Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0038650 | XP_003592164.1 | 96.501 | 343 | 11 | 1 | 1 | 343 | 1 | 342 | 0.0 | 667 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0038650 | Msa0044780 | 0.809823 | 1.563791e-50 | -8.615850e-47 |
| Msa0038650 | Msa0065670 | 0.810948 | 8.941942e-51 | -8.615850e-47 |
| Msa0038650 | Msa0120100 | 0.805838 | 1.100031e-49 | -8.615850e-47 |
| Msa0038650 | Msa0120160 | 0.806885 | 6.619180e-50 | -8.615850e-47 |
| Msa0038650 | Msa0267450 | 0.802387 | 5.746311e-49 | -8.615850e-47 |
| Msa0038650 | Msa0267510 | 0.805589 | 1.241018e-49 | -8.615850e-47 |
| Msa0038650 | Msa0467170 | -0.824066 | 9.871375e-54 | -8.615850e-47 |
| Msa0038650 | Msa0467330 | -0.826259 | 2.992230e-54 | -8.615850e-47 |
| Msa0038650 | Msa0559650 | 0.806818 | 6.837805e-50 | -8.615850e-47 |
| Msa0038650 | Msa0579070 | 0.837944 | 3.853478e-57 | -8.615850e-47 |
| Msa0038650 | Msa0610700 | 0.825544 | 4.424667e-54 | -8.615850e-47 |
| Msa0038650 | Msa0654490 | 0.815270 | 1.007285e-51 | -8.615850e-47 |
| Msa0038650 | Msa0685060 | -0.809727 | 1.639780e-50 | -8.615850e-47 |
| Msa0038650 | Msa0707120 | 0.811083 | 8.360586e-51 | -8.615850e-47 |
| Msa0038650 | Msa0727860 | -0.803471 | 3.432214e-49 | -8.615850e-47 |
| Msa0038650 | Msa0734250 | -0.829960 | 3.843161e-55 | -8.615850e-47 |
| Msa0038650 | Msa0745140 | -0.810146 | 1.332785e-50 | -8.615850e-47 |
| Msa0038650 | Msa0753590 | 0.805177 | 1.513888e-49 | -8.615850e-47 |
| Msa0038650 | Msa0776640 | -0.810928 | 9.030635e-51 | -8.615850e-47 |
| Msa0038650 | Msa0813160 | -0.809258 | 2.068142e-50 | -8.615850e-47 |
| Msa0038650 | Msa0825920 | -0.806101 | 9.687433e-50 | -8.615850e-47 |
| Msa0038650 | Msa0840520 | -0.804293 | 2.315784e-49 | -8.615850e-47 |
| Msa0038650 | Msa0853200 | 0.822928 | 1.821962e-53 | -8.615850e-47 |
| Msa0038650 | Msa0882480 | 0.803561 | 3.286756e-49 | -8.615850e-47 |
| Msa0038650 | Msa0945030 | -0.823103 | 1.658788e-53 | -8.615850e-47 |
| Msa0038650 | Msa0964400 | 0.804827 | 1.791898e-49 | -8.615850e-47 |
| Msa0038650 | Msa1034850 | -0.824248 | 8.946895e-54 | -8.615850e-47 |
| Msa0038650 | Msa1074890 | -0.825739 | 3.977403e-54 | -8.615850e-47 |
| Msa0038650 | Msa1115740 | -0.809893 | 1.511035e-50 | -8.615850e-47 |
| Msa0038650 | Msa1156720 | -0.801308 | 9.574370e-49 | -8.615850e-47 |
| Msa0038650 | Msa1162240 | -0.825964 | 3.516257e-54 | -8.615850e-47 |
| Msa0038650 | Msa1266120 | 0.802353 | 5.839737e-49 | -8.615850e-47 |
| Msa0038650 | Msa1287100 | 0.807744 | 4.352503e-50 | -8.615850e-47 |
| Msa0038650 | Msa1436620 | -0.802778 | 4.774179e-49 | -8.615850e-47 |
| Msa0038650 | Msa1441610 | 0.948216 | 1.463746e-106 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0038650 | MtrunA17_Chr1g0202351 | 88.921 | 343 | 9 | 2 | 1 | 343 | 1 | 314 | 0.0 | 597 |
| Msa0038650 | MtrunA17_Chr8g0387651 | 61.371 | 321 | 111 | 4 | 31 | 343 | 29 | 344 | 8.88e-139 | 397 |
| Msa0038650 | MtrunA17_Chr8g0361751 | 28.033 | 239 | 160 | 4 | 110 | 339 | 85 | 320 | 3.43e-19 | 87.0 |
| Msa0038650 | MtrunA17_Chr4g0021461 | 34.021 | 97 | 64 | 0 | 239 | 335 | 189 | 285 | 8.34e-13 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0038650 | AT5G60750.1 | 58.876 | 338 | 124 | 7 | 15 | 343 | 16 | 347 | 1.22e-133 | 385 |
| Msa0038650 | AT1G14270.1 | 25.595 | 336 | 203 | 8 | 16 | 341 | 38 | 336 | 5.37e-21 | 92.8 |
| Msa0038650 | AT1G14270.2 | 28.194 | 227 | 149 | 5 | 123 | 339 | 6 | 228 | 1.28e-17 | 81.6 |
| Msa0038650 | AT1G14270.4 | 28.095 | 210 | 140 | 4 | 137 | 339 | 3 | 208 | 1.77e-17 | 80.9 |
| Msa0038650 | AT1G14270.3 | 28.095 | 210 | 140 | 4 | 137 | 339 | 3 | 208 | 1.77e-17 | 80.9 |
| Msa0038650 | AT2G20725.1 | 38.462 | 143 | 71 | 5 | 203 | 339 | 168 | 299 | 9.10e-15 | 74.3 |
Find 109 sgRNAs with CRISPR-Local
Find 307 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCATTGGGTCTGTGGATTT+TGG | 0.168634 | 1_1:+68178793 | Msa0038650:five_prime_UTR |
| ACAATTCTTCCTCTTCTTCT+AGG | 0.182767 | 1_1:+68178966 | Msa0038650:CDS |
| GAAGAACAGGCCACAAATTT+AGG | 0.188245 | 1_1:-68182607 | None:intergenic |
| CAAGATTCAGTCAAGTTTAA+AGG | 0.193284 | 1_1:+68179440 | Msa0038650:CDS |
| TCCTCTGGATTTGCTCGTTT+TGG | 0.260324 | 1_1:+68182318 | Msa0038650:CDS |
| ATGCTGCCACTTGTATTTCT+TGG | 0.277723 | 1_1:+68182854 | Msa0038650:CDS |
| TGCCGTCCAAGGAACTTTCC+AGG | 0.319791 | 1_1:-68181651 | None:intergenic |
| AACACAATCTCCTCCCATAT+CGG | 0.322150 | 1_1:-68182728 | None:intergenic |
| TTTCAGTTTGTGCCCCGATA+TGG | 0.340536 | 1_1:+68182714 | Msa0038650:CDS |
| CAATGTTGTTGCACAGTTTG+TGG | 0.375175 | 1_1:+68182924 | Msa0038650:CDS |
| TGGCAGTTTGATGTCGGTTT+GGG | 0.387411 | 1_1:+68182542 | Msa0038650:CDS |
| GTGGCAGTTTGATGTCGGTT+TGG | 0.390131 | 1_1:+68182541 | Msa0038650:CDS |
| GAGGAAGAATTGTGACGGAT+TGG | 0.393113 | 1_1:-68178956 | None:intergenic |
| GACGGCAAAGACCATTGTTC+AGG | 0.397126 | 1_1:+68181667 | Msa0038650:CDS |
| TTCAGTTTGTGCCCCGATAT+GGG | 0.398725 | 1_1:+68182715 | Msa0038650:CDS |
| TCTACACTCGAGACCGTAAC+TGG | 0.401617 | 1_1:-68182638 | None:intergenic |
| CAATTCTTCCTCTTCTTCTA+GGG | 0.404564 | 1_1:+68178967 | Msa0038650:CDS |
| GCATAGAGGGCCATTGCCAC+AGG | 0.414426 | 1_1:-68182683 | None:intergenic |
