Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0036220 | XP_003591766.1 | 99.116 | 679 | 6 | 0 | 1 | 679 | 1 | 679 | 0.0 | 1368 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0036220 | sp|Q8CGZ0|CHERP_MOUSE | 56.667 | 60 | 26 | 0 | 120 | 179 | 6 | 65 | 4.39e-13 | 76.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013050 | Msa0036220 | 0.806212 | 9.177461e-50 | -8.615850e-47 |
| Msa0036220 | Msa0054730 | 0.825219 | 5.281878e-54 | -8.615850e-47 |
| Msa0036220 | Msa0162770 | 0.800575 | 1.351428e-48 | -8.615850e-47 |
| Msa0036220 | Msa0191050 | -0.805195 | 1.501075e-49 | -8.615850e-47 |
| Msa0036220 | Msa0220580 | -0.800564 | 1.358638e-48 | -8.615850e-47 |
| Msa0036220 | Msa0233350 | -0.801874 | 7.329669e-49 | -8.615850e-47 |
| Msa0036220 | Msa0306210 | 0.800964 | 1.125548e-48 | -8.615850e-47 |
| Msa0036220 | Msa0380040 | -0.807336 | 5.313141e-50 | -8.615850e-47 |
| Msa0036220 | Msa0399340 | -0.801774 | 7.684071e-49 | -8.615850e-47 |
| Msa0036220 | Msa0414950 | 0.816755 | 4.694913e-52 | -8.615850e-47 |
| Msa0036220 | Msa0475580 | -0.803973 | 2.699376e-49 | -8.615850e-47 |
| Msa0036220 | Msa0479970 | -0.802515 | 5.409738e-49 | -8.615850e-47 |
| Msa0036220 | Msa0519220 | -0.808210 | 3.464073e-50 | -8.615850e-47 |
| Msa0036220 | Msa0553220 | 0.822191 | 2.702941e-53 | -8.615850e-47 |
| Msa0036220 | Msa0607340 | 0.812181 | 4.824284e-51 | -8.615850e-47 |
| Msa0036220 | Msa0608710 | -0.803238 | 3.835660e-49 | -8.615850e-47 |
| Msa0036220 | Msa0661190 | 0.846452 | 2.152885e-59 | -8.615850e-47 |
| Msa0036220 | Msa0663920 | -0.803474 | 3.426048e-49 | -8.615850e-47 |
| Msa0036220 | Msa0788070 | 0.802294 | 6.005960e-49 | -8.615850e-47 |
| Msa0036220 | Msa0864470 | 0.817137 | 3.854995e-52 | -8.615850e-47 |
| Msa0036220 | Msa0876850 | 0.805279 | 1.441226e-49 | -8.615850e-47 |
| Msa0036220 | Msa0992490 | 0.802336 | 5.888769e-49 | -8.615850e-47 |
| Msa0036220 | Msa1063510 | -0.803435 | 3.490402e-49 | -8.615850e-47 |
| Msa0036220 | Msa1075220 | 0.800122 | 1.671513e-48 | -8.615850e-47 |
| Msa0036220 | Msa1116130 | 0.812240 | 4.682923e-51 | -8.615850e-47 |
| Msa0036220 | Msa1157930 | 0.802079 | 6.651129e-49 | -8.615850e-47 |
| Msa0036220 | Msa1201430 | 0.829924 | 3.920091e-55 | -8.615850e-47 |
| Msa0036220 | Msa1211140 | 0.802394 | 5.729172e-49 | -8.615850e-47 |
| Msa0036220 | Msa1211150 | 0.804221 | 2.396893e-49 | -8.615850e-47 |
| Msa0036220 | Msa1225150 | 0.801513 | 8.689395e-49 | -8.615850e-47 |
| Msa0036220 | Msa1249640 | 0.827293 | 1.694624e-54 | -8.615850e-47 |
| Msa0036220 | Msa1254370 | 0.835432 | 1.684064e-56 | -8.615850e-47 |
| Msa0036220 | Msa1259590 | 0.828472 | 8.821560e-55 | -8.615850e-47 |
| Msa0036220 | Msa1293510 | -0.810566 | 1.081583e-50 | -8.615850e-47 |
| Msa0036220 | Msa1294610 | 0.813811 | 2.119105e-51 | -8.615850e-47 |
| Msa0036220 | Msa1332040 | 0.802906 | 4.490981e-49 | -8.615850e-47 |
| Msa0036220 | Msa1359650 | 0.811823 | 5.772720e-51 | -8.615850e-47 |
| Msa0036220 | Msa1453780 | 0.844237 | 8.563011e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0036220 | MtrunA17_Chr1g0198421 | 99.116 | 679 | 6 | 0 | 1 | 679 | 1 | 679 | 0.0 | 1368 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0036220 | AT4G31200.3 | 63.978 | 558 | 166 | 9 | 125 | 679 | 125 | 650 | 0.0 | 629 |
| Msa0036220 | AT4G31200.1 | 63.978 | 558 | 166 | 9 | 125 | 679 | 125 | 650 | 0.0 | 629 |
| Msa0036220 | AT4G31200.2 | 63.978 | 558 | 166 | 9 | 125 | 679 | 125 | 650 | 0.0 | 629 |
Find 222 sgRNAs with CRISPR-Local
Find 332 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGAGTTTAGCCCCTTTAA+TGG | 0.171204 | 1_1:+64669279 | None:intergenic |
| CAAATCATGGCTTCAAATTC+AGG | 0.172640 | 1_1:+64669724 | None:intergenic |
| ATCATAATAAGTTGTGTTAT+TGG | 0.207906 | 1_1:-64666741 | Msa0036220:three_prime_UTR |
| CATCAACATCATCAGTCTTT+TGG | 0.231442 | 1_1:-64669427 | Msa0036220:CDS |
| TGCAGCAAATGGTGGAGTTC+TGG | 0.248532 | 1_1:-64668297 | Msa0036220:CDS |
| TTTCCACCTGGCCTCATTCC+TGG | 0.253118 | 1_1:-64667255 | Msa0036220:CDS |
| TCTTCTGCTTCAGCAGATTC+AGG | 0.260816 | 1_1:-64668172 | Msa0036220:CDS |
| CTTGCCACTGCTGGACAATA+TGG | 0.265914 | 1_1:+64667484 | None:intergenic |
| AAAGGGCTCATAGGAGAATA+AGG | 0.286221 | 1_1:+64667198 | None:intergenic |
| ATGAGTCTCTTAACGATATA+TGG | 0.301188 | 1_1:+64670168 | None:intergenic |
| CTATATTCCTCATTGCTTTG+TGG | 0.310501 | 1_1:+64668328 | None:intergenic |
| AGACCGCCCCGATAAACTTC+TGG | 0.314576 | 1_1:-64667424 | Msa0036220:CDS |
| GGTACAAAGGAATCCATTAA+AGG | 0.320397 | 1_1:-64669292 | Msa0036220:CDS |
| ATGATGTATATTCATCTTAC+AGG | 0.324682 | 1_1:-64666837 | Msa0036220:CDS |
| TTGGTTGAATGGACCACCTT+GGG | 0.328779 | 1_1:+64669609 | None:intergenic |
| TCATAATAAGTTGTGTTATT+GGG | 0.335683 | 1_1:-64666740 | Msa0036220:three_prime_UTR |
| TTATTCTCCTATGAGCCCTT+TGG | 0.337303 | 1_1:-64667196 | Msa0036220:CDS |
| TGCATCTTTCTAACCATTCC+AGG | 0.339691 | 1_1:+64667237 | None:intergenic |
| TCCTATCAGCTTGCCACTGC+TGG | 0.341478 | 1_1:+64667475 | None:intergenic |
| CCAATGAATCCGATCGGAAT+TGG | 0.341605 | 1_1:-64669511 | Msa0036220:CDS |
| CCAGGTGGAAACAGTGGATA+TGG | 0.347495 | 1_1:+64667267 | None:intergenic |
| TCGGCGTAGGTCCCTGTCTC+TGG | 0.348204 | 1_1:+64666949 | None:intergenic |
| CTCAAGGTTGAGATGTTTAG+TGG | 0.354387 | 1_1:-64668235 | Msa0036220:CDS |
| CTTTGACAGAAATGAAGTTC+TGG | 0.355375 | 1_1:-64666601 | Msa0036220:three_prime_UTR |
| TCTCTTGATTCAGAATTCAT+AGG | 0.360316 | 1_1:+64667069 | None:intergenic |
| TAGCAGAGACTCTTAGAGAT+AGG | 0.364852 | 1_1:-64669225 | Msa0036220:CDS |
| CCAATTCCGATCGGATTCAT+TGG | 0.374927 | 1_1:+64669511 | None:intergenic |
| ACTTATTATGATACGGTAAC+AGG | 0.384553 | 1_1:+64666752 | None:intergenic |
| GTACAAAGGAATCCATTAAA+GGG | 0.385074 | 1_1:-64669291 | Msa0036220:CDS |
| TCATACTGACTCACCTCATT+TGG | 0.385879 | 1_1:+64666859 | None:intergenic |
| GAGGTGCTTGATGCTGCTGC+TGG | 0.388094 | 1_1:+64669887 | None:intergenic |
| GGATGTGCAGCACCGGGACC+AGG | 0.392689 | 1_1:+64669991 | None:intergenic |
| AGAAAGATGCAGATTGGTAG+TGG | 0.394454 | 1_1:-64667225 | Msa0036220:CDS |
| GGATCAGAAGGAGGAGCGAC+TGG | 0.395038 | 1_1:+64669799 | None:intergenic |
| GCAGCAAATGGTGGAGTTCT+GGG | 0.396850 | 1_1:-64668296 | Msa0036220:CDS |
| AGATTGCCCCAGAAGTTTAT+CGG | 0.401331 | 1_1:+64667416 | None:intergenic |
| AATGTTCTTAACAATTTGAA+TGG | 0.405354 | 1_1:-64669313 | Msa0036220:CDS |
| CTAGGAGATGGGCTCATCAT+AGG | 0.412653 | 1_1:+64669541 | None:intergenic |
