Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0727860 | XP_024640438.1 | 99.335 | 451 | 3 | 0 | 1 | 451 | 1 | 451 | 0.0 | 927 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0727860 | sp|Q8LJW3|ACR4_ARATH | 74.670 | 454 | 101 | 5 | 9 | 451 | 1 | 451 | 0.0 | 680 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0727860 | G7JY63 | 99.335 | 451 | 3 | 0 | 1 | 451 | 1 | 451 | 0.0 | 927 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001550 | Msa0727860 | -0.816048 | 6.758952e-52 | -8.615850e-47 |
| Msa0002110 | Msa0727860 | -0.830475 | 2.876692e-55 | -8.615850e-47 |
| Msa0004180 | Msa0727860 | -0.800992 | 1.110848e-48 | -8.615850e-47 |
| Msa0017300 | Msa0727860 | -0.832419 | 9.557827e-56 | -8.615850e-47 |
| Msa0027020 | Msa0727860 | -0.803285 | 3.750249e-49 | -8.615850e-47 |
| Msa0038650 | Msa0727860 | -0.803471 | 3.432214e-49 | -8.615850e-47 |
| Msa0065670 | Msa0727860 | -0.833296 | 5.786355e-56 | -8.615850e-47 |
| Msa0093360 | Msa0727860 | -0.808818 | 2.568805e-50 | -8.615850e-47 |
| Msa0095810 | Msa0727860 | -0.824385 | 8.308633e-54 | -8.615850e-47 |
| Msa0111110 | Msa0727860 | -0.820732 | 5.871148e-53 | -8.615850e-47 |
| Msa0120100 | Msa0727860 | -0.821669 | 3.571316e-53 | -8.615850e-47 |
| Msa0120160 | Msa0727860 | -0.828804 | 7.333377e-55 | -8.615850e-47 |
| Msa0606340 | Msa0727860 | -0.801707 | 7.931247e-49 | -8.615850e-47 |
| Msa0654850 | Msa0727860 | -0.818179 | 2.243307e-52 | -8.615850e-47 |
| Msa0684030 | Msa0727860 | -0.805614 | 1.225994e-49 | -8.615850e-47 |
| Msa0695250 | Msa0727860 | -0.806210 | 9.188590e-50 | -8.615850e-47 |
| Msa0727860 | Msa0750200 | -0.803314 | 3.698807e-49 | -8.615850e-47 |
| Msa0727860 | Msa0769300 | 0.843995 | 9.939498e-59 | -8.615850e-47 |
| Msa0727860 | Msa0788450 | -0.803031 | 4.232227e-49 | -8.615850e-47 |
| Msa0727860 | Msa0794900 | -0.813279 | 2.773605e-51 | -8.615850e-47 |
| Msa0727860 | Msa0825570 | -0.803149 | 4.001412e-49 | -8.615850e-47 |
| Msa0727860 | Msa0826540 | -0.806865 | 6.682347e-50 | -8.615850e-47 |
| Msa0727860 | Msa0829210 | -0.801413 | 9.111240e-49 | -8.615850e-47 |
| Msa0727860 | Msa0864820 | -0.807585 | 4.703752e-50 | -8.615850e-47 |
| Msa0727860 | Msa0868510 | -0.802248 | 6.140077e-49 | -8.615850e-47 |
| Msa0727860 | Msa0869420 | -0.814174 | 1.761966e-51 | -8.615850e-47 |
| Msa0727860 | Msa0882480 | -0.813620 | 2.334110e-51 | -8.615850e-47 |