| TGACGGATTGGGAGAGAGAA+GGG | 0.417755 | 1_1:-68178944 | None:intergenic |
| ACACAATCTCCTCCCATATC+GGG | 0.418223 | 1_1:-68182727 | None:intergenic |
| AGGAAGAATTGTGACGGATT+GGG | 0.420903 | 1_1:-68178955 | None:intergenic |
| TTCTGCAGGTTATGCTCCTC+TGG | 0.428634 | 1_1:+68182303 | Msa0038650:intron |
| AAACTGTGCAACAACATTGA+TGG | 0.433078 | 1_1:-68182920 | None:intergenic |
| GGAAAGCGAGAAGAGGTAGT+TGG | 0.435020 | 1_1:-68179004 | None:intergenic |
| TGTATTTCTTGGCATGGTGA+TGG | 0.438892 | 1_1:+68182865 | Msa0038650:CDS |
| GTGGACATGGCTGTAGATAT+TGG | 0.442515 | 1_1:-68178899 | None:intergenic |
| CACCAAAACTAAAACCTTCA+CGG | 0.445721 | 1_1:-68178867 | None:intergenic |
| TGGGAGGAGATTGTGTTTCG+TGG | 0.447082 | 1_1:+68182734 | Msa0038650:CDS |
| TTCTGATGCGTACTACTGTA+AGG | 0.452621 | 1_1:+68178821 | Msa0038650:five_prime_UTR |
| CACAAATGAACCTAAATTTG+TGG | 0.454909 | 1_1:+68182597 | Msa0038650:CDS |
| GCCACTTGTATTTCTTGGCA+TGG | 0.459834 | 1_1:+68182859 | Msa0038650:CDS |
| ACTGGAGCATATTGAAGAAC+AGG | 0.460801 | 1_1:-68182620 | None:intergenic |
| TTGAACCCTGGAAAGTTCCT+TGG | 0.472723 | 1_1:+68181645 | Msa0038650:CDS |
| CTGAAACTACCACCGCATAG+AGG | 0.472948 | 1_1:-68182697 | None:intergenic |
| TGCTATCCCAACCATACCTT+CGG | 0.475440 | 1_1:-68182447 | None:intergenic |
| GGTTCAAATTTGAACTCAAA+GGG | 0.479194 | 1_1:+68182516 | Msa0038650:CDS |
| TCTTCAATATGCTCCAGTTA+CGG | 0.480251 | 1_1:+68182625 | Msa0038650:CDS |
| GTATTTCTTGGCATGGTGAT+GGG | 0.481543 | 1_1:+68182866 | Msa0038650:CDS |
| AAGTGAAACCCTAGAAGAAG+AGG | 0.492947 | 1_1:-68178975 | None:intergenic |
| GGCATGTACCTGGTTAAAGA+TGG | 0.496242 | 1_1:-68182767 | None:intergenic |
| TCAGAGTCATTACTTTCTGA+TGG | 0.496461 | 1_1:-68179395 | None:intergenic |
| TCCTTCTCCCATCTTTAACC+AGG | 0.506033 | 1_1:+68182759 | Msa0038650:CDS |
| AAGACGTCATCCTTAGCATT+GGG | 0.510600 | 1_1:+68178779 | Msa0038650:five_prime_UTR |
| GCCGTCCAAGGAACTTTCCA+GGG | 0.511591 | 1_1:-68181650 | None:intergenic |
| TAAGACGTCATCCTTAGCAT+TGG | 0.514625 | 1_1:+68178778 | Msa0038650:five_prime_UTR |
| CATCCTTAGCATTGGGTCTG+TGG | 0.516056 | 1_1:+68178786 | Msa0038650:five_prime_UTR |
| TAGTAGATAAGGTGAATGAT+TGG | 0.516213 | 1_1:-68179030 | None:intergenic |
| TGGTTCAAATTTGAACTCAA+AGG | 0.516255 | 1_1:+68182515 | Msa0038650:CDS |
| TACTTCATCGCTGTCTTGCA+AGG | 0.516888 | 1_1:+68182471 | Msa0038650:CDS |
| TTAAACCACTCTCGTCTGAC+TGG | 0.517108 | 1_1:+68182495 | Msa0038650:CDS |
| AGCACGAGACCCTGTGGCAA+TGG | 0.519544 | 1_1:+68182673 | Msa0038650:CDS |
| ATTGAATCCGTTGCTGAGGA+AGG | 0.519653 | 1_1:+68178720 | Msa0038650:five_prime_UTR |
| TCAAGAGACTGTACAATGCT+TGG | 0.524335 | 1_1:-68182415 | None:intergenic |
| GTTACGTACGTTAGTAGATA+AGG | 0.529226 | 1_1:-68179041 | None:intergenic |
| GTGACGGATTGGGAGAGAGA+AGG | 0.533622 | 1_1:-68178945 | None:intergenic |
| TGAAGAAGAAATTGTGGTGG+TGG | 0.537612 | 1_1:-68178918 | None:intergenic |
| GACAGATGTTGCCGAAGGTA+TGG | 0.538716 | 1_1:+68182436 | Msa0038650:CDS |
| GCAACAACATTGATGGTAAG+AGG | 0.539393 | 1_1:-68182913 | None:intergenic |
| TCTTACCCCTTCCTCAGCAA+CGG | 0.539816 | 1_1:-68178727 | None:intergenic |
| GTGCTGTATTTGTACGGTCT+AGG | 0.541725 | 1_1:+68182888 | Msa0038650:CDS |
| ATGTTGCCGAAGGTATGGTT+GGG | 0.545851 | 1_1:+68182441 | Msa0038650:CDS |
| TTGAATCCGTTGCTGAGGAA+GGG | 0.546362 | 1_1:+68178721 | Msa0038650:five_prime_UTR |
| AATTTGAACTCAAAGGGAAG+TGG | 0.548895 | 1_1:+68182522 | Msa0038650:CDS |
| GATGTTGCCGAAGGTATGGT+TGG | 0.549484 | 1_1:+68182440 | Msa0038650:CDS |
| ACAATGGTCTTTGCCGTCCA+AGG | 0.552030 | 1_1:-68181662 | None:intergenic |
| CACAGGGTCTCGTGCTACAA+TGG | 0.554021 | 1_1:-68182666 | None:intergenic |
| CCAGGGTTCAACACTGAGAA+CGG | 0.556868 | 1_1:-68181633 | None:intergenic |
| TGAATCCGTTGCTGAGGAAG+GGG | 0.558236 | 1_1:+68178722 | Msa0038650:five_prime_UTR |
| TTGGAGTGGAAAGCGAGAAG+AGG | 0.569871 | 1_1:-68179011 | None:intergenic |
| GGGAAGTGGCAGTTTGATGT+CGG | 0.575002 | 1_1:+68182536 | Msa0038650:CDS |
| GACGGATTGGGAGAGAGAAG+GGG | 0.578846 | 1_1:-68178943 | None:intergenic |
| TGAAACTACCACCGCATAGA+GGG | 0.578885 | 1_1:-68182696 | None:intergenic |
| AGAAATTGTGGTGGTGGACA+TGG | 0.580662 | 1_1:-68178912 | None:intergenic |
| ACTCCACACAGGCATGTACC+TGG | 0.581740 | 1_1:-68182777 | None:intergenic |
| GCATGTACCTGGTTAAAGAT+GGG | 0.588115 | 1_1:-68182766 | None:intergenic |
| ACCTGGTTAAAGATGGGAGA+AGG | 0.590179 | 1_1:-68182760 | None:intergenic |
| GGGTAAGAGAAATGATTGAA+AGG | 0.592248 | 1_1:+68178742 | Msa0038650:five_prime_UTR |
| CAATCAATCTCAGTCCGTGA+AGG | 0.596261 | 1_1:+68178853 | Msa0038650:five_prime_UTR |
| GGGGAGTGAAGAAGAAATTG+TGG | 0.598782 | 1_1:-68178924 | None:intergenic |
| TTGTGACAGATGATTGATGA+GGG | 0.604076 | 1_1:-68182579 | None:intergenic |
| CTGAATGTTAAAATGTGCGA+AGG | 0.606735 | 1_1:-68182828 | None:intergenic |
| CCGTTCTCAGTGTTGAACCC+TGG | 0.608460 | 1_1:+68181633 | Msa0038650:CDS |
| TTGAACCAGTCAGACGAGAG+TGG | 0.614440 | 1_1:-68182500 | None:intergenic |
| GAATATTGAATCCGTTGCTG+AGG | 0.614984 | 1_1:+68178716 | Msa0038650:five_prime_UTR |
| TGATGGGTGCTGTATTTGTA+CGG | 0.616024 | 1_1:+68182882 | Msa0038650:CDS |
| AATCCACAGACCCAATGCTA+AGG | 0.618458 | 1_1:-68178789 | None:intergenic |