| TCAAGTGGCTCGGGAAGGTT+AGG | 0.416215 | 1_1:-64666901 | Msa0036220:CDS |
| AGAAGGAAACTGCTGATGTT+GGG | 0.417539 | 1_1:+64670041 | None:intergenic |
| ATGCAACAGCAGCAGCAGTT+TGG | 0.418027 | 1_1:-64670072 | Msa0036220:CDS |
| GATGGGCTCATCATAGGATT+AGG | 0.418155 | 1_1:+64669547 | None:intergenic |
| CACAAAGCAATGAGGAATAT+AGG | 0.420244 | 1_1:-64668327 | Msa0036220:CDS |
| GGAAGTGTAGATCGCAAGCC+GGG | 0.423137 | 1_1:-64666925 | Msa0036220:CDS |
| GAGGTGGAGGAGGGCCTTGA+TGG | 0.429106 | 1_1:+64669920 | None:intergenic |
| GCTCGGGAAGGTTAGGACTT+GGG | 0.430097 | 1_1:-64666894 | Msa0036220:CDS |
| GGATAATGAGAAGGGAATGC+AGG | 0.436295 | 1_1:+64669865 | None:intergenic |
| CAAGCTGATAGGATGAGTTC+TGG | 0.439722 | 1_1:-64667465 | Msa0036220:CDS |
| GATTGCCCCAGAAGTTTATC+GGG | 0.439936 | 1_1:+64667417 | None:intergenic |
| ACATCAGATGGAAGTGGTCC+GGG | 0.440088 | 1_1:+64669352 | None:intergenic |
| GTTGTTGATCATAGAATTGT+TGG | 0.443578 | 1_1:+64669455 | None:intergenic |
| AACATCAGATGGAAGTGGTC+CGG | 0.446895 | 1_1:+64669351 | None:intergenic |
| CATAGAGGGATGTGCAGCAC+CGG | 0.455466 | 1_1:+64669984 | None:intergenic |
| GACCGCCCCGATAAACTTCT+GGG | 0.455966 | 1_1:-64667423 | Msa0036220:CDS |
| ACCTGGCCTCATTCCTGGAA+TGG | 0.456683 | 1_1:-64667250 | Msa0036220:CDS |
| GGGATATCCAAAGGGCTCAT+AGG | 0.458592 | 1_1:+64667189 | None:intergenic |
| GCAAGCATAGAGCCTAAAAC+AGG | 0.465414 | 1_1:+64668367 | None:intergenic |
| GCCGGATGATGGAGGTTGAT+TGG | 0.468619 | 1_1:+64667308 | None:intergenic |
| GTTGACGGTGGTATCATAGT+TGG | 0.471452 | 1_1:+64667168 | None:intergenic |
| GACGGAAATGGTTGGTTGAA+TGG | 0.471676 | 1_1:+64669598 | None:intergenic |
| GCAAAGCTTGAAAGCACACT+TGG | 0.473177 | 1_1:-64666579 | Msa0036220:three_prime_UTR |
| TCAGAAGGAGGAGCGACTGG+GGG | 0.474797 | 1_1:+64669802 | None:intergenic |
| TGTTGCATTGCATGATGAAA+AGG | 0.475533 | 1_1:+64669952 | None:intergenic |
| AAGCCGGGGTCAAGTGGCTC+GGG | 0.477174 | 1_1:-64666910 | Msa0036220:CDS |
| AAATGGTGATGGAGCAAGAT+GGG | 0.479492 | 1_1:+64669840 | None:intergenic |
| GATGTGCAGCACCGGGACCA+GGG | 0.482172 | 1_1:+64669992 | None:intergenic |
| CAGCAGATTGATCCAGAGAC+AGG | 0.482941 | 1_1:-64666961 | Msa0036220:CDS |
| GATCAATCTGCTGCAAGTGT+GGG | 0.484246 | 1_1:+64666971 | None:intergenic |
| GGATCAATCTGCTGCAAGTG+TGG | 0.486896 | 1_1:+64666970 | None:intergenic |
| TAGGAAAAGATTGCAGCAAA+TGG | 0.487417 | 1_1:-64668308 | Msa0036220:CDS |
| GGTCACTTGGGTGTTAGACT+AGG | 0.488636 | 1_1:-64666719 | Msa0036220:three_prime_UTR |
| TCCAGCAGTGGCAAGCTGAT+AGG | 0.490696 | 1_1:-64667476 | Msa0036220:CDS |
| CAGAAGGAAACTGCTGATGT+TGG | 0.491214 | 1_1:+64670040 | None:intergenic |
| AGAATTGTTGGAACGGAGGC+GGG | 0.492378 | 1_1:+64669467 | None:intergenic |
| CACCGTCGCTCTAGCACTCA+TGG | 0.493807 | 1_1:+64666786 | None:intergenic |
| AGAAGAAGATGAGGTGGAGG+AGG | 0.494735 | 1_1:+64669910 | None:intergenic |
| GGCTCGGGAAGGTTAGGACT+TGG | 0.496051 | 1_1:-64666895 | Msa0036220:CDS |
| ACCAATCAACCTCCATCATC+CGG | 0.498015 | 1_1:-64667309 | Msa0036220:CDS |
| TGCTGTTGCATATTAGCAGC+CGG | 0.498088 | 1_1:+64670084 | None:intergenic |
| TCTGCTAGAGCTGGTGCAAA+TGG | 0.499252 | 1_1:+64669241 | None:intergenic |
| GATCAGAAGGAGGAGCGACT+GGG | 0.499402 | 1_1:+64669800 | None:intergenic |
| GAGTTCTGGTACAATTGTCT+TGG | 0.499457 | 1_1:-64667451 | Msa0036220:CDS |
| GCTTCAGCAGATTCAGGTGC+AGG | 0.500701 | 1_1:-64668166 | Msa0036220:intron |
| CTCGGGAAGGTTAGGACTTG+GGG | 0.500704 | 1_1:-64666893 | Msa0036220:CDS |
| CAAGCCGGGGTCAAGTGGCT+CGG | 0.501995 | 1_1:-64666911 | Msa0036220:CDS |
| TTCTAACCATTCCAGGAATG+AGG | 0.502170 | 1_1:+64667244 | None:intergenic |
| TGTTCGCCTGTGCCGGATGA+TGG | 0.506392 | 1_1:+64667297 | None:intergenic |
| AAAGGGAACTGCTGCATAGA+GGG | 0.507148 | 1_1:+64669970 | None:intergenic |
| AGTTGTGTTATTGGGTCACT+TGG | 0.507201 | 1_1:-64666732 | Msa0036220:three_prime_UTR |
| GATGATGGAGGTTGATTGGT+TGG | 0.508069 | 1_1:+64667312 | None:intergenic |
| AGGTAATTGTTCGCCTGTGC+CGG | 0.510419 | 1_1:+64667290 | None:intergenic |
| GGGGAGCCCTTTGAAAGACT+TGG | 0.516807 | 1_1:+64669372 | None:intergenic |
| AGATGGGGAGGATAATGAGA+AGG | 0.517184 | 1_1:+64669856 | None:intergenic |
| AGTTCCATTGCAACATCAGA+TGG | 0.517329 | 1_1:+64669340 | None:intergenic |
| TTGATAACCAAAGCTTAAAA+CGG | 0.517781 | 1_1:+64669638 | None:intergenic |
| AGCAGAGACTCTTAGAGATA+GGG | 0.518022 | 1_1:-64669224 | Msa0036220:CDS |
| AAATCATGGCTTCAAATTCA+GGG | 0.518945 | 1_1:+64669725 | None:intergenic |
| CACTGCTGGACAATATGGTT+TGG | 0.518970 | 1_1:+64667489 | None:intergenic |
| TTATGCTGCTGCGTCTGCTA+TGG | 0.519197 | 1_1:-64670127 | Msa0036220:CDS |
| CAGTCATCCAAGTCTTTCAA+AGG | 0.519535 | 1_1:-64669379 | Msa0036220:CDS |
| CAGTTTCCTTCTGCGATGCA+TGG | 0.519987 | 1_1:-64670030 | Msa0036220:CDS |
| CCATTAAAGGGGCTAAACTC+TGG | 0.520343 | 1_1:-64669279 | Msa0036220:CDS |
| ATCAATCTGCTGCAAGTGTG+GGG | 0.521605 | 1_1:+64666972 | None:intergenic |
| TAACACAACTTATTATGATA+CGG | 0.524039 | 1_1:+64666745 | None:intergenic |
| TTGGTTGGTTGAACAGAAGA+TGG | 0.524098 | 1_1:+64667327 | None:intergenic |
| TGGAGAAGAAGATGAGGTGG+AGG | 0.524856 | 1_1:+64669907 | None:intergenic |
| ACTCTTTGAAGAATTTCTGA+TGG | 0.528875 | 1_1:+64667138 | None:intergenic |
| GGAGGCGGGACTAGCATTGA+AGG | 0.531099 | 1_1:+64669481 | None:intergenic |
| AAGGGCTCATAGGAGAATAA+GGG | 0.531749 | 1_1:+64667199 | None:intergenic |
| TTGACGGTGGTATCATAGTT+GGG | 0.532121 | 1_1:+64667169 | None:intergenic |
| TAGAATTGTTGGAACGGAGG+CGG | 0.534353 | 1_1:+64669466 | None:intergenic |
| GAGAGAATCTCAAGTACGAA+AGG | 0.534553 | 1_1:-64667016 | Msa0036220:CDS |
| GCAGGAAAAGAATTTGTTTG+TGG | 0.534988 | 1_1:+64668211 | None:intergenic |
| ATGTGCAGCACCGGGACCAG+GGG | 0.536109 | 1_1:+64669993 | None:intergenic |
| GCAGCAGCATAATCATGATT+CGG | 0.538042 | 1_1:+64670138 | None:intergenic |
| CAAAAGACTGATGATGTTGA+TGG | 0.538116 | 1_1:+64669428 | None:intergenic |
| ATGGTTAGAAAGATGCAGAT+TGG | 0.539666 | 1_1:-64667231 | Msa0036220:CDS |
| ATCATAGTTGGGATATCCAA+AGG | 0.542672 | 1_1:+64667180 | None:intergenic |
| CTAAGAGTCTCTGCTAGAGC+TGG | 0.546534 | 1_1:+64669232 | None:intergenic |
| ATTGGAGGACCACTAGGAGA+TGG | 0.546578 | 1_1:+64669529 | None:intergenic |
| TCTGATGGTGGTACAGTTGA+CGG | 0.546658 | 1_1:+64667153 | None:intergenic |
| ATTCCGATCGGATTCATTGG+AGG | 0.549640 | 1_1:+64669514 | None:intergenic |
| CCAAAGAGAAAACTATAAGA+AGG | 0.549958 | 1_1:+64669682 | None:intergenic |
| ACCATTCCAGGAATGAGGCC+AGG | 0.550771 | 1_1:+64667249 | None:intergenic |