| Msa0727860 | Msa0945160 | -0.813355 | 2.668751e-51 | -8.615850e-47 |
| Msa0727860 | Msa0964400 | -0.816974 | 4.193482e-52 | -8.615850e-47 |
| Msa0727860 | Msa0971690 | -0.812997 | 3.198424e-51 | -8.615850e-47 |
| Msa0727860 | Msa0978550 | -0.801821 | 7.515293e-49 | -8.615850e-47 |
| Msa0727860 | Msa1002550 | -0.824671 | 7.113454e-54 | -8.615850e-47 |
| Msa0727860 | Msa1031190 | -0.803238 | 3.835641e-49 | -8.615850e-47 |
| Msa0727860 | Msa1070370 | -0.801714 | 7.905331e-49 | -8.615850e-47 |
| Msa0727860 | Msa1078120 | -0.808108 | 3.642258e-50 | -8.615850e-47 |
| Msa0727860 | Msa1091400 | -0.812357 | 4.416151e-51 | -8.615850e-47 |
| Msa0727860 | Msa1119420 | -0.803410 | 3.532670e-49 | -8.615850e-47 |
| Msa0727860 | Msa1130150 | -0.823328 | 1.469671e-53 | -8.615850e-47 |
| Msa0727860 | Msa1158180 | -0.802268 | 6.081712e-49 | -8.615850e-47 |
| Msa0727860 | Msa1199700 | -0.832197 | 1.084513e-55 | -8.615850e-47 |
| Msa0727860 | Msa1212150 | -0.813775 | 2.157303e-51 | -8.615850e-47 |
| Msa0727860 | Msa1279250 | -0.809724 | 1.642741e-50 | -8.615850e-47 |
| Msa0727860 | Msa1295480 | -0.804669 | 1.933373e-49 | -8.615850e-47 |
| Msa0727860 | Msa1350590 | -0.800144 | 1.654351e-48 | -8.615850e-47 |
| Msa0727860 | Msa1375610 | -0.811747 | 5.997303e-51 | -8.615850e-47 |
| Msa0727860 | Msa1376550 | -0.809051 | 2.290193e-50 | -8.615850e-47 |
| Msa0727860 | Msa1386910 | -0.818299 | 2.107700e-52 | -8.615850e-47 |
| Msa0727860 | Msa1395380 | -0.801554 | 8.525640e-49 | -8.615850e-47 |
| Msa0727860 | Msa1408230 | -0.803336 | 3.660115e-49 | -8.615850e-47 |
| Msa0727860 | Msa1410480 | -0.800896 | 1.162136e-48 | -8.615850e-47 |
| Msa0727860 | Msa1410500 | -0.807683 | 4.483146e-50 | -8.615850e-47 |
| Msa0727860 | Msa1415510 | -0.809353 | 1.973435e-50 | -8.615850e-47 |
| Msa0727860 | Msa1440140 | -0.801943 | 7.094215e-49 | -8.615850e-47 |
| Msa0727860 | Msa1444130 | -0.805668 | 1.194684e-49 | -8.615850e-47 |
| Msa0158890 | Msa0727860 | -0.800399 | 1.467986e-48 | -8.615850e-47 |
| Msa0175240 | Msa0727860 | -0.805884 | 1.075840e-49 | -8.615850e-47 |
| Msa0187590 | Msa0727860 | -0.813062 | 3.095442e-51 | -8.615850e-47 |
| Msa0211590 | Msa0727860 | -0.825748 | 3.958119e-54 | -8.615850e-47 |
| Msa0225190 | Msa0727860 | -0.830577 | 2.715721e-55 | -8.615850e-47 |
| Msa0380400 | Msa0727860 | -0.806622 | 7.523369e-50 | -8.615850e-47 |
| Msa0380450 | Msa0727860 | -0.801301 | 9.607016e-49 | -8.615850e-47 |
