTCACAA+GGG - chr3_2:15961757-15961776 None:intergenic 25.0%
!! GGATTTAGAATTTGAAATGA+TGG - chr3_2:15960062-15960081 None:intergenic 25.0%
! TATAAAATGCAGTCACAAAA+TGG - chr3_2:15960439-15960458 None:intergenic 25.0%
! TGTGAATGAAGCATAAAAAA+GGG - chr3_2:15960500-15960519 None:intergenic 25.0%
! ATGTGAATGAAGCATAAAAA+AGG - chr3_2:15960501-15960520 None:intergenic 25.0%
!! AGATTTTATCTATGAGAGAT+TGG + chr3_2:15960567-15960586 Msa0397000:intron 25.0%
! GGAAATTATCTCCTAATTTA+AGG - chr3_2:15960669-15960688 None:intergenic 25.0%
! TAAAAAACCATTTGAGGAAA+GGG - chr3_2:15960691-15960710 None:intergenic 25.0%
! TTAAAAAACCATTTGAGGAA+AGG - chr3_2:15960692-15960711 None:intergenic 25.0%
! TGAGTTTACAATATCTAGTA+AGG + chr3_2:15960809-15960828 Msa0397000:intron 25.0%
!!! TTTTTTAACTTGTGTAACCA+TGG + chr3_2:15960860-15960879 Msa0397000:intron 25.0%
! GAAAGTGAAAATGTAATTGA+AGG + chr3_2:15961077-15961096 Msa0397000:intron 25.0%
! TATATCTATGATAGTCACAA+GGG - chr3_2:15961757-15961776 None:intergenic 25.0%
!! TAGAATTTGAAATGATGGGT+TGG - chr3_2:15960057-15960076 None:intergenic 30.0%
AGAAACTTGTGAAGTGATTA+AGG - chr3_2:15960083-15960102 None:intergenic 30.0%
! TGGTTCAAGTTTGGTAAAAA+TGG + chr3_2:15960217-15960236 Msa0397000:CDS 30.0%
GTGAATGAAGCATAAAAAAG+GGG - chr3_2:15960499-15960518 None:intergenic 30.0%
ACACTTACTAATTGTCTCTA+AGG - chr3_2:15960644-15960663 None:intergenic 30.0%
AGTAAGTGTCACCTTAAATT+AGG + chr3_2:15960655-15960674 Msa0397000:intron 30.0%
AAAAAACCATTTGAGGAAAG+GGG - chr3_2:15960690-15960709 None:intergenic 30.0%
!! CATAAGTTTGCTTTTGATTC+TGG + chr3_2:15960748-15960767 Msa0397000:intron 30.0%
!! TCTGTCCTTCATTTTTAAAC+AGG + chr3_2:15961233-15961252 Msa0397000:intron 30.0%
TTCTCTTATAGACTGTCATT+AGG + chr3_2:15961262-15961281 Msa0397000:intron 30.0%
TTTGCAGTACTTCAACTATA+TGG + chr3_2:15961360-15961379 Msa0397000:intron 30.0%
TTGCAGTACTTCAACTATAT+GGG + chr3_2:15961361-15961380 Msa0397000:intron 30.0%
TTTATCATATGTTCCCTCAA+CGG - chr3_2:15961395-15961414 None:intergenic 30.0%
TGAGGGAACATATGATAAAA+TGG + chr3_2:15961396-15961415 Msa0397000:CDS 30.0%
! TTCAAGAGTTCCTCAATTTT+CGG - chr3_2:15961493-15961512 None:intergenic 30.0%
GTAGTTGAAATGGCAAATAA+TGG - chr3_2:15961636-15961655 None:intergenic 30.0%
AAACAGCTATGTAGTTGAAA+TGG - chr3_2:15961646-15961665 None:intergenic 30.0%
! ATTTCATATGATTTGGCCTT+TGG + chr3_2:15961693-15961712 Msa0397000:three_prime_UTR 30.0%
CATGCTAATAATGAATCCAA+AGG - chr3_2:15961712-15961731 None:intergenic 30.0%
GTATATCTATGATAGTCACA+AGG - chr3_2:15961758-15961777 None:intergenic 30.0%
!! TAGAATTTGAAATGATGGGT+TGG - chr3_2:15960057-15960076 None:intergenic 30.0%
AGAAACTTGTGAAGTGATTA+AGG - chr3_2:15960083-15960102 None:intergenic 30.0%