| CTTTGAAGAATTTCTGATGG+TGG | 0.550986 | 1_1:+64667141 | None:intergenic |
| TAACAATTTGAATGGTACAA+AGG | 0.551131 | 1_1:-64669305 | Msa0036220:CDS |
| GGATTCATTGGAGGACCACT+AGG | 0.551291 | 1_1:+64669523 | None:intergenic |
| GAAAGATGCAGATTGGTAGT+GGG | 0.551892 | 1_1:-64667224 | Msa0036220:CDS |
| TGGAAGTGTAGATCGCAAGC+CGG | 0.554513 | 1_1:-64666926 | Msa0036220:CDS |
| GTATGCTCAGCAACTGCGAC+CGG | 0.554791 | 1_1:-64670103 | Msa0036220:CDS |
| TAATTGGCAGCTTAAATCGA+AGG | 0.556153 | 1_1:-64668432 | Msa0036220:intron |
| CTAAAACAGGTTTAAACGCA+AGG | 0.556333 | 1_1:+64668380 | None:intergenic |
| TTGGAGGACCACTAGGAGAT+GGG | 0.559246 | 1_1:+64669530 | None:intergenic |
| AGAGAATCTCAAGTACGAAA+GGG | 0.561605 | 1_1:-64667015 | Msa0036220:CDS |
| CAACCTCCATCATCCGGCAC+AGG | 0.562399 | 1_1:-64667303 | Msa0036220:CDS |
| CCATATCCACTGTTTCCACC+TGG | 0.565574 | 1_1:-64667267 | Msa0036220:CDS |
| AAAAGGGAACTGCTGCATAG+AGG | 0.565870 | 1_1:+64669969 | None:intergenic |
| ATAGAGGGATGTGCAGCACC+GGG | 0.568547 | 1_1:+64669985 | None:intergenic |
| CAACATCAGCTGCACCATCA+AGG | 0.569316 | 1_1:-64669934 | Msa0036220:CDS |
| ATCAGAAGGAGGAGCGACTG+GGG | 0.571348 | 1_1:+64669801 | None:intergenic |
| TCATAGGATTAGGAGAAGGA+TGG | 0.571422 | 1_1:+64669557 | None:intergenic |
| AAGTCTTTCAAAGGGCTCCC+CGG | 0.575478 | 1_1:-64669370 | Msa0036220:CDS |
| TGGAGAGGTAAATCCTTCTG+AGG | 0.577130 | 1_1:-64667094 | Msa0036220:CDS |
| GGTGGACCATGCATCGCAGA+AGG | 0.581092 | 1_1:+64670024 | None:intergenic |
| CGGGGTCAAGTGGCTCGGGA+AGG | 0.581694 | 1_1:-64666906 | Msa0036220:CDS |
| GGAGTTCTGGGCTTCTAAAG+AGG | 0.582284 | 1_1:-64668284 | Msa0036220:CDS |
| GATGGGGAGGATAATGAGAA+GGG | 0.582970 | 1_1:+64669857 | None:intergenic |
| GAAAAGATTGCAGCAAATGG+TGG | 0.583030 | 1_1:-64668305 | Msa0036220:CDS |
| AGTCATCCAAGTCTTTCAAA+GGG | 0.583117 | 1_1:-64669378 | Msa0036220:CDS |
| GTTGGTTGAATGGACCACCT+TGG | 0.584332 | 1_1:+64669608 | None:intergenic |
| GTTGCATTGCATGATGAAAA+GGG | 0.584577 | 1_1:+64669953 | None:intergenic |
| GAAGAAGATGAGGTGGAGGA+GGG | 0.589912 | 1_1:+64669911 | None:intergenic |
| GATGGTATACCCATGGACCC+TGG | 0.589913 | 1_1:+64667345 | None:intergenic |
| CACTCACGACCTTGACAATG+AGG | 0.591126 | 1_1:-64668404 | Msa0036220:CDS |
| TCAATCTGCTGCAAGTGTGG+GGG | 0.592837 | 1_1:+64666973 | None:intergenic |
| GATCGCAAGCCGGGGTCAAG+TGG | 0.594261 | 1_1:-64666916 | Msa0036220:CDS |
| GATGAAGATGATGAATACGA+TGG | 0.594918 | 1_1:-64667048 | Msa0036220:CDS |
| GTTGTGTTATTGGGTCACTT+GGG | 0.596965 | 1_1:-64666731 | Msa0036220:three_prime_UTR |
| TCATAGTTGGGATATCCAAA+GGG | 0.598832 | 1_1:+64667181 | None:intergenic |
| ATTGCAACATCAGATGGAAG+TGG | 0.599708 | 1_1:+64669346 | None:intergenic |
| ACTTCCATCTGATGTTGCAA+TGG | 0.601575 | 1_1:-64669344 | Msa0036220:CDS |
| GACATGGAAGATGACGGAAA+TGG | 0.602957 | 1_1:+64669586 | None:intergenic |
| AAAATGGTGATGGAGCAAGA+TGG | 0.603592 | 1_1:+64669839 | None:intergenic |
| TGAAGTTCGGGATCAGAAGG+AGG | 0.604278 | 1_1:+64669790 | None:intergenic |
| GGTGATGGAGCAAGATGGGG+AGG | 0.606868 | 1_1:+64669844 | None:intergenic |
| TGCTGGAGAAGAAGATGAGG+TGG | 0.607654 | 1_1:+64669904 | None:intergenic |
| CTTCCCGAGCCACTTGACCC+CGG | 0.607705 | 1_1:+64666907 | None:intergenic |
| ATATATCGTTAAGAGACTCA+TGG | 0.608106 | 1_1:-64670166 | Msa0036220:exon |
| AACAGAAGATGGTATACCCA+TGG | 0.609801 | 1_1:+64667338 | None:intergenic |
| GAGACAGGGACCTACGCCGA+TGG | 0.610164 | 1_1:-64666946 | Msa0036220:CDS |
| TGATCATAGAATTGTTGGAA+CGG | 0.610239 | 1_1:+64669460 | None:intergenic |
| GAATTCATAGGACCCTCAGA+AGG | 0.611084 | 1_1:+64667081 | None:intergenic |
| ATCCATGAGTGCTAGAGCGA+CGG | 0.612608 | 1_1:-64666788 | Msa0036220:CDS |
| GCCCCAGAAGTTTATCGGGG+CGG | 0.613335 | 1_1:+64667421 | None:intergenic |
| ACGCAAGGGCCTCATTGTCA+AGG | 0.613596 | 1_1:+64668395 | None:intergenic |
| CTGACTCACCTCATTTGGAT+CGG | 0.614581 | 1_1:+64666864 | None:intergenic |
| TCAAGGTTGAGATGTTTAGT+GGG | 0.615824 | 1_1:-64668234 | Msa0036220:CDS |
| ATGAGGCCAGGTGGAAACAG+TGG | 0.616558 | 1_1:+64667261 | None:intergenic |
| GGCGACAGCCGATCCAAATG+AGG | 0.616700 | 1_1:-64666872 | Msa0036220:CDS |
| TGGTTATCAAGTCGACCCCA+AGG | 0.617547 | 1_1:-64669625 | Msa0036220:CDS |
| ATCATTGACATGGAAGATGA+CGG | 0.618808 | 1_1:+64669580 | None:intergenic |
| AATGGTGATGGAGCAAGATG+GGG | 0.623373 | 1_1:+64669841 | None:intergenic |
| GAAGGAAACTGCTGATGTTG+GGG | 0.624450 | 1_1:+64670042 | None:intergenic |
| ATCTACACTTCCATCGGCGT+AGG | 0.625724 | 1_1:+64666936 | None:intergenic |
| CTTGCGATCTACACTTCCAT+CGG | 0.626191 | 1_1:+64666930 | None:intergenic |
| AGAAGGATGGATCATTGACA+TGG | 0.629651 | 1_1:+64669570 | None:intergenic |
| TGTGCAGCACCGGGACCAGG+GGG | 0.632132 | 1_1:+64669994 | None:intergenic |
| TACAAAGGAATCCATTAAAG+GGG | 0.632449 | 1_1:-64669290 | Msa0036220:CDS |
| CTCATCATAGGATTAGGAGA+AGG | 0.632515 | 1_1:+64669553 | None:intergenic |
| AATTGGCAGCTTAAATCGAA+GGG | 0.633560 | 1_1:-64668431 | Msa0036220:intron |
| TTGGATGACTGATCATACTC+AGG | 0.634185 | 1_1:+64669391 | None:intergenic |
| TGGTTGAATGGACCACCTTG+GGG | 0.635634 | 1_1:+64669610 | None:intergenic |
| GGCGAAGATCCAATTCCGAT+CGG | 0.636387 | 1_1:+64669502 | None:intergenic |
| TAAAACAGGTTTAAACGCAA+GGG | 0.636821 | 1_1:+64668381 | None:intergenic |
| AAAGATGCAGATTGGTAGTG+GGG | 0.637153 | 1_1:-64667223 | Msa0036220:CDS |
| ATGATGAGCCCATCTCCTAG+TGG | 0.643176 | 1_1:-64669538 | Msa0036220:CDS |
| TCGCCTGTGCCGGATGATGG+AGG | 0.643307 | 1_1:+64667300 | None:intergenic |
| ATGGACCCTGGAAAAGCACT+AGG | 0.644978 | 1_1:+64667357 | None:intergenic |
| GGTCCTCCAATGAATCCGAT+CGG | 0.645462 | 1_1:-64669517 | Msa0036220:CDS |
| CATCAGATGGAAGTGGTCCG+GGG | 0.646313 | 1_1:+64669353 | None:intergenic |
| AGAGACTATATCTTCACTCA+AGG | 0.647828 | 1_1:-64668251 | Msa0036220:CDS |
| AGCAGATTGATCCAGAGACA+GGG | 0.648176 | 1_1:-64666960 | Msa0036220:CDS |
| TCATAGAATTGTTGGAACGG+AGG | 0.650365 | 1_1:+64669463 | None:intergenic |
| TGGAAGATGACGGAAATGGT+TGG | 0.652438 | 1_1:+64669590 | None:intergenic |
| TGCTGCTGGAGAAGAAGATG+AGG | 0.655391 | 1_1:+64669901 | None:intergenic |
| TCATAATCCACAAAGCAATG+AGG | 0.660990 | 1_1:-64668335 | Msa0036220:CDS |
| GGAGAGGTAAATCCTTCTGA+GGG | 0.661166 | 1_1:-64667093 | Msa0036220:CDS |
| ATTCCAGGAATGAGGCCAGG+TGG | 0.661531 | 1_1:+64667252 | None:intergenic |
| GGTGGAAACAGTGGATATGG+AGG | 0.661720 | 1_1:+64667270 | None:intergenic |
| GAATCTCAAGTACGAAAGGG+AGG | 0.666218 | 1_1:-64667012 | Msa0036220:CDS |