| ACCCTGGAAAGTTCCTTGGA+CGG | 0.618545 | 1_1:+68181649 | Msa0038650:CDS |
| TTGGCTTACTGCTCTTTACA+CGG | 0.621284 | 1_1:+68179493 | Msa0038650:CDS |
| CATAGAGGGCCATTGCCACA+GGG | 0.622003 | 1_1:-68182682 | None:intergenic |
| CTCTTGACAGATGTTGCCGA+AGG | 0.624925 | 1_1:+68182431 | Msa0038650:CDS |
| TCTGATGCGTACTACTGTAA+GGG | 0.625138 | 1_1:+68178822 | Msa0038650:five_prime_UTR |
| TACAGTAGTACGCATCAGAA+CGG | 0.627529 | 1_1:-68178818 | None:intergenic |
| AAGAAGAGGAAGAATTGTGA+CGG | 0.629874 | 1_1:-68178961 | None:intergenic |
| GATAAGGTGAATGATTGGAG+TGG | 0.635242 | 1_1:-68179025 | None:intergenic |
| CACAATCTCCTCCCATATCG+GGG | 0.637448 | 1_1:-68182726 | None:intergenic |
| AAAGAAACACTTTCATACAG+AGG | 0.645850 | 1_1:+68182392 | Msa0038650:CDS |
| GTGACAGATGATTGATGAGG+GGG | 0.646113 | 1_1:-68182577 | None:intergenic |
| GATACACTTTACCTGAACAA+TGG | 0.646902 | 1_1:-68181678 | None:intergenic |
| ACTAATACTGCACTCCACAC+AGG | 0.658063 | 1_1:-68182788 | None:intergenic |
| AGTTTGTGCCCCGATATGGG+AGG | 0.660955 | 1_1:+68182718 | Msa0038650:CDS |
| ACCATGCCAAGAAATACAAG+TGG | 0.664668 | 1_1:-68182860 | None:intergenic |
| TTTGTGACAGATGATTGATG+AGG | 0.665764 | 1_1:-68182580 | None:intergenic |
| GGCAATGGCCCTCTATGCGG+TGG | 0.674602 | 1_1:+68182688 | Msa0038650:CDS |
| TGTGGCAATGGCCCTCTATG+CGG | 0.679210 | 1_1:+68182685 | Msa0038650:CDS |
| TAACCAGGTACATGCCTGTG+TGG | 0.679736 | 1_1:+68182774 | Msa0038650:CDS |
| ACCAAAACGAGCAAATCCAG+AGG | 0.683578 | 1_1:-68182319 | None:intergenic |
| CATTGTAGCACGAGACCCTG+TGG | 0.699488 | 1_1:+68182667 | Msa0038650:CDS |
| GAGTGAAGAAGAAATTGTGG+TGG | 0.705156 | 1_1:-68178921 | None:intergenic |
| TGTGACAGATGATTGATGAG+GGG | 0.717590 | 1_1:-68182578 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATAATTTTTTTTTTTTGCT+GGG | - | chr1_1:68179143-68179162 | None:intergenic | 10.0% |
| !!! | TTTTATTTATTATTTGGTTT+TGG | + | chr1_1:68179166-68179185 | Msa0038650:intron | 10.0% |
| !!! | CAATAATTTTTTTTTTTTGC+TGG | - | chr1_1:68179144-68179163 | None:intergenic | 15.0% |
| !! | TAGAATAATGAAAATGAATT+TGG | - | chr1_1:68181107-68181126 | None:intergenic | 15.0% |
| !! | TAGAAGAGTTAAATAAAAAT+GGG | + | chr1_1:68181263-68181282 | Msa0038650:intron | 15.0% |
| !!! | TTTTTGTTTTTAAATTCAAG+TGG | + | chr1_1:68182125-68182144 | Msa0038650:intron | 15.0% |
| !! | TGTTTAGAGATTTAATTGAA+TGG | + | chr1_1:68179202-68179221 | Msa0038650:intron | 20.0% |
| !!! | TTTTTGATTTGAACTAATCT+TGG | + | chr1_1:68179314-68179333 | Msa0038650:intron | 20.0% |
| !! | TTCATGGATATTATAATAGT+TGG | + | chr1_1:68179545-68179564 | Msa0038650:intron | 20.0% |
| !!! | AATAGTTGGTATAATAAACT+AGG | + | chr1_1:68179559-68179578 | Msa0038650:intron | 20.0% |
| !! | CAATTCTTAAGATTGTATTA+TGG | - | chr1_1:68180070-68180089 | None:intergenic | 20.0% |
| !!! | AATCTTCCAAATATTTTCAT+CGG | - | chr1_1:68180133-68180152 | None:intergenic | 20.0% |
| !!! | ATATTTTCTTTGACATATTG+TGG | + | chr1_1:68180176-68180195 | Msa0038650:intron | 20.0% |
| !! | ACATTACAAGATGTATAAAA+TGG | - | chr1_1:68180362-68180381 | None:intergenic | 20.0% |
| !!! | AGTTAAACTAAGTTTTTGTT+AGG | + | chr1_1:68180518-68180537 | Msa0038650:intron | 20.0% |
| !!! | TAAGTTTTTGTTAGGATATA+GGG | + | chr1_1:68180526-68180545 | Msa0038650:intron | 20.0% |
| !! | AATCTGAAAATTGAAAATAC+AGG | - | chr1_1:68180791-68180810 | None:intergenic | 20.0% |
| !!! | TTTTCAACTGTATAGATAAT+TGG | + | chr1_1:68181057-68181076 | Msa0038650:intron | 20.0% |
| !! | CTAGAAGAGTTAAATAAAAA+TGG | + | chr1_1:68181262-68181281 | Msa0038650:intron | 20.0% |
| !! | AGAAGAGTTAAATAAAAATG+GGG | + | chr1_1:68181264-68181283 | Msa0038650:intron | 20.0% |
| !!! | GATAAACTCTAGAATTTATA+TGG | + | chr1_1:68181324-68181343 | Msa0038650:intron | 20.0% |
| !! | TATAATAAAACCAAATCTCA+AGG | + | chr1_1:68181365-68181384 | Msa0038650:intron | 20.0% |
| !!! | GCAATTTTTATTATTGAAAC+TGG | - | chr1_1:68182000-68182019 | None:intergenic | 20.0% |
| !!! | TTTTAATAGTTGATTTGACA+AGG | + | chr1_1:68182182-68182201 | Msa0038650:intron | 20.0% |
| !!! | TTTAATAGTTGATTTGACAA+GGG | + | chr1_1:68182183-68182202 | Msa0038650:intron | 20.0% |
| !! | AAAAAATATATGTTTGTGCA+TGG | - | chr1_1:68182243-68182262 | None:intergenic | 20.0% |
| ! | AAAAGCAAACTTGAAGAAAT+GGG | - | chr1_1:68179108-68179127 | None:intergenic | 25.0% |
| ! | AAAAAGCAAACTTGAAGAAA+TGG | - | chr1_1:68179109-68179128 | None:intergenic | 25.0% |
| ! | TTAGAGATTTAATTGAATGG+TGG | + | chr1_1:68179205-68179224 | Msa0038650:intron | 25.0% |
| ! | TAGAGATTTAATTGAATGGT+GGG | + | chr1_1:68179206-68179225 | Msa0038650:intron | 25.0% |
| !!! | TCTTTTTTCTTCAAGTCTTT+CGG | - | chr1_1:68179473-68179492 | None:intergenic | 25.0% |
| ! | AAGACTTGAAGAAAAAAGAT+TGG | + | chr1_1:68179474-68179493 | Msa0038650:CDS | 25.0% |
| !!! | TATATGGCTTTTGCTTTAAA+GGG | + | chr1_1:68179609-68179628 | Msa0038650:intron | 25.0% |
| ! | TTACTATGACATGATTTAGT+GGG | + | chr1_1:68179655-68179674 | Msa0038650:intron | 25.0% |
| !!! | GTAATTACTTTTGTGATCAT+TGG | + | chr1_1:68179687-68179706 | Msa0038650:intron | 25.0% |
| !! | CTAAGTTTTTGTTAGGATAT+AGG | + | chr1_1:68180525-68180544 | Msa0038650:intron | 25.0% |
| ! | TAACATGATTTCATAGAAAG+AGG | - | chr1_1:68180985-68181004 | None:intergenic | 25.0% |
