AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1013510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1013510 MtrunA17_Chr7g0225561 85.930 199 22 3 1 194 1 198 3.45e-95 275
Msa1013510 MtrunA17_Chr4g0057961 49.180 122 47 5 76 191 35 147 1.53e-25 96.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1013510 AT3G27160.1 45.729 199 82 4 1 191 1 181 4.94e-39 132
Msa1013510 AT3G27160.2 45.455 198 82 4 1 190 1 180 3.45e-38 131
Msa1013510 AT5G63300.1 39.496 119 62 4 76 191 66 177 7.27e-21 85.5
Msa1013510 AT5G63300.2 45.205 73 39 1 76 147 66 138 2.24e-15 72.0

Find 54 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTCTTCCTTCTTGGGTTT+TGG 0.117696 7_1:-20442558 None:intergenic
ATCATCATCCTCTTCCTTCT+TGG 0.209987 7_1:-20442565 None:intergenic
CTGAAGAGAGGTTGCTTAAT+AGG 0.214327 7_1:+20440765 Msa1013510:CDS
ACAATAACTTGAACATTATA+TGG 0.232267 7_1:-20440728 None:intergenic
TGAACTTGTTATTGCGGTTT+TGG 0.278601 7_1:-20440571 None:intergenic
TCATCATCCTCTTCCTTCTT+GGG 0.320409 7_1:-20442564 None:intergenic
AGGAAGAGGATGATGATAAC+TGG 0.330861 7_1:+20442571 Msa1013510:CDS
TTCAAGAGTGTAAGAGAAGA+AGG 0.348339 7_1:+20440819 Msa1013510:CDS
TTGATCTGCCCTCGATTCTC+TGG 0.349359 7_1:+20442813 Msa1013510:three_prime_UTR
AAATACAATAATTAAGTCTA+AGG 0.353871 7_1:-20442722 None:intergenic
ATCGGTAAATTCAACATCAT+AGG 0.380549 7_1:-20442886 None:intergenic
AAATTTAGTACATCCTCTTC+AGG 0.383834 7_1:-20442600 None:intergenic
TTTCAGGCGCCCTATGGGAG+GGG 0.395421 7_1:+20442491 Msa1013510:intron
CTATTAAGCAACCTCTCTTC+AGG 0.403889 7_1:-20440764 None:intergenic
AGTTGAGAGGGTGGTGGTTG+TGG 0.430525 7_1:-20440527 None:intergenic
TTCAGGCGCCCTATGGGAGG+GGG 0.460845 7_1:+20442492 Msa1013510:intron
GGAGAGAGAAGTTGAGAGGG+TGG 0.469049 7_1:-20440536 None:intergenic
TCGGTAAATTCAACATCATA+GGG 0.478031 7_1:-20442885 None:intergenic
ATACACAGGATGAGAAGAAA+AGG 0.479200 7_1:+20440852 Msa1013510:CDS
CGTAGAGAGGTTATGAGAGC+TGG 0.485901 7_1:+20440791 Msa1013510:CDS
CTAAGCGTAATCGTAGGAAC+AGG 0.488387 7_1:+20440891 Msa1013510:CDS
GACATATCTTGTGGTGGTTG+TGG 0.492878 7_1:-20440665 None:intergenic
AATGGAGAGAGAAGTTGAGA+GGG 0.496545 7_1:-20440539 None:intergenic
TAGTTGTTGTACTGTCCTCT+TGG 0.497512 7_1:-20442522 None:intergenic
CTCGATTCTCTGGAGTCTTA+CGG 0.499913 7_1:+20442823 Msa1013510:three_prime_UTR
CATGTACTAGTTATATATCA+AGG 0.510960 7_1:+20442909 Msa1013510:three_prime_UTR
GCTTAATAGGTTTCGTAGAG+AGG 0.539971 7_1:+20440778 Msa1013510:CDS
TGAAAATAATGATAAGATTG+TGG 0.542365 7_1:-20440432 None:intergenic
ATCGTAGGAACAGGTTTCCT+AGG 0.543908 7_1:+20440900 Msa1013510:CDS