! TGGTTCAAGTTTGGTAAAAA+TGG + chr3_2:15960217-15960236 Msa0397000:CDS 30.0%
GTGAATGAAGCATAAAAAAG+GGG - chr3_2:15960499-15960518 None:intergenic 30.0%
ACACTTACTAATTGTCTCTA+AGG - chr3_2:15960644-15960663 None:intergenic 30.0%
AGTAAGTGTCACCTTAAATT+AGG + chr3_2:15960655-15960674 Msa0397000:intron 30.0%
AAAAAACCATTTGAGGAAAG+GGG - chr3_2:15960690-15960709 None:intergenic 30.0%
!! CATAAGTTTGCTTTTGATTC+TGG + chr3_2:15960748-15960767 Msa0397000:intron 30.0%
!! TCTGTCCTTCATTTTTAAAC+AGG + chr3_2:15961233-15961252 Msa0397000:intron 30.0%
TTCTCTTATAGACTGTCATT+AGG + chr3_2:15961262-15961281 Msa0397000:intron 30.0%
TTTGCAGTACTTCAACTATA+TGG + chr3_2:15961360-15961379 Msa0397000:intron 30.0%
TTGCAGTACTTCAACTATAT+GGG + chr3_2:15961361-15961380 Msa0397000:intron 30.0%
TTTATCATATGTTCCCTCAA+CGG - chr3_2:15961395-15961414 None:intergenic 30.0%
TGAGGGAACATATGATAAAA+TGG + chr3_2:15961396-15961415 Msa0397000:CDS 30.0%
! TTCAAGAGTTCCTCAATTTT+CGG - chr3_2:15961493-15961512 None:intergenic 30.0%
GTAGTTGAAATGGCAAATAA+TGG - chr3_2:15961636-15961655 None:intergenic 30.0%
AAACAGCTATGTAGTTGAAA+TGG - chr3_2:15961646-15961665 None:intergenic 30.0%
! ATTTCATATGATTTGGCCTT+TGG + chr3_2:15961693-15961712 Msa0397000:three_prime_UTR 30.0%
CATGCTAATAATGAATCCAA+AGG - chr3_2:15961712-15961731 None:intergenic 30.0%
GTATATCTATGATAGTCACA+AGG - chr3_2:15961758-15961777 None:intergenic 30.0%
AACACAACACAACACAACAA+TGG + chr3_2:15960009-15960028 Msa0397000:exon 35.0%
! GGTATTAGAGTTAAGAGTGT+TGG + chr3_2:15960133-15960152 Msa0397000:CDS 35.0%
!! TTAGAGTTAAGAGTGTTGGA+TGG + chr3_2:15960137-15960156 Msa0397000:CDS 35.0%
TCAAGCTTCACCTCTAAATT+TGG + chr3_2:15960166-15960185 Msa0397000:CDS 35.0%
ATTAGAGGGTCCAAATTTAG+AGG - chr3_2:15960179-15960198 None:intergenic 35.0%
TCTAAATTTGGACCCTCTAA+TGG + chr3_2:15960178-15960197 Msa0397000:CDS 35.0%
CTAAATTTGGACCCTCTAAT+GGG + chr3_2:15960179-15960198 Msa0397000:CDS 35.0%
!! AAAAATGGTGTTGATGCTGA+AGG + chr3_2:15960232-15960251 Msa0397000:CDS 35.0%
TATCAAAATCATCACGAGAC+TGG - chr3_2:15960276-15960295 None:intergenic 35.0%
TGATAGAGATGATGTTGAAC+AGG + chr3_2:15960291-15960310 Msa0397000:CDS 35.0%
TAATTTCCCCTTTCCTCAAA+TGG + chr3_2:15960681-15960700 Msa0397000:intron 35.0%
TGAGAATGATGTTAGTTGCT+AGG + chr3_2:15960834-15960853 Msa0397000:intron 35.0%
GGAGTGTGCTTAAGTATTAA+TGG + chr3_2:15960889-15960908 Msa0397000:intron 35.0%
!!! CTCAGTGATGATTTTGAGTT+GGG - chr3_2:15961213-15961232 None:intergenic 35.0%
!! ACTCAGTGATGATTTTGAGT+TGG - chr3_2:15961214-15961233 None:intergenic 35.0%
TGCAGTACTTCAACTATATG+GGG + chr3_2:15961362-15961381 Msa0397000:intron 35.0%
GGGAACATATGATAAAATGG+AGG + chr3_2:15961399-15961418 Msa0397000:CDS 35.0%