| Msa0382050 | Msa0727860 | -0.808928 | 2.433842e-50 | -8.615850e-47 |
| Msa0397420 | Msa0727860 | -0.820252 | 7.568278e-53 | -8.615850e-47 |
| Msa0428270 | Msa0727860 | -0.809760 | 1.613303e-50 | -8.615850e-47 |
| Msa0431550 | Msa0727860 | -0.800454 | 1.430744e-48 | -8.615850e-47 |
| Msa0437820 | Msa0727860 | -0.803481 | 3.414722e-49 | -8.615850e-47 |
| Msa0474660 | Msa0727860 | -0.817245 | 3.645126e-52 | -8.615850e-47 |
| Msa0476170 | Msa0727860 | -0.819614 | 1.058998e-52 | -8.615850e-47 |
| Msa0476890 | Msa0727860 | -0.802772 | 4.786687e-49 | -8.615850e-47 |
| Msa0241750 | Msa0727860 | 0.812629 | 3.849983e-51 | -8.615850e-47 |
| Msa0261350 | Msa0727860 | -0.809346 | 1.980199e-50 | -8.615850e-47 |
| Msa0262350 | Msa0727860 | -0.810500 | 1.117484e-50 | -8.615850e-47 |
| Msa0266330 | Msa0727860 | -0.800698 | 1.275324e-48 | -8.615850e-47 |
| Msa0269080 | Msa0727860 | -0.805255 | 1.458295e-49 | -8.615850e-47 |
| Msa0299130 | Msa0727860 | -0.807166 | 5.770832e-50 | -8.615850e-47 |
| Msa0300130 | Msa0727860 | -0.821122 | 4.775322e-53 | -8.615850e-47 |
| Msa0331070 | Msa0727860 | -0.806392 | 8.412051e-50 | -8.615850e-47 |
| Msa0340700 | Msa0727860 | -0.808029 | 3.786212e-50 | -8.615850e-47 |
| Msa0341950 | Msa0727860 | -0.800386 | 1.477118e-48 | -8.615850e-47 |
| Msa0484590 | Msa0727860 | -0.803018 | 4.257678e-49 | -8.615850e-47 |
| Msa0506700 | Msa0727860 | -0.808998 | 2.351431e-50 | -8.615850e-47 |
| Msa0550990 | Msa0727860 | -0.807685 | 4.479006e-50 | -8.615850e-47 |
| Msa0557440 | Msa0727860 | -0.801312 | 9.555820e-49 | -8.615850e-47 |
| Msa0559650 | Msa0727860 | -0.812769 | 3.588278e-51 | -8.615850e-47 |
| Msa0561450 | Msa0727860 | -0.800562 | 1.359440e-48 | -8.615850e-47 |
| Msa0570050 | Msa0727860 | 0.834791 | 2.443543e-56 | -8.615850e-47 |
| Msa0580890 | Msa0727860 | -0.802686 | 4.987026e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0727860 | MtrunA17_Chr5g0420221 | 99.335 | 451 | 3 | 0 | 1 | 451 | 1 | 451 | 0.0 | 927 |
| Msa0727860 | MtrunA17_Chr7g0224571 | 59.729 | 442 | 171 | 4 | 17 | 451 | 1 | 442 | 0.0 | 541 |
| Msa0727860 | MtrunA17_Chr7g0222461 | 58.093 | 451 | 176 | 6 | 11 | 451 | 4 | 451 | 5.28e-177 | 503 |
| Msa0727860 | MtrunA17_Chr3g0125661 | 54.940 | 415 | 174 | 5 | 16 | 418 | 8 | 421 | 1.64e-153 | 443 |
| Msa0727860 | MtrunA17_Chr4g0056741 | 52.489 | 442 | 193 | 4 | 19 | 451 | 8 | 441 | 3.77e-153 | 442 |
