AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0044250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0044250 MtrunA17_Chr1g0210861 94.237 295 14 3 4 298 5 296 0.0 507
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0044250 AT4G24175.1 49.362 235 110 3 73 298 67 301 2.28e-66 210
Msa0044250 AT4G24175.2 58.197 122 45 1 73 188 67 188 5.80e-40 139

Find 81 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAACCATGCATTGTTTAAT+TGG 0.131679 1_1:-75755799 Msa0044250:three_prime_UTR
AAGCAAAACGTGCTGTTAAA+TGG 0.180888 1_1:-75758849 Msa0044250:CDS
CTTAAGTATGCGTTTGATTT+GGG 0.220486 1_1:+75758798 None:intergenic
CTGCAAGCTTTAACTGGCTT+GGG 0.238458 1_1:-75757853 Msa0044250:CDS
GGGTTGCAGGGTGGTTTCTT+TGG 0.241314 1_1:-75758698 Msa0044250:intron
GAATGTGGAACCGGAATTAA+TGG 0.241972 1_1:-75757917 Msa0044250:CDS
TTAATAACTAGAATAGTTAA+TGG 0.246308 1_1:-75755749 Msa0044250:three_prime_UTR
TTTAATTGGGATACATGATA+TGG 0.250940 1_1:-75755785 Msa0044250:three_prime_UTR
ACTTAAGTATGCGTTTGATT+TGG 0.270394 1_1:+75758797 None:intergenic
TAAGAGCTTCAAAGACAATT+TGG 0.326397 1_1:+75758674 None:intergenic
AAGGAGCTGCAAGCTTTAAC+TGG 0.329869 1_1:-75757859 Msa0044250:CDS
TTAAAGCTTGCAGCTCCTTA+TGG 0.340886 1_1:+75757863 None:intergenic
TGAAGCTCTTATGTTGGTTA+AGG 0.347145 1_1:-75758662 Msa0044250:intron
ATTAATCCGTCCATTAATTC+CGG 0.350389 1_1:+75757907 None:intergenic
TTGAACTGAATAAACTTCAT+TGG 0.358907 1_1:+75756522 None:intergenic
CGTATCTTTGTGGATTGTTC+TGG 0.359479 1_1:+75758994 None:intergenic
AATGAAGTTTATTCAGTTCA+AGG 0.362430 1_1:-75756520 Msa0044250:CDS
CAAGTAACAAGGTGGTTTGA+TGG 0.384351 1_1:-75756571 Msa0044250:CDS
AAGTCGAGAAAGCAGAGATT+AGG 0.387346 1_1:-75755892 Msa0044250:CDS
AGCAAAACGTGCTGTTAAAT+GGG 0.390825 1_1:-75758848 Msa0044250:CDS
TAACCATGCATTGTTTAATT+GGG 0.393245 1_1:-75755798 Msa0044250:three_prime_UTR
AGTCGAGAAAGCAGAGATTA+GGG 0.396363 1_1:-75755891 Msa0044250:CDS
GTTACTTGACTATCATCATA+AGG 0.403754 1_1:+75756586 None:intergenic
GCTGCAAGCTTTAACTGGCT+TGG 0.428841 1_1:-75757854 Msa0044250:CDS
TTCTTCTTCTTCCTCGGGAG+CGG 0.442048 1_1:+75758912 None:intergenic
TTCTTCTTCCTCGGGAGCGG+TGG 0.451245 1_1:+75758915 None:intergenic
CTTCACGCTTCAATTGGTTG+CGG 0.456802 1_1:+75758869 None:intergenic
TCATCATCCTCAGGATCATC+AGG 0.461465 1_1:+75757829 None:intergenic
CGGCGTCAGTTCAATTATAT+AGG 0.461984 1_1:-75758491 Msa0044250:intron
TTGTCTCAGGAAAGTTGTTA+CGG 0.463853 1_1:-75757939 Msa0044250:intron
GATTGTTCTGGTGATGATGT+TGG 0.469722 1_1:+75759006 None:intergenic
AACAAAGGATTCTGACCATA+AGG 0.472766 1_1:-75757878 Msa0044250:CDS
CGGATGTTCGTGAAGGGAGG+CGG 0.476758 1_1:-75758511 Msa0044250:CDS
TGAGCCAACAAGTAGTATTA+CGG 0.477051 1_1:-75759131 Msa0044250:CDS
CGCCTCCCTTCACGAACATC+CGG 0.479937 1_1:+75758512 None:intergenic
TTTGATTTGGGGAGGAGAGA+AGG 0.481642 1_1:+75758810 None:intergenic
AGCAGAGATTAGGGCTAAGA+AGG 0.485364 1_1:-75755882 Msa0044250:CDS
AGAGAAACGACGTATCTTTG+TGG 0.489110 1_1:+75758984 None:intergenic
GTTGTTACGGAATGTGGAAC+CGG 0.489775 1_1:-75757926 Msa0044250:CDS