| GACCCTGGAAAAGCACTAGG+AGG | 0.674781 | 1_1:+64667360 | None:intergenic |
| TAATGAGAAGGGAATGCAGG+AGG | 0.678630 | 1_1:+64669868 | None:intergenic |
| TGACAAACTTGTTGAGTACG+CGG | 0.679603 | 1_1:-64669758 | Msa0036220:CDS |
| CAAACCATATTGTCCAGCAG+TGG | 0.683579 | 1_1:-64667488 | Msa0036220:CDS |
| ATTGCCCCAGAAGTTTATCG+GGG | 0.703156 | 1_1:+64667418 | None:intergenic |
| GAGAAACATCAACAAAGACA+AGG | 0.705171 | 1_1:+64666688 | None:intergenic |
| AAGACTGATGATGTTGATGG+TGG | 0.709130 | 1_1:+64669431 | None:intergenic |
| GAAGTGTAGATCGCAAGCCG+GGG | 0.710751 | 1_1:-64666924 | Msa0036220:CDS |
| ACCGCCCCGATAAACTTCTG+GGG | 0.712204 | 1_1:-64667422 | Msa0036220:CDS |
| ATCATCATAGAGAGTAGACG+AGG | 0.718752 | 1_1:-64670201 | Msa0036220:five_prime_UTR |
| GATGGTGGTACAGTTGACGG+TGG | 0.766335 | 1_1:+64667156 | None:intergenic |
| TTATCAAGTCGACCCCAAGG+TGG | 0.790143 | 1_1:-64669622 | Msa0036220:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATATATGATATACTCTT+AGG | - | chr1_1:64667676-64667695 | Msa0036220:intron | 15.0% |
| !!! | CTCAATTGAAAATTTAAAAT+AGG | - | chr1_1:64668013-64668032 | Msa0036220:intron | 15.0% |
| !!! | GAAACATTTTTTTTAAAAGA+CGG | + | chr1_1:64668746-64668765 | None:intergenic | 15.0% |
| !!! | TTATTTTATAATGAATGACA+AGG | - | chr1_1:64668933-64668952 | Msa0036220:intron | 15.0% |
| !! | ATTTAAAAAAAACAATTGGT+CGG | + | chr1_1:64669086-64669105 | None:intergenic | 15.0% |
| !!! | TGTCATTTAAAAAAAACAAT+TGG | + | chr1_1:64669090-64669109 | None:intergenic | 15.0% |
| !! | AATGTTCTTAACAATTTGAA+TGG | - | chr1_1:64667427-64667446 | Msa0036220:CDS | 20.0% |
| !!! | TTTTTAATGTTAATGCATCA+TGG | - | chr1_1:64668605-64668624 | Msa0036220:intron | 20.0% |
| !! | TTCACAAGTTATAATACTTA+CGG | + | chr1_1:64668719-64668738 | None:intergenic | 20.0% |
| !!! | AAAAAAAAAAAAAAGGCACA+AGG | - | chr1_1:64668979-64668998 | Msa0036220:intron | 20.0% |
| !!! | TCCAAGTTTTTTAAAGAAAT+TGG | - | chr1_1:64669626-64669645 | Msa0036220:CDS | 20.0% |
| !!! | TCCAATTTCTTTAAAAAACT+TGG | + | chr1_1:64669630-64669649 | None:intergenic | 20.0% |
| !! | TAACACAACTTATTATGATA+CGG | + | chr1_1:64669998-64670017 | None:intergenic | 20.0% |
| !! | ATCATAATAAGTTGTGTTAT+TGG | - | chr1_1:64669999-64670018 | Msa0036220:CDS | 20.0% |
| !!! | TCATAATAAGTTGTGTTATT+GGG | - | chr1_1:64670000-64670019 | Msa0036220:CDS | 20.0% |
| !! | TTGATAACCAAAGCTTAAAA+CGG | + | chr1_1:64667105-64667124 | None:intergenic | 25.0% |
| ! | TAACAATTTGAATGGTACAA+AGG | - | chr1_1:64667435-64667454 | Msa0036220:CDS | 25.0% |
| !! | ATTTAAAATAGGCAAACAGA+TGG | - | chr1_1:64668024-64668043 | Msa0036220:intron | 25.0% |
| !! | TTTAAAATAGGCAAACAGAT+GGG | - | chr1_1:64668025-64668044 | Msa0036220:intron | 25.0% |
| ! | TGTAAATTTATCCATGAATC+AGG | - | chr1_1:64668841-64668860 | Msa0036220:intron | 25.0% |
| ! | GTAAATTTATCCATGAATCA+GGG | - | chr1_1:64668842-64668861 | Msa0036220:intron | 25.0% |
| !!! | GTTTTTTAAAGAAATTGGAG+AGG | - | chr1_1:64669631-64669650 | Msa0036220:CDS | 25.0% |
| ! | ATGATGTATATTCATCTTAC+AGG | - | chr1_1:64669903-64669922 | Msa0036220:CDS | 25.0% |
| ATGAGTCTCTTAACGATATA+TGG | + | chr1_1:64666575-64666594 | None:intergenic | 30.0% | |
| ATATATCGTTAAGAGACTCA+TGG | - | chr1_1:64666574-64666593 | Msa0036220:three_prime_UTR | 30.0% | |
| !!! | TCAATTCTCTTTTGAAGTTC+GGG | + | chr1_1:64666965-64666984 | None:intergenic | 30.0% |
| !!! | GTCAATTCTCTTTTGAAGTT+CGG | + | chr1_1:64666966-64666985 | None:intergenic | 30.0% |
| AAATCATGGCTTCAAATTCA+GGG | + | chr1_1:64667018-64667037 | None:intergenic | 30.0% | |
| CCAAAGAGAAAACTATAAGA+AGG | + | chr1_1:64667061-64667080 | None:intergenic | 30.0% | |
| ! | CCTTCTTATAGTTTTCTCTT+TGG | - | chr1_1:64667058-64667077 | Msa0036220:CDS | 30.0% |
| ! | TCTTATAGTTTTCTCTTTGG+TGG | - | chr1_1:64667061-64667080 | Msa0036220:CDS | 30.0% |
| ! | CTTATAGTTTTCTCTTTGGT+GGG | - | chr1_1:64667062-64667081 | Msa0036220:CDS | 30.0% |
| ! | TTATAGTTTTCTCTTTGGTG+GGG | - | chr1_1:64667063-64667082 | Msa0036220:CDS | 30.0% |
| !! | CTTATTACCGTTTTAAGCTT+TGG | - | chr1_1:64667095-64667114 | Msa0036220:CDS | 30.0% |
| TGATCATAGAATTGTTGGAA+CGG | + | chr1_1:64667283-64667302 | None:intergenic | 30.0% | |
| GTTGTTGATCATAGAATTGT+TGG | + | chr1_1:64667288-64667307 | None:intergenic | 30.0% | |
| ! | ATCAACATCATCAGTCTTTT+GGG | - | chr1_1:64667314-64667333 | Msa0036220:CDS | 30.0% |
| GTACAAAGGAATCCATTAAA+GGG | - | chr1_1:64667449-64667468 | Msa0036220:CDS | 30.0% | |
| TACAAAGGAATCCATTAAAG+GGG | - | chr1_1:64667450-64667469 | Msa0036220:CDS | 30.0% | |
| ! | TGTCAAAATAAGCTTGTTCT+TGG | - | chr1_1:64667769-64667788 | Msa0036220:intron | 30.0% |
| ! | AAATAAGCTTGTTCTTGGTA+TGG | - | chr1_1:64667774-64667793 | Msa0036220:intron | 30.0% |
| ! | AATAAGCTTGTTCTTGGTAT+GGG | - | chr1_1:64667775-64667794 | Msa0036220:intron | 30.0% |
| AAAATGAAGCAAATGAGACT+CGG | + | chr1_1:64667958-64667977 | None:intergenic | 30.0% | |
| TTCAATTGAGATTCAAGCTT+AGG | + | chr1_1:64668003-64668022 | None:intergenic | 30.0% | |
| TTAAAATAGGCAAACAGATG+GGG | - | chr1_1:64668026-64668045 | Msa0036220:intron | 30.0% | |
| GTTTCTACTTTCTTGTTCAA+AGG | - | chr1_1:64668076-64668095 | Msa0036220:intron | 30.0% | |
| AAAAATTCAATCCTTTGACC+TGG | + | chr1_1:64668136-64668155 | None:intergenic | 30.0% | |
| AATTAGTAACACAAAGGTCA+AGG | + | chr1_1:64668293-64668312 | None:intergenic | 30.0% | |
| ! | TTGACCTTTGTGTTACTAAT+TGG | - | chr1_1:64668292-64668311 | Msa0036220:CDS | 30.0% |
| TAAAACAGGTTTAAACGCAA+GGG | + | chr1_1:64668362-64668381 | None:intergenic | 30.0% | |
| ACTGAATGATTTCCAAATTG+TGG | - | chr1_1:64668663-64668682 | Msa0036220:intron | 30.0% | |
| CTGAATGATTTCCAAATTGT+GGG | - | chr1_1:64668664-64668683 | Msa0036220:intron | 30.0% | |
| TGAATGATTTCCAAATTGTG+GGG | - | chr1_1:64668665-64668684 | Msa0036220:intron | 30.0% | |
| !! | ACTCGATATTGATTGTTTTG+AGG | - | chr1_1:64669165-64669184 | Msa0036220:CDS | 30.0% |
| !!! | CTCGATATTGATTGTTTTGA+GGG | - | chr1_1:64669166-64669185 | Msa0036220:CDS | 30.0% |
| ! | ACTCTTTGAAGAATTTCTGA+TGG | + | chr1_1:64669605-64669624 | None:intergenic | 30.0% |
| TCTCTTGATTCAGAATTCAT+AGG | + | chr1_1:64669674-64669693 | None:intergenic | 30.0% | |
| ACTTATTATGATACGGTAAC+AGG | + | chr1_1:64669991-64670010 | None:intergenic | 30.0% | |
| !! | ATGATCCAATGTTTTTGTCA+CGG | - | chr1_1:64670098-64670117 | Msa0036220:CDS | 30.0% |
| GTTGCATTGCATGATGAAAA+GGG | + | chr1_1:64666790-64666809 | None:intergenic | 35.0% | |