| Msa0727860 | MtrunA17_Chr1g0159541 | 52.596 | 443 | 189 | 7 | 16 | 437 | 8 | 450 | 4.27e-153 | 442 |
| Msa0727860 | MtrunA17_Chr5g0398581 | 51.131 | 442 | 199 | 4 | 19 | 451 | 8 | 441 | 7.29e-147 | 426 |
| Msa0727860 | MtrunA17_Chr5g0400941 | 46.318 | 421 | 199 | 7 | 17 | 411 | 9 | 428 | 3.55e-120 | 359 |
| Msa0727860 | MtrunA17_Chr4g0054261 | 41.333 | 450 | 225 | 9 | 2 | 418 | 14 | 457 | 8.85e-109 | 330 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0727860 | AT1G69040.2 | 74.398 | 457 | 103 | 5 | 6 | 451 | 2 | 455 | 0.0 | 682 |
| Msa0727860 | AT1G69040.1 | 74.670 | 454 | 101 | 5 | 9 | 451 | 1 | 451 | 0.0 | 680 |
| Msa0727860 | AT2G03730.2 | 68.777 | 458 | 126 | 7 | 7 | 449 | 1 | 456 | 0.0 | 618 |
| Msa0727860 | AT2G03730.1 | 68.777 | 458 | 126 | 7 | 7 | 449 | 1 | 456 | 0.0 | 618 |
| Msa0727860 | AT3G01990.7 | 64.885 | 393 | 134 | 3 | 18 | 408 | 17 | 407 | 0.0 | 513 |
| Msa0727860 | AT3G01990.5 | 64.885 | 393 | 134 | 3 | 18 | 408 | 17 | 407 | 0.0 | 513 |
| Msa0727860 | AT3G01990.6 | 64.885 | 393 | 134 | 3 | 18 | 408 | 17 | 407 | 0.0 | 513 |
| Msa0727860 | AT3G01990.11 | 64.885 | 393 | 134 | 3 | 18 | 408 | 3 | 393 | 0.0 | 512 |
| Msa0727860 | AT3G01990.10 | 64.885 | 393 | 134 | 3 | 18 | 408 | 3 | 393 | 0.0 | 512 |
| Msa0727860 | AT3G01990.1 | 64.885 | 393 | 134 | 3 | 18 | 408 | 3 | 393 | 0.0 | 512 |
| Msa0727860 | AT1G76990.4 | 56.650 | 406 | 167 | 3 | 16 | 412 | 8 | 413 | 1.38e-156 | 451 |
| Msa0727860 | AT1G76990.5 | 56.650 | 406 | 167 | 3 | 16 | 412 | 8 | 413 | 1.38e-156 | 451 |
| Msa0727860 | AT1G76990.2 | 56.650 | 406 | 167 | 3 | 16 | 412 | 8 | 413 | 1.38e-156 | 451 |
| Msa0727860 | AT1G76990.3 | 56.650 | 406 | 167 | 3 | 16 | 412 | 8 | 413 | 1.38e-156 | 451 |
| Msa0727860 | AT1G76990.1 | 56.650 | 406 | 167 | 3 | 16 | 412 | 8 | 413 | 1.38e-156 | 451 |
| Msa0727860 | AT3G01990.4 | 64.242 | 330 | 114 | 3 | 18 | 345 | 17 | 344 | 5.22e-149 | 428 |
| Msa0727860 | AT3G01990.2 | 65.231 | 325 | 109 | 3 | 18 | 340 | 17 | 339 | 7.44e-149 | 427 |
| Msa0727860 | AT3G01990.9 | 64.242 | 330 | 114 | 3 | 18 | 345 | 3 | 330 | 1.41e-148 | 426 |
| Msa0727860 | AT1G12420.1 | 52.036 | 442 | 195 | 7 | 19 | 451 | 8 | 441 | 3.82e-145 | 422 |
| Msa0727860 | AT4G22780.1 | 48.894 | 452 | 200 | 8 | 19 | 450 | 8 | 448 | 1.28e-134 | 395 |
| Msa0727860 | AT4G22780.1 | 30.233 | 172 | 100 | 3 | 13 | 179 | 214 | 370 | 1.02e-12 | 70.1 |
| Msa0727860 | AT4G22780.2 | 48.894 | 452 | 200 | 8 | 19 | 450 | 8 | 448 | 1.28e-134 | 395 |