TATGATGTAAAAGACGCAGA+TGG + chr3_2:15961526-15961545 Msa0397000:CDS 35.0%
AACACAACACAACACAACAA+TGG + chr3_2:15960009-15960028 Msa0397000:exon 35.0%
! GGTATTAGAGTTAAGAGTGT+TGG + chr3_2:15960133-15960152 Msa0397000:CDS 35.0%
!! TTAGAGTTAAGAGTGTTGGA+TGG + chr3_2:15960137-15960156 Msa0397000:CDS 35.0%
TCAAGCTTCACCTCTAAATT+TGG + chr3_2:15960166-15960185 Msa0397000:CDS 35.0%
ATTAGAGGGTCCAAATTTAG+AGG - chr3_2:15960179-15960198 None:intergenic 35.0%
TCTAAATTTGGACCCTCTAA+TGG + chr3_2:15960178-15960197 Msa0397000:CDS 35.0%
CTAAATTTGGACCCTCTAAT+GGG + chr3_2:15960179-15960198 Msa0397000:CDS 35.0%
!! AAAAATGGTGTTGATGCTGA+AGG + chr3_2:15960232-15960251 Msa0397000:CDS 35.0%
TATCAAAATCATCACGAGAC+TGG - chr3_2:15960276-15960295 None:intergenic 35.0%
TGATAGAGATGATGTTGAAC+AGG + chr3_2:15960291-15960310 Msa0397000:CDS 35.0%
TAATTTCCCCTTTCCTCAAA+TGG + chr3_2:15960681-15960700 Msa0397000:intron 35.0%
TGAGAATGATGTTAGTTGCT+AGG + chr3_2:15960834-15960853 Msa0397000:intron 35.0%
GGAGTGTGCTTAAGTATTAA+TGG + chr3_2:15960889-15960908 Msa0397000:intron 35.0%
!!! CTCAGTGATGATTTTGAGTT+GGG - chr3_2:15961213-15961232 None:intergenic 35.0%
!! ACTCAGTGATGATTTTGAGT+TGG - chr3_2:15961214-15961233 None:intergenic 35.0%
TGCAGTACTTCAACTATATG+GGG + chr3_2:15961362-15961381 Msa0397000:intron 35.0%
GGGAACATATGATAAAATGG+AGG + chr3_2:15961399-15961418 Msa0397000:CDS 35.0%
TATGATGTAAAAGACGCAGA+TGG + chr3_2:15961526-15961545 Msa0397000:CDS 35.0%
CCACAAACTTGTCTTCTTCT+CGG + chr3_2:15960104-15960123 Msa0397000:CDS 40.0%
TTGTCTTCTTCTCGGTTTCT+TGG + chr3_2:15960112-15960131 Msa0397000:CDS 40.0%
GTGAATCTTGACCCATTAGA+GGG - chr3_2:15960193-15960212 None:intergenic 40.0%
TGTGAATCTTGACCCATTAG+AGG - chr3_2:15960194-15960213 None:intergenic 40.0%
!! TTCACATGCTGGTTCAAGTT+TGG + chr3_2:15960208-15960227 Msa0397000:CDS 40.0%
AAAAAAGGGGACATGCAACA+AGG - chr3_2:15960486-15960505 None:intergenic 40.0%
! TCTATGAGAGATTGGTTCAG+TGG + chr3_2:15960575-15960594 Msa0397000:intron 40.0%
TTGGTTCAGTGGTAAGAGTT+TGG + chr3_2:15960586-15960605 Msa0397000:intron 40.0%
! GGCTTTGTAACCTTAAGAGA+CGG + chr3_2:15960607-15960626 Msa0397000:intron 40.0%
GATTCAAACTCCGTCTCTTA+AGG - chr3_2:15960620-15960639 None:intergenic 40.0%
! TAACTTGTGTAACCATGGTC+AGG + chr3_2:15960865-15960884 Msa0397000:intron 40.0%
! TAATTGAAGGAAAGCGCGAA+TGG + chr3_2:15961090-15961109 Msa0397000:intron 40.0%
AAGCCAAAAAATTCACCCTG+TGG + chr3_2:15961429-15961448 Msa0397000:CDS 40.0%
!!! TGTCCACAGGGTGAATTTTT+TGG - chr3_2:15961435-15961454 None:intergenic 40.0%
ACAACAGTAGAATGTCCACA+GGG - chr3_2:15961447-15961466 None:intergenic 40.0%
AACAACAGTAGAATGTCCAC+AGG - chr3_2:15961448-15961467 None:intergenic 40.0%