GAGGACAGTACAACAACTAC+AGG 0.547409 7_1:+20442526 Msa1013510:CDS
GTTGAGAGAGCCATTGATGA+TGG 0.561571 7_1:-20440458 None:intergenic
AGATGATCCAAAACCCAAGA+AGG 0.568710 7_1:+20442551 Msa1013510:CDS
GAATGGAGAGAGAAGTTGAG+AGG 0.578830 7_1:-20440540 None:intergenic
TCAGGCGCCCTATGGGAGGG+GGG 0.579236 7_1:+20442493 Msa1013510:intron
GAATGAGAAGAAGTTTGAGA+AGG 0.583991 7_1:-20440483 None:intergenic
ATATATAACTAGTACATGAT+CGG 0.585153 7_1:-20442904 None:intergenic
GAGAGGCTTTGTATGCATGT+AGG 0.588157 7_1:+20442672 Msa1013510:three_prime_UTR
GGAAGAGGATGATGATAACT+GGG 0.591765 7_1:+20442572 Msa1013510:CDS
TCATTGCGGCTTAGAACAAG+TGG 0.596369 7_1:-20440596 None:intergenic
GAGAGAAGTTGAGAGGGTGG+TGG 0.599741 7_1:-20440533 None:intergenic
TCCAAAACCCAAGAAGGAAG+AGG 0.600608 7_1:+20442557 Msa1013510:CDS
TAACTGGGATCTACCTGAAG+AGG 0.601353 7_1:+20442587 Msa1013510:CDS
TGATGTGATTGATGAAGAAG+AGG 0.609512 7_1:-20440621 None:intergenic
TTAACTTGATGCAAGAGGGG+AGG 0.613515 7_1:-20442859 None:intergenic
GTAAGACTCCAGAGAATCGA+GGG 0.632603 7_1:-20442821 None:intergenic
GTGGTATGAACTTGTTATTG+CGG 0.634244 7_1:-20440577 None:intergenic
CGTAAGACTCCAGAGAATCG+AGG 0.641656 7_1:-20442822 None:intergenic
CGGTAAATTCAACATCATAG+GGG 0.665540 7_1:-20442884 None:intergenic
CTTGAAGACATATCTTGTGG+TGG 0.675392 7_1:-20440671 None:intergenic
ATGCTGCTAAGCGTAATCGT+AGG 0.678424 7_1:+20440885 Msa1013510:CDS
AAGATGATGAGCCTGAAGAG+AGG 0.695325 7_1:+20440753 Msa1013510:CDS
AAACTTGAAGACATATCTTG+TGG 0.702615 7_1:-20440674 None:intergenic
ATGAAGAAGAGGTTTCATTG+CGG 0.708330 7_1:-20440610 None:intergenic
GAGAGAGCCATTGATGATGG+TGG 0.732173 7_1:-20440455 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGATTTTCTTAAATTATTAA+CGG - chr7_1:20441083-20441102 None:intergenic 10.0%
!! GTTAATTATAATCAAATTCA+TGG + chr7_1:20441558-20441577 Msa1013510:intron 15.0%
!! AAATAACATTTAGTAATCTT+GGG + chr7_1:20441698-20441717 Msa1013510:intron 15.0%
!! AAATACAATAATTAAGTCTA+AGG - chr7_1:20442725-20442744 None:intergenic 15.0%
!! TGAAAATAATGATAAGATTG+TGG - chr7_1:20440435-20440454 None:intergenic 20.0%
!! ACAATAACTTGAACATTATA+TGG - chr7_1:20440731-20440750 None:intergenic 20.0%
!!! TTTGTTTTTGTTAACTGTTT+TGG + chr7_1:20440964-20440983 Msa1013510:intron 20.0%
!! ACAAAAAATTAAATGAAGCA+CGG - chr7_1:20441197-20441216 None:intergenic 20.0%
!! TTTAATAATGTTCAAATTCG+TGG - chr7_1:20441486-20441505 None:intergenic 20.0%
!! ATAATCAAATTCATGGATAA+TGG + chr7_1:20441565-20441584 Msa1013510:intron 20.0%
!! TAATCAAATTCATGGATAAT+GGG + chr7_1:20441566-20441585 Msa1013510:intron 20.0%