AGCCATGGCCAATGTCTTAG+AGG 0.494965 1_1:+75759108 None:intergenic
TATTACGGCCTCTAAGACAT+TGG 0.496331 1_1:-75759116 Msa0044250:CDS
AGGAAAGTTGTTACGGAATG+TGG 0.498289 1_1:-75757932 Msa0044250:CDS
GAGGCCGTAATACTACTTGT+TGG 0.504889 1_1:+75759127 None:intergenic
AATTTAGTAGTAGAAGAAGT+AGG 0.506275 1_1:+75759060 None:intergenic
TGCAAGCTTTAACTGGCTTG+GGG 0.514688 1_1:-75757852 Msa0044250:CDS
TCTTCTTCCTCGGGAGCGGT+GGG 0.518718 1_1:+75758916 None:intergenic
TTTGCAGGAGTTGAGAAAGC+TGG 0.520673 1_1:-75755972 Msa0044250:intron
TGTCTTTGAAGCTCTTATGT+TGG 0.520855 1_1:-75758668 Msa0044250:CDS
AGGTGTCGAGTATGATCGCC+AGG 0.526328 1_1:-75756500 Msa0044250:intron
AAGAAGTAGGATGGTGGTGG+TGG 0.528471 1_1:+75759073 None:intergenic
AAGTTCTCATCATCATCCTC+AGG 0.534020 1_1:+75757820 None:intergenic
TAGTAGTAGAAGAAGTAGGA+TGG 0.547453 1_1:+75759064 None:intergenic
ACGTGCTGTTAAATGGGGAA+TGG 0.548665 1_1:-75758842 Msa0044250:CDS
TAGTAGAAGAAGTAGGATGG+TGG 0.552386 1_1:+75759067 None:intergenic
CGGATTAATAAAAGCAACAA+AGG 0.558941 1_1:-75757893 Msa0044250:CDS
TGGTGAAAGCGCAACAGCCA+TGG 0.562393 1_1:+75759093 None:intergenic
TATCCCAATTAAACAATGCA+TGG 0.568035 1_1:+75755795 None:intergenic
TAGAAGAAGTAGGATGGTGG+TGG 0.571214 1_1:+75759070 None:intergenic
TGGGGCCGGATGTTCGTGAA+GGG 0.573714 1_1:-75758517 Msa0044250:CDS
TTTGCCACAGAGAATGGGGC+CGG 0.574948 1_1:-75758531 Msa0044250:intron
TTAAGTATGCGTTTGATTTG+GGG 0.578299 1_1:+75758799 None:intergenic
GGCCGGATGTTCGTGAAGGG+AGG 0.578608 1_1:-75758514 Msa0044250:CDS
CTTGGGGCCTGATGATCCTG+AGG 0.584420 1_1:-75757836 Msa0044250:CDS
TTCATTACCCACCGCTCCCG+AGG 0.585183 1_1:-75758923 Msa0044250:CDS
CAATATTCTCTGAAAGACTA+CGG 0.592264 1_1:+75755843 None:intergenic
TGCTCAAGAAACGAAGGCTA+CGG 0.598891 1_1:-75755933 Msa0044250:CDS
GGCCTCTAAGACATTGGCCA+TGG 0.604231 1_1:-75759110 Msa0044250:CDS
AGTATGCGTTTGATTTGGGG+AGG 0.608860 1_1:+75758802 None:intergenic
GATAGAAACTGAAGACGAGA+AGG 0.608891 1_1:-75757797 Msa0044250:CDS
TTCTCTTTATCTGCATCTCG+CGG 0.612272 1_1:-75758967 Msa0044250:CDS
GAAGGCTACGGATGAAGAAG+AGG 0.613694 1_1:-75755921 Msa0044250:CDS
ATGGGGCCGGATGTTCGTGA+AGG 0.614685 1_1:-75758518 Msa0044250:CDS
TGAAGACGAGAAGGATGATG+AGG 0.623936 1_1:-75757788 Msa0044250:intron
GTTTGATGGTTTGATCAACA+AGG 0.631366 1_1:-75756557 Msa0044250:CDS
GCAAAACGTGCTGTTAAATG+GGG 0.636327 1_1:-75758847 Msa0044250:CDS
ACTACGGAGAAAACGAGTGA+GGG 0.650965 1_1:+75755859 None:intergenic
GTGGAACCGGAATTAATGGA+CGG 0.654248 1_1:-75757913 Msa0044250:CDS
GCACTTTGCTCAAGAAACGA+AGG 0.664552 1_1:-75755939 Msa0044250:CDS
GACTACGGAGAAAACGAGTG+AGG 0.672547 1_1:+75755858 None:intergenic
ATGATGATAGTCAAGTAACA+AGG 0.710187 1_1:-75756582 Msa0044250:CDS
ATGATAGTCAAGTAACAAGG+TGG 0.715164 1_1:-75756579 Msa0044250:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGTTTATAATAAAACATTA+TGG + chr1_1:75757159-75757178 None:intergenic 10.0%
!! TTAACACAATAATAAATATT+AGG - chr1_1:75757477-75757496 Msa0044250:intron 10.0%
!! TAACACAATAATAAATATTA+GGG - chr1_1:75757478-75757497 Msa0044250:intron 10.0%