ATTGAGGAACTCTTGAAAGC+AGG + chr3_2:15961496-15961515 Msa0397000:CDS 40.0%
ATGTAAAAGACGCAGATGGA+CGG + chr3_2:15961530-15961549 Msa0397000:CDS 40.0%
!! TATGCAGCACTGACACTTAA+AGG + chr3_2:15961793-15961812 Msa0397000:three_prime_UTR 40.0%
! GTGTTTGAAACTGACACATG+TGG + chr3_2:15961841-15961860 Msa0397000:three_prime_UTR 40.0%
CCACAAACTTGTCTTCTTCT+CGG + chr3_2:15960104-15960123 Msa0397000:CDS 40.0%
TTGTCTTCTTCTCGGTTTCT+TGG + chr3_2:15960112-15960131 Msa0397000:CDS 40.0%
GTGAATCTTGACCCATTAGA+GGG - chr3_2:15960193-15960212 None:intergenic 40.0%
TGTGAATCTTGACCCATTAG+AGG - chr3_2:15960194-15960213 None:intergenic 40.0%
!! TTCACATGCTGGTTCAAGTT+TGG + chr3_2:15960208-15960227 Msa0397000:CDS 40.0%
AAAAAAGGGGACATGCAACA+AGG - chr3_2:15960486-15960505 None:intergenic 40.0%
! TCTATGAGAGATTGGTTCAG+TGG + chr3_2:15960575-15960594 Msa0397000:intron 40.0%
TTGGTTCAGTGGTAAGAGTT+TGG + chr3_2:15960586-15960605 Msa0397000:intron 40.0%
! GGCTTTGTAACCTTAAGAGA+CGG + chr3_2:15960607-15960626 Msa0397000:intron 40.0%
GATTCAAACTCCGTCTCTTA+AGG - chr3_2:15960620-15960639 None:intergenic 40.0%
! TAACTTGTGTAACCATGGTC+AGG + chr3_2:15960865-15960884 Msa0397000:intron 40.0%
! TAATTGAAGGAAAGCGCGAA+TGG + chr3_2:15961090-15961109 Msa0397000:intron 40.0%
AAGCCAAAAAATTCACCCTG+TGG + chr3_2:15961429-15961448 Msa0397000:CDS 40.0%
!!! TGTCCACAGGGTGAATTTTT+TGG - chr3_2:15961435-15961454 None:intergenic 40.0%
ACAACAGTAGAATGTCCACA+GGG - chr3_2:15961447-15961466 None:intergenic 40.0%
AACAACAGTAGAATGTCCAC+AGG - chr3_2:15961448-15961467 None:intergenic 40.0%
ATTGAGGAACTCTTGAAAGC+AGG + chr3_2:15961496-15961515 Msa0397000:CDS 40.0%
ATGTAAAAGACGCAGATGGA+CGG + chr3_2:15961530-15961549 Msa0397000:CDS 40.0%
!! TATGCAGCACTGACACTTAA+AGG + chr3_2:15961793-15961812 Msa0397000:three_prime_UTR 40.0%
! GTGTTTGAAACTGACACATG+TGG + chr3_2:15961841-15961860 Msa0397000:three_prime_UTR 40.0%
CCGAGAAGAAGACAAGTTTG+TGG - chr3_2:15960107-15960126 None:intergenic 45.0%
ATGGGTCAAGATTCACATGC+TGG + chr3_2:15960197-15960216 Msa0397000:CDS 45.0%
!! GCTGAAGGTGCTGGTATTTA+TGG + chr3_2:15960247-15960266 Msa0397000:CDS 45.0%
CAAAGAGAATGTGCATGCGA+TGG + chr3_2:15961310-15961329 Msa0397000:intron 45.0%
CTGTTGTTAGCTGCATCAGA+AGG + chr3_2:15961460-15961479 Msa0397000:CDS 45.0%
! AGGTGACTTGCCGAAAATTG+AGG + chr3_2:15961480-15961499 Msa0397000:CDS 45.0%
CCGAGAAGAAGACAAGTTTG+TGG - chr3_2:15960107-15960126 None:intergenic 45.0%
ATGGGTCAAGATTCACATGC+TGG + chr3_2:15960197-15960216 Msa0397000:CDS 45.0%
!! GCTGAAGGTGCTGGTATTTA+TGG + chr3_2:15960247-15960266 Msa0397000:CDS 45.0%
CAAAGAGAATGTGCATGCGA+TGG + chr3_2:15961310-15961329 Msa0397000:intron 45.0%
