AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0140330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0140330 MtrunA17_Chr3g0138501 90.253 277 22 3 15 290 21 293 3.46e-165 460
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0140330 AT5G11450.2 64.516 248 81 3 47 290 71 315 5.94e-114 331
Msa0140330 AT5G11450.1 64.516 248 81 3 47 290 53 297 9.42e-114 330

Find 73 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTGAAGATAAGGTTGTTAT+TGG 0.174513 1_3:+74586072 None:intergenic
ACAAAGATCCCTGGAGATTT+TGG 0.175536 1_3:-74582232 Msa0140330:CDS
ACTGAAACGGTTGTCTCTTT+AGG 0.194094 1_3:-74582064 Msa0140330:three_prime_UTR
CTGAAACGGTTGTCTCTTTA+GGG 0.239298 1_3:-74582063 Msa0140330:three_prime_UTR
GAAATACTTACCATTGAATT+AGG 0.251354 1_3:+74583298 None:intergenic
ACTCTTCAAAGAACATAATA+TGG 0.255715 1_3:+74582144 None:intergenic
TGTCTTGCAGTGGCTCTTGC+TGG 0.263989 1_3:-74585837 Msa0140330:intron
AGGAGCATTTGGTTTGGTTT+TGG 0.272796 1_3:+74586035 None:intergenic
TCTTATCCTTCAAGTTTATA+AGG 0.274761 1_3:+74584413 None:intergenic
CAACCGTTTCAGTAGGGATT+TGG 0.275099 1_3:+74582074 None:intergenic
AAGAGGAATTTACCAGAAAA+AGG 0.297343 1_3:+74585911 None:intergenic
TTTCATCATCTTCTTCTAGA+AGG 0.299644 1_3:-74585985 Msa0140330:CDS
CGCGAAGTGGTGAAACTAAC+TGG 0.325804 1_3:-74586157 Msa0140330:five_prime_UTR
TATAGGTGGGGTGATGGAAT+TGG 0.358565 1_3:-74586184 Msa0140330:five_prime_UTR
TGTCATCATCATTCAAGAAA+AGG 0.376876 1_3:+74582034 None:intergenic
AGATTGAAGGCGAACCTTAC+TGG 0.380241 1_3:-74583348 Msa0140330:CDS
CCAATAACAACCTTATCTTC+AGG 0.404699 1_3:-74586072 Msa0140330:CDS
GGATTGTTGGAAGGAGCATT+TGG 0.408319 1_3:+74586024 None:intergenic
GTCATCATCATTCAAGAAAA+GGG 0.411667 1_3:+74582035 None:intergenic
CTGAAGAATCAGGAATTTAC+CGG 0.413569 1_3:-74583194 Msa0140330:CDS
TGCAAACCTTATAAACTTGA+AGG 0.413975 1_3:-74584419 Msa0140330:CDS
AAGAATAAGAGCTGGATTGT+TGG 0.421647 1_3:+74586095 None:intergenic
ACTTCAACAAGACCCCAAAA+TGG 0.433609 1_3:-74585805 Msa0140330:CDS
ATTCATGTAGTAACCTTTGT+GGG 0.433909 1_3:-74582182 Msa0140330:three_prime_UTR
TGAAAGTGAGATAATGTTAT+AGG 0.440242 1_3:-74586201 None:intergenic
ATTGTCTCCTCACAGATTGA+AGG 0.445126 1_3:-74583361 Msa0140330:intron
GTTGGAAGGAGCATTTGGTT+TGG 0.448463 1_3:+74586029 None:intergenic
GTTGTACAGTCTGAAGAATC+AGG 0.450686 1_3:-74583204 Msa0140330:intron
TATTCATGTAGTAACCTTTG+TGG 0.456061 1_3:-74582183 Msa0140330:three_prime_UTR
GCAGCCGATGAATATCGTTC+TGG 0.459979 1_3:+74584890 None:intergenic
AATCTCCAGGGATCTTTGTA+TGG 0.474697 1_3:+74582236 None:intergenic
TAATGTTATAGGTGGGGTGA+TGG 0.475652 1_3:-74586190 Msa0140330:five_prime_UTR
ACTTGAAGGATAAGAGCAAA+TGG 0.476008 1_3:-74584405 Msa0140330:CDS
AAGAGGGTAAAGATAAGAAT+AGG 0.477402 1_3:+74585758 None:intergenic
TTTCCAAATCCCTACTGAAA+CGG 0.480154 1_3:-74582077 Msa0140330:three_prime_UTR
GGATTACCCTCCTGAAGATA+AGG 0.481706 1_3:+74586062 None:intergenic
TCGTAAATCACCTAATTCAA+TGG 0.488014 1_3:-74583308 Msa0140330:intron
TTCATCATCTTCTTCTAGAA+GGG 0.496757 1_3:-74585984 Msa0140330:CDS
TTTATAAGGTTTGCACTTGG+AGG 0.505460 1_3:+74584427 None:intergenic
GTTATTGGAAGAATAAGAGC+TGG 0.521334 1_3:+74586087 None:intergenic
TTCCTCCATACAAAGATCCC+TGG 0.524136 1_3:-74582241 Msa0140330:CDS
TGCATCGAGAACTGAACTCT+CGG 0.532100 1_3:+74583625 None:intergenic
TTATAAGGTTTGCACTTGGA+GGG 0.533271 1_3:+74584428 None:intergenic
AATTAGGTGATTTACGAATG+AGG 0.544454 1_3:+74583314 None:intergenic
TAAATGGCTGCATATGAATG+AGG 0.562818 1_3:-74581930 Msa0140330:three_prime_UTR
AAAGAGACAACCGTTTCAGT+AGG 0.566133 1_3:+74582067 None:intergenic