| TGTTGCATTGCATGATGAAA+AGG | + | chr1_1:64666791-64666810 | None:intergenic | 35.0% | |
| GCAGAATCAAAAAATGGTGA+TGG | + | chr1_1:64666914-64666933 | None:intergenic | 35.0% | |
| CAAATCATGGCTTCAAATTC+AGG | + | chr1_1:64667019-64667038 | None:intergenic | 35.0% | |
| !!! | TCGTTGCTTTTCACAAATCA+TGG | + | chr1_1:64667032-64667051 | None:intergenic | 35.0% |
| ATCATTGACATGGAAGATGA+CGG | + | chr1_1:64667163-64667182 | None:intergenic | 35.0% | |
| ! | CAAAAGACTGATGATGTTGA+TGG | + | chr1_1:64667315-64667334 | None:intergenic | 35.0% |
| ! | CATCAACATCATCAGTCTTT+TGG | - | chr1_1:64667313-64667332 | Msa0036220:CDS | 35.0% |
| AGTCATCCAAGTCTTTCAAA+GGG | - | chr1_1:64667362-64667381 | Msa0036220:CDS | 35.0% | |
| GGTACAAAGGAATCCATTAA+AGG | - | chr1_1:64667448-64667467 | Msa0036220:CDS | 35.0% | |
| ! | CAAAAAGAATGTCGTTTGCA+AGG | + | chr1_1:64667585-64667604 | None:intergenic | 35.0% |
| ! | CAAACGACATTCTTTTTGAC+AGG | - | chr1_1:64667587-64667606 | Msa0036220:intron | 35.0% |
| TTGTTCTTGGTATGGGTTTA+TGG | - | chr1_1:64667782-64667801 | Msa0036220:intron | 35.0% | |
| AATCAGGCAAAAAATGCAGA+CGG | + | chr1_1:64667816-64667835 | None:intergenic | 35.0% | |
| AAATGAAGCAAATGAGACTC+GGG | + | chr1_1:64667957-64667976 | None:intergenic | 35.0% | |
| ATTGAGATTCAAGCTTAGGA+TGG | + | chr1_1:64667999-64668018 | None:intergenic | 35.0% | |
| ! | CTGGAAAGTATAAACAACCA+AGG | + | chr1_1:64668117-64668136 | None:intergenic | 35.0% |
| CTTGGTTGTTTATACTTTCC+AGG | - | chr1_1:64668115-64668134 | Msa0036220:intron | 35.0% | |
| GTTTATACTTTCCAGGTCAA+AGG | - | chr1_1:64668122-64668141 | Msa0036220:intron | 35.0% | |
| AGCATAGCAAAATAAGCTTG+AGG | + | chr1_1:64668215-64668234 | None:intergenic | 35.0% | |
| TAATTGGCAGCTTAAATCGA+AGG | - | chr1_1:64668308-64668327 | Msa0036220:CDS | 35.0% | |
| AATTGGCAGCTTAAATCGAA+GGG | - | chr1_1:64668309-64668328 | Msa0036220:CDS | 35.0% | |
| CTAAAACAGGTTTAAACGCA+AGG | + | chr1_1:64668363-64668382 | None:intergenic | 35.0% | |
| ! | CTTGCGTTTAAACCTGTTTT+AGG | - | chr1_1:64668361-64668380 | Msa0036220:CDS | 35.0% |
| TCATAATCCACAAAGCAATG+AGG | - | chr1_1:64668405-64668424 | Msa0036220:CDS | 35.0% | |
| CTATATTCCTCATTGCTTTG+TGG | + | chr1_1:64668415-64668434 | None:intergenic | 35.0% | |
| CACAAAGCAATGAGGAATAT+AGG | - | chr1_1:64668413-64668432 | Msa0036220:CDS | 35.0% | |
| TAGGAAAAGATTGCAGCAAA+TGG | - | chr1_1:64668432-64668451 | Msa0036220:intron | 35.0% | |
| AGAGACTATATCTTCACTCA+AGG | - | chr1_1:64668489-64668508 | Msa0036220:intron | 35.0% | |
| TCAAGGTTGAGATGTTTAGT+GGG | - | chr1_1:64668506-64668525 | Msa0036220:intron | 35.0% | |
| ! | GCAGGAAAAGAATTTGTTTG+TGG | + | chr1_1:64668532-64668551 | None:intergenic | 35.0% |
| ! | TTCTTTTCCTGCAACACAAA+AGG | - | chr1_1:64668540-64668559 | Msa0036220:intron | 35.0% |
| CAAATTATTGCCCCACAATT+TGG | + | chr1_1:64668678-64668697 | None:intergenic | 35.0% | |
| !! | TTGTGGGGCAATAATTTGTT+TGG | - | chr1_1:64668680-64668699 | Msa0036220:intron | 35.0% |
| TTTCTTTCAGCTTTCAACAC+CGG | - | chr1_1:64668781-64668800 | Msa0036220:intron | 35.0% | |
| ATAATGAATGACAAGGCACA+AGG | - | chr1_1:64668940-64668959 | Msa0036220:intron | 35.0% | |
| CTTATATGCAAATGTCATCC+TGG | + | chr1_1:64669042-64669061 | None:intergenic | 35.0% | |
| ! | AAACAATTGGTCGGATTAGA+TGG | + | chr1_1:64669077-64669096 | None:intergenic | 35.0% |
| ACAACTTAGTTTAGTGCACT+TGG | - | chr1_1:64669107-64669126 | Msa0036220:intron | 35.0% | |
| ATGGTTAGAAAGATGCAGAT+TGG | - | chr1_1:64669509-64669528 | Msa0036220:CDS | 35.0% | |
| TCATAGTTGGGATATCCAAA+GGG | + | chr1_1:64669562-64669581 | None:intergenic | 35.0% | |
| ATCATAGTTGGGATATCCAA+AGG | + | chr1_1:64669563-64669582 | None:intergenic | 35.0% | |
| ! | CTTTGAAGAATTTCTGATGG+TGG | + | chr1_1:64669602-64669621 | None:intergenic | 35.0% |
| GATGAAGATGATGAATACGA+TGG | - | chr1_1:64669692-64669711 | Msa0036220:CDS | 35.0% | |
| AGAGAATCTCAAGTACGAAA+GGG | - | chr1_1:64669725-64669744 | Msa0036220:CDS | 35.0% | |
| GAGAAACATCAACAAAGACA+AGG | + | chr1_1:64670055-64670074 | None:intergenic | 35.0% | |
| ATCATCCGTGACAAAAACAT+TGG | + | chr1_1:64670106-64670125 | None:intergenic | 35.0% | |
| !! | ATGTTTTTGTCACGGATGAT+TGG | - | chr1_1:64670106-64670125 | Msa0036220:CDS | 35.0% |
| CTTTGACAGAAATGAAGTTC+TGG | - | chr1_1:64670139-64670158 | Msa0036220:CDS | 35.0% | |
| ATCATCATAGAGAGTAGACG+AGG | - | chr1_1:64666539-64666558 | Msa0036220:three_prime_UTR | 40.0% | |
| GCAGCAGCATAATCATGATT+CGG | + | chr1_1:64666605-64666624 | None:intergenic | 40.0% | |
| AGAAGGAAACTGCTGATGTT+GGG | + | chr1_1:64666702-64666721 | None:intergenic | 40.0% | |
| !! | AAATGGTGATGGAGCAAGAT+GGG | + | chr1_1:64666903-64666922 | None:intergenic | 40.0% |
| !! | AAAATGGTGATGGAGCAAGA+TGG | + | chr1_1:64666904-64666923 | None:intergenic | 40.0% |
| GGTGGAGCAGAATCAAAAAA+TGG | + | chr1_1:64666920-64666939 | None:intergenic | 40.0% | |
| !!! | TTTTGAAGTTCGGGATCAGA+AGG | + | chr1_1:64666956-64666975 | None:intergenic | 40.0% |
| !! | TGACAAACTTGTTGAGTACG+CGG | - | chr1_1:64666982-64667001 | Msa0036220:CDS | 40.0% |
| AGAAGGATGGATCATTGACA+TGG | + | chr1_1:64667173-64667192 | None:intergenic | 40.0% | |
| TCATAGGATTAGGAGAAGGA+TGG | + | chr1_1:64667186-64667205 | None:intergenic | 40.0% | |
| CTCATCATAGGATTAGGAGA+AGG | + | chr1_1:64667190-64667209 | None:intergenic | 40.0% | |
| TCATAGAATTGTTGGAACGG+AGG | + | chr1_1:64667280-64667299 | None:intergenic | 40.0% | |
| ! | AAGACTGATGATGTTGATGG+TGG | + | chr1_1:64667312-64667331 | None:intergenic | 40.0% |
| TTGGATGACTGATCATACTC+AGG | + | chr1_1:64667352-64667371 | None:intergenic | 40.0% | |
| CAGTCATCCAAGTCTTTCAA+AGG | - | chr1_1:64667361-64667380 | Msa0036220:CDS | 40.0% | |
| ATTGCAACATCAGATGGAAG+TGG | + | chr1_1:64667397-64667416 | None:intergenic | 40.0% | |
| ACTTCCATCTGATGTTGCAA+TGG | - | chr1_1:64667396-64667415 | Msa0036220:CDS | 40.0% | |
| AGTTCCATTGCAACATCAGA+TGG | + | chr1_1:64667403-64667422 | None:intergenic | 40.0% | |
| TAGCAGAGACTCTTAGAGAT+AGG | - | chr1_1:64667515-64667534 | Msa0036220:intron | 40.0% | |
| AGCAGAGACTCTTAGAGATA+GGG | - | chr1_1:64667516-64667535 | Msa0036220:intron | 40.0% | |
| ATCAGGCAAAAAATGCAGAC+GGG | + | chr1_1:64667815-64667834 | None:intergenic | 40.0% | |
| !!! | GTCTGCATTTTTTGCCTGAT+TGG | - | chr1_1:64667815-64667834 | Msa0036220:intron | 40.0% |
| ! | TGATTGGTGCGTTAGTTTCA+CGG | - | chr1_1:64667831-64667850 | Msa0036220:intron | 40.0% |