CTGTTGTTAGCTGCATCAGA+AGG + chr3_2:15961460-15961479 Msa0397000:CDS 45.0%
! AGGTGACTTGCCGAAAATTG+AGG + chr3_2:15961480-15961499 Msa0397000:CDS 45.0%
CTTGTGTAACCATGGTCAGG+AGG + chr3_2:15960868-15960887 Msa0397000:intron 50.0%
CTTGTGTAACCATGGTCAGG+AGG + chr3_2:15960868-15960887 Msa0397000:intron 50.0%
!! GGTGTTGATGCTGAAGGTGC+TGG + chr3_2:15960238-15960257 Msa0397000:CDS 55.0%
AAGCACACTCCTCCTGACCA+TGG - chr3_2:15960880-15960899 None:intergenic 55.0%
TATGGGGATGCTTGCCGTTG+AGG + chr3_2:15961378-15961397 Msa0397000:CDS 55.0%
ATGGGGATGCTTGCCGTTGA+GGG + chr3_2:15961379-15961398 Msa0397000:CDS 55.0%
!! GGTGTTGATGCTGAAGGTGC+TGG + chr3_2:15960238-15960257 Msa0397000:CDS 55.0%
AAGCACACTCCTCCTGACCA+TGG - chr3_2:15960880-15960899 None:intergenic 55.0%
TATGGGGATGCTTGCCGTTG+AGG + chr3_2:15961378-15961397 Msa0397000:CDS 55.0%
ATGGGGATGCTTGCCGTTGA+GGG + chr3_2:15961379-15961398 Msa0397000:CDS 55.0%
CGCAGATGGACGGACAGCGT+TGG + chr3_2:15961540-15961559 Msa0397000:CDS 65.0%
CGCAGATGGACGGACAGCGT+TGG + chr3_2:15961540-15961559 Msa0397000:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 15959962 15961881 15959962 ID=Msa0397000;Name=Msa0397000
chr3_2 mRNA 15959962 15961881 15959962 ID=Msa0397000-mRNA-1;Parent=Msa0397000;Name=Msa0397000-mRNA-1;_AED=0.02;_eAED=0.02;_QI=66|1|1|1|1|1|2|260|179
chr3_2 exon 15959962 15960312 15959962 ID=Msa0397000-mRNA-1:exon:3566;Parent=Msa0397000-mRNA-1
chr3_2 exon 15961367 15961881 15961367 ID=Msa0397000-mRNA-1:exon:3567;Parent=Msa0397000-mRNA-1
chr3_2 five_prime_UTR 15959962 15960027 15959962 ID=Msa0397000-mRNA-1:five_prime_utr;Parent=Msa0397000-mRNA-1
chr3_2 CDS 15960028 15960312 15960028 ID=Msa0397000-mRNA-1:cds;Parent=Msa0397000-mRNA-1
chr3_2 CDS 15961367 15961621 15961367 ID=Msa0397000-mRNA-1:cds;Parent=Msa0397000-mRNA-1
chr3_2 three_prime_UTR 15961622 15961881 15961622 ID=Msa0397000-mRNA-1:three_prime_utr;Parent=Msa0397000-mRNA-1
Gene Sequence

>Msa0397000

ATGGCTTCAATCACATGCATAACTCACCAACCCATCATTTCAAATTCTAAATCCTTAATCACTTCACAAGTTTCTTCCACAAACTTGTCTTCTTCTCGGTTTCTTGGTATTAGAGTTAAGAGTGTTGGATGGTCAAGCTCAAGCTTCACCTCTAAATTTGGACCCTCTAATGGGTCAAGATTCACATGCTGGTTCAAGTTTGGTAAAAATGGTGTTGATGCTGAAGGTGCTGGTATTTATGGTAGCCAGTCTCGTGATGATTTTGATAGAGATGATGTTGAACAGTACTTCAACTATATGGGGATGCTTGCCGTTGAGGGAACATATGATAAAATGGAGGCTCTTCTAAGCCAAAAAATTCACCCTGTGGACATTCTACTGTTGTTAGCTGCATCAGAAGGTGACTTGCCGAAAATTGAGGAACTCTTGAAAGCAGGAGCAAAATATGATGTAAAAGACGCAGATGGACGGACAGCGTTGGATAGAGCTAATGCTGAAGTTAAAGATTTCATTCTTAATTTTTCAGTGCAGAGAGCATGA

Protein sequence

>Msa0397000

MASITCITHQPIISNSKSLITSQVSSTNLSSSRFLGIRVKSVGWSSSSFTSKFGPSNGSRFTCWFKFGKNGVDAEGAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLSQKIHPVDILLLLAASEGDLPKIEELLKAGAKYDVKDADGRTALDRANAEVKDFILNFSVQRA*