| ! | AACTGTATAGATAATTGGTA+TGG | + | chr1_1:68181062-68181081 | Msa0038650:intron | 25.0% |
| !!! | TTCATTATTCTAGTTTCAAC+TGG | + | chr1_1:68181115-68181134 | Msa0038650:intron | 25.0% |
| ! | CAAAGTTTGTAGTTTAACAA+TGG | + | chr1_1:68181546-68181565 | Msa0038650:intron | 25.0% |
| ! | ATTTATATGAAACATAGGAG+TGG | - | chr1_1:68181807-68181826 | None:intergenic | 25.0% |
| ! | TGGACATTTATATGAAACAT+AGG | - | chr1_1:68181812-68181831 | None:intergenic | 25.0% |
| ! | GAAAAGTTGTATAATCATCT+CGG | - | chr1_1:68181884-68181903 | None:intergenic | 25.0% |
| ! | GATTTACCAGAAAGAAAATA+GGG | - | chr1_1:68181906-68181925 | None:intergenic | 25.0% |
| ! | CTTAGACAAATAATGATTTG+TGG | + | chr1_1:68181953-68181972 | Msa0038650:intron | 25.0% |
| ! | TTTAATGAAATCACGATGTT+AGG | + | chr1_1:68182263-68182282 | Msa0038650:intron | 25.0% |
| TAGTAGATAAGGTGAATGAT+TGG | - | chr1_1:68179033-68179052 | None:intergenic | 30.0% | |
| ATGTGTAAGAAAAGGAGAAA+GGG | - | chr1_1:68179076-68179095 | None:intergenic | 30.0% | |
| TATGTGTAAGAAAAGGAGAA+AGG | - | chr1_1:68179077-68179096 | None:intergenic | 30.0% | |
| TGGCAAATATGTGTAAGAAA+AGG | - | chr1_1:68179084-68179103 | None:intergenic | 30.0% | |
| !!! | TCGTTTTTTCATTCCAGAAA+TGG | + | chr1_1:68179342-68179361 | Msa0038650:intron | 30.0% |
| CAAGATTCAGTCAAGTTTAA+AGG | + | chr1_1:68179440-68179459 | Msa0038650:CDS | 30.0% | |
| ATGTATACTCTCATGTTTCA+TGG | + | chr1_1:68179529-68179548 | Msa0038650:intron | 30.0% | |
| TTGCTATGTCTCTTAGTATA+TGG | + | chr1_1:68179593-68179612 | Msa0038650:intron | 30.0% | |
| ! | GTATATGGCTTTTGCTTTAA+AGG | + | chr1_1:68179608-68179627 | Msa0038650:intron | 30.0% |
| !!! | ATATGGCTTTTGCTTTAAAG+GGG | + | chr1_1:68179610-68179629 | Msa0038650:intron | 30.0% |
| GTTACTATGACATGATTTAG+TGG | + | chr1_1:68179654-68179673 | Msa0038650:intron | 30.0% | |
| !! | TTACTTTTGTGATCATTGGT+TGG | + | chr1_1:68179691-68179710 | Msa0038650:intron | 30.0% |
| ATTGGGTGCTTATTCAATAT+CGG | + | chr1_1:68179718-68179737 | Msa0038650:intron | 30.0% | |
| AATGAGTGATGTGTAAATGT+AGG | + | chr1_1:68179757-68179776 | Msa0038650:intron | 30.0% | |
| GTCATTGCTTATACAAACTT+TGG | - | chr1_1:68180010-68180029 | None:intergenic | 30.0% | |
| ATGTGTCCGATGAAAATATT+TGG | + | chr1_1:68180124-68180143 | Msa0038650:intron | 30.0% | |
| !!! | AAGCATTTTTTCCATCAGAA+TGG | - | chr1_1:68180224-68180243 | None:intergenic | 30.0% |
| TTATTGCAATATGTGTAGCA+AGG | + | chr1_1:68180250-68180269 | Msa0038650:intron | 30.0% | |
| AGATGTATAAAATGGTGATC+CGG | - | chr1_1:68180354-68180373 | None:intergenic | 30.0% | |
| ATCCATTGCTAATATGGAAA+GGG | - | chr1_1:68180465-68180484 | None:intergenic | 30.0% | |
| AATCCATTGCTAATATGGAA+AGG | - | chr1_1:68180466-68180485 | None:intergenic | 30.0% | |
| TTTCCATATTAGCAATGGAT+TGG | + | chr1_1:68180465-68180484 | Msa0038650:intron | 30.0% | |
| !!! | CTTTCCTAATTTTAAAGCCA+CGG | + | chr1_1:68180491-68180510 | Msa0038650:intron | 30.0% |
| !! | TTAACCGTGGCTTTAAAATT+AGG | - | chr1_1:68180498-68180517 | None:intergenic | 30.0% |
| ! | ACTTAGTTTAACTTTAACCG+TGG | - | chr1_1:68180511-68180530 | None:intergenic | 30.0% |
| AGTTAAGTAGTTAAACTCAG+AGG | + | chr1_1:68180551-68180570 | Msa0038650:intron | 30.0% | |
| GTTAAGTAGTTAAACTCAGA+GGG | + | chr1_1:68180552-68180571 | Msa0038650:intron | 30.0% | |
| AATCAAATTTGTCAGTCTAG+AGG | + | chr1_1:68180690-68180709 | Msa0038650:intron | 30.0% | |
| ! | ATTTTCAGATTGAAACCTTC+AGG | + | chr1_1:68180800-68180819 | Msa0038650:intron | 30.0% |
| ATTGAAACCTTCAGGATAAT+AGG | + | chr1_1:68180808-68180827 | Msa0038650:intron | 30.0% | |
| TTGAAACCTTCAGGATAATA+GGG | + | chr1_1:68180809-68180828 | Msa0038650:intron | 30.0% | |
| AGGGAATGCTTTGTATAAAT+AGG | + | chr1_1:68180848-68180867 | Msa0038650:intron | 30.0% | |
| TTCATAGAAAGAGGAAGAAT+AGG | - | chr1_1:68180976-68180995 | None:intergenic | 30.0% | |
| TCAATTTCCAATTCTTTGTC+TGG | + | chr1_1:68181023-68181042 | Msa0038650:intron | 30.0% | |
| CAATTTCCAATTCTTTGTCT+GGG | + | chr1_1:68181024-68181043 | Msa0038650:intron | 30.0% | |
| ATATTTAGGTCCTTGAGATT+TGG | - | chr1_1:68181378-68181397 | None:intergenic | 30.0% | |
| AATCTCAAGGACCTAAATAT+TGG | + | chr1_1:68181378-68181397 | Msa0038650:intron | 30.0% | |
| ! | GAAACATATTTAGAGTGTGT+CGG | + | chr1_1:68181568-68181587 | Msa0038650:intron | 30.0% |
| ! | AAACATATTTAGAGTGTGTC+GGG | + | chr1_1:68181569-68181588 | Msa0038650:intron | 30.0% |
| TGAGAACGGTATTTATAATC+TGG | - | chr1_1:68181622-68181641 | None:intergenic | 30.0% | |
| GATATGCAAAGTGATAAGAA+AGG | - | chr1_1:68181703-68181722 | None:intergenic | 30.0% | |
| ATCTATGCTTCAAGTATGTT+CGG | + | chr1_1:68181735-68181754 | Msa0038650:intron | 30.0% | |
| ! | ACTTTTCCCTATTTTCTTTC+TGG | + | chr1_1:68181897-68181916 | Msa0038650:intron | 30.0% |
| CGATTTACCAGAAAGAAAAT+AGG | - | chr1_1:68181907-68181926 | None:intergenic | 30.0% | |
| AAAGAAACACTTTCATACAG+AGG | + | chr1_1:68182392-68182411 | Msa0038650:CDS | 30.0% | |
| TGGTTCAAATTTGAACTCAA+AGG | + | chr1_1:68182515-68182534 | Msa0038650:CDS | 30.0% | |
| GGTTCAAATTTGAACTCAAA+GGG | + | chr1_1:68182516-68182535 | Msa0038650:CDS | 30.0% | |
| CACAAATGAACCTAAATTTG+TGG | + | chr1_1:68182597-68182616 | Msa0038650:CDS | 30.0% | |