| TGATAAGAGTCCTGTCTAGT+AGG | - | chr1_1:64667865-64667884 | Msa0036220:intron | 40.0% | |
| AGTTTCAACTCCTACTAGAC+AGG | + | chr1_1:64667878-64667897 | None:intergenic | 40.0% | |
| !! | AGATGGGGTGGATTTTGTTT+GGG | - | chr1_1:64668041-64668060 | Msa0036220:intron | 40.0% |
| ! | TGTTGTTGCAAGTTTTGCCT+TGG | - | chr1_1:64668177-64668196 | Msa0036220:CDS | 40.0% |
| GCTGCCAATTAGTAACACAA+AGG | + | chr1_1:64668299-64668318 | None:intergenic | 40.0% | |
| GAAAAGATTGCAGCAAATGG+TGG | - | chr1_1:64668435-64668454 | Msa0036220:intron | 40.0% | |
| CTCAAGGTTGAGATGTTTAG+TGG | - | chr1_1:64668505-64668524 | Msa0036220:intron | 40.0% | |
| ! | GATAAGTCCTTTTGTGTTGC+AGG | + | chr1_1:64668550-64668569 | None:intergenic | 40.0% |
| TTCTTTCAGCTTTCAACACC+GGG | - | chr1_1:64668782-64668801 | Msa0036220:intron | 40.0% | |
| GAGTACATGATTACTAACCG+TGG | - | chr1_1:64669013-64669032 | Msa0036220:intron | 40.0% | |
| ! | GGTCGGATTAGATGGTAATA+TGG | + | chr1_1:64669069-64669088 | None:intergenic | 40.0% |
| ATAATCTTTCTCGCGTTTGC+AGG | - | chr1_1:64669215-64669234 | Msa0036220:CDS | 40.0% | |
| ! | GAGTTCTGGTACAATTGTCT+TGG | - | chr1_1:64669289-64669308 | Msa0036220:CDS | 40.0% |
| AGATTGCCCCAGAAGTTTAT+CGG | + | chr1_1:64669327-64669346 | None:intergenic | 40.0% | |
| AACAGAAGATGGTATACCCA+TGG | + | chr1_1:64669405-64669424 | None:intergenic | 40.0% | |
| ! | TTGGTTGGTTGAACAGAAGA+TGG | + | chr1_1:64669416-64669435 | None:intergenic | 40.0% |
| TTCTAACCATTCCAGGAATG+AGG | + | chr1_1:64669499-64669518 | None:intergenic | 40.0% | |
| TGCATCTTTCTAACCATTCC+AGG | + | chr1_1:64669506-64669525 | None:intergenic | 40.0% | |
| AGAAAGATGCAGATTGGTAG+TGG | - | chr1_1:64669515-64669534 | Msa0036220:CDS | 40.0% | |
| ! | GAAAGATGCAGATTGGTAGT+GGG | - | chr1_1:64669516-64669535 | Msa0036220:CDS | 40.0% |
| !! | AAAGATGCAGATTGGTAGTG+GGG | - | chr1_1:64669517-64669536 | Msa0036220:CDS | 40.0% |
| AAGGGCTCATAGGAGAATAA+GGG | + | chr1_1:64669544-64669563 | None:intergenic | 40.0% | |
| AAAGGGCTCATAGGAGAATA+AGG | + | chr1_1:64669545-64669564 | None:intergenic | 40.0% | |
| TTATTCTCCTATGAGCCCTT+TGG | - | chr1_1:64669544-64669563 | Msa0036220:CDS | 40.0% | |
| TTGACGGTGGTATCATAGTT+GGG | + | chr1_1:64669574-64669593 | None:intergenic | 40.0% | |
| GAGAGAATCTCAAGTACGAA+AGG | - | chr1_1:64669724-64669743 | Msa0036220:CDS | 40.0% | |
| !! | TCATACTGACTCACCTCATT+TGG | + | chr1_1:64669884-64669903 | None:intergenic | 40.0% |
| ! | AGTTGTGTTATTGGGTCACT+TGG | - | chr1_1:64670008-64670027 | Msa0036220:CDS | 40.0% |
| ! | GTTGTGTTATTGGGTCACTT+GGG | - | chr1_1:64670009-64670028 | Msa0036220:CDS | 40.0% |
| TGCTGTTGCATATTAGCAGC+CGG | + | chr1_1:64666659-64666678 | None:intergenic | 45.0% | |
| GAAGGAAACTGCTGATGTTG+GGG | + | chr1_1:64666701-64666720 | None:intergenic | 45.0% | |
| CAGAAGGAAACTGCTGATGT+TGG | + | chr1_1:64666703-64666722 | None:intergenic | 45.0% | |
| AAAGGGAACTGCTGCATAGA+GGG | + | chr1_1:64666773-64666792 | None:intergenic | 45.0% | |
| AAAAGGGAACTGCTGCATAG+AGG | + | chr1_1:64666774-64666793 | None:intergenic | 45.0% | |
| TAATGAGAAGGGAATGCAGG+AGG | + | chr1_1:64666875-64666894 | None:intergenic | 45.0% | |
| GGATAATGAGAAGGGAATGC+AGG | + | chr1_1:64666878-64666897 | None:intergenic | 45.0% | |
| GATGGGGAGGATAATGAGAA+GGG | + | chr1_1:64666886-64666905 | None:intergenic | 45.0% | |
| AGATGGGGAGGATAATGAGA+AGG | + | chr1_1:64666887-64666906 | None:intergenic | 45.0% | |
| !! | AATGGTGATGGAGCAAGATG+GGG | + | chr1_1:64666902-64666921 | None:intergenic | 45.0% |
| GTTGAGTACGCGGTGAAAAA+TGG | - | chr1_1:64666992-64667011 | Msa0036220:CDS | 45.0% | |
| ! | TAGTTTTCTCTTTGGTGGGG+AGG | - | chr1_1:64667066-64667085 | Msa0036220:CDS | 45.0% |
| ! | AGTTTTCTCTTTGGTGGGGA+GGG | - | chr1_1:64667067-64667086 | Msa0036220:CDS | 45.0% |
| TTGGTTGAATGGACCACCTT+GGG | + | chr1_1:64667134-64667153 | None:intergenic | 45.0% | |
| ! | GACGGAAATGGTTGGTTGAA+TGG | + | chr1_1:64667145-64667164 | None:intergenic | 45.0% |
| !! | TGGAAGATGACGGAAATGGT+TGG | + | chr1_1:64667153-64667172 | None:intergenic | 45.0% |
| !! | GACATGGAAGATGACGGAAA+TGG | + | chr1_1:64667157-64667176 | None:intergenic | 45.0% |
| ! | GATGGGCTCATCATAGGATT+AGG | + | chr1_1:64667196-64667215 | None:intergenic | 45.0% |
| ATTCCGATCGGATTCATTGG+AGG | + | chr1_1:64667229-64667248 | None:intergenic | 45.0% | |
| CCAATTCCGATCGGATTCAT+TGG | + | chr1_1:64667232-64667251 | None:intergenic | 45.0% | |
| CCAATGAATCCGATCGGAAT+TGG | - | chr1_1:64667229-64667248 | Msa0036220:CDS | 45.0% | |
| TAGAATTGTTGGAACGGAGG+CGG | + | chr1_1:64667277-64667296 | None:intergenic | 45.0% | |
| ! | CATCAGTCTTTTGGGCTTCA+TGG | - | chr1_1:64667322-64667341 | Msa0036220:CDS | 45.0% |
| AACATCAGATGGAAGTGGTC+CGG | + | chr1_1:64667392-64667411 | None:intergenic | 45.0% | |
| CCAGAGTTTAGCCCCTTTAA+TGG | + | chr1_1:64667464-64667483 | None:intergenic | 45.0% | |
| CCATTAAAGGGGCTAAACTC+TGG | - | chr1_1:64667461-64667480 | Msa0036220:CDS | 45.0% | |
| TCAGGCAAAAAATGCAGACG+GGG | + | chr1_1:64667814-64667833 | None:intergenic | 45.0% | |
| GTGAAACTAACGCACCAATC+AGG | + | chr1_1:64667832-64667851 | None:intergenic | 45.0% | |
| CTATATGCACTTGTGCGGTA+AGG | + | chr1_1:64667918-64667937 | None:intergenic | 45.0% | |
| AAATAGGCAAACAGATGGGG+TGG | - | chr1_1:64668029-64668048 | Msa0036220:intron | 45.0% | |
| !! | CAGATGGGGTGGATTTTGTT+TGG | - | chr1_1:64668040-64668059 | Msa0036220:intron | 45.0% |
| ! | GGCTTGTGATTTTGTTGCCT+TGG | - | chr1_1:64668097-64668116 | Msa0036220:intron | 45.0% |
| TGAGGTGAATGATCTAGCCA+AGG | + | chr1_1:64668197-64668216 | None:intergenic | 45.0% | |
| GCAAGCATAGAGCCTAAAAC+AGG | + | chr1_1:64668376-64668395 | None:intergenic | 45.0% | |
| TCTTCTGCTTCAGCAGATTC+AGG | - | chr1_1:64668568-64668587 | Msa0036220:intron | 45.0% | |
| TCTTTCAGCTTTCAACACCG+GGG | - | chr1_1:64668783-64668802 | Msa0036220:intron | 45.0% | |
| AAGTTACTCAAGTCTTGCCC+CGG | + | chr1_1:64668803-64668822 | None:intergenic | 45.0% | |
| ! | AAGTAGCTTGCCCTGATTCA+TGG | + | chr1_1:64668855-64668874 | None:intergenic | 45.0% |
| AAATGTCATCCTGGTGACCA+CGG | + | chr1_1:64669033-64669052 | None:intergenic | 45.0% | |
| CACTGCTGGACAATATGGTT+TGG | + | chr1_1:64669254-64669273 | None:intergenic | 45.0% | |
| CAAACCATATTGTCCAGCAG+TGG | - | chr1_1:64669252-64669271 | Msa0036220:CDS | 45.0% | |
| CAAGCTGATAGGATGAGTTC+TGG | - | chr1_1:64669275-64669294 | Msa0036220:CDS | 45.0% | |
| ATTGCCCCAGAAGTTTATCG+GGG | + | chr1_1:64669325-64669344 | None:intergenic | 45.0% | |