TTTATCATCGGATTGTTGGA+AGG 0.566618 1_3:+74586015 None:intergenic
AAGAGACAACCGTTTCAGTA+GGG 0.567852 1_3:+74582068 None:intergenic
AGGTATTCATAATACCAGTA+AGG 0.568849 1_3:+74583334 None:intergenic
AAGTGAGATAATGTTATAGG+TGG 0.580126 1_3:-74586198 None:intergenic
AATCTTAAATACTAGTCTAG+TGG 0.581335 1_3:-74582004 Msa0140330:intron
ATGGACTGCAAAAGATGTTG+TGG 0.582234 1_3:-74584386 Msa0140330:CDS
CAATCTCATCATTTCCGTCA+CGG 0.585889 1_3:-74584546 Msa0140330:intron
ACTGAGGGTCGAAGCGCTGA+TGG 0.592389 1_3:+74582842 None:intergenic
ATAAGAGCTGGATTGTTGGA+AGG 0.595730 1_3:+74586099 None:intergenic
AAACTAACTGGAGCTAGCAA+TGG 0.598377 1_3:-74586145 Msa0140330:five_prime_UTR
AAGTTTATAAGGTTTGCACT+TGG 0.598414 1_3:+74584424 None:intergenic
AGTGAGATAATGTTATAGGT+GGG 0.602141 1_3:-74586197 None:intergenic
CTGTTGAAGCAACATAATGC+CGG 0.605398 1_3:+74583175 None:intergenic
GTGAGATAATGTTATAGGTG+GGG 0.605698 1_3:-74586196 None:intergenic
CTCCAGGGATCTTTGTATGG+AGG 0.613390 1_3:+74582239 None:intergenic
AAAGCCAGAACGATATTCAT+CGG 0.615878 1_3:-74584894 Msa0140330:CDS
ATAACAACCTTATCTTCAGG+AGG 0.618318 1_3:-74586069 Msa0140330:CDS
CTCGGCTGAGCGCTGAACTG+AGG 0.632575 1_3:+74583643 None:intergenic
AATTCCTTGCAGCTAATGCG+CGG 0.633327 1_3:-74584604 Msa0140330:intron
GCTTCAACAGCAGAAAGAGA+TGG 0.651152 1_3:-74583162 Msa0140330:intron
TAACAACCTTATCTTCAGGA+GGG 0.664496 1_3:-74586068 Msa0140330:CDS
ACATGAATTTCACCCCACAA+AGG 0.669412 1_3:+74582169 None:intergenic
AGATTGAGGAAATACCGTGA+CGG 0.681795 1_3:+74584532 None:intergenic
TTCATGTAGTAACCTTTGTG+GGG 0.682116 1_3:-74582181 Msa0140330:three_prime_UTR
TTGTTAGAGATAGTGAAGTG+AGG 0.696186 1_3:+74585942 None:intergenic
CTTCGACCCTCAGTCCACAG+TGG 0.711960 1_3:-74582833 Msa0140330:CDS
TGGAATTGGAAATCGCGAAG+TGG 0.727811 1_3:-74586170 Msa0140330:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACGAAAATAAAATAAAA+TGG + chr1_3:74582435-74582454 None:intergenic 10.0%
!! AACTATAAATAAAGAAATAA+GGG + chr1_3:74582902-74582921 None:intergenic 10.0%
!! TATTTATAGTTGTTATAAAT+TGG - chr1_3:74582911-74582930 Msa0140330:intron 10.0%
!! AATATCAGAAATAAATTTAA+AGG + chr1_3:74584427-74584446 None:intergenic 10.0%
!! CAACTATAAATAAAGAAATA+AGG + chr1_3:74582903-74582922 None:intergenic 15.0%
!!! TAGTTTAATTATAGTTTTGT+TGG + chr1_3:74583102-74583121 None:intergenic 15.0%
!! AAAACTATAATTAAACTAGT+TGG - chr1_3:74583104-74583123 Msa0140330:intron 15.0%
!! AAAATGATCATAAAAAATAC+TGG - chr1_3:74583972-74583991 Msa0140330:intron 15.0%
!!! AAAATATTGATTTAACATGT+TGG + chr1_3:74584033-74584052 None:intergenic 15.0%
!!! ACTAATATGTAAATAGTTTT+AGG + chr1_3:74584213-74584232 None:intergenic 15.0%
!!! TGTTACAAATTTACATATTT+TGG - chr1_3:74584703-74584722 Msa0140330:intron 15.0%
!! AAAAATTATTCATCTATCAA+TGG - chr1_3:74585558-74585577 Msa0140330:intron 15.0%
!! AAAATTATTCATCTATCAAT+GGG - chr1_3:74585559-74585578 Msa0140330:intron 15.0%
!! AAAAAATTATTAGAATGTCA+AGG + chr1_3:74585781-74585800 None:intergenic 15.0%
!!! TAATAATTTTTTATGCAGAT+GGG - chr1_3:74585789-74585808 Msa0140330:CDS 15.0%
!! TGAAAAACTTGAAATTTAAA+TGG - chr1_3:74586166-74586185 Msa0140330:five_prime_UTR 15.0%
!!! TGAAAAATCTCTTTTATCAT+CGG + chr1_3:74582112-74582131 None:intergenic 20.0%
!!! TTGAAGACAAAATTTTTAGA+GGG + chr1_3:74582386-74582405 None:intergenic 20.0%
!!! TTTGAAGACAAAATTTTTAG+AGG + chr1_3:74582387-74582406 None:intergenic 20.0%
!!! CTAAAAATTTTGTCTTCAAA+TGG - chr1_3:74582387-74582406 Msa0140330:intron 20.0%
!! AGATTTAAAGATTAATGAGT+TGG - chr1_3:74582660-74582679 Msa0140330:intron 20.0%
!! ATGTTATTGATATTGTTGAA+TGG - chr1_3:74582975-74582994 Msa0140330:intron 20.0%