| GGGTAAGAGAAATGATTGAA+AGG | + | chr1_1:68178742-68178761 | Msa0038650:five_prime_UTR | 35.0% | |
| CACCAAAACTAAAACCTTCA+CGG | - | chr1_1:68178870-68178889 | None:intergenic | 35.0% | |
| AAGAAGAGGAAGAATTGTGA+CGG | - | chr1_1:68178964-68178983 | None:intergenic | 35.0% | |
| ACAATTCTTCCTCTTCTTCT+AGG | + | chr1_1:68178966-68178985 | Msa0038650:CDS | 35.0% | |
| CAATTCTTCCTCTTCTTCTA+GGG | + | chr1_1:68178967-68178986 | Msa0038650:CDS | 35.0% | |
| GTTACGTACGTTAGTAGATA+AGG | - | chr1_1:68179044-68179063 | None:intergenic | 35.0% | |
| ! | GTCAGTTGTTACTTGTTAGT+TGG | + | chr1_1:68179242-68179261 | Msa0038650:intron | 35.0% |
| AACACAAAACTCTCCATTTC+TGG | - | chr1_1:68179358-68179377 | None:intergenic | 35.0% | |
| TCAGAGTCATTACTTTCTGA+TGG | - | chr1_1:68179398-68179417 | None:intergenic | 35.0% | |
| TAACTCTAACCACTATGACA+AGG | - | chr1_1:68179638-68179657 | None:intergenic | 35.0% | |
| !! | ATCTCTAAGAGCATCCAAAA+TGG | - | chr1_1:68179812-68179831 | None:intergenic | 35.0% |
| ATACAAACTTTGGCACAACA+GGG | - | chr1_1:68180000-68180019 | None:intergenic | 35.0% | |
| TATACAAACTTTGGCACAAC+AGG | - | chr1_1:68180001-68180020 | None:intergenic | 35.0% | |
| TTGTATAAGCAATGACTGAG+TGG | + | chr1_1:68180014-68180033 | Msa0038650:intron | 35.0% | |
| TGTATAAGCAATGACTGAGT+GGG | + | chr1_1:68180015-68180034 | Msa0038650:intron | 35.0% | |
| TCAGAATGTCAAATAGCTCA+TGG | - | chr1_1:68180156-68180175 | None:intergenic | 35.0% | |
| GTTATCTTAGTCCATTCTGA+TGG | + | chr1_1:68180210-68180229 | Msa0038650:intron | 35.0% | |
| AATGGCATGTCAAATTTGTC+TGG | - | chr1_1:68180386-68180405 | None:intergenic | 35.0% | |
| ! | TGCCATTCTGATTTTATTCC+AGG | + | chr1_1:68180399-68180418 | Msa0038650:intron | 35.0% |
| ! | GCCATTCTGATTTTATTCCA+GGG | + | chr1_1:68180400-68180419 | Msa0038650:intron | 35.0% |
| TCCCTGGAATAAAATCAGAA+TGG | - | chr1_1:68180404-68180423 | None:intergenic | 35.0% | |
| TCCATTGCTAATATGGAAAG+GGG | - | chr1_1:68180464-68180483 | None:intergenic | 35.0% | |
| GAACCAATCCATTGCTAATA+TGG | - | chr1_1:68180471-68180490 | None:intergenic | 35.0% | |
| !! | CGTGGCTTTAAAATTAGGAA+AGG | - | chr1_1:68180493-68180512 | None:intergenic | 35.0% |
| AGACATTGAGTAAATTGAGC+AGG | + | chr1_1:68180628-68180647 | Msa0038650:intron | 35.0% | |
| GACATTGAGTAAATTGAGCA+GGG | + | chr1_1:68180629-68180648 | Msa0038650:intron | 35.0% | |
| ACATTGAGTAAATTGAGCAG+GGG | + | chr1_1:68180630-68180649 | Msa0038650:intron | 35.0% | |
| GGGCATATTATTGCAAATCA+AGG | + | chr1_1:68180666-68180685 | Msa0038650:intron | 35.0% | |
| ACCTTTACTACTTTCAGACA+CGG | + | chr1_1:68180754-68180773 | Msa0038650:intron | 35.0% | |
| TGAAACCTTCAGGATAATAG+GGG | + | chr1_1:68180810-68180829 | Msa0038650:intron | 35.0% | |
| TAGGAGAAATTTGAGTAGAG+AGG | + | chr1_1:68180867-68180886 | Msa0038650:intron | 35.0% | |
| AGTGACTCTATTGTAGAAGA+GGG | + | chr1_1:68180927-68180946 | Msa0038650:intron | 35.0% | |
| TAGATACCCAGACAAAGAAT+TGG | - | chr1_1:68181033-68181052 | None:intergenic | 35.0% | |
| TCTTCTTTGTTCATTCTCAC+AGG | - | chr1_1:68181178-68181197 | None:intergenic | 35.0% | |
| GATACACTTTACCTGAACAA+TGG | - | chr1_1:68181681-68181700 | None:intergenic | 35.0% | |
| CATAGGAGTGGACATTTATA+CGG | - | chr1_1:68181795-68181814 | None:intergenic | 35.0% | |
| ACATTTATCCCAACAGAAAC+AGG | - | chr1_1:68181847-68181866 | None:intergenic | 35.0% | |
| ! | TGTTTCTGTTGGGATAAATG+TGG | + | chr1_1:68181846-68181865 | Msa0038650:intron | 35.0% |
| TATAATCATCTCGGTTGTCA+AGG | - | chr1_1:68181875-68181894 | None:intergenic | 35.0% | |
| TATATGTTTGTGCATGGAAC+AGG | - | chr1_1:68182237-68182256 | None:intergenic | 35.0% | |
| TGTTAGGAAGCAAACTAAGT+CGG | + | chr1_1:68182279-68182298 | Msa0038650:intron | 35.0% | |
| AATTTGAACTCAAAGGGAAG+TGG | + | chr1_1:68182522-68182541 | Msa0038650:CDS | 35.0% | |
| TTGTGACAGATGATTGATGA+GGG | - | chr1_1:68182582-68182601 | None:intergenic | 35.0% | |
| TTTGTGACAGATGATTGATG+AGG | - | chr1_1:68182583-68182602 | None:intergenic | 35.0% | |
| TCTTCAATATGCTCCAGTTA+CGG | + | chr1_1:68182625-68182644 | Msa0038650:CDS | 35.0% | |
| CTGAATGTTAAAATGTGCGA+AGG | - | chr1_1:68182831-68182850 | None:intergenic | 35.0% | |
| !! | TCGCACATTTTAACATTCAG+AGG | + | chr1_1:68182831-68182850 | Msa0038650:CDS | 35.0% |
| AAACTGTGCAACAACATTGA+TGG | - | chr1_1:68182923-68182942 | None:intergenic | 35.0% | |
| ! | GTGGAATGCTTTTGTATTTC+TGG | + | chr1_1:68182943-68182962 | Msa0038650:CDS | 35.0% |
| GAATATTGAATCCGTTGCTG+AGG | + | chr1_1:68178716-68178735 | Msa0038650:five_prime_UTR | 40.0% | |
| TAAGACGTCATCCTTAGCAT+TGG | + | chr1_1:68178778-68178797 | Msa0038650:five_prime_UTR | 40.0% | |
| AAGACGTCATCCTTAGCATT+GGG | + | chr1_1:68178779-68178798 | Msa0038650:five_prime_UTR | 40.0% | |
| TACAGTAGTACGCATCAGAA+CGG | - | chr1_1:68178821-68178840 | None:intergenic | 40.0% | |
| TTCTGATGCGTACTACTGTA+AGG | + | chr1_1:68178821-68178840 | Msa0038650:five_prime_UTR | 40.0% | |
| TCTGATGCGTACTACTGTAA+GGG | + | chr1_1:68178822-68178841 | Msa0038650:five_prime_UTR | 40.0% | |
| !!! | GTCCGTGAAGGTTTTAGTTT+TGG | + | chr1_1:68178865-68178884 | Msa0038650:five_prime_UTR | 40.0% |
| TGAAGAAGAAATTGTGGTGG+TGG | - | chr1_1:68178921-68178940 | None:intergenic | 40.0% | |