| GATTGCCCCAGAAGTTTATC+GGG | + | chr1_1:64669326-64669345 | None:intergenic | 45.0% | |
| !! | GATGATGGAGGTTGATTGGT+TGG | + | chr1_1:64669431-64669450 | None:intergenic | 45.0% |
| ACCAATCAACCTCCATCATC+CGG | - | chr1_1:64669431-64669450 | Msa0036220:CDS | 45.0% | |
| GTTGACGGTGGTATCATAGT+TGG | + | chr1_1:64669575-64669594 | None:intergenic | 45.0% | |
| !! | TCTGATGGTGGTACAGTTGA+CGG | + | chr1_1:64669590-64669609 | None:intergenic | 45.0% |
| TGGAGAGGTAAATCCTTCTG+AGG | - | chr1_1:64669646-64669665 | Msa0036220:CDS | 45.0% | |
| GGAGAGGTAAATCCTTCTGA+GGG | - | chr1_1:64669647-64669666 | Msa0036220:CDS | 45.0% | |
| GAATTCATAGGACCCTCAGA+AGG | + | chr1_1:64669662-64669681 | None:intergenic | 45.0% | |
| GAATCTCAAGTACGAAAGGG+AGG | - | chr1_1:64669728-64669747 | Msa0036220:CDS | 45.0% | |
| ATCAATCTGCTGCAAGTGTG+GGG | + | chr1_1:64669771-64669790 | None:intergenic | 45.0% | |
| GATCAATCTGCTGCAAGTGT+GGG | + | chr1_1:64669772-64669791 | None:intergenic | 45.0% | |
| AGCAGATTGATCCAGAGACA+GGG | - | chr1_1:64669780-64669799 | Msa0036220:CDS | 45.0% | |
| CTTGCGATCTACACTTCCAT+CGG | + | chr1_1:64669813-64669832 | None:intergenic | 45.0% | |
| CTGACTCACCTCATTTGGAT+CGG | + | chr1_1:64669879-64669898 | None:intergenic | 45.0% | |
| ! | GCAAAGCTTGAAAGCACACT+TGG | - | chr1_1:64670161-64670180 | Msa0036220:exon | 45.0% |
| !! | TCAAAAAAAAAAAAAAAAAA+AGG | - | chr1_1:64668972-64668991 | Msa0036220:intron | 5.0% |
| TTATGCTGCTGCGTCTGCTA+TGG | - | chr1_1:64666613-64666632 | Msa0036220:three_prime_UTR | 50.0% | |
| ATGCAACAGCAGCAGCAGTT+TGG | - | chr1_1:64666668-64666687 | Msa0036220:three_prime_UTR | 50.0% | |
| CAGTTTCCTTCTGCGATGCA+TGG | - | chr1_1:64666710-64666729 | Msa0036220:three_prime_UTR | 50.0% | |
| CAACATCAGCTGCACCATCA+AGG | - | chr1_1:64666806-64666825 | Msa0036220:CDS | 50.0% | |
| GAAGAAGATGAGGTGGAGGA+GGG | + | chr1_1:64666832-64666851 | None:intergenic | 50.0% | |
| AGAAGAAGATGAGGTGGAGG+AGG | + | chr1_1:64666833-64666852 | None:intergenic | 50.0% | |
| TGGAGAAGAAGATGAGGTGG+AGG | + | chr1_1:64666836-64666855 | None:intergenic | 50.0% | |
| TGCTGGAGAAGAAGATGAGG+TGG | + | chr1_1:64666839-64666858 | None:intergenic | 50.0% | |
| TGCTGCTGGAGAAGAAGATG+AGG | + | chr1_1:64666842-64666861 | None:intergenic | 50.0% | |
| TGAAGTTCGGGATCAGAAGG+AGG | + | chr1_1:64666953-64666972 | None:intergenic | 50.0% | |
| TGGTTATCAAGTCGACCCCA+AGG | - | chr1_1:64667115-64667134 | Msa0036220:CDS | 50.0% | |
| TTATCAAGTCGACCCCAAGG+TGG | - | chr1_1:64667118-64667137 | Msa0036220:CDS | 50.0% | |
| TGGTTGAATGGACCACCTTG+GGG | + | chr1_1:64667133-64667152 | None:intergenic | 50.0% | |
| GTTGGTTGAATGGACCACCT+TGG | + | chr1_1:64667135-64667154 | None:intergenic | 50.0% | |
| ! | CTAGGAGATGGGCTCATCAT+AGG | + | chr1_1:64667202-64667221 | None:intergenic | 50.0% |
| ATGATGAGCCCATCTCCTAG+TGG | - | chr1_1:64667202-64667221 | Msa0036220:CDS | 50.0% | |
| TTGGAGGACCACTAGGAGAT+GGG | + | chr1_1:64667213-64667232 | None:intergenic | 50.0% | |
| ATTGGAGGACCACTAGGAGA+TGG | + | chr1_1:64667214-64667233 | None:intergenic | 50.0% | |
| GGATTCATTGGAGGACCACT+AGG | + | chr1_1:64667220-64667239 | None:intergenic | 50.0% | |
| GGTCCTCCAATGAATCCGAT+CGG | - | chr1_1:64667223-64667242 | Msa0036220:CDS | 50.0% | |
| GGCGAAGATCCAATTCCGAT+CGG | + | chr1_1:64667241-64667260 | None:intergenic | 50.0% | |
| AGAATTGTTGGAACGGAGGC+GGG | + | chr1_1:64667276-64667295 | None:intergenic | 50.0% | |
| AAGTCTTTCAAAGGGCTCCC+CGG | - | chr1_1:64667370-64667389 | Msa0036220:CDS | 50.0% | |
| ACATCAGATGGAAGTGGTCC+GGG | + | chr1_1:64667391-64667410 | None:intergenic | 50.0% | |
| TCTGCTAGAGCTGGTGCAAA+TGG | + | chr1_1:64667502-64667521 | None:intergenic | 50.0% | |
| CTAAGAGTCTCTGCTAGAGC+TGG | + | chr1_1:64667511-64667530 | None:intergenic | 50.0% | |
| CAGGCAAAAAATGCAGACGG+GGG | + | chr1_1:64667813-64667832 | None:intergenic | 50.0% | |
| GTGCGCTATATGCACTTGTG+CGG | + | chr1_1:64667923-64667942 | None:intergenic | 50.0% | |
| CACTCACGACCTTGACAATG+AGG | - | chr1_1:64668336-64668355 | Msa0036220:CDS | 50.0% | |
| ! | TGCAGCAAATGGTGGAGTTC+TGG | - | chr1_1:64668443-64668462 | Msa0036220:intron | 50.0% |
| ! | GCAGCAAATGGTGGAGTTCT+GGG | - | chr1_1:64668444-64668463 | Msa0036220:intron | 50.0% |
| !! | GGAGTTCTGGGCTTCTAAAG+AGG | - | chr1_1:64668456-64668475 | Msa0036220:intron | 50.0% |
| GATTACTAACCGTGGTCACC+AGG | - | chr1_1:64669021-64669040 | Msa0036220:intron | 50.0% | |
| CTTGCCACTGCTGGACAATA+TGG | + | chr1_1:64669259-64669278 | None:intergenic | 50.0% | |
| ! | CTCCTCCTAGTGCTTTTCCA+GGG | - | chr1_1:64669378-64669397 | Msa0036220:CDS | 50.0% |
| !! | ATGGACCCTGGAAAAGCACT+AGG | + | chr1_1:64669386-64669405 | None:intergenic | 50.0% |
| ! | TAGTGCTTTTCCAGGGTCCA+TGG | - | chr1_1:64669385-64669404 | Msa0036220:CDS | 50.0% |
| ! | AGTGCTTTTCCAGGGTCCAT+GGG | - | chr1_1:64669386-64669405 | Msa0036220:CDS | 50.0% |
| AGGTAATTGTTCGCCTGTGC+CGG | + | chr1_1:64669453-64669472 | None:intergenic | 50.0% | |
| GGTGGAAACAGTGGATATGG+AGG | + | chr1_1:64669473-64669492 | None:intergenic | 50.0% | |
| CCAGGTGGAAACAGTGGATA+TGG | + | chr1_1:64669476-64669495 | None:intergenic | 50.0% | |
| CCATATCCACTGTTTCCACC+TGG | - | chr1_1:64669473-64669492 | Msa0036220:CDS | 50.0% | |
| GGGATATCCAAAGGGCTCAT+AGG | + | chr1_1:64669554-64669573 | None:intergenic | 50.0% | |
| TCAATCTGCTGCAAGTGTGG+GGG | + | chr1_1:64669770-64669789 | None:intergenic | 50.0% | |
| GGATCAATCTGCTGCAAGTG+TGG | + | chr1_1:64669773-64669792 | None:intergenic | 50.0% | |
| CAGCAGATTGATCCAGAGAC+AGG | - | chr1_1:64669779-64669798 | Msa0036220:CDS | 50.0% | |
| ATCTACACTTCCATCGGCGT+AGG | + | chr1_1:64669807-64669826 | None:intergenic | 50.0% | |
| ! | TGGAAGTGTAGATCGCAAGC+CGG | - | chr1_1:64669814-64669833 | Msa0036220:CDS | 50.0% |
| ATCCATGAGTGCTAGAGCGA+CGG | - | chr1_1:64669952-64669971 | Msa0036220:CDS | 50.0% | |
| GGTCACTTGGGTGTTAGACT+AGG | - | chr1_1:64670021-64670040 | Msa0036220:CDS | 50.0% | |
| GTATGCTCAGCAACTGCGAC+CGG | - | chr1_1:64666637-64666656 | Msa0036220:three_prime_UTR | 55.0% | |
| ! | GGTCCACCTTTTATACCCCC+TGG | - | chr1_1:64666731-64666750 | Msa0036220:three_prime_UTR | 55.0% |
| ! | GGACCAGGGGGTATAAAAGG+TGG | + | chr1_1:64666737-64666756 | None:intergenic | 55.0% |
| ! | CCTTTTATACCCCCTGGTCC+CGG | - | chr1_1:64666737-64666756 | Msa0036220:three_prime_UTR | 55.0% |
| ATAGAGGGATGTGCAGCACC+GGG | + | chr1_1:64666758-64666777 | None:intergenic | 55.0% | |