| Msa0727860 | AT4G22780.2 | 30.233 | 172 | 100 | 3 | 13 | 179 | 214 | 370 | 1.02e-12 | 70.1 |
| Msa0727860 | AT3G01990.3 | 64.828 | 290 | 98 | 3 | 18 | 305 | 17 | 304 | 1.62e-127 | 372 |
| Msa0727860 | AT3G01990.8 | 64.828 | 290 | 98 | 3 | 18 | 305 | 3 | 290 | 2.22e-127 | 371 |
| Msa0727860 | AT5G25320.1 | 43.791 | 459 | 214 | 8 | 16 | 430 | 8 | 466 | 2.37e-127 | 379 |
| Msa0727860 | AT5G25320.3 | 43.794 | 427 | 198 | 6 | 46 | 430 | 1 | 427 | 3.90e-120 | 358 |
| Msa0727860 | AT5G65890.1 | 40.381 | 473 | 217 | 9 | 9 | 431 | 2 | 459 | 1.19e-110 | 335 |
| Msa0727860 | AT5G65890.3 | 40.381 | 473 | 217 | 9 | 9 | 431 | 2 | 459 | 1.19e-110 | 335 |
| Msa0727860 | AT1G12420.2 | 48.806 | 377 | 176 | 7 | 84 | 451 | 1 | 369 | 3.38e-110 | 330 |
| Msa0727860 | AT5G25320.2 | 42.896 | 366 | 168 | 7 | 16 | 340 | 8 | 373 | 1.40e-96 | 295 |
| Msa0727860 | AT5G65890.4 | 39.336 | 422 | 191 | 9 | 60 | 431 | 1 | 407 | 1.76e-92 | 286 |
| Msa0727860 | AT5G65890.2 | 39.336 | 422 | 191 | 9 | 60 | 431 | 1 | 407 | 1.76e-92 | 286 |
| Msa0727860 | AT5G65890.5 | 39.466 | 337 | 161 | 7 | 130 | 431 | 17 | 345 | 3.83e-71 | 229 |
Find 110 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAAAATGCCACTGTTATA+AGG | 0.177173 | 5_1:+31155780 | Msa0727860:CDS |
| GGTAACAGATGAAGTCATTT+TGG | 0.193644 | 5_1:+31156179 | Msa0727860:CDS |
| CCCATTATAGTTCTTGATTA+AGG | 0.196626 | 5_1:-31154815 | None:intergenic |
| TTCTATGTTCGCGGAGCTTC+TGG | 0.235707 | 5_1:+31157902 | Msa0727860:CDS |
| CTGTTACCTTGTTTCCATCT+TGG | 0.252705 | 5_1:-31156164 | None:intergenic |
| TCCTTAATCAAGAACTATAA+TGG | 0.259593 | 5_1:+31154814 | Msa0727860:exon |
| TCTCAGAAGCTTGACTCTTT+AGG | 0.259970 | 5_1:+31158214 | Msa0727860:three_prime_UTR |
| TTCAGGGTTGTAATTGATAA+TGG | 0.278263 | 5_1:+31155752 | Msa0727860:intron |
| GGAAGTGTGACTTTAGTTTC+AGG | 0.297553 | 5_1:+31158169 | Msa0727860:three_prime_UTR |
| CCACACAGCAATAGAGCTTA+TGG | 0.298609 | 5_1:+31156381 | Msa0727860:CDS |
| AAAGATTTGGAGATGCAAAA+AGG | 0.301210 | 5_1:+31158137 | Msa0727860:three_prime_UTR |
| TTCTGATGGTGGATGGTTCA+TGG | 0.305458 | 5_1:+31156017 | Msa0727860:CDS |
| TATTGTACAGTTGAAAGATT+TGG | 0.322364 | 5_1:+31158124 | Msa0727860:three_prime_UTR |
| CGTTCACTATGTTGCATTTG+AGG | 0.335990 | 5_1:-31156453 | None:intergenic |
| GAATCTTGAGGTACAGATTC+AGG | 0.344720 | 5_1:-31158001 | None:intergenic |
| GTTACCAATTGTTTGCCTAA+TGG | 0.351693 | 5_1:-31157954 | None:intergenic |