| GAGTGAAGAAGAAATTGTGG+TGG | - | chr1_1:68178924-68178943 | None:intergenic | 40.0% | |
| !! | AGGAAGAATTGTGACGGATT+GGG | - | chr1_1:68178958-68178977 | None:intergenic | 40.0% |
| AAGTGAAACCCTAGAAGAAG+AGG | - | chr1_1:68178978-68178997 | None:intergenic | 40.0% | |
| GATAAGGTGAATGATTGGAG+TGG | - | chr1_1:68179028-68179047 | None:intergenic | 40.0% | |
| ! | AATGGTGGGATTGATATGTG+AGG | + | chr1_1:68179220-68179239 | Msa0038650:intron | 40.0% |
| TTGGCTTACTGCTCTTTACA+CGG | + | chr1_1:68179493-68179512 | Msa0038650:CDS | 40.0% | |
| !! | CTTTTGTGATCATTGGTTGG+AGG | + | chr1_1:68179694-68179713 | Msa0038650:intron | 40.0% |
| ! | TGATCATTGGTTGGAGGAAT+TGG | + | chr1_1:68179700-68179719 | Msa0038650:intron | 40.0% |
| ! | GATCATTGGTTGGAGGAATT+GGG | + | chr1_1:68179701-68179720 | Msa0038650:intron | 40.0% |
| AAAATGGAGCTCCCTTATTC+GGG | - | chr1_1:68179796-68179815 | None:intergenic | 40.0% | |
| CAAAATGGAGCTCCCTTATT+CGG | - | chr1_1:68179797-68179816 | None:intergenic | 40.0% | |
| AGGAAAGGAACAGACTCAAA+GGG | - | chr1_1:68179898-68179917 | None:intergenic | 40.0% | |
| TAGGAAAGGAACAGACTCAA+AGG | - | chr1_1:68179899-68179918 | None:intergenic | 40.0% | |
| GTATAAGCAATGACTGAGTG+GGG | + | chr1_1:68180016-68180035 | Msa0038650:intron | 40.0% | |
| TCCCCTTTCCATATTAGCAA+TGG | + | chr1_1:68180460-68180479 | Msa0038650:intron | 40.0% | |
| AAATTTGTCAGTCTAGAGGC+TGG | + | chr1_1:68180694-68180713 | Msa0038650:intron | 40.0% | |
| TCCGTGTCTGAAAGTAGTAA+AGG | - | chr1_1:68180758-68180777 | None:intergenic | 40.0% | |
| CTCTTCTACAATAGAGTCAC+TGG | - | chr1_1:68180928-68180947 | None:intergenic | 40.0% | |
| CAGTGACTCTATTGTAGAAG+AGG | + | chr1_1:68180926-68180945 | Msa0038650:intron | 40.0% | |
| ATTGTAGAAGAGGGAACTCT+TGG | + | chr1_1:68180936-68180955 | Msa0038650:intron | 40.0% | |
| GTGTGGACACACCAATATTT+AGG | - | chr1_1:68181392-68181411 | None:intergenic | 40.0% | |
| !! | GCAGATTGCTGTTTGATAGT+TGG | - | chr1_1:68181503-68181522 | None:intergenic | 40.0% |
| TGGACATTTATACGGTGAAG+GGG | - | chr1_1:68181787-68181806 | None:intergenic | 40.0% | |
| GTGGACATTTATACGGTGAA+GGG | - | chr1_1:68181788-68181807 | None:intergenic | 40.0% | |
| AGTGGACATTTATACGGTGA+AGG | - | chr1_1:68181789-68181808 | None:intergenic | 40.0% | |
| GTTAGGAAGCAAACTAAGTC+GGG | + | chr1_1:68182280-68182299 | Msa0038650:intron | 40.0% | |
| !!! | ATTTGCTCGTTTTGGTTGGT+AGG | + | chr1_1:68182326-68182345 | Msa0038650:CDS | 40.0% |
| CCTGCTGTGTAAGCTAAAAA+CGG | - | chr1_1:68182365-68182384 | None:intergenic | 40.0% | |
| !!! | CGTTTTTAGCTTACACAGCA+GGG | + | chr1_1:68182363-68182382 | Msa0038650:CDS | 40.0% |
| TCAAGAGACTGTACAATGCT+TGG | - | chr1_1:68182418-68182437 | None:intergenic | 40.0% | |
| TGTGACAGATGATTGATGAG+GGG | - | chr1_1:68182581-68182600 | None:intergenic | 40.0% | |
| GAAGAACAGGCCACAAATTT+AGG | - | chr1_1:68182610-68182629 | None:intergenic | 40.0% | |
| ACTGGAGCATATTGAAGAAC+AGG | - | chr1_1:68182623-68182642 | None:intergenic | 40.0% | |
| AACACAATCTCCTCCCATAT+CGG | - | chr1_1:68182731-68182750 | None:intergenic | 40.0% | |
| GCATGTACCTGGTTAAAGAT+GGG | - | chr1_1:68182769-68182788 | None:intergenic | 40.0% | |
| ! | ATGCTGCCACTTGTATTTCT+TGG | + | chr1_1:68182854-68182873 | Msa0038650:CDS | 40.0% |
| ACCATGCCAAGAAATACAAG+TGG | - | chr1_1:68182863-68182882 | None:intergenic | 40.0% | |
| TGTATTTCTTGGCATGGTGA+TGG | + | chr1_1:68182865-68182884 | Msa0038650:CDS | 40.0% | |
| GTATTTCTTGGCATGGTGAT+GGG | + | chr1_1:68182866-68182885 | Msa0038650:CDS | 40.0% | |
| ! | TGATGGGTGCTGTATTTGTA+CGG | + | chr1_1:68182882-68182901 | Msa0038650:CDS | 40.0% |
| ! | GCAACAACATTGATGGTAAG+AGG | - | chr1_1:68182916-68182935 | None:intergenic | 40.0% |
| CAATGTTGTTGCACAGTTTG+TGG | + | chr1_1:68182924-68182943 | Msa0038650:CDS | 40.0% | |
| ATTGAATCCGTTGCTGAGGA+AGG | + | chr1_1:68178720-68178739 | Msa0038650:five_prime_UTR | 45.0% | |
| TTGAATCCGTTGCTGAGGAA+GGG | + | chr1_1:68178721-68178740 | Msa0038650:five_prime_UTR | 45.0% | |
| AATCCACAGACCCAATGCTA+AGG | - | chr1_1:68178792-68178811 | None:intergenic | 45.0% | |
| !! | AGCATTGGGTCTGTGGATTT+TGG | + | chr1_1:68178793-68178812 | Msa0038650:five_prime_UTR | 45.0% |
| CAATCAATCTCAGTCCGTGA+AGG | + | chr1_1:68178853-68178872 | Msa0038650:five_prime_UTR | 45.0% | |
| GTGGACATGGCTGTAGATAT+TGG | - | chr1_1:68178902-68178921 | None:intergenic | 45.0% | |
| !! | AGAAATTGTGGTGGTGGACA+TGG | - | chr1_1:68178915-68178934 | None:intergenic | 45.0% |
| GGGGAGTGAAGAAGAAATTG+TGG | - | chr1_1:68178927-68178946 | None:intergenic | 45.0% | |
| !! | GAGGAAGAATTGTGACGGAT+TGG | - | chr1_1:68178959-68178978 | None:intergenic | 45.0% |
| AAAGGAGAAAGGGAGAGAGT+GGG | - | chr1_1:68179066-68179085 | None:intergenic | 45.0% | |
| AAAAGGAGAAAGGGAGAGAG+TGG | - | chr1_1:68179067-68179086 | None:intergenic | 45.0% | |
| GCAAACTTGAAGAAATGGGC+TGG | - | chr1_1:68179104-68179123 | None:intergenic | 45.0% | |
| CCTTATTCGGGTGCATAAGT+GGG | - | chr1_1:68179784-68179803 | None:intergenic | 45.0% | |
| CCACTTATGCACCCGAATAA+GGG | + | chr1_1:68179782-68179801 | Msa0038650:intron | 45.0% | |
| ! | CGAATAAGGGAGCTCCATTT+TGG | + | chr1_1:68179795-68179814 | Msa0038650:intron | 45.0% |