!! CAAATAACATTTAGTAATCT+TGG + chr7_1:20441697-20441716 Msa1013510:intron 20.0%
!!! TGTAGCTTAATTTATTTTGT+TGG + chr7_1:20442185-20442204 Msa1013510:intron 20.0%
!!! GTAGCTTAATTTATTTTGTT+GGG + chr7_1:20442186-20442205 Msa1013510:intron 20.0%
!!! TAGCTTAATTTATTTTGTTG+GGG + chr7_1:20442187-20442206 Msa1013510:intron 20.0%
!! TGAAAAATCATACATAATGT+GGG - chr7_1:20442641-20442660 None:intergenic 20.0%
!! ATATATAACTAGTACATGAT+CGG - chr7_1:20442907-20442926 None:intergenic 20.0%
! ATTCACATAATAACATACCT+AGG - chr7_1:20440920-20440939 None:intergenic 25.0%
! TCTTAAATTATTAACGGTGT+TGG - chr7_1:20441077-20441096 None:intergenic 25.0%
!!! GCTTCATTTAATTTTTTGTG+TGG + chr7_1:20441198-20441217 Msa1013510:intron 25.0%
!!! ATTTAATTTTTTGTGTGGAC+CGG + chr7_1:20441203-20441222 Msa1013510:intron 25.0%
! ATTTAACATTGATGCATTCT+CGG + chr7_1:20441309-20441328 Msa1013510:intron 25.0%
! CAATCTAATCTAGATATTTG+TGG - chr7_1:20441429-20441448 None:intergenic 25.0%
! CACAAATATCTAGATTAGAT+TGG + chr7_1:20441427-20441446 Msa1013510:intron 25.0%
! AATATCTAGATTAGATTGGA+TGG + chr7_1:20441431-20441450 Msa1013510:intron 25.0%
! AATCAAATTCATGGATAATG+GGG + chr7_1:20441567-20441586 Msa1013510:intron 25.0%
! AAATCTGACAACTTCATAAA+CGG - chr7_1:20441657-20441676 None:intergenic 25.0%
! TTTATGAAGTTGTCAGATTT+AGG + chr7_1:20441657-20441676 Msa1013510:intron 25.0%
!!! TAGTGTTTTGATTTATGACT+GGG + chr7_1:20441905-20441924 Msa1013510:intron 25.0%
! TCATAACAATACCATTATCA+AGG - chr7_1:20441986-20442005 None:intergenic 25.0%
!!! AAAGTTGATGTTTCAACTTA+TGG - chr7_1:20442028-20442047 None:intergenic 25.0%
! TTGTTGGGGTTATTAAATAT+AGG + chr7_1:20442201-20442220 Msa1013510:intron 25.0%
!! TTTATTTAAAACCTCCAGTT+GGG + chr7_1:20442392-20442411 Msa1013510:intron 25.0%
! GAAAAATCATACATAATGTG+GGG - chr7_1:20442640-20442659 None:intergenic 25.0%
! GTGAAAAATCATACATAATG+TGG - chr7_1:20442642-20442661 None:intergenic 25.0%
AAACTTGAAGACATATCTTG+TGG - chr7_1:20440677-20440696 None:intergenic 30.0%
!!! AAGGTTTTTTGAGAATACAC+AGG + chr7_1:20440838-20440857 Msa1013510:CDS 30.0%
!!! TGAGTGTTTGGTTTTAGTAT+TGG + chr7_1:20441010-20441029 Msa1013510:intron 30.0%
!!! TTTAATTTTTTGTGTGGACC+GGG + chr7_1:20441204-20441223 Msa1013510:intron 30.0%
CATTTCATTCGAGTATTCTT+GGG + chr7_1:20441382-20441401 Msa1013510:intron 30.0%
ATTTGAACACATGAGAATTG+TGG + chr7_1:20441536-20441555 Msa1013510:intron 30.0%
TAACATTTAGTAATCTTGGG+AGG + chr7_1:20441701-20441720 Msa1013510:intron 30.0%
! AGGTAGTTGATATCAATTTC+AGG + chr7_1:20441721-20441740 Msa1013510:intron 30.0%