| ATCAGATGATGTTTGATGAT+AGG | 0.358215 | 5_1:+31156674 | Msa0727860:CDS |
| TATTACATCAAGCATATAGA+TGG | 0.358620 | 5_1:+31157052 | Msa0727860:CDS |
| CATTTGTATATATACTCATT+TGG | 0.371110 | 5_1:+31158389 | Msa0727860:three_prime_UTR |
| GTAGTTGGAAAGCAGGATTC+AGG | 0.372324 | 5_1:-31156325 | None:intergenic |
| TAGGGTAAAATTTCCTAGAT+TGG | 0.373854 | 5_1:-31154779 | None:intergenic |
| CTCACTTCTGAAAGCAATCC+TGG | 0.377119 | 5_1:-31156415 | None:intergenic |
| CTAAAGATTGATGATCTTGT+AGG | 0.380245 | 5_1:-31158025 | None:intergenic |
| TTGATTAAGGATTGATGAAA+TGG | 0.382296 | 5_1:-31154802 | None:intergenic |
| AGAAAGAACCGAACCAATCT+AGG | 0.389030 | 5_1:+31154766 | Msa0727860:five_prime_UTR |
| TGAGGGGCCACAAGCATATC+AGG | 0.390122 | 5_1:+31156885 | Msa0727860:CDS |
| TCAAAATGCCACTGTTATAA+GGG | 0.390728 | 5_1:+31155781 | Msa0727860:CDS |
| TTGACTCTTTAGGAAGTGTT+TGG | 0.399870 | 5_1:+31158224 | Msa0727860:three_prime_UTR |
| CTGTTGTTACTATTGAATGT+AGG | 0.402093 | 5_1:+31156782 | Msa0727860:CDS |
| TACGTGTTACGTTCGATAAT+AGG | 0.407166 | 5_1:-31157808 | None:intergenic |
| TCAGATGATGTTTGATGATA+GGG | 0.410378 | 5_1:+31156675 | Msa0727860:CDS |
| ACATAGTGAACGCGGAGGTT+TGG | 0.418101 | 5_1:+31156464 | Msa0727860:CDS |
| CCTTAATCAAGAACTATAAT+GGG | 0.419800 | 5_1:+31154815 | Msa0727860:exon |
| CTAAGACAATTGAATCCATT+AGG | 0.420076 | 5_1:+31157939 | Msa0727860:CDS |
| TATTTATGGATTTAGTCTCT+TGG | 0.422919 | 5_1:+31156301 | Msa0727860:intron |
| CAAATGTTGATGTTGTTAAC+TGG | 0.426344 | 5_1:+31156743 | Msa0727860:CDS |
| ACAAGATCATCAATCTTTAG+TGG | 0.431730 | 5_1:+31158028 | Msa0727860:CDS |
| TGTTGTTACTATTGAATGTA+GGG | 0.432062 | 5_1:+31156783 | Msa0727860:CDS |
| TAAAATTTCCTAGATTGGTT+CGG | 0.435370 | 5_1:-31154774 | None:intergenic |
| ATGTGCTTGGTGGTGGAAAC+AGG | 0.437113 | 5_1:+31156593 | Msa0727860:CDS |
| TTTCAAAGTTTACACAATCA+AGG | 0.438775 | 5_1:-31158352 | None:intergenic |
| GAATCCATTAGGCAAACAAT+TGG | 0.439461 | 5_1:+31157950 | Msa0727860:CDS |
| CCTTGGATCCAATCGTTAGT+TGG | 0.442721 | 5_1:+31158307 | Msa0727860:three_prime_UTR |
| CTGTGTAATGTGCTTGGTGG+TGG | 0.460185 | 5_1:+31156586 | Msa0727860:CDS |
| AACACAATACTCAAAGTAAA+GGG | 0.460429 | 5_1:+31157974 | Msa0727860:CDS |
| TCATTTCTCCAACTAACGAT+TGG | 0.461480 | 5_1:-31158315 | None:intergenic |
| ACATTTCTTCTGATGGTGGA+TGG | 0.466352 | 5_1:+31156010 | Msa0727860:CDS |
| CCAACAGATCTCATAGTAGT+TGG | 0.479948 | 5_1:-31156340 | None:intergenic |