!!! AACAATTTTATTGAAATATT+GGG + chr1_1:75757726-75757745 None:intergenic 10.0%
!! AAATATTAGATTATATTGTA+TGG + chr1_1:75758452-75758471 None:intergenic 10.0%
!! AAAAAATCATATATATTTAG+AGG - chr1_1:75758782-75758801 Msa0044250:intron 10.0%
!!! TTTTTGCTAAATTTTGTTTT+TGG - chr1_1:75756125-75756144 Msa0044250:intron 15.0%
!!! TTTTGCTAAATTTTGTTTTT+GGG - chr1_1:75756126-75756145 Msa0044250:intron 15.0%
!!! TGATGGTTAAAAATTTTATA+GGG - chr1_1:75757383-75757402 Msa0044250:intron 15.0%
!!! TATTGTGTTAAATATGTTTT+AGG + chr1_1:75757468-75757487 None:intergenic 15.0%
!! AACACAATAATAAATATTAG+GGG - chr1_1:75757479-75757498 Msa0044250:intron 15.0%
!!! GAACAATTTTATTGAAATAT+TGG + chr1_1:75757727-75757746 None:intergenic 15.0%
!! TTAATAACTAGAATAGTTAA+TGG - chr1_1:75759095-75759114 Msa0044250:CDS 15.0%
!!! AAGTTGAAACTTTTCAAAAT+GGG + chr1_1:75756107-75756126 None:intergenic 20.0%
!!! AAAGTTGAAACTTTTCAAAA+TGG + chr1_1:75756108-75756127 None:intergenic 20.0%
!! ATTTCAAGATGAAAAAGAAA+AGG + chr1_1:75756214-75756233 None:intergenic 20.0%
!!! AAACAACTATTTTATGCAAT+TGG - chr1_1:75756681-75756700 Msa0044250:intron 20.0%
!! ATAATTAATGCAACACAAAT+TGG + chr1_1:75756745-75756764 None:intergenic 20.0%
!!! TAAGTTGATTAGAATTATTG+TGG - chr1_1:75756828-75756847 Msa0044250:intron 20.0%
!!! ACATGAATTGACTTAAAAAT+AGG - chr1_1:75757351-75757370 Msa0044250:intron 20.0%
!!! CATGAATTGACTTAAAAATA+GGG - chr1_1:75757352-75757371 Msa0044250:intron 20.0%
!!! AAATTTTTAACCATCACTTT+TGG + chr1_1:75757379-75757398 None:intergenic 20.0%
!!! GTGATGGTTAAAAATTTTAT+AGG - chr1_1:75757382-75757401 Msa0044250:intron 20.0%
!!! TGAAAAGTTGGTATATTTAT+AGG - chr1_1:75757440-75757459 Msa0044250:intron 20.0%
!!! GAAAAGTTGGTATATTTATA+GGG - chr1_1:75757441-75757460 Msa0044250:intron 20.0%
!!! AAGTTAGTTTGTTTGTTATT+TGG - chr1_1:75757516-75757535 Msa0044250:intron 20.0%
!!! AGTTAGTTTGTTTGTTATTT+GGG - chr1_1:75757517-75757536 Msa0044250:intron 20.0%
!!! TTTTATTGAAATATTGGGAA+AGG + chr1_1:75757721-75757740 None:intergenic 20.0%
!! AAAAGATAAGATACATCATA+AGG + chr1_1:75758215-75758234 None:intergenic 20.0%
!! AAATTTCTTTCTCATTATGA+AGG - chr1_1:75758685-75758704 Msa0044250:CDS 20.0%
! AATTTAGTAGTAGAAGAAGT+AGG + chr1_1:75755787-75755806 None:intergenic 25.0%
! ACACATTTAAATCAGTAAAG+CGG - chr1_1:75756438-75756457 Msa0044250:intron 25.0%
! AAAAATGGTACTATAAGCTA+AGG + chr1_1:75756783-75756802 None:intergenic 25.0%
! TGAATGACTATCAACAAAAA+TGG + chr1_1:75756798-75756817 None:intergenic 25.0%
! ATATAATTTGATCCATGTAG+CGG + chr1_1:75757135-75757154 None:intergenic 25.0%
! AAAACTATCAGAGAAAGATT+TGG + chr1_1:75757206-75757225 None:intergenic 25.0%
!!! ATTGGTCTTCTAATCTTTTT+TGG - chr1_1:75757276-75757295 Msa0044250:intron 25.0%
!!! TTGGTCTTCTAATCTTTTTT+GGG - chr1_1:75757277-75757296 Msa0044250:intron 25.0%
! TAGAGAGTAAAATGAAAAGT+TGG - chr1_1:75757428-75757447 Msa0044250:intron 25.0%
!! TATGTTAGGAACATTTCTTT+TGG + chr1_1:75757795-75757814 None:intergenic 25.0%
! GTGTTTGATTGTATAGTTAA+AGG - chr1_1:75757834-75757853 Msa0044250:CDS 25.0%
! TATAGTTAAAGGTGAGTTAA+AGG - chr1_1:75757845-75757864 Msa0044250:CDS 25.0%