ACACTATCATGTTAGGTAAA+TGG + chr7_1:20441819-20441838 Msa1013510:intron 30.0%
TAAATGGTTGTAGAGAAAGA+TGG + chr7_1:20441835-20441854 Msa1013510:intron 30.0%
TCTCATGTTTGTAGGTAAAA+TGG + chr7_1:20441866-20441885 Msa1013510:intron 30.0%
TTTGTAGGTAAAATGGAAGT+AGG + chr7_1:20441873-20441892 Msa1013510:intron 30.0%
!!! CTAGTGTTTTGATTTATGAC+TGG + chr7_1:20441904-20441923 Msa1013510:intron 30.0%
CATCTGTAATACCTTGATAA+TGG + chr7_1:20441972-20441991 Msa1013510:intron 30.0%
GGGGTTATTAAATATAGGTT+TGG + chr7_1:20442206-20442225 Msa1013510:intron 30.0%
TAAATATAGGTTTGGATCAG+AGG + chr7_1:20442214-20442233 Msa1013510:intron 30.0%
!!! CAACTGGAGGTTTTAAATAA+AGG - chr7_1:20442393-20442412 None:intergenic 30.0%
! CTTTATTTAAAACCTCCAGT+TGG + chr7_1:20442391-20442410 Msa1013510:intron 30.0%
! TTATTTAAAACCTCCAGTTG+GGG + chr7_1:20442393-20442412 Msa1013510:intron 30.0%
AAATTTAGTACATCCTCTTC+AGG - chr7_1:20442603-20442622 None:intergenic 30.0%
! TTTTCACATTTTACTGTGAG+AGG + chr7_1:20442655-20442674 Msa1013510:three_prime_UTR 30.0%
TCGGTAAATTCAACATCATA+GGG - chr7_1:20442888-20442907 None:intergenic 30.0%
ATCGGTAAATTCAACATCAT+AGG - chr7_1:20442889-20442908 None:intergenic 30.0%
! ATTTTCACCACCATCATCAA+TGG + chr7_1:20440448-20440467 Msa1013510:exon 35.0%
GAATGAGAAGAAGTTTGAGA+AGG - chr7_1:20440486-20440505 None:intergenic 35.0%
!!! TGAACTTGTTATTGCGGTTT+TGG - chr7_1:20440574-20440593 None:intergenic 35.0%
!! GTGGTATGAACTTGTTATTG+CGG - chr7_1:20440580-20440599 None:intergenic 35.0%
ATGAAGAAGAGGTTTCATTG+CGG - chr7_1:20440613-20440632 None:intergenic 35.0%
TGATGTGATTGATGAAGAAG+AGG - chr7_1:20440624-20440643 None:intergenic 35.0%
! TTCAAGAGTGTAAGAGAAGA+AGG + chr7_1:20440819-20440838 Msa1013510:CDS 35.0%
ATACACAGGATGAGAAGAAA+AGG + chr7_1:20440852-20440871 Msa1013510:CDS 35.0%
ACGAAGAAGAATTGAGTGTT+TGG + chr7_1:20440998-20441017 Msa1013510:intron 35.0%
GAGCTAGATATGACTGTAAT+GGG + chr7_1:20441264-20441283 Msa1013510:intron 35.0%
AAATTTGAACCTAAGACCTG+TGG + chr7_1:20441336-20441355 Msa1013510:intron 35.0%
CCAAGAATACTCGAATGAAA+TGG - chr7_1:20441384-20441403 None:intergenic 35.0%
CCATTTCATTCGAGTATTCT+TGG + chr7_1:20441381-20441400 Msa1013510:intron 35.0%
!! AGTATTCTTGGGCTAGTATT+AGG + chr7_1:20441393-20441412 Msa1013510:intron 35.0%
GTTAACACAATTCACACTCA+TGG - chr7_1:20441635-20441654 None:intergenic 35.0%
TTCATCGTTCTCATGTTTGT+AGG + chr7_1:20441858-20441877 Msa1013510:intron 35.0%
!! AAGAGCGTTTAGAGCTTATT+TGG - chr7_1:20441945-20441964 None:intergenic 35.0%
! CAAGGTATTACAGATGCATT+TGG - chr7_1:20441968-20441987 None:intergenic 35.0%
GTTGATGTTTCAACTTATGG+TGG - chr7_1:20442025-20442044 None:intergenic 35.0%
! TGCATGTGAATGTGTTCTTT+TGG + chr7_1:20442060-20442079 Msa1013510:intron 35.0%
CTCTCTTCATGTCGTATATT+TGG - chr7_1:20442129-20442148 None:intergenic 35.0%
CTTGATATTGTGAGCAATCA+CGG + chr7_1:20442274-20442293 Msa1013510:intron 35.0%
!!! TTGCAGTTTTGTTGCAGTTT+TGG + chr7_1:20442322-20442341 Msa1013510:intron 35.0%
! CACGGAAAACTGATTTATCA+CGG + chr7_1:20442348-20442367 Msa1013510:intron 35.0%
!!! GTTTTAACTTGATGCAAGAG+GGG - chr7_1:20442865-20442884 None:intergenic 35.0%
!!! GGTTTTAACTTGATGCAAGA+GGG - chr7_1:20442866-20442885 None:intergenic 35.0%
CGGTAAATTCAACATCATAG+GGG - chr7_1:20442887-20442906 None:intergenic 35.0%
!!! GTGATTTTGTTGGTGGTGAT+GGG - chr7_1:20440508-20440527 None:intergenic 40.0%
AATGGAGAGAGAAGTTGAGA+GGG - chr7_1:20440542-20440561 None:intergenic 40.0%
!! TATTGCGGTTTTGGTGAGAT+GGG - chr7_1:20440565-20440584 None:intergenic 40.0%
!! TTATTGCGGTTTTGGTGAGA+TGG - chr7_1:20440566-20440585 None:intergenic 40.0%
CTTGAAGACATATCTTGTGG+TGG - chr7_1:20440674-20440693 None:intergenic 40.0%
CTATTAAGCAACCTCTCTTC+AGG - chr7_1:20440767-20440786 None:intergenic 40.0%
CTGAAGAGAGGTTGCTTAAT+AGG + chr7_1:20440765-20440784 Msa1013510:CDS 40.0%
GCTTAATAGGTTTCGTAGAG+AGG + chr7_1:20440778-20440797 Msa1013510:CDS 40.0%
TATATGTGCCCGTATTGTGT+CGG + chr7_1:20441119-20441138 Msa1013510:intron 40.0%
TCTTCAAATAAGTCGTGACC+CGG - chr7_1:20441170-20441189 None:intergenic 40.0%
! TACAGTCATATCTAGCTCGA+GGG - chr7_1:20441262-20441281 None:intergenic 40.0%
! TTACAGTCATATCTAGCTCG+AGG - chr7_1:20441263-20441282 None:intergenic 40.0%
CGAGCTAGATATGACTGTAA+TGG + chr7_1:20441263-20441282 Msa1013510:intron 40.0%
ACCTAAGACCTGTGGTTAAA+CGG + chr7_1:20441344-20441363 Msa1013510:intron 40.0%
ATCTCTTTCCGTTTAACCAC+AGG - chr7_1:20441355-20441374 None:intergenic 40.0%
! ATTTCAAGTGATCCAACTGC+AGG + chr7_1:20441510-20441529 Msa1013510:intron 40.0%
TGTTCAAATCTACCTGCAGT+TGG - chr7_1:20441525-20441544 None:intergenic 40.0%
ACTCATGGTTAGTGATGTGT+TGG - chr7_1:20441620-20441639 None:intergenic 40.0%
TTTCAGGAATCAACCTTTCC+TGG + chr7_1:20441737-20441756 Msa1013510:intron 40.0%
! CGATTTTTGACAAGCACATG+TGG - chr7_1:20441773-20441792 None:intergenic 40.0%
! CTAACATGATAGTGTGACAC+AGG - chr7_1:20441814-20441833 None:intergenic 40.0%
CTGTGTCACACTATCATGTT+AGG + chr7_1:20441812-20441831 Msa1013510:intron 40.0%
TGGATCAGAGGTTTAAACAG+CGG + chr7_1:20442226-20442245 Msa1013510:intron 40.0%
TGCAATTGATGCCACATTGA+TGG - chr7_1:20442307-20442326 None:intergenic 40.0%
!! TTGTTGCAGTTTTGGCAACA+CGG + chr7_1:20442330-20442349 Msa1013510:intron 40.0%
GAAAATGATGCAAGACACAC+AGG - chr7_1:20442475-20442494 None:intergenic 40.0%
! GTGTGTCTTGCATCATTTTC+AGG + chr7_1:20442475-20442494 Msa1013510:intron 40.0%
TAGTTGTTGTACTGTCCTCT+TGG - chr7_1:20442525-20442544 None:intergenic 40.0%
AGATGATCCAAAACCCAAGA+AGG + chr7_1:20442551-20442570 Msa1013510:CDS 40.0%
TCATCATCCTCTTCCTTCTT+GGG - chr7_1:20442567-20442586 None:intergenic 40.0%
ATCATCATCCTCTTCCTTCT+TGG - chr7_1:20442568-20442587 None:intergenic 40.0%
AGGAAGAGGATGATGATAAC+TGG + chr7_1:20442571-20442590 Msa1013510:CDS 40.0%
GGAAGAGGATGATGATAACT+GGG + chr7_1:20442572-20442591 Msa1013510:CDS 40.0%
!!! GGGTTTTAACTTGATGCAAG+AGG - chr7_1:20442867-20442886 None:intergenic 40.0%
GTTGAGAGAGCCATTGATGA+TGG - chr7_1:20440461-20440480 None:intergenic 45.0%
!!! GGTGATTTTGTTGGTGGTGA+TGG - chr7_1:20440509-20440528 None:intergenic 45.0%
! GGTTGTGGTGATTTTGTTGG+TGG - chr7_1:20440515-20440534 None:intergenic 45.0%
! GGTGGTTGTGGTGATTTTGT+TGG - chr7_1:20440518-20440537 None:intergenic 45.0%
GAATGGAGAGAGAAGTTGAG+AGG - chr7_1:20440543-20440562 None:intergenic 45.0%
TCATTGCGGCTTAGAACAAG+TGG - chr7_1:20440599-20440618 None:intergenic 45.0%
GACATATCTTGTGGTGGTTG+TGG - chr7_1:20440668-20440687 None:intergenic 45.0%
AAGATGATGAGCCTGAAGAG+AGG + chr7_1:20440753-20440772 Msa1013510:CDS 45.0%
ATGCTGCTAAGCGTAATCGT+AGG + chr7_1:20440885-20440904 Msa1013510:CDS 45.0%
CTAAGCGTAATCGTAGGAAC+AGG + chr7_1:20440891-20440910 Msa1013510:CDS 45.0%
ATCGTAGGAACAGGTTTCCT+AGG + chr7_1:20440900-20440919 Msa1013510:CDS 45.0%
TGGTTATGAAGCACAGACAC+CGG + chr7_1:20441030-20441049 Msa1013510:intron 45.0%
TCCGTTTAACCACAGGTCTT+AGG - chr7_1:20441348-20441367 None:intergenic 45.0%
GGTTAGTGATGTGTTGGACT+TGG - chr7_1:20441614-20441633 None:intergenic 45.0%
TGGAAAACATACGCCAGGAA+AGG - chr7_1:20441753-20441772 None:intergenic 45.0%
ACATGTGGAAAACATACGCC+AGG - chr7_1:20441758-20441777 None:intergenic 45.0%
GACAGCAAGAACTACTGTGA+AGG + chr7_1:20442090-20442109 Msa1013510:intron 45.0%
ACTACTGTGAAGGTAGTTCC+AGG + chr7_1:20442100-20442119 Msa1013510:intron 45.0%
CTACTGTGAAGGTAGTTCCA+GGG + chr7_1:20442101-20442120 Msa1013510:intron 45.0%
TACTGTGAAGGTAGTTCCAG+GGG + chr7_1:20442102-20442121 Msa1013510:intron 45.0%
ATGTCGTATATTTGGTCCCC+TGG - chr7_1:20442121-20442140 None:intergenic 45.0%
ACGGTCAAATGCCATCAATG+TGG + chr7_1:20442293-20442312 Msa1013510:intron 45.0%
ATGTCAAACGACGAGAAAGG+GGG - chr7_1:20442439-20442458 None:intergenic 45.0%
CATGTCAAACGACGAGAAAG+GGG - chr7_1:20442440-20442459 None:intergenic 45.0%
CCATGTCAAACGACGAGAAA+GGG - chr7_1:20442441-20442460 None:intergenic 45.0%
TCCATGTCAAACGACGAGAA+AGG - chr7_1:20442442-20442461 None:intergenic 45.0%
!! ATCATTTTCAGGCGCCCTAT+GGG + chr7_1:20442486-20442505 Msa1013510:intron 45.0%
GAGGACAGTACAACAACTAC+AGG + chr7_1:20442526-20442545 Msa1013510:CDS 45.0%
TCCAAAACCCAAGAAGGAAG+AGG + chr7_1:20442557-20442576 Msa1013510:CDS 45.0%
! TCCTCTTCCTTCTTGGGTTT+TGG - chr7_1:20442561-20442580 None:intergenic 45.0%
TAACTGGGATCTACCTGAAG+AGG + chr7_1:20442587-20442606 Msa1013510:CDS 45.0%
! GAGAGGCTTTGTATGCATGT+AGG + chr7_1:20442672-20442691 Msa1013510:three_prime_UTR 45.0%
GTAAGACTCCAGAGAATCGA+GGG - chr7_1:20442824-20442843 None:intergenic 45.0%
!! CTCGATTCTCTGGAGTCTTA+CGG + chr7_1:20442823-20442842 Msa1013510:three_prime_UTR 45.0%
! TTAACTTGATGCAAGAGGGG+AGG - chr7_1:20442862-20442881 None:intergenic 45.0%
!! GAGAGAGCCATTGATGATGG+TGG - chr7_1:20440458-20440477 None:intergenic 50.0%
!! CGGTTTTGGTGAGATGGGAA+TGG - chr7_1:20440560-20440579 None:intergenic 50.0%
CGTAGAGAGGTTATGAGAGC+TGG + chr7_1:20440791-20440810 Msa1013510:CDS 50.0%
TGTCCGACACCGACACAATA+CGG - chr7_1:20441131-20441150 None:intergenic 50.0%
ACACGACATGTGTTCGACAC+CGG + chr7_1:20441148-20441167 Msa1013510:intron 50.0%
CAGTTGCAACCAGAGATACC+CGG - chr7_1:20441225-20441244 None:intergenic 50.0%
TGTCAAACGACGAGAAAGGG+GGG - chr7_1:20442438-20442457 None:intergenic 50.0%
CCCTTTCTCGTCGTTTGACA+TGG + chr7_1:20442438-20442457 Msa1013510:intron 50.0%
!! CATCATTTTCAGGCGCCCTA+TGG + chr7_1:20442485-20442504 Msa1013510:intron 50.0%
TTGATCTGCCCTCGATTCTC+TGG + chr7_1:20442813-20442832 Msa1013510:three_prime_UTR 50.0%
CGTAAGACTCCAGAGAATCG+AGG - chr7_1:20442825-20442844 None:intergenic 50.0%
! AGTTGAGAGGGTGGTGGTTG+TGG - chr7_1:20440530-20440549 None:intergenic 55.0%
GAGAGAAGTTGAGAGGGTGG+TGG - chr7_1:20440536-20440555 None:intergenic 55.0%
GGAGAGAGAAGTTGAGAGGG+TGG - chr7_1:20440539-20440558 None:intergenic 55.0%
TGTCAGTGTCGTGTCGTGTC+CGG - chr7_1:20441052-20441071 None:intergenic 55.0%
! TGCCCGTATTGTGTCGGTGT+CGG + chr7_1:20441125-20441144 Msa1013510:intron 55.0%
GTCCGACACCGACACAATAC+GGG - chr7_1:20441130-20441149 None:intergenic 55.0%
CACGACATGTGTTCGACACC+GGG + chr7_1:20441149-20441168 Msa1013510:intron 55.0%
TTGTGTGGACCGGGTATCTC+TGG + chr7_1:20441213-20441232 Msa1013510:intron 55.0%
TGTCATGACACCCCAACTGG+AGG - chr7_1:20442406-20442425 None:intergenic 55.0%
CCATGTCATGACACCCCAAC+TGG - chr7_1:20442409-20442428 None:intergenic 55.0%
! CCAGTTGGGGTGTCATGACA+TGG + chr7_1:20442406-20442425 Msa1013510:intron 55.0%
!! ATTTTCAGGCGCCCTATGGG+AGG + chr7_1:20442489-20442508 Msa1013510:intron 55.0%
!! TTTTCAGGCGCCCTATGGGA+GGG + chr7_1:20442490-20442509 Msa1013510:intron 55.0%
TTTCAGGCGCCCTATGGGAG+GGG + chr7_1:20442491-20442510 Msa1013510:intron 60.0%
GTGACTTCCCCCCTCCCATA+GGG - chr7_1:20442503-20442522 None:intergenic 60.0%
CACGGCTCAGCTTGCAGTCG+CGG + chr7_1:20442366-20442385 Msa1013510:intron 65.0%
TTCAGGCGCCCTATGGGAGG+GGG + chr7_1:20442492-20442511 Msa1013510:intron 65.0%
GGTGACTTCCCCCCTCCCAT+AGG - chr7_1:20442504-20442523 None:intergenic 65.0%
GGAGGGGGGAAGTCACCAAG+AGG + chr7_1:20442507-20442526 Msa1013510:CDS 65.0%
TCAGGCGCCCTATGGGAGGG+GGG + chr7_1:20442493-20442512 Msa1013510:intron 70.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 20440413 20442929 20440413 ID=Msa1013510;Name=Msa1013510
chr7_1 mRNA 20440413 20442929 20440413 ID=Msa1013510-mRNA-1;Parent=Msa1013510;Name=Msa1013510-mRNA-1;_AED=0.00;_eAED=0.00;_QI=54|1|1|1|1|1|2|303|194
chr7_1 exon 20440413 20440921 20440413 ID=Msa1013510-mRNA-1:exon:4862;Parent=Msa1013510-mRNA-1
chr7_1 exon 20442497 20442929 20442497 ID=Msa1013510-mRNA-1:exon:4863;Parent=Msa1013510-mRNA-1
chr7_1 five_prime_UTR 20440413 20440466 20440413 ID=Msa1013510-mRNA-1:five_prime_utr;Parent=Msa1013510-mRNA-1
chr7_1 CDS 20440467 20440921 20440467 ID=Msa1013510-mRNA-1:cds;Parent=Msa1013510-mRNA-1
chr7_1 CDS 20442497 20442626 20442497 ID=Msa1013510-mRNA-1:cds;Parent=Msa1013510-mRNA-1
chr7_1 three_prime_UTR 20442627 20442929 20442627 ID=Msa1013510-mRNA-1:three_prime_utr;Parent=Msa1013510-mRNA-1
Gene Sequence

>Msa1013510

ATGGCTCTCTCAACTTCCTTCTCAAACTTCTTCTCATTCCCATCACCACCAACAAAATCACCACAACCACCACCCTCTCAACTTCTCTCTCCATTCCCATCTCACCAAAACCGCAATAACAAGTTCATACCACTTGTTCTAAGCCGCAATGAAACCTCTTCTTCATCAATCACATCATCATCTTCATCATCTTCTTCACCACAACCACCACAAGATATGTCTTCAAGTTTCTCAACATCAAACTCAATGTTCTTAGCATCACCATATAATGTTCAAGTTATTGTTGAAGATGATGAGCCTGAAGAGAGGTTGCTTAATAGGTTTCGTAGAGAGGTTATGAGAGCTGGTATTATTCAAGAGTGTAAGAGAAGAAGGTTTTTTGAGAATACACAGGATGAGAAGAAAAGGAGAGTTCGTGATGCTGCTAAGCGTAATCGTAGGAACAGGTTTCCTAGGCGCCCTATGGGAGGGGGGAAGTCACCAAGAGGACAGTACAACAACTACAGGCAAGATGATCCAAAACCCAAGAAGGAAGAGGATGATGATAACTGGGATCTACCTGAAGAGGATGTACTAAATTTTTAA

Protein sequence

>Msa1013510

MALSTSFSNFFSFPSPPTKSPQPPPSQLLSPFPSHQNRNNKFIPLVLSRNETSSSSITSSSSSSSSPQPPQDMSSSFSTSNSMFLASPYNVQVIVEDDEPEERLLNRFRREVMRAGIIQECKRRRFFENTQDEKKRRVRDAAKRNRRNRFPRRPMGGGKSPRGQYNNYRQDDPKPKKEEDDDNWDLPEEDVLNF*