| CATGTGACCGACGAGGAAAC+AGG | 0.483221 | 5_1:+31156517 | Msa0727860:CDS |
| CTATTCTCAGTCTCATTACA+TGG | 0.487826 | 5_1:+31155597 | Msa0727860:CDS |
| ATTCGACGCATACTGATAGA+AGG | 0.487974 | 5_1:+31156647 | Msa0727860:CDS |
| TAACACAATACTCAAAGTAA+AGG | 0.491332 | 5_1:+31157973 | Msa0727860:CDS |
| TCTAAATCTCATCATAACTA+AGG | 0.492141 | 5_1:+31155984 | Msa0727860:CDS |
| TTTGACAGATATGCAATATG+TGG | 0.492908 | 5_1:+31156840 | Msa0727860:CDS |
| ACAGTGTCGAAAACAAGCTT+TGG | 0.494289 | 5_1:-31156811 | None:intergenic |
| TGTTGTTAACTGGTCTGATA+AGG | 0.497227 | 5_1:+31156753 | Msa0727860:CDS |
| GTTAACACTTTCTATGTTCG+CGG | 0.497796 | 5_1:+31157893 | Msa0727860:CDS |
| CAGTTAACAACATCAACATT+TGG | 0.498099 | 5_1:-31156742 | None:intergenic |
| TAGAGCTTATGGGAAGTGAT+AGG | 0.500002 | 5_1:+31156392 | Msa0727860:CDS |
| AGAATAGCCTCACAGTTACA+AGG | 0.500098 | 5_1:+31157840 | Msa0727860:CDS |
| GAAGTGTGACTTTAGTTTCA+GGG | 0.500752 | 5_1:+31158170 | Msa0727860:three_prime_UTR |
| TCTCATAGTAGTTGGAAAGC+AGG | 0.503054 | 5_1:-31156332 | None:intergenic |
| AAGGCTTACATTTCTTCTGA+TGG | 0.503999 | 5_1:+31156003 | Msa0727860:CDS |
| CGATAATAGGCCGACTCTGT+CGG | 0.506054 | 5_1:-31157795 | None:intergenic |
| TTAAGGATTGATGAAATGGT+AGG | 0.510582 | 5_1:-31154798 | None:intergenic |
| CACACAGCAATAGAGCTTAT+GGG | 0.511438 | 5_1:+31156382 | Msa0727860:CDS |
| TTTAATGTAACTGACCAAGA+TGG | 0.522792 | 5_1:+31156150 | Msa0727860:CDS |
| ATCGTTAGTTGGAGAAATGA+AGG | 0.524820 | 5_1:+31158318 | Msa0727860:three_prime_UTR |
| CATGCTAATATTGATGCTGA+GGG | 0.531891 | 5_1:+31156868 | Msa0727860:CDS |
| GAGCTTCTGTGTAATGTGCT+TGG | 0.535698 | 5_1:+31156580 | Msa0727860:CDS |
| ACAGAGGCTTTCGCTAATCA+AGG | 0.537275 | 5_1:+31156558 | Msa0727860:CDS |
| GCTTACATTTCTTCTGATGG+TGG | 0.539478 | 5_1:+31156006 | Msa0727860:CDS |
| TGACTTTAGTTTCAGGGAGT+AGG | 0.541199 | 5_1:+31158176 | Msa0727860:three_prime_UTR |
| TCATGCTAATATTGATGCTG+AGG | 0.542296 | 5_1:+31156867 | Msa0727860:CDS |
| TTACTATTGAATGTAGGGAT+AGG | 0.544712 | 5_1:+31156788 | Msa0727860:CDS |
| CCAACTAACGATTGGATCCA+AGG | 0.544885 | 5_1:-31158307 | None:intergenic |
| AGCAGAACCTGTTTCCTCGT+CGG | 0.554657 | 5_1:-31156524 | None:intergenic |
| CTTCTGTGTAATGTGCTTGG+TGG | 0.570795 | 5_1:+31156583 | Msa0727860:CDS |
| GGTGGTGGAAACAGGAAAAG+AGG | 0.576386 | 5_1:+31156601 | Msa0727860:CDS |
| TAAGGATTGATGAAATGGTA+GGG | 0.576796 | 5_1:-31154797 | None:intergenic |