! GTTAAAGGCAAAATGATTTA+TGG - chr1_1:75757860-75757879 Msa0044250:CDS 25.0%
! TTGAGTATAAAAGTTACCTT+TGG - chr1_1:75757921-75757940 Msa0044250:CDS 25.0%
!!! TGAAGAATTGAAGTTGATTT+TGG + chr1_1:75758028-75758047 None:intergenic 25.0%
! TAGGAAATTTAGTGCATATT+TGG + chr1_1:75758081-75758100 None:intergenic 25.0%
!! TATCTTTTGAGCATTTTATC+AGG - chr1_1:75758227-75758246 Msa0044250:intron 25.0%
! TTGAACTGAATAAACTTCAT+TGG + chr1_1:75758325-75758344 None:intergenic 25.0%
! AATGAAGTTTATTCAGTTCA+AGG - chr1_1:75758324-75758343 Msa0044250:intron 25.0%
! TCAACCAAGTTTATATTACT+TGG - chr1_1:75758472-75758491 Msa0044250:intron 25.0%
! TTCACCAAGTAATATAAACT+TGG + chr1_1:75758479-75758498 None:intergenic 25.0%
! TCAACCAAGTTTATATTAAC+TGG - chr1_1:75758601-75758620 Msa0044250:intron 25.0%
! TTCACCAGTTAATATAAACT+TGG + chr1_1:75758608-75758627 None:intergenic 25.0%
! TTTATGTGATTCCTATCAAA+TGG - chr1_1:75758629-75758648 Msa0044250:intron 25.0%
!! AAAATATCTTCATCTTTTGC+AGG - chr1_1:75758857-75758876 Msa0044250:CDS 25.0%
! TTAACCATGCATTGTTTAAT+TGG - chr1_1:75759045-75759064 Msa0044250:CDS 25.0%
! TAACCATGCATTGTTTAATT+GGG - chr1_1:75759046-75759065 Msa0044250:CDS 25.0%
! TTTAATTGGGATACATGATA+TGG - chr1_1:75759059-75759078 Msa0044250:CDS 25.0%
!! TTAAGTATGCGTTTGATTTG+GGG + chr1_1:75756048-75756067 None:intergenic 30.0%
! CTTAAGTATGCGTTTGATTT+GGG + chr1_1:75756049-75756068 None:intergenic 30.0%
ACTTAAGTATGCGTTTGATT+TGG + chr1_1:75756050-75756069 None:intergenic 30.0%
!!! AAATTTTGTTTTTGGGTTGC+AGG - chr1_1:75756133-75756152 Msa0044250:intron 30.0%
!!! AATTTTGTTTTTGGGTTGCA+GGG - chr1_1:75756134-75756153 Msa0044250:intron 30.0%
TAAGAGCTTCAAAGACAATT+TGG + chr1_1:75756173-75756192 None:intergenic 30.0%
AATTGTTCTATTTGTGCTTG+TGG - chr1_1:75756237-75756256 Msa0044250:intron 30.0%
GTGAAAGTTTAATGAAGAGA+AGG - chr1_1:75756280-75756299 Msa0044250:intron 30.0%
ATGTACTAAATATCGTCTTG+TGG + chr1_1:75756597-75756616 None:intergenic 30.0%
GTGTTGCATTAATTATGAGT+TGG - chr1_1:75756749-75756768 Msa0044250:intron 30.0%
TGATAGTCATTCAATAGATG+TGG - chr1_1:75756805-75756824 Msa0044250:intron 30.0%
CATACATAAATTGTTGTCTC+AGG - chr1_1:75756892-75756911 Msa0044250:intron 30.0%
ATTAATCCGTCCATTAATTC+CGG + chr1_1:75756940-75756959 None:intergenic 30.0%
CGGATTAATAAAAGCAACAA+AGG - chr1_1:75756951-75756970 Msa0044250:intron 30.0%
CTCCTTACTACATAATCTAT+TGG - chr1_1:75757258-75757277 Msa0044250:intron 30.0%
GACCAATAGATTATGTAGTA+AGG + chr1_1:75757263-75757282 None:intergenic 30.0%
! GTTGTTGTTATGAGTTGTTA+GGG - chr1_1:75757539-75757558 Msa0044250:intron 30.0%
AGGGAAGTTAGTTAGTTATT+TGG - chr1_1:75757558-75757577 Msa0044250:intron 30.0%
GTGCAGAATTGAATAAACAA+AGG + chr1_1:75757749-75757768 None:intergenic 30.0%
TAGACATGAACTCATATGTT+AGG + chr1_1:75757809-75757828 None:intergenic 30.0%
AAGGCAAAATGATTTATGGT+TGG - chr1_1:75757864-75757883 Msa0044250:CDS 30.0%
AGTATAAAAGTTACCTTTGG+AGG - chr1_1:75757924-75757943 Msa0044250:CDS 30.0%
CAAGTTAGAATCAGTTATAG+AGG - chr1_1:75757969-75757988 Msa0044250:intron 30.0%