| GCAATGGAAGAGTCTAGGAA+AGG | - | chr1_1:68179913-68179932 | None:intergenic | 45.0% | |
| TTCCTAGACTCTTCCATTGC+AGG | + | chr1_1:68179913-68179932 | Msa0038650:intron | 45.0% | |
| ! | CTGATCTAGAACTCCTGCAA+TGG | - | chr1_1:68179929-68179948 | None:intergenic | 45.0% |
| GTGTAGCAAGGATGTAATCG+TGG | + | chr1_1:68180262-68180281 | Msa0038650:intron | 45.0% | |
| GAAGAACCTGTAGTTGCGTT+CGG | + | chr1_1:68180431-68180450 | Msa0038650:intron | 45.0% | |
| AAGAACCTGTAGTTGCGTTC+GGG | + | chr1_1:68180432-68180451 | Msa0038650:intron | 45.0% | |
| TAGAAGAGGGAACTCTTGGA+GGG | + | chr1_1:68180940-68180959 | Msa0038650:intron | 45.0% | |
| TTGAACCCTGGAAAGTTCCT+TGG | + | chr1_1:68181645-68181664 | Msa0038650:CDS | 45.0% | |
| ATGTTCGGTACTTCCGATTG+TGG | + | chr1_1:68181750-68181769 | Msa0038650:intron | 45.0% | |
| GGTAGGAAGGAATCCACAAT+CGG | - | chr1_1:68181766-68181785 | None:intergenic | 45.0% | |
| CATTTATACGGTGAAGGGGT+AGG | - | chr1_1:68181783-68181802 | None:intergenic | 45.0% | |
| GAAACAGGAAGAGGCAAGAA+TGG | - | chr1_1:68181832-68181851 | None:intergenic | 45.0% | |
| !! | TTGCCTCTTCCTGTTTCTGT+TGG | + | chr1_1:68181835-68181854 | Msa0038650:intron | 45.0% |
| !! | TGCCTCTTCCTGTTTCTGTT+GGG | + | chr1_1:68181836-68181855 | Msa0038650:intron | 45.0% |
| ATCCCAACAGAAACAGGAAG+AGG | - | chr1_1:68181841-68181860 | None:intergenic | 45.0% | |
| !! | TCCTCTGGATTTGCTCGTTT+TGG | + | chr1_1:68182318-68182337 | Msa0038650:CDS | 45.0% |
| ACCAAAACGAGCAAATCCAG+AGG | - | chr1_1:68182322-68182341 | None:intergenic | 45.0% | |
| !! | CTGGATTTGCTCGTTTTGGT+TGG | + | chr1_1:68182322-68182341 | Msa0038650:CDS | 45.0% |
| !!! | CGTTTTGGTTGGTAGGTTCT+TGG | + | chr1_1:68182333-68182352 | Msa0038650:CDS | 45.0% |
| !!! | CCGTTTTTAGCTTACACAGC+AGG | + | chr1_1:68182362-68182381 | Msa0038650:CDS | 45.0% |
| ! | ATGTTGCCGAAGGTATGGTT+GGG | + | chr1_1:68182441-68182460 | Msa0038650:CDS | 45.0% |
| TGCTATCCCAACCATACCTT+CGG | - | chr1_1:68182450-68182469 | None:intergenic | 45.0% | |
| TACTTCATCGCTGTCTTGCA+AGG | + | chr1_1:68182471-68182490 | Msa0038650:CDS | 45.0% | |
| TTAAACCACTCTCGTCTGAC+TGG | + | chr1_1:68182495-68182514 | Msa0038650:CDS | 45.0% | |
| !! | TGGCAGTTTGATGTCGGTTT+GGG | + | chr1_1:68182542-68182561 | Msa0038650:CDS | 45.0% |
| GTGACAGATGATTGATGAGG+GGG | - | chr1_1:68182580-68182599 | None:intergenic | 45.0% | |
| TGAAACTACCACCGCATAGA+GGG | - | chr1_1:68182699-68182718 | None:intergenic | 45.0% | |
| TTTCAGTTTGTGCCCCGATA+TGG | + | chr1_1:68182714-68182733 | Msa0038650:CDS | 45.0% | |
| TTCAGTTTGTGCCCCGATAT+GGG | + | chr1_1:68182715-68182734 | Msa0038650:CDS | 45.0% | |
| ACACAATCTCCTCCCATATC+GGG | - | chr1_1:68182730-68182749 | None:intergenic | 45.0% | |
| TCCTTCTCCCATCTTTAACC+AGG | + | chr1_1:68182759-68182778 | Msa0038650:CDS | 45.0% | |
| ACCTGGTTAAAGATGGGAGA+AGG | - | chr1_1:68182763-68182782 | None:intergenic | 45.0% | |
| GGCATGTACCTGGTTAAAGA+TGG | - | chr1_1:68182770-68182789 | None:intergenic | 45.0% | |
| ACTAATACTGCACTCCACAC+AGG | - | chr1_1:68182791-68182810 | None:intergenic | 45.0% | |
| GCCACTTGTATTTCTTGGCA+TGG | + | chr1_1:68182859-68182878 | Msa0038650:CDS | 45.0% | |
| GTGCTGTATTTGTACGGTCT+AGG | + | chr1_1:68182888-68182907 | Msa0038650:CDS | 45.0% | |
| !!! | ATTGTTTTTTATTTATTATT+TGG | + | chr1_1:68179160-68179179 | Msa0038650:intron | 5.0% |
| TGAATCCGTTGCTGAGGAAG+GGG | + | chr1_1:68178722-68178741 | Msa0038650:five_prime_UTR | 50.0% | |
| TCTTACCCCTTCCTCAGCAA+CGG | - | chr1_1:68178730-68178749 | None:intergenic | 50.0% | |
| ! | CATCCTTAGCATTGGGTCTG+TGG | + | chr1_1:68178786-68178805 | Msa0038650:five_prime_UTR | 50.0% |
| !! | TGACGGATTGGGAGAGAGAA+GGG | - | chr1_1:68178947-68178966 | None:intergenic | 50.0% |
| GGAAAGCGAGAAGAGGTAGT+TGG | - | chr1_1:68179007-68179026 | None:intergenic | 50.0% | |
| TTGGAGTGGAAAGCGAGAAG+AGG | - | chr1_1:68179014-68179033 | None:intergenic | 50.0% | |
| ! | AAAGGGGAGCCTTGTCATAG+TGG | + | chr1_1:68179626-68179645 | Msa0038650:intron | 50.0% |
| CCCACTTATGCACCCGAATA+AGG | + | chr1_1:68179781-68179800 | Msa0038650:intron | 50.0% | |
| CCCTTATTCGGGTGCATAAG+TGG | - | chr1_1:68179785-68179804 | None:intergenic | 50.0% | |
| CTCCTGCAATGGAAGAGTCT+AGG | - | chr1_1:68179918-68179937 | None:intergenic | 50.0% | |
| TGGCACAACAGGGCAATGTT+TGG | - | chr1_1:68179990-68180009 | None:intergenic | 50.0% | |
| GTAGACACAGCAGATGGGTA+AGG | - | chr1_1:68180332-68180351 | None:intergenic | 50.0% | |
| TACCCATCTGCTGTGTCTAC+CGG | + | chr1_1:68180332-68180351 | Msa0038650:intron | 50.0% | |
| ATCCGGTAGACACAGCAGAT+GGG | - | chr1_1:68180337-68180356 | None:intergenic | 50.0% | |
| AGGTTCTTCAGATGCTTCCC+TGG | - | chr1_1:68180420-68180439 | None:intergenic | 50.0% | |
| ATGAACCCGAACGCAACTAC+AGG | - | chr1_1:68180440-68180459 | None:intergenic | 50.0% | |
| AGCAGGGGTTCTGTTGTAGA+AGG | + | chr1_1:68180645-68180664 | Msa0038650:intron | 50.0% | |
| GCAGGGGTTCTGTTGTAGAA+GGG | + | chr1_1:68180646-68180665 | Msa0038650:intron | 50.0% | |
| CACTGCCCCTATTATCCTGA+AGG | - | chr1_1:68180818-68180837 | None:intergenic | 50.0% | |
| CAGGATAATAGGGGCAGTGA+AGG | + | chr1_1:68180819-68180838 | Msa0038650:intron | 50.0% | |
| AGGGGCAGTGAAGGAGTTAA+AGG | + | chr1_1:68180828-68180847 | Msa0038650:intron | 50.0% | |
| GGGGCAGTGAAGGAGTTAAA+GGG | + | chr1_1:68180829-68180848 | Msa0038650:intron | 50.0% | |
| GTAGAAGAGGGAACTCTTGG+AGG | + | chr1_1:68180939-68180958 | Msa0038650:intron | 50.0% | |
| AGAAGAGGGAACTCTTGGAG+GGG | + | chr1_1:68180941-68180960 | Msa0038650:intron | 50.0% | |
| TCAACTGGCAGTCTGATGAG+AGG | + | chr1_1:68181130-68181149 | Msa0038650:intron | 50.0% | |
| TGTGTGAGTGTGTGTGTGTG+TGG | - | chr1_1:68181409-68181428 | None:intergenic | 50.0% | |
| CCAGGGTTCAACACTGAGAA+CGG | - | chr1_1:68181636-68181655 | None:intergenic | 50.0% | |
| ACCCTGGAAAGTTCCTTGGA+CGG | + | chr1_1:68181649-68181668 | Msa0038650:CDS | 50.0% | |
| ACAATGGTCTTTGCCGTCCA+AGG | - | chr1_1:68181665-68181684 | None:intergenic | 50.0% | |
| GACGGCAAAGACCATTGTTC+AGG | + | chr1_1:68181667-68181686 | Msa0038650:CDS | 50.0% | |
| TATACGGTGAAGGGGTAGGA+AGG | - | chr1_1:68181779-68181798 | None:intergenic | 50.0% | |
| CAAACTAAGTCGGGTTCTGC+AGG | + | chr1_1:68182289-68182308 | Msa0038650:intron | 50.0% | |
| TTCTGCAGGTTATGCTCCTC+TGG | + | chr1_1:68182303-68182322 | Msa0038650:intron | 50.0% | |
| CTCTTGACAGATGTTGCCGA+AGG | + | chr1_1:68182431-68182450 | Msa0038650:CDS | 50.0% | |
| GACAGATGTTGCCGAAGGTA+TGG | + | chr1_1:68182436-68182455 | Msa0038650:CDS | 50.0% | |
| ! | GATGTTGCCGAAGGTATGGT+TGG | + | chr1_1:68182440-68182459 | Msa0038650:CDS | 50.0% |
| TTGAACCAGTCAGACGAGAG+TGG | - | chr1_1:68182503-68182522 | None:intergenic | 50.0% | |
| GGGAAGTGGCAGTTTGATGT+CGG | + | chr1_1:68182536-68182555 | Msa0038650:CDS | 50.0% | |
| ! | GTGGCAGTTTGATGTCGGTT+TGG | + | chr1_1:68182541-68182560 | Msa0038650:CDS | 50.0% |
| GATTGATGAGGGGGAACATG+AGG | - | chr1_1:68182571-68182590 | None:intergenic | 50.0% | |
| TCTACACTCGAGACCGTAAC+TGG | - | chr1_1:68182641-68182660 | None:intergenic | 50.0% | |
| CTGAAACTACCACCGCATAG+AGG | - | chr1_1:68182700-68182719 | None:intergenic | 50.0% | |
| CACAATCTCCTCCCATATCG+GGG | - | chr1_1:68182729-68182748 | None:intergenic | 50.0% | |
| TGGGAGGAGATTGTGTTTCG+TGG | + | chr1_1:68182734-68182753 | Msa0038650:CDS | 50.0% | |
| TAACCAGGTACATGCCTGTG+TGG | + | chr1_1:68182774-68182793 | Msa0038650:CDS | 50.0% | |
| !! | GACGGATTGGGAGAGAGAAG+GGG | - | chr1_1:68178946-68178965 | None:intergenic | 55.0% |
| !! | GTGACGGATTGGGAGAGAGA+AGG | - | chr1_1:68178948-68178967 | None:intergenic | 55.0% |
| GATCCGGTAGACACAGCAGA+TGG | - | chr1_1:68180338-68180357 | None:intergenic | 55.0% | |
| GAAGAGGGAACTCTTGGAGG+GGG | + | chr1_1:68180942-68180961 | Msa0038650:intron | 55.0% | |
| AAGAGGGAACTCTTGGAGGG+GGG | + | chr1_1:68180943-68180962 | Msa0038650:intron | 55.0% | |
| ! | CCGTTCTCAGTGTTGAACCC+TGG | + | chr1_1:68181633-68181652 | Msa0038650:CDS | 55.0% |
| GCCGTCCAAGGAACTTTCCA+GGG | - | chr1_1:68181653-68181672 | None:intergenic | 55.0% | |
| TGCCGTCCAAGGAACTTTCC+AGG | - | chr1_1:68181654-68181673 | None:intergenic | 55.0% | |
| CACAGGGTCTCGTGCTACAA+TGG | - | chr1_1:68182669-68182688 | None:intergenic | 55.0% | |
| CATTGTAGCACGAGACCCTG+TGG | + | chr1_1:68182667-68182686 | Msa0038650:CDS | 55.0% | |
| CATAGAGGGCCATTGCCACA+GGG | - | chr1_1:68182685-68182704 | None:intergenic | 55.0% | |
| TGTGGCAATGGCCCTCTATG+CGG | + | chr1_1:68182685-68182704 | Msa0038650:CDS | 55.0% | |
| AGTTTGTGCCCCGATATGGG+AGG | + | chr1_1:68182718-68182737 | Msa0038650:CDS | 55.0% | |
| ACTCCACACAGGCATGTACC+TGG | - | chr1_1:68182780-68182799 | None:intergenic | 55.0% | |
| AGCACGAGACCCTGTGGCAA+TGG | + | chr1_1:68182673-68182692 | Msa0038650:CDS | 60.0% | |
| GCATAGAGGGCCATTGCCAC+AGG | - | chr1_1:68182686-68182705 | None:intergenic | 60.0% | |
| GGCAATGGCCCTCTATGCGG+TGG | + | chr1_1:68182688-68182707 | Msa0038650:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 68178702 | 68182995 | 68178702 | ID=Msa0038650;Name=Msa0038650 |
| chr1_1 | mRNA | 68178702 | 68182995 | 68178702 | ID=Msa0038650-mRNA-1;Parent=Msa0038650;Name=Msa0038650-mRNA-1;_AED=0.20;_eAED=0.20;_QI=212|1|1|1|1|1|4|16|343 |
| chr1_1 | exon | 68178702 | 68179054 | 68178702 | ID=Msa0038650-mRNA-1:exon:22192;Parent=Msa0038650-mRNA-1 |
| chr1_1 | exon | 68179359 | 68179514 | 68179359 | ID=Msa0038650-mRNA-1:exon:22193;Parent=Msa0038650-mRNA-1 |
| chr1_1 | exon | 68181623 | 68181688 | 68181623 | ID=Msa0038650-mRNA-1:exon:22194;Parent=Msa0038650-mRNA-1 |
| chr1_1 | exon | 68182311 | 68182995 | 68182311 | ID=Msa0038650-mRNA-1:exon:22195;Parent=Msa0038650-mRNA-1 |
| chr1_1 | five_prime_UTR | 68178702 | 68178913 | 68178702 | ID=Msa0038650-mRNA-1:five_prime_utr;Parent=Msa0038650-mRNA-1 |
| chr1_1 | CDS | 68178914 | 68179054 | 68178914 | ID=Msa0038650-mRNA-1:cds;Parent=Msa0038650-mRNA-1 |
| chr1_1 | CDS | 68179359 | 68179514 | 68179359 | ID=Msa0038650-mRNA-1:cds;Parent=Msa0038650-mRNA-1 |
| chr1_1 | CDS | 68181623 | 68181688 | 68181623 | ID=Msa0038650-mRNA-1:cds;Parent=Msa0038650-mRNA-1 |
| chr1_1 | CDS | 68182311 | 68182979 | 68182311 | ID=Msa0038650-mRNA-1:cds;Parent=Msa0038650-mRNA-1 |
| chr1_1 | three_prime_UTR | 68182980 | 68182995 | 68182980 | ID=Msa0038650-mRNA-1:three_prime_utr;Parent=Msa0038650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