| CCAACTACTATGAGATCTGT+TGG | 0.577524 | 5_1:+31156340 | Msa0727860:CDS |
| TTAGAAGAATGAACCCTCCA+AGG | 0.580242 | 5_1:+31155641 | Msa0727860:CDS |
| TGTTGGTGTTAAACAAACAC+TGG | 0.585143 | 5_1:+31156357 | Msa0727860:CDS |
| ATTACATCAAGCATATAGAT+GGG | 0.598451 | 5_1:+31157053 | Msa0727860:CDS |
| TATTGAGAGAAGAGTTTCTG+AGG | 0.605394 | 5_1:+31157132 | Msa0727860:CDS |
| AAAAGTTAAAGCAAGCATGA+GGG | 0.607224 | 5_1:-31158266 | None:intergenic |
| AAAGTTAAAGCAAGCATGAG+GGG | 0.625283 | 5_1:-31158265 | None:intergenic |
| CTTATGGGAAGTGATAGGCC+AGG | 0.625341 | 5_1:+31156397 | Msa0727860:CDS |
| GCAGAAGTAACAACGAAAGG+AGG | 0.625698 | 5_1:+31157863 | Msa0727860:CDS |
| AGGGCAGAAGTAACAACGAA+AGG | 0.626664 | 5_1:+31157860 | Msa0727860:CDS |
| GAATAGCCTCACAGTTACAA+GGG | 0.627441 | 5_1:+31157841 | Msa0727860:CDS |
| TGATGAGATTTAGATCAGTG+AGG | 0.629185 | 5_1:-31155975 | None:intergenic |
| CTCTGCACCACCGACAGAGT+CGG | 0.631498 | 5_1:+31157785 | Msa0727860:CDS |
| GTTGATAGTGCTAACAAACA+AGG | 0.636397 | 5_1:+31155928 | Msa0727860:CDS |
| TAATAGGCCGACTCTGTCGG+TGG | 0.637822 | 5_1:-31157792 | None:intergenic |
| TGTCTATATGAGATCCCAGT+GGG | 0.639963 | 5_1:+31154606 | Msa0727860:five_prime_UTR |
| ATATATACCTGATATGCTTG+TGG | 0.647448 | 5_1:-31156892 | None:intergenic |
| AACTGACCAAGATGGAAACA+AGG | 0.648970 | 5_1:+31156158 | Msa0727860:CDS |
| CTTCTGCCCTTGTAACTGTG+AGG | 0.651693 | 5_1:-31157847 | None:intergenic |
| TTGTTGTTACAAAGAAACAG+TGG | 0.654042 | 5_1:-31154702 | None:intergenic |
| CCATAAGCTCTATTGCTGTG+TGG | 0.654498 | 5_1:-31156381 | None:intergenic |
| GATGGTGGATGGTTCATGGA+TGG | 0.659799 | 5_1:+31156021 | Msa0727860:CDS |
| TAAACATACCCTTATAACAG+TGG | 0.663440 | 5_1:-31155789 | None:intergenic |
| CAAATGCAACATAGTGAACG+CGG | 0.679127 | 5_1:+31156456 | Msa0727860:CDS |
| GATCTTGTAGGAGAATCTTG+AGG | 0.691540 | 5_1:-31158013 | None:intergenic |
| ATGCTAATATTGATGCTGAG+GGG | 0.720303 | 5_1:+31156869 | Msa0727860:CDS |
| GTGTCTATATGAGATCCCAG+TGG | 0.734748 | 5_1:+31154605 | Msa0727860:five_prime_UTR |
| ATGCAACATAGTGAACGCGG+AGG | 0.752860 | 5_1:+31156459 | Msa0727860:CDS |
| CTGCTATAACTGACTCACAG+AGG | 0.754139 | 5_1:+31156542 | Msa0727860:CDS |
| TGTGATGCATGTGACCGACG+AGG | 0.784173 | 5_1:+31156510 | Msa0727860:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTGTTAAATGTTAAAA+TGG | - | chr5_1:31155679-31155698 | None:intergenic | 10.0% |
| !! | TATTTACTAAAATATTGTTT+AGG | - | chr5_1:31157603-