! AGGCTAAATCAATTTTTGTC+AGG - chr1_1:75757989-75758008 Msa0044250:intron 30.0%
!! AGGAGATAAAGGTATTTATG+CGG + chr1_1:75758120-75758139 None:intergenic 30.0%
CTTTATCTCCTGTCATATTA+GGG - chr1_1:75758129-75758148 Msa0044250:intron 30.0%
TTTATCTCCTGTCATATTAG+GGG - chr1_1:75758130-75758149 Msa0044250:intron 30.0%
GTTACTTGACTATCATCATA+AGG + chr1_1:75758261-75758280 None:intergenic 30.0%
ATGATGATAGTCAAGTAACA+AGG - chr1_1:75758262-75758281 Msa0044250:intron 30.0%
TTCTGAACAAGACTAATTAC+TGG - chr1_1:75758422-75758441 Msa0044250:intron 30.0%
! CAATATTCTCTGAAAGACTA+CGG + chr1_1:75759004-75759023 None:intergenic 30.0%
TATCCCAATTAAACAATGCA+TGG + chr1_1:75759052-75759071 None:intergenic 30.0%
!!! CCTAGCACAAATATTTTTAG+AGG + chr1_1:75759165-75759184 None:intergenic 30.0%
TGAGCCAACAAGTAGTATTA+CGG - chr1_1:75755713-75755732 Msa0044250:three_prime_UTR 35.0%
TAGTAGTAGAAGAAGTAGGA+TGG + chr1_1:75755783-75755802 None:intergenic 35.0%
ATCTTCTTCTTCTTCTTCCT+CGG + chr1_1:75755941-75755960 None:intergenic 35.0%
! AAGCAAAACGTGCTGTTAAA+TGG - chr1_1:75755995-75756014 Msa0044250:intron 35.0%
! AGCAAAACGTGCTGTTAAAT+GGG - chr1_1:75755996-75756015 Msa0044250:intron 35.0%
!! TGTCTTTGAAGCTCTTATGT+TGG - chr1_1:75756176-75756195 Msa0044250:intron 35.0%
! TGAAGCTCTTATGTTGGTTA+AGG - chr1_1:75756182-75756201 Msa0044250:intron 35.0%
CATTTAAATCAGTAAAGCGG+AGG - chr1_1:75756441-75756460 Msa0044250:intron 35.0%
TAATGCAACATGCATACATG+AGG - chr1_1:75756480-75756499 Msa0044250:intron 35.0%
AAATCAGTGTTGTCAAACAG+CGG - chr1_1:75756529-75756548 Msa0044250:CDS 35.0%
TTGTCTCAGGAAAGTTGTTA+CGG - chr1_1:75756905-75756924 Msa0044250:intron 35.0%
AACAAAGGATTCTGACCATA+AGG - chr1_1:75756966-75756985 Msa0044250:intron 35.0%
AAAATAGGGACCAAAAGTGA+TGG - chr1_1:75757366-75757385 Msa0044250:intron 35.0%
TTATAGGGACTAAAAGTCGA+AGG - chr1_1:75757398-75757417 Msa0044250:intron 35.0%
! GGTTGTTGTTATGAGTTGTT+AGG - chr1_1:75757538-75757557 Msa0044250:intron 35.0%
! TTTGTAGTTTTTGCCTCCAA+AGG + chr1_1:75757940-75757959 None:intergenic 35.0%
!! GGAGATAAAGGTATTTATGC+GGG + chr1_1:75758119-75758138 None:intergenic 35.0%
CCTAATATGACAGGAGATAA+AGG + chr1_1:75758131-75758150 None:intergenic 35.0%
CCTTTATCTCCTGTCATATT+AGG - chr1_1:75758128-75758147 Msa0044250:intron 35.0%
TTATCTCCTGTCATATTAGG+GGG - chr1_1:75758131-75758150 Msa0044250:intron 35.0%
ATGATAGTCAAGTAACAAGG+TGG - chr1_1:75758265-75758284 Msa0044250:intron 35.0%
! GTTTGATGGTTTGATCAACA+AGG - chr1_1:75758287-75758306 Msa0044250:intron 35.0%
GCATAGTGCAAAATATTACC+TGG + chr1_1:75758365-75758384 None:intergenic 35.0%
GTGAAACTCACTAAAAACGT+AGG + chr1_1:75758533-75758552 None:intergenic 35.0%
AGGCTTATTCTCCATTTGAT+AGG + chr1_1:75758643-75758662 None:intergenic 35.0%
GTGAATCTCACTAAAAACGT+AGG + chr1_1:75758663-75758682 None:intergenic 35.0%
!! TATTACGGCCTCTAAGACAT+TGG - chr1_1:75755728-75755747 Msa0044250:three_prime_UTR 40.0%
TAGTAGAAGAAGTAGGATGG+TGG + chr1_1:75755780-75755799 None:intergenic 40.0%
! GATTGTTCTGGTGATGATGT+TGG + chr1_1:75755841-75755860 None:intergenic 40.0%
! CGTATCTTTGTGGATTGTTC+TGG + chr1_1:75755853-75755872 None:intergenic 40.0%
AGAGAAACGACGTATCTTTG+TGG + chr1_1:75755863-75755882 None:intergenic 40.0%
TTCTCTTTATCTGCATCTCG+CGG - chr1_1:75755877-75755896 Msa0044250:CDS 40.0%
TCTTCTTCTTCTTCTTCCTC+GGG + chr1_1:75755940-75755959 None:intergenic 40.0%
! CAATTGGTTGCGGCTTTTAA+TGG + chr1_1:75755968-75755987 None:intergenic 40.0%
! GTTTTGCTTCACGCTTCAAT+TGG + chr1_1:75755984-75756003 None:intergenic 40.0%
! GCAAAACGTGCTGTTAAATG+GGG - chr1_1:75755997-75756016 Msa0044250:intron 40.0%
!!! TGTTGTTTTGCCACAGAGAA+TGG - chr1_1:75756307-75756326 Msa0044250:intron 40.0%
!! GTTGTTTTGCCACAGAGAAT+GGG - chr1_1:75756308-75756327 Msa0044250:intron 40.0%
!! TTGTTTTGCCACAGAGAATG+GGG - chr1_1:75756309-75756328 Msa0044250:intron 40.0%
CGGCGTCAGTTCAATTATAT+AGG - chr1_1:75756353-75756372 Msa0044250:intron 40.0%
AGGAAAGTTGTTACGGAATG+TGG - chr1_1:75756912-75756931 Msa0044250:intron 40.0%
GAATGTGGAACCGGAATTAA+TGG - chr1_1:75756927-75756946 Msa0044250:intron 40.0%
TTAAAGCTTGCAGCTCCTTA+TGG + chr1_1:75756984-75757003 None:intergenic 40.0%
AAGTTCTCATCATCATCCTC+AGG + chr1_1:75757027-75757046 None:intergenic 40.0%
GATAGAAACTGAAGACGAGA+AGG - chr1_1:75757047-75757066 Msa0044250:intron 40.0%
GGATGATGAGGTATGATGTT+AGG - chr1_1:75757068-75757087 Msa0044250:intron 40.0%
TAGAGTACACTCTGTTGTGA+AGG - chr1_1:75757655-75757674 Msa0044250:intron 40.0%
AGAGTACACTCTGTTGTGAA+GGG - chr1_1:75757656-75757675 Msa0044250:intron 40.0%
GGGAAAGGATAAAAGAGAAC+AGG + chr1_1:75757706-75757725 None:intergenic 40.0%
ATTACACCCCCTAATATGAC+AGG + chr1_1:75758140-75758159 None:intergenic 40.0%
CAAGTAACAAGGTGGTTTGA+TGG - chr1_1:75758273-75758292 Msa0044250:intron 40.0%
AGGCTTACTCTCTACTTTGT+AGG + chr1_1:75758513-75758532 None:intergenic 40.0%
AAGTCGAGAAAGCAGAGATT+AGG - chr1_1:75758952-75758971 Msa0044250:CDS 40.0%
AGTCGAGAAAGCAGAGATTA+GGG - chr1_1:75758953-75758972 Msa0044250:CDS 40.0%
GAGGCCGTAATACTACTTGT+TGG + chr1_1:75755720-75755739 None:intergenic 45.0%
! TAGAAGAAGTAGGATGGTGG+TGG + chr1_1:75755777-75755796 None:intergenic 45.0%
CTTCACGCTTCAATTGGTTG+CGG + chr1_1:75755978-75755997 None:intergenic 45.0%
! ACGTGCTGTTAAATGGGGAA+TGG - chr1_1:75756002-75756021 Msa0044250:intron 45.0%
!! TTTGATTTGGGGAGGAGAGA+AGG + chr1_1:75756037-75756056 None:intergenic 45.0%
!! AGTATGCGTTTGATTTGGGG+AGG + chr1_1:75756045-75756064 None:intergenic 45.0%
!!! TTTGTTTTTGGGTTGCAGGG+TGG - chr1_1:75756137-75756156 Msa0044250:intron 45.0%
GTTGTTACGGAATGTGGAAC+CGG - chr1_1:75756918-75756937 Msa0044250:intron 45.0%
GTGGAACCGGAATTAATGGA+CGG - chr1_1:75756931-75756950 Msa0044250:intron 45.0%
! AAGGAGCTGCAAGCTTTAAC+TGG - chr1_1:75756985-75757004 Msa0044250:intron 45.0%
! CTGCAAGCTTTAACTGGCTT+GGG - chr1_1:75756991-75757010 Msa0044250:intron 45.0%
!! TGCAAGCTTTAACTGGCTTG+GGG - chr1_1:75756992-75757011 Msa0044250:intron 45.0%
TCATCATCCTCAGGATCATC+AGG + chr1_1:75757018-75757037 None:intergenic 45.0%
TGAAGACGAGAAGGATGATG+AGG - chr1_1:75757056-75757075 Msa0044250:intron 45.0%
GAGTAGATCACTAGAGACAG+AGG + chr1_1:75757239-75757258 None:intergenic 45.0%
GAGTACACTCTGTTGTGAAG+GGG - chr1_1:75757657-75757676 Msa0044250:intron 45.0%
AGGAGAGAAACTCTCCTCAA+GGG + chr1_1:75757686-75757705 None:intergenic 45.0%
! CTTGTTCAGAAAGCACAAGC+AGG + chr1_1:75758413-75758432 None:intergenic 45.0%
TTTGCAGGAGTTGAGAAAGC+TGG - chr1_1:75758872-75758891 Msa0044250:CDS 45.0%
GCACTTTGCTCAAGAAACGA+AGG - chr1_1:75758905-75758924 Msa0044250:CDS 45.0%
TGCTCAAGAAACGAAGGCTA+CGG - chr1_1:75758911-75758930 Msa0044250:CDS 45.0%
AGCAGAGATTAGGGCTAAGA+AGG - chr1_1:75758962-75758981 Msa0044250:CDS 45.0%
ACTACGGAGAAAACGAGTGA+GGG + chr1_1:75758988-75759007 None:intergenic 45.0%
!!! TTTTATTATAAACTATATTT+TGG - chr1_1:75757164-75757183 Msa0044250:intron 5.0%
AGCCATGGCCAATGTCTTAG+AGG + chr1_1:75755739-75755758 None:intergenic 50.0%
!! AAGAAGTAGGATGGTGGTGG+TGG + chr1_1:75755774-75755793 None:intergenic 50.0%
TTCTTCTTCTTCCTCGGGAG+CGG + chr1_1:75755935-75755954 None:intergenic 50.0%
! GCTGCAAGCTTTAACTGGCT+TGG - chr1_1:75756990-75757009 Msa0044250:intron 50.0%
CCACTTAGTGGGAAAAGGCT+TGG + chr1_1:75757109-75757128 None:intergenic 50.0%
! CCAAGCCTTTTCCCACTAAG+TGG - chr1_1:75757106-75757125 Msa0044250:intron 50.0%
GGACACCACTTAGTGGGAAA+AGG + chr1_1:75757114-75757133 None:intergenic 50.0%
!! TGTAGCGGACACCACTTAGT+GGG + chr1_1:75757120-75757139 None:intergenic 50.0%
!! ATGTAGCGGACACCACTTAG+TGG + chr1_1:75757121-75757140 None:intergenic 50.0%
ACTAAGTGGTGTCCGCTACA+TGG - chr1_1:75757120-75757139 Msa0044250:intron 50.0%
TTGTGAAGGGGAAACCCTTG+AGG - chr1_1:75757669-75757688 Msa0044250:intron 50.0%
CAGGAGAGAAACTCTCCTCA+AGG + chr1_1:75757687-75757706 None:intergenic 50.0%
CGGGCTCATGTCTAGTCAAT+AGG + chr1_1:75758100-75758119 None:intergenic 50.0%
! CTGAGCAGCGAACTTGTTTG+TGG + chr1_1:75758813-75758832 None:intergenic 50.0%
GAAGGCTACGGATGAAGAAG+AGG - chr1_1:75758923-75758942 Msa0044250:CDS 50.0%
GACTACGGAGAAAACGAGTG+AGG + chr1_1:75758989-75759008 None:intergenic 50.0%
!! GGCCTCTAAGACATTGGCCA+TGG - chr1_1:75755734-75755753 Msa0044250:three_prime_UTR 55.0%
! TGGTGAAAGCGCAACAGCCA+TGG + chr1_1:75755754-75755773 None:intergenic 55.0%
GGGTTGCAGGGTGGTTTCTT+TGG - chr1_1:75756146-75756165 Msa0044250:intron 55.0%
TTTGCCACAGAGAATGGGGC+CGG - chr1_1:75756313-75756332 Msa0044250:intron 55.0%
!! AGGTGTCGAGTATGATCGCC+AGG - chr1_1:75758344-75758363 Msa0044250:intron 55.0%
TTCATTACCCACCGCTCCCG+AGG - chr1_1:75755921-75755940 Msa0044250:CDS 60.0%
TCTTCTTCCTCGGGAGCGGT+GGG + chr1_1:75755931-75755950 None:intergenic 60.0%
TTCTTCTTCCTCGGGAGCGG+TGG + chr1_1:75755932-75755951 None:intergenic 60.0%
ACATCCGGCCCCATTCTCTG+TGG + chr1_1:75756320-75756339 None:intergenic 60.0%
ATGGGGCCGGATGTTCGTGA+AGG - chr1_1:75756326-75756345 Msa0044250:intron 60.0%
TGGGGCCGGATGTTCGTGAA+GGG - chr1_1:75756327-75756346 Msa0044250:intron 60.0%
CGCCTCCCTTCACGAACATC+CGG + chr1_1:75756335-75756354 None:intergenic 60.0%
CGGATGTTCGTGAAGGGAGG+CGG - chr1_1:75756333-75756352 Msa0044250:intron 60.0%
CTTGGGGCCTGATGATCCTG+AGG - chr1_1:75757008-75757027 Msa0044250:intron 60.0%
GGCCGGATGTTCGTGAAGGG+AGG - chr1_1:75756330-75756349 Msa0044250:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 75755682 75759184 75755682 ID=Msa0044250;Name=Msa0044250
chr1_1 mRNA 75755682 75759184 75755682 ID=Msa0044250-mRNA-1;Parent=Msa0044250;Name=Msa0044250-mRNA-1;_AED=0.09;_eAED=0.09;_QI=30|1|1|1|1|1|6|147|298
chr1_1 exon 75755682 75755987 75755682 ID=Msa0044250-mRNA-1:exon:25637;Parent=Msa0044250-mRNA-1
chr1_1 exon 75756501 75756617 75756501 ID=Msa0044250-mRNA-1:exon:25636;Parent=Msa0044250-mRNA-1
chr1_1 exon 75757789 75757952 75757789 ID=Msa0044250-mRNA-1:exon:25635;Parent=Msa0044250-mRNA-1
chr1_1 exon 75758492 75758543 75758492 ID=Msa0044250-mRNA-1:exon:25634;Parent=Msa0044250-mRNA-1
chr1_1 exon 75758663 75758711 75758663 ID=Msa0044250-mRNA-1:exon:25633;Parent=Msa0044250-mRNA-1
chr1_1 exon 75758799 75759184 75758799 ID=Msa0044250-mRNA-1:exon:25632;Parent=Msa0044250-mRNA-1
chr1_1 five_prime_UTR 75759155 75759184 75759155 ID=Msa0044250-mRNA-1:five_prime_utr;Parent=Msa0044250-mRNA-1
chr1_1 CDS 75758799 75759154 75758799 ID=Msa0044250-mRNA-1:cds;Parent=Msa0044250-mRNA-1
chr1_1 CDS 75758663 75758711 75758663 ID=Msa0044250-mRNA-1:cds;Parent=Msa0044250-mRNA-1
chr1_1 CDS 75758492 75758543 75758492 ID=Msa0044250-mRNA-1:cds;Parent=Msa0044250-mRNA-1
chr1_1 CDS 75757789 75757952 75757789 ID=Msa0044250-mRNA-1:cds;Parent=Msa0044250-mRNA-1
chr1_1 CDS 75756501 75756617 75756501 ID=Msa0044250-mRNA-1:cds;Parent=Msa0044250-mRNA-1
chr1_1 CDS 75755829 75755987 75755829 ID=Msa0044250-mRNA-1:cds;Parent=Msa0044250-mRNA-1
chr1_1 three_prime_UTR 75755682 75755828 75755682 ID=Msa0044250-mRNA-1:three_prime_utr;Parent=Msa0044250-mRNA-1
Gene Sequence

>Msa0044250

ATGAGCCAACAAGTAGTATTACGGCCTCTAAGACATTGGCCATGGCTGTTGCGCTTTCACCACCACCACCATCCTACTTCTTCTACTACTAAATTTTCTGCACTATATCATCATCTTCTTCTTCTTCCAACATCATCACCAGAACAATCCACAAAGATACGTCGTTTCTCTTTATCTGCATCTCGCGGAAAACTTCGAAGAGCTGATTCTTCATTACCCACCGCTCCCGAGGAAGAAGAAGAAGAAGATGCTGCCATTAAAAGCCGCAACCAATTGAAGCGTGAAGCAAAACGTGCTGTTAAATGGGGAATGGATTTGTCTTCCTTCTCTCCTCCCCAAATCAAACGCATACTTAAGGTGGTTTCTTTGGACCAAATTGTCTTTGAAGCTCTTATGTTGGTTAAGAGAATGGGGCCGGATGTTCGTGAAGGGAGGCGGCGTCAGTTCAATTATATAGGAAAGTTGTTACGGAATGTGGAACCGGAATTAATGGACGGATTAATAAAAGCAACAAAGGATTCTGACCATAAGGAGCTGCAAGCTTTAACTGGCTTGGGGCCTGATGATCCTGAGGATGATGATGAGAACTTGATAGAAACTGAAGACGAGAAGGATGATGAGGAATCTAAGCCTTATGATGATAGTCAAGTAACAAGGTGGTTTGATGGTTTGATCAACAAGGACATTCAAATCACCAATGAAGTTTATTCAGTTCAAGGTGTCGAGTATGATCGCCAGGAGTTGAGAAAGCTGGTACGTAAAGTGCACTTTGCTCAAGAAACGAAGGCTACGGATGAAGAAGAGGAGAAAAAAGTCGAGAAAGCAGAGATTAGGGCTAAGAAGGCCCTCACTCGTTTTCTCCGTAGTCTTTCAGAGAATATTGTCAATGAACATTAG

Protein sequence

>Msa0044250

MSQQVVLRPLRHWPWLLRFHHHHHPTSSTTKFSALYHHLLLLPTSSPEQSTKIRRFSLSASRGKLRRADSSLPTAPEEEEEEDAAIKSRNQLKREAKRAVKWGMDLSSFSPPQIKRILKVVSLDQIVFEALMLVKRMGPDVREGRRRQFNYIGKLLRNVEPELMDGLIKATKDSDHKELQALTGLGPDDPEDDDENLIETEDEKDDEESKPYDDSQVTRWFDGLINKDIQITNEVYSVQGVEYDRQELRKLVRKVHFAQETKATDEEEEKKVEKAEIRAKKALTRFLRSLSENIVNEH*