!! TGTTATTGATATTGTTGAAT+GGG - chr1_3:74582976-74582995 Msa0140330:intron 20.0%
!! ATAATTTGAAGATGTGTTAA+TGG + chr1_3:74583032-74583051 None:intergenic 20.0%
!! AACTCTTTCCATATAATTAA+AGG - chr1_3:74583184-74583203 Msa0140330:CDS 20.0%
!! ACTCTTTCCATATAATTAAA+GGG - chr1_3:74583185-74583204 Msa0140330:CDS 20.0%
!!! ATATAAGCTCTTTAAAAGAT+AGG - chr1_3:74583371-74583390 Msa0140330:intron 20.0%
!! ACTAGATATTATCTCTAATT+GGG - chr1_3:74583921-74583940 Msa0140330:intron 20.0%
!!! TAGAAGTTTTGATGTAATAT+TGG - chr1_3:74584160-74584179 Msa0140330:intron 20.0%
!! GATCCATAGAAAAAAAATAT+AGG - chr1_3:74585150-74585169 Msa0140330:intron 20.0%
!!! TAGCCTATATTTTTTTTCTA+TGG + chr1_3:74585156-74585175 None:intergenic 20.0%
!!! TCTTTTTTGGAAAAGAATAA+AGG - chr1_3:74585534-74585553 Msa0140330:intron 20.0%
!!! ATTCGTTAATTTTCAAATGA+AGG + chr1_3:74585732-74585751 None:intergenic 20.0%
!!! CTAATAATTTTTTATGCAGA+TGG - chr1_3:74585788-74585807 Msa0140330:CDS 20.0%
!!! AATAATTTTTTATGCAGATG+GGG - chr1_3:74585790-74585809 Msa0140330:CDS 20.0%
!!! TTGAAGAGTGAAATTTTTAA+TGG - chr1_3:74585982-74586001 Msa0140330:CDS 20.0%
! CGAAAATAAAATAAAATGGC+AGG + chr1_3:74582431-74582450 None:intergenic 25.0%
!! TTTAAAGATTAATGAGTTGG+TGG - chr1_3:74582663-74582682 Msa0140330:intron 25.0%
!! AATGAACTTCTTTTCTCAAT+TGG + chr1_3:74582951-74582970 None:intergenic 25.0%
!!! AAGTTTTCATTGATTGTTGT+AGG - chr1_3:74583156-74583175 Msa0140330:intron 25.0%
! GATTCTACCCTTTAATTATA+TGG + chr1_3:74583195-74583214 None:intergenic 25.0%
!!! AGCAATTTTAATCCAGAAAA+AGG + chr1_3:74583483-74583502 None:intergenic 25.0%
!!! GAAAATGATAAAGCATTGAA+TGG + chr1_3:74583634-74583653 None:intergenic 25.0%
!! TTTTCCCATTAAATTCAGAT+AGG - chr1_3:74583661-74583680 Msa0140330:intron 25.0%
!! TCTTATCCTTCAAGTTTATA+AGG + chr1_3:74583702-74583721 None:intergenic 25.0%
! GATAATATCTAGTGAGTAAT+GGG + chr1_3:74583914-74583933 None:intergenic 25.0%
! AGATAATATCTAGTGAGTAA+TGG + chr1_3:74583915-74583934 None:intergenic 25.0%
! CACTAGATATTATCTCTAAT+TGG - chr1_3:74583920-74583939 Msa0140330:intron 25.0%
!! ATCATTTTATATCGCTTATC+TGG + chr1_3:74583960-74583979 None:intergenic 25.0%
! AATATTGGATACAAGAATGA+AGG - chr1_3:74584175-74584194 Msa0140330:intron 25.0%
! ATATTGGATACAAGAATGAA+GGG - chr1_3:74584176-74584195 Msa0140330:intron 25.0%
! CATTAGAAACATATTGTTCT+CGG + chr1_3:74584283-74584302 None:intergenic 25.0%
!! ACAAACAAATCACATGTTTT+GGG + chr1_3:74584650-74584669 None:intergenic 25.0%
!! AACAAACAAATCACATGTTT+TGG + chr1_3:74584651-74584670 None:intergenic 25.0%
! GAAATACTTACCATTGAATT+AGG + chr1_3:74584817-74584836 None:intergenic 25.0%
!!! TGGTGCATTTTCTTTTTTTA+AGG - chr1_3:74584841-74584860 Msa0140330:intron 25.0%
!!! TTCTTTTTTTAAGGAAGTTG+TGG - chr1_3:74584850-74584869 Msa0140330:intron 25.0%
! AAAGTAGGAATAATTTGAGA+GGG + chr1_3:74584980-74584999 None:intergenic 25.0%
! TAAAGTAGGAATAATTTGAG+AGG + chr1_3:74584981-74585000 None:intergenic 25.0%
! TAATAATTGTGCTTGATTTC+AGG - chr1_3:74585236-74585255 Msa0140330:intron 25.0%
! GTTCTCAGTAAGAATTTATA+TGG + chr1_3:74585504-74585523 None:intergenic 25.0%
! AGATGTTGAAATAGTATGTT+AGG + chr1_3:74585681-74585700 None:intergenic 25.0%
!!! CCTTTGAACAATATTTTGAT+GGG + chr1_3:74585705-74585724 None:intergenic 25.0%
!!! TCCTTTGAACAATATTTTGA+TGG + chr1_3:74585706-74585725 None:intergenic 25.0%
! ACTCTTCAAAGAACATAATA+TGG + chr1_3:74585971-74585990 None:intergenic 25.0%
!! AATCTTAAATACTAGTCTAG+TGG - chr1_3:74586108-74586127 Msa0140330:CDS 25.0%
!!! ATTTGGTTTGGTTTTGGTTA+AGG + chr1_3:74582074-74582093 None:intergenic 30.0%
TTTCATCATCTTCTTCTAGA+AGG - chr1_3:74582127-74582146 Msa0140330:three_prime_UTR 30.0%
! TTCATCATCTTCTTCTAGAA+GGG - chr1_3:74582128-74582147 Msa0140330:three_prime_UTR 30.0%
AAGAGGAATTTACCAGAAAA+AGG + chr1_3:74582204-74582223 None:intergenic 30.0%
!! TCCAAAAAAGAAGCCATTTT+GGG + chr1_3:74582323-74582342 None:intergenic 30.0%
! ATCCAAAAAAGAAGCCATTT+TGG + chr1_3:74582324-74582343 None:intergenic 30.0%
AAGAGGGTAAAGATAAGAAT+AGG + chr1_3:74582357-74582376 None:intergenic 30.0%
TAAAATAAAATGGCAGGCAA+AGG + chr1_3:74582425-74582444 None:intergenic 30.0%
! GTTTCTGTTATAGCTTTTCT+AGG + chr1_3:74582519-74582538 None:intergenic 30.0%
! AATTTGTTTCCAGTTTAAGC+GGG + chr1_3:74582827-74582846 None:intergenic 30.0%
! CAATTTGTTTCCAGTTTAAG+CGG + chr1_3:74582828-74582847 None:intergenic 30.0%
! TGTGTTAATGGCTAGTTATA+TGG + chr1_3:74583020-74583039 None:intergenic 30.0%
AGCAAGAGTAAATAATGCTT+TGG - chr1_3:74583053-74583072 Msa0140330:intron 30.0%
AACAATCAATGAAAACTTGC+AGG + chr1_3:74583154-74583173 None:intergenic 30.0%
CAAAAAAACTTACGAGAAAG+TGG + chr1_3:74583249-74583268 None:intergenic 30.0%
!!! TTTTTTTGTCTTCCTTTGCA+AGG - chr1_3:74583261-74583280 Msa0140330:intron 30.0%
AAGTTTATAAGGTTTGCACT+TGG + chr1_3:74583691-74583710 None:intergenic 30.0%
TGCAAACCTTATAAACTTGA+AGG - chr1_3:74583693-74583712 Msa0140330:intron 30.0%
GTTACTCATGCTATTCTTAT+TGG - chr1_3:74583785-74583804 Msa0140330:intron 30.0%
AACTATAGTTTAACCATGTG+GGG + chr1_3:74584109-74584128 None:intergenic 30.0%
CAACTATAGTTTAACCATGT+GGG + chr1_3:74584110-74584129 None:intergenic 30.0%
TCAACTATAGTTTAACCATG+TGG + chr1_3:74584111-74584130 None:intergenic 30.0%
! CGAGAACAATATGTTTCTAA+TGG - chr1_3:74584281-74584300 Msa0140330:intron 30.0%
CCTAAAGAATACAACTTCAA+AGG + chr1_3:74584342-74584361 None:intergenic 30.0%
!! CCTTTGAAGTTGTATTCTTT+AGG - chr1_3:74584339-74584358 Msa0140330:intron 30.0%
AGGTATTCATAATACCAGTA+AGG + chr1_3:74584781-74584800 None:intergenic 30.0%
AATTAGGTGATTTACGAATG+AGG + chr1_3:74584801-74584820 None:intergenic 30.0%
TCGTAAATCACCTAATTCAA+TGG - chr1_3:74584804-74584823 Msa0140330:intron 30.0%
AAAAAAGAAAATGCACCAAG+AGG + chr1_3:74584839-74584858 None:intergenic 30.0%
! GGTGTATGTGATTTTTACTT+TGG - chr1_3:74584871-74584890 Msa0140330:intron 30.0%
AATTCACATTAGAATGCACA+AGG + chr1_3:74585031-74585050 None:intergenic 30.0%
TTTCAAGCAATATTATGCAG+AGG + chr1_3:74585057-74585076 None:intergenic 30.0%
ATACTTGTTCCAGAGATAAA+AGG - chr1_3:74585124-74585143 Msa0140330:intron 30.0%
!! AAGTTGACTTGACAATAGTT+TGG - chr1_3:74585474-74585493 Msa0140330:intron 30.0%
TTCAGTAGAAAATGAAGACT+TGG + chr1_3:74585643-74585662 None:intergenic 30.0%
CCCATCAAAATATTGTTCAA+AGG - chr1_3:74585702-74585721 Msa0140330:intron 30.0%
! ATTTTTCACCAAAATCTCCA+GGG + chr1_3:74585891-74585910 None:intergenic 30.0%
TATTCATGTAGTAACCTTTG+TGG - chr1_3:74585929-74585948 Msa0140330:CDS 30.0%
ATTCATGTAGTAACCTTTGT+GGG - chr1_3:74585930-74585949 Msa0140330:CDS 30.0%
GTCATCATCATTCAAGAAAA+GGG + chr1_3:74586080-74586099 None:intergenic 30.0%
TGTCATCATCATTCAAGAAA+AGG + chr1_3:74586081-74586100 None:intergenic 30.0%
!! CAATGGTTTTACACTCTCTA+TGG - chr1_3:74581984-74582003 Msa0140330:three_prime_UTR 35.0%
AAGAATAAGAGCTGGATTGT+TGG + chr1_3:74582020-74582039 None:intergenic 35.0%
GTTATTGGAAGAATAAGAGC+TGG + chr1_3:74582028-74582047 None:intergenic 35.0%
CCTGAAGATAAGGTTGTTAT+TGG + chr1_3:74582043-74582062 None:intergenic 35.0%
CCAATAACAACCTTATCTTC+AGG - chr1_3:74582040-74582059 Msa0140330:intron 35.0%
ATAACAACCTTATCTTCAGG+AGG - chr1_3:74582043-74582062 Msa0140330:three_prime_UTR 35.0%
TAACAACCTTATCTTCAGGA+GGG - chr1_3:74582044-74582063 Msa0140330:three_prime_UTR 35.0%
TTTATCATCGGATTGTTGGA+AGG + chr1_3:74582100-74582119 None:intergenic 35.0%
! CTCTTTTATCATCGGATTGT+TGG + chr1_3:74582104-74582123 None:intergenic 35.0%
TTGTTAGAGATAGTGAAGTG+AGG + chr1_3:74582173-74582192 None:intergenic 35.0%
AGCAGCAAATGAAGAAAAAG+AGG + chr1_3:74582221-74582240 None:intergenic 35.0%
!! CCAAAAAAGAAGCCATTTTG+GGG + chr1_3:74582322-74582341 None:intergenic 35.0%
TCTTCTCTCTACATGAAAGT+GGG + chr1_3:74582558-74582577 None:intergenic 35.0%
TTTCATGTAGAGAGAAGAGT+AGG - chr1_3:74582560-74582579 Msa0140330:intron 35.0%
AGTAAGGAGAGTAGATTAGA+TGG - chr1_3:74582597-74582616 Msa0140330:intron 35.0%
! AAGTCTTATCCCATTAAGTG+TGG + chr1_3:74582732-74582751 None:intergenic 35.0%
AAAGCCAGAACGATATTCAT+CGG - chr1_3:74583218-74583237 Msa0140330:intron 35.0%
! GCTTTGTAGTTTCCTTTTTC+TGG - chr1_3:74583468-74583487 Msa0140330:intron 35.0%
! ATGCAACAAGTTTGAGATTG+AGG + chr1_3:74583597-74583616 None:intergenic 35.0%
AGGGCCTATCTGAATTTAAT+GGG + chr1_3:74583668-74583687 None:intergenic 35.0%
TTATAAGGTTTGCACTTGGA+GGG + chr1_3:74583687-74583706 None:intergenic 35.0%
TTTATAAGGTTTGCACTTGG+AGG + chr1_3:74583688-74583707 None:intergenic 35.0%
ACTTGAAGGATAAGAGCAAA+TGG - chr1_3:74583707-74583726 Msa0140330:intron 35.0%
TTGAAGAAACAGTAGCTATC+GGG + chr1_3:74583856-74583875 None:intergenic 35.0%
CTTGAAGAAACAGTAGCTAT+CGG + chr1_3:74583857-74583876 None:intergenic 35.0%
! TATCTCTAATTGGGAAGCAT+AGG - chr1_3:74583930-74583949 Msa0140330:intron 35.0%
!!! AGTCAAGCCTTTTTAGCTTT+TGG - chr1_3:74584230-74584249 Msa0140330:intron 35.0%
!!! GTCAAGCCTTTTTAGCTTTT+GGG - chr1_3:74584231-74584250 Msa0140330:intron 35.0%
TTGACACCCAAAAGCTAAAA+AGG + chr1_3:74584240-74584259 None:intergenic 35.0%
TTTGAGCACTTGTATATGCA+AGG - chr1_3:74584308-74584327 Msa0140330:intron 35.0%
TGAAGTTGTATTCTTTAGGC+AGG - chr1_3:74584343-74584362 Msa0140330:intron 35.0%
TTGTATTCTTTAGGCAGGAT+TGG - chr1_3:74584348-74584367 Msa0140330:intron 35.0%
CAATGGTAAGTATTTCCTCT+TGG - chr1_3:74584821-74584840 Msa0140330:intron 35.0%
CTGAAGAATCAGGAATTTAC+CGG - chr1_3:74584918-74584937 Msa0140330:intron 35.0%
CACGTTTGCAATACTAAAGT+AGG + chr1_3:74584995-74585014 None:intergenic 35.0%
TATTGCTTGAAAGCTCTTGT+TGG - chr1_3:74585065-74585084 Msa0140330:intron 35.0%
CAAGTATGACTCTGATTGAA+GGG + chr1_3:74585111-74585130 None:intergenic 35.0%
ACAAGTATGACTCTGATTGA+AGG + chr1_3:74585112-74585131 None:intergenic 35.0%
! TGGATCTTTCCTTTTATCTC+TGG + chr1_3:74585136-74585155 None:intergenic 35.0%
TTCTTACTGAGAACATGTGA+CGG - chr1_3:74585510-74585529 Msa0140330:intron 35.0%
!!! AACATGTGACGGTTCTTTTT+TGG - chr1_3:74585521-74585540 Msa0140330:intron 35.0%
!!! CTCACAGTCTTTTCAAGTAA+AGG + chr1_3:74585816-74585835 None:intergenic 35.0%
! GGAGGAACATAATTTTCTGT+AGG + chr1_3:74585858-74585877 None:intergenic 35.0%
! GATTTTTCACCAAAATCTCC+AGG + chr1_3:74585892-74585911 None:intergenic 35.0%
TTCATGTAGTAACCTTTGTG+GGG - chr1_3:74585931-74585950 Msa0140330:CDS 35.0%
TTTCCAAATCCCTACTGAAA+CGG - chr1_3:74586035-74586054 Msa0140330:CDS 35.0%
TAAATGGCTGCATATGAATG+AGG - chr1_3:74586182-74586201 Msa0140330:five_prime_UTR 35.0%
TAATGTTATAGGTGGGGTGA+TGG - chr1_3:74581922-74581941 Msa0140330:three_prime_UTR 40.0%
AAACTAACTGGAGCTAGCAA+TGG - chr1_3:74581967-74581986 Msa0140330:three_prime_UTR 40.0%
ATAAGAGCTGGATTGTTGGA+AGG + chr1_3:74582016-74582035 None:intergenic 40.0%
!!! AGGAGCATTTGGTTTGGTTT+TGG + chr1_3:74582080-74582099 None:intergenic 40.0%
!! AGAAGGGATTTTGTGCTGTT+AGG - chr1_3:74582144-74582163 Msa0140330:three_prime_UTR 40.0%
! ACAACATGCGTTCCTTTTTC+TGG - chr1_3:74582189-74582208 Msa0140330:three_prime_UTR 40.0%
GCAAAGTCAGTCTCAATTGT+AGG + chr1_3:74582245-74582264 None:intergenic 40.0%
TATTCTGTCTTGTCTTGCAG+TGG - chr1_3:74582265-74582284 Msa0140330:CDS 40.0%
ACTTCAACAAGACCCCAAAA+TGG - chr1_3:74582307-74582326 Msa0140330:CDS 40.0%
!!! CCCCAAAATGGCTTCTTTTT+TGG - chr1_3:74582319-74582338 Msa0140330:intron 40.0%
!! TTTTAGAGGGAAGCTCAAGA+GGG + chr1_3:74582373-74582392 None:intergenic 40.0%
!! TTTTTAGAGGGAAGCTCAAG+AGG + chr1_3:74582374-74582393 None:intergenic 40.0%
CTACATGAAAGTGGGAAAAG+AGG + chr1_3:74582550-74582569 None:intergenic 40.0%
CTCTTCTCTCTACATGAAAG+TGG + chr1_3:74582559-74582578 None:intergenic 40.0%
GGCTTGTAGATTCTGTAGTA+AGG - chr1_3:74582581-74582600 Msa0140330:intron 40.0%
AAGGAGAGTAGATTAGATGG+AGG - chr1_3:74582600-74582619 Msa0140330:intron 40.0%
CTTATCCCATTAAGTGTGGT+CGG + chr1_3:74582728-74582747 None:intergenic 40.0%
GGCAAGAGAGAAAACAAAAC+AGG + chr1_3:74582773-74582792 None:intergenic 40.0%
TTCTCTCTTGCCATCCAAAA+AGG - chr1_3:74582781-74582800 Msa0140330:intron 40.0%
TAATGCTTTGGCCATAGATG+TGG - chr1_3:74583065-74583084 Msa0140330:intron 40.0%
AATGCTTTGGCCATAGATGT+GGG - chr1_3:74583066-74583085 Msa0140330:intron 40.0%
AAAACTTGCAGGCAACAAGA+GGG + chr1_3:74583143-74583162 None:intergenic 40.0%
GATAAACTCTTGCCTTGCAA+AGG + chr1_3:74583276-74583295 None:intergenic 40.0%
CAATCTCATCATTTCCGTCA+CGG - chr1_3:74583566-74583585 Msa0140330:intron 40.0%
AGATTGAGGAAATACCGTGA+CGG + chr1_3:74583583-74583602 None:intergenic 40.0%
GAGGGCCTATCTGAATTTAA+TGG + chr1_3:74583669-74583688 None:intergenic 40.0%
! ATGGACTGCAAAAGATGTTG+TGG - chr1_3:74583726-74583745 Msa0140330:intron 40.0%
ACAGACCAGAGAGTTAAGAA+TGG - chr1_3:74584081-74584100 Msa0140330:intron 40.0%
TCCAACTGTTTACGTCACAA+AGG - chr1_3:74584373-74584392 Msa0140330:CDS 40.0%
ACCTTTGTGACGTAAACAGT+TGG + chr1_3:74584377-74584396 None:intergenic 40.0%
GGATTTACACTACAGATCAC+AGG + chr1_3:74584406-74584425 None:intergenic 40.0%
ATTGTCTCCTCACAGATTGA+AGG - chr1_3:74584751-74584770 Msa0140330:intron 40.0%
TACTTTGGACTTGTGACTGA+TGG - chr1_3:74584886-74584905 Msa0140330:CDS 40.0%
GTTGTACAGTCTGAAGAATC+AGG - chr1_3:74584908-74584927 Msa0140330:CDS 40.0%
CTGTTGAAGCAACATAATGC+CGG + chr1_3:74584940-74584959 None:intergenic 40.0%
!!! TTTTTTCCACTGTGGACTGA+GGG + chr1_3:74585288-74585307 None:intergenic 40.0%
AATCTCCAGGGATCTTTGTA+TGG + chr1_3:74585879-74585898 None:intergenic 40.0%
! ACAAAGATCCCTGGAGATTT+TGG - chr1_3:74585880-74585899 Msa0140330:intron 40.0%
ACATGAATTTCACCCCACAA+AGG + chr1_3:74585946-74585965 None:intergenic 40.0%
AAGAGACAACCGTTTCAGTA+GGG + chr1_3:74586047-74586066 None:intergenic 40.0%
AAAGAGACAACCGTTTCAGT+AGG + chr1_3:74586048-74586067 None:intergenic 40.0%
ACTGAAACGGTTGTCTCTTT+AGG - chr1_3:74586048-74586067 Msa0140330:CDS 40.0%
CTGAAACGGTTGTCTCTTTA+GGG - chr1_3:74586049-74586068 Msa0140330:CDS 40.0%
!! TATAGGTGGGGTGATGGAAT+TGG - chr1_3:74581928-74581947 Msa0140330:three_prime_UTR 45.0%
TGGAATTGGAAATCGCGAAG+TGG - chr1_3:74581942-74581961 Msa0140330:three_prime_UTR 45.0%
GGATTACCCTCCTGAAGATA+AGG + chr1_3:74582053-74582072 None:intergenic 45.0%
!! GTTGGAAGGAGCATTTGGTT+TGG + chr1_3:74582086-74582105 None:intergenic 45.0%
!! GGATTGTTGGAAGGAGCATT+TGG + chr1_3:74582091-74582110 None:intergenic 45.0%
!! AGGGATTTTGTGCTGTTAGG+AGG - chr1_3:74582147-74582166 Msa0140330:three_prime_UTR 45.0%
ATGTAGCCGACCACACTTAA+TGG - chr1_3:74582719-74582738 Msa0140330:intron 45.0%
TGTAGCCGACCACACTTAAT+GGG - chr1_3:74582720-74582739 Msa0140330:intron 45.0%
CACTAGTGATCCCACATCTA+TGG + chr1_3:74583079-74583098 None:intergenic 45.0%
AAACTTGCAGGCAACAAGAG+GGG + chr1_3:74583142-74583161 None:intergenic 45.0%
GAAAACTTGCAGGCAACAAG+AGG + chr1_3:74583144-74583163 None:intergenic 45.0%
AATTCCTTGCAGCTAATGCG+CGG - chr1_3:74583508-74583527 Msa0140330:intron 45.0%
! AGTAGCTATCGGGTATTGCT+CGG + chr1_3:74583846-74583865 None:intergenic 45.0%
TGCATCGAGAACTGAACTCT+CGG + chr1_3:74584490-74584509 None:intergenic 45.0%
AGATTGAAGGCGAACCTTAC+TGG - chr1_3:74584764-74584783 Msa0140330:intron 45.0%
GCTTCAACAGCAGAAAGAGA+TGG - chr1_3:74584950-74584969 Msa0140330:intron 45.0%
TGACTCTGATTGAAGGGAAG+AGG + chr1_3:74585105-74585124 None:intergenic 45.0%
!!! CTTTTTTCCACTGTGGACTG+AGG + chr1_3:74585289-74585308 None:intergenic 45.0%
!!! GAGGGTACTTTTTTCCACTG+TGG + chr1_3:74585296-74585315 None:intergenic 45.0%
CTCTCTCTCTCTCTCTCATA+TGG - chr1_3:74585335-74585354 Msa0140330:intron 45.0%
TTCCTCCATACAAAGATCCC+TGG - chr1_3:74585871-74585890 Msa0140330:intron 45.0%
CAACCGTTTCAGTAGGGATT+TGG + chr1_3:74586041-74586060 None:intergenic 45.0%
!! AAAATAATAAATATTTGTAT+TGG - chr1_3:74585176-74585195 Msa0140330:intron 5.0%
CGCGAAGTGGTGAAACTAAC+TGG - chr1_3:74581955-74581974 Msa0140330:three_prime_UTR 50.0%
!! AGCTTGTTGCCCGCTTAAAC+TGG - chr1_3:74582815-74582834 Msa0140330:intron 50.0%
GCAGCCGATGAATATCGTTC+TGG + chr1_3:74583225-74583244 None:intergenic 50.0%
! TAGCTATCGGGTATTGCTCG+GGG + chr1_3:74583844-74583863 None:intergenic 50.0%
! GTAGCTATCGGGTATTGCTC+GGG + chr1_3:74583845-74583864 None:intergenic 50.0%
GGGCACCATTCTTAACTCTC+TGG + chr1_3:74584089-74584108 None:intergenic 50.0%
GTTAAGAATGGTGCCCCACA+TGG - chr1_3:74584093-74584112 Msa0140330:intron 50.0%
ACATGCTCACGTGTCTGTGT+TGG + chr1_3:74584558-74584577 None:intergenic 50.0%
AGGTTCGCCTTCAATCTGTG+AGG + chr1_3:74584761-74584780 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGAGA+GGG + chr1_3:74585314-74585333 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG + chr1_3:74585313-74585332 None:intergenic 50.0%
TAGACGCAGTTGATCAGTGG+CGG + chr1_3:74585447-74585466 None:intergenic 50.0%
AGCTAGACGCAGTTGATCAG+TGG + chr1_3:74585450-74585469 None:intergenic 50.0%
CTCCAGGGATCTTTGTATGG+AGG + chr1_3:74585876-74585895 None:intergenic 50.0%
TGTCTTGCAGTGGCTCTTGC+TGG - chr1_3:74582275-74582294 Msa0140330:CDS 55.0%
TGCCATCCAAAAAGGCCCAG+CGG - chr1_3:74582789-74582808 Msa0140330:intron 55.0%
! ATCAGTGGCGGAGGAAATGC+TGG + chr1_3:74585435-74585454 None:intergenic 55.0%
!! ACTGAGGGTCGAAGCGCTGA+TGG + chr1_3:74585273-74585292 None:intergenic 60.0%
CTTCGACCCTCAGTCCACAG+TGG - chr1_3:74585279-74585298 Msa0140330:intron 60.0%
ACGCAGTTGATCAGTGGCGG+AGG + chr1_3:74585444-74585463 None:intergenic 60.0%
! CGCCGCTGGGCCTTTTTGGA+TGG + chr1_3:74582794-74582813 None:intergenic 65.0%
GCAGCCGCGCATTAGCTGCA+AGG + chr1_3:74583515-74583534 None:intergenic 65.0%
!! CTCGGCTGAGCGCTGAACTG+AGG + chr1_3:74584472-74584491 None:intergenic 65.0%
! GCTGCGCCGCTGGGCCTTTT+TGG + chr1_3:74582798-74582817 None:intergenic 70.0%
GGGCAACAAGCTGCGCCGCT+GGG + chr1_3:74582807-74582826 None:intergenic 70.0%
CGGGCAACAAGCTGCGCCGC+TGG + chr1_3:74582808-74582827 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 74581922 74586212 74581922 ID=Msa0140330;Name=Msa0140330
chr1_3 mRNA 74581922 74586212 74581922 ID=Msa0140330-mRNA-1;Parent=Msa0140330;Name=Msa0140330-mRNA-1;_AED=0.18;_eAED=0.18;_QI=81|1|1|1|0.9|0.81|11|281|290
chr1_3 exon 74581922 74582016 74581922 ID=Msa0140330-mRNA-1:exon:26003;Parent=Msa0140330-mRNA-1
chr1_3 exon 74582043 74582327 74582043 ID=Msa0140330-mRNA-1:exon:26002;Parent=Msa0140330-mRNA-1
chr1_3 exon 74582827 74582876 74582827 ID=Msa0140330-mRNA-1:exon:26001;Parent=Msa0140330-mRNA-1
chr1_3 exon 74583163 74583217 74583163 ID=Msa0140330-mRNA-1:exon:26000;Parent=Msa0140330-mRNA-1
chr1_3 exon 74583309 74583368 74583309 ID=Msa0140330-mRNA-1:exon:25999;Parent=Msa0140330-mRNA-1
chr1_3 exon 74583613 74583672 74583613 ID=Msa0140330-mRNA-1:exon:25998;Parent=Msa0140330-mRNA-1
chr1_3 exon 74584357 74584455 74584357 ID=Msa0140330-mRNA-1:exon:25997;Parent=Msa0140330-mRNA-1
chr1_3 exon 74584547 74584614 74584547 ID=Msa0140330-mRNA-1:exon:25996;Parent=Msa0140330-mRNA-1
chr1_3 exon 74584879 74584928 74584879 ID=Msa0140330-mRNA-1:exon:25995;Parent=Msa0140330-mRNA-1
chr1_3 exon 74585726 74585849 74585726 ID=Msa0140330-mRNA-1:exon:25994;Parent=Msa0140330-mRNA-1
chr1_3 exon 74585924 74586212 74585924 ID=Msa0140330-mRNA-1:exon:25993;Parent=Msa0140330-mRNA-1
chr1_3 five_prime_UTR 74586132 74586212 74586132 ID=Msa0140330-mRNA-1:five_prime_utr;Parent=Msa0140330-mRNA-1
chr1_3 CDS 74585924 74586131 74585924 ID=Msa0140330-mRNA-1:cds;Parent=Msa0140330-mRNA-1
chr1_3 CDS 74585726 74585849 74585726 ID=Msa0140330-mRNA-1:cds;Parent=Msa0140330-mRNA-1
chr1_3 CDS 74584879 74584928 74584879 ID=Msa0140330-mRNA-1:cds;Parent=Msa0140330-mRNA-1
chr1_3 CDS 74584547 74584614 74584547 ID=Msa0140330-mRNA-1:cds;Parent=Msa0140330-mRNA-1
chr1_3 CDS 74584357 74584455 74584357 ID=Msa0140330-mRNA-1:cds;Parent=Msa0140330-mRNA-1
chr1_3 CDS 74583613 74583672 74583613 ID=Msa0140330-mRNA-1:cds;Parent=Msa0140330-mRNA-1
chr1_3 CDS 74583309 74583368 74583309 ID=Msa0140330-mRNA-1:cds;Parent=Msa0140330-mRNA-1
chr1_3 CDS 74583163 74583217 74583163 ID=Msa0140330-mRNA-1:cds;Parent=Msa0140330-mRNA-1
chr1_3 CDS 74582827 74582876 74582827 ID=Msa0140330-mRNA-1:cds;Parent=Msa0140330-mRNA-1
chr1_3 CDS 74582229 74582327 74582229 ID=Msa0140330-mRNA-1:cds;Parent=Msa0140330-mRNA-1
chr1_3 three_prime_UTR 74582043 74582228 74582043 ID=Msa0140330-mRNA-1:three_prime_utr;Parent=Msa0140330-mRNA-1
chr1_3 three_prime_UTR 74581922 74582016 74581922 ID=Msa0140330-mRNA-1:three_prime_utr;Parent=Msa0140330-mRNA-1
Gene Sequence

>Msa0140330

ATGGCTATGTCCTTCCAACAATCCAGCTCTTATTCTTCCAATAACAACCTTATCTTCAGGAGGGTAATCCTTAACCAAAACCAAACCAAATGCTCCTTCCAACAATCCGATGATAAAAGAGATTTTTCATCATCTTCTTCTAGAAGGGATTTTGTGCTGTTAGGAGGCCTCACTTCACTATCTCTAACAACATGCGTTCCTTTTTCTGTGGCTCTTGCTGGAGATGAAGAACTTCAACAAGACCCCAAAATGGCTTCTTTTTTGGATGAAGTCAATGCCTATTCTTATCTTTACCCTCTTGAGCTTCCCTCTAAAAATTTTGTCTTCAAATGGGTAGAATCTCGAAAGCCAGAACGATATTCATCGGCTGCACCACTTTCTCCTAATGCGCGGCTGCGTATTGTGTCTGAACGTGTTGATCTCTTTGACAATCTCATCATTTCCGTCACGATAGGCCCTCCAAGTGCAAACCTTATAAACTTGAAGGATAAGAGCAAATGGACTGCAAAAGATGTTGTGGATTCAGTTTTAGCTGACAAATCTTCACTCCGAGTTACCTCAGTTCAGCGCTCAGCCGAGAGTTCAGTTCTCGATGCACATTCTGATGAAATTGAAGGCGAACCTTACTGGTATTATGAATACCTCATTCGTAAATCACCTAATTCAATGTCTGAAGAATCAGGAATTTACCGGCATTATGTTGCTTCAACAGCAGAAAGAGATGGTTATTTGTACTCCATCAGCGCTTCGACCCTCAGTCCACAGTGGAAAAAAATGGGGCCTTTACTTGAAAAGACTGTGAGTTCGTTTCGACTTGTCAGTCCTACAGAAAATTATGTTCCTCCATACAAAGATCCCTGGAGATTTTGGTGA

Protein sequence

>Msa0140330

MAMSFQQSSSYSSNNNLIFRRVILNQNQTKCSFQQSDDKRDFSSSSSRRDFVLLGGLTSLSLTTCVPFSVALAGDEELQQDPKMASFLDEVNAYSYLYPLELPSKNFVFKWVESRKPERYSSAAPLSPNARLRIVSERVDLFDNLIISVTIGPPSANLINLKDKSKWTAKDVVDSVLADKSSLRVTSVQRSAESSVLDAHSDEIEGEPYWYYEYLIRKSPNSMSEESGIYRHYVASTAERDGYLYSISASTLSPQWKKMGPLLEKTVSSFRLVSPTENYVPPYKDPWRFW*