| CATAGAGGGATGTGCAGCAC+CGG | + | chr1_1:64666759-64666778 | None:intergenic | 55.0% | |
| ATCAGAAGGAGGAGCGACTG+GGG | + | chr1_1:64666942-64666961 | None:intergenic | 55.0% | |
| GATCAGAAGGAGGAGCGACT+GGG | + | chr1_1:64666943-64666962 | None:intergenic | 55.0% | |
| ! | GGGGAGCCCTTTGAAAGACT+TGG | + | chr1_1:64667371-64667390 | None:intergenic | 55.0% |
| CATCAGATGGAAGTGGTCCG+GGG | + | chr1_1:64667390-64667409 | None:intergenic | 55.0% | |
| ! | TGGTGCGTTAGTTTCACGGC+AGG | - | chr1_1:64667835-64667854 | Msa0036220:intron | 55.0% |
| ! | TGCGTTAGTTTCACGGCAGG+AGG | - | chr1_1:64667838-64667857 | Msa0036220:intron | 55.0% |
| ACGCAAGGGCCTCATTGTCA+AGG | + | chr1_1:64668348-64668367 | None:intergenic | 55.0% | |
| GCTTCAGCAGATTCAGGTGC+AGG | - | chr1_1:64668574-64668593 | Msa0036220:intron | 55.0% | |
| TCCAGCAGTGGCAAGCTGAT+AGG | - | chr1_1:64669264-64669283 | Msa0036220:CDS | 55.0% | |
| TCCTATCAGCTTGCCACTGC+TGG | + | chr1_1:64669268-64669287 | None:intergenic | 55.0% | |
| AGACCGCCCCGATAAACTTC+TGG | - | chr1_1:64669316-64669335 | Msa0036220:CDS | 55.0% | |
| GACCGCCCCGATAAACTTCT+GGG | - | chr1_1:64669317-64669336 | Msa0036220:CDS | 55.0% | |
| ACCGCCCCGATAAACTTCTG+GGG | - | chr1_1:64669318-64669337 | Msa0036220:CDS | 55.0% | |
| ! | GCTCCTCCTAGTGCTTTTCC+AGG | - | chr1_1:64669377-64669396 | Msa0036220:CDS | 55.0% |
| !! | GACCCTGGAAAAGCACTAGG+AGG | + | chr1_1:64669383-64669402 | None:intergenic | 55.0% |
| GATGGTATACCCATGGACCC+TGG | + | chr1_1:64669398-64669417 | None:intergenic | 55.0% | |
| !! | GCCGGATGATGGAGGTTGAT+TGG | + | chr1_1:64669435-64669454 | None:intergenic | 55.0% |
| ATGAGGCCAGGTGGAAACAG+TGG | + | chr1_1:64669482-64669501 | None:intergenic | 55.0% | |
| TTTCCACCTGGCCTCATTCC+TGG | - | chr1_1:64669485-64669504 | Msa0036220:CDS | 55.0% | |
| ATTCCAGGAATGAGGCCAGG+TGG | + | chr1_1:64669491-64669510 | None:intergenic | 55.0% | |
| ACCTGGCCTCATTCCTGGAA+TGG | - | chr1_1:64669490-64669509 | Msa0036220:CDS | 55.0% | |
| ACCATTCCAGGAATGAGGCC+AGG | + | chr1_1:64669494-64669513 | None:intergenic | 55.0% | |
| ! | GATGGTGGTACAGTTGACGG+TGG | + | chr1_1:64669587-64669606 | None:intergenic | 55.0% |
| ! | GGAAGTGTAGATCGCAAGCC+GGG | - | chr1_1:64669815-64669834 | Msa0036220:CDS | 55.0% |
| GAAGTGTAGATCGCAAGCCG+GGG | - | chr1_1:64669816-64669835 | Msa0036220:CDS | 55.0% | |
| ! | TCAAGTGGCTCGGGAAGGTT+AGG | - | chr1_1:64669839-64669858 | Msa0036220:CDS | 55.0% |
| GCTCGGGAAGGTTAGGACTT+GGG | - | chr1_1:64669846-64669865 | Msa0036220:CDS | 55.0% | |
| CTCGGGAAGGTTAGGACTTG+GGG | - | chr1_1:64669847-64669866 | Msa0036220:CDS | 55.0% | |
| GGTGGACCATGCATCGCAGA+AGG | + | chr1_1:64666719-64666738 | None:intergenic | 60.0% | |
| ! | CCGGGACCAGGGGGTATAAA+AGG | + | chr1_1:64666740-64666759 | None:intergenic | 60.0% |
| ! | GAGGTGCTTGATGCTGCTGC+TGG | + | chr1_1:64666856-64666875 | None:intergenic | 60.0% |
| !! | GGTGATGGAGCAAGATGGGG+AGG | + | chr1_1:64666899-64666918 | None:intergenic | 60.0% |
| TCAGAAGGAGGAGCGACTGG+GGG | + | chr1_1:64666941-64666960 | None:intergenic | 60.0% | |
| GGATCAGAAGGAGGAGCGAC+TGG | + | chr1_1:64666944-64666963 | None:intergenic | 60.0% | |
| ! | GGAGGCGGGACTAGCATTGA+AGG | + | chr1_1:64667262-64667281 | None:intergenic | 60.0% |
| GCCCCAGAAGTTTATCGGGG+CGG | + | chr1_1:64669322-64669341 | None:intergenic | 60.0% | |
| CAACCTCCATCATCCGGCAC+AGG | - | chr1_1:64669437-64669456 | Msa0036220:CDS | 60.0% | |
| TGTTCGCCTGTGCCGGATGA+TGG | + | chr1_1:64669446-64669465 | None:intergenic | 60.0% | |
| ATCTGCTGCAAGTGTGGGGG+TGG | + | chr1_1:64669767-64669786 | None:intergenic | 60.0% | |
| GGCTCGGGAAGGTTAGGACT+TGG | - | chr1_1:64669845-64669864 | Msa0036220:CDS | 60.0% | |
| GGCGACAGCCGATCCAAATG+AGG | - | chr1_1:64669868-64669887 | Msa0036220:CDS | 60.0% | |
| CACCGTCGCTCTAGCACTCA+TGG | + | chr1_1:64669957-64669976 | None:intergenic | 60.0% | |
| ! | ATGTGCAGCACCGGGACCAG+GGG | + | chr1_1:64666750-64666769 | None:intergenic | 65.0% |
| ! | GATGTGCAGCACCGGGACCA+GGG | + | chr1_1:64666751-64666770 | None:intergenic | 65.0% |
| GAGGTGGAGGAGGGCCTTGA+TGG | + | chr1_1:64666823-64666842 | None:intergenic | 65.0% | |
| ! | TCGCCTGTGCCGGATGATGG+AGG | + | chr1_1:64669443-64669462 | None:intergenic | 65.0% |
| TGCTGCAAGTGTGGGGGTGG+AGG | + | chr1_1:64669764-64669783 | None:intergenic | 65.0% | |
| TCGGCGTAGGTCCCTGTCTC+TGG | + | chr1_1:64669794-64669813 | None:intergenic | 65.0% | |
| GAGACAGGGACCTACGCCGA+TGG | - | chr1_1:64669794-64669813 | Msa0036220:CDS | 65.0% | |
| GATCGCAAGCCGGGGTCAAG+TGG | - | chr1_1:64669824-64669843 | Msa0036220:CDS | 65.0% | |
| CAAGCCGGGGTCAAGTGGCT+CGG | - | chr1_1:64669829-64669848 | Msa0036220:CDS | 65.0% | |
| AAGCCGGGGTCAAGTGGCTC+GGG | - | chr1_1:64669830-64669849 | Msa0036220:CDS | 65.0% | |
| CTTCCCGAGCCACTTGACCC+CGG | + | chr1_1:64669836-64669855 | None:intergenic | 65.0% | |
| ! | TGTGCAGCACCGGGACCAGG+GGG | + | chr1_1:64666749-64666768 | None:intergenic | 70.0% |
| ! | GGATGTGCAGCACCGGGACC+AGG | + | chr1_1:64666752-64666771 | None:intergenic | 70.0% |
| GAAGGAGGAGCGACTGGGGG+TGG | + | chr1_1:64666938-64666957 | None:intergenic | 70.0% | |
| ! | CGGGGTCAAGTGGCTCGGGA+AGG | - | chr1_1:64669834-64669853 | Msa0036220:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 64666522 | 64670240 | 64666522 | ID=Msa0036220;Name=Msa0036220 |
| chr1_1 | mRNA | 64666522 | 64670240 | 64666522 | ID=Msa0036220-mRNA-1;Parent=Msa0036220;Name=Msa0036220-mRNA-1;_AED=0.01;_eAED=0.01;_QI=71|1|1|1|1|1|3|258|679 |
| chr1_1 | exon | 64666522 | 64667525 | 64666522 | ID=Msa0036220-mRNA-1:exon:20718;Parent=Msa0036220-mRNA-1 |
| chr1_1 | exon | 64668167 | 64668444 | 64668167 | ID=Msa0036220-mRNA-1:exon:20717;Parent=Msa0036220-mRNA-1 |
| chr1_1 | exon | 64669154 | 64670240 | 64669154 | ID=Msa0036220-mRNA-1:exon:20716;Parent=Msa0036220-mRNA-1 |
| chr1_1 | five_prime_UTR | 64670170 | 64670240 | 64670170 | ID=Msa0036220-mRNA-1:five_prime_utr;Parent=Msa0036220-mRNA-1 |
| chr1_1 | CDS | 64669154 | 64670169 | 64669154 | ID=Msa0036220-mRNA-1:cds;Parent=Msa0036220-mRNA-1 |
| chr1_1 | CDS | 64668167 | 64668444 | 64668167 | ID=Msa0036220-mRNA-1:cds;Parent=Msa0036220-mRNA-1 |
| chr1_1 | CDS | 64666780 | 64667525 | 64666780 | ID=Msa0036220-mRNA-1:cds;Parent=Msa0036220-mRNA-1 |
| chr1_1 | three_prime_UTR | 64666522 | 64666779 | 64666522 | ID=Msa0036220-mRNA-1:three_prime_utr;Parent=Msa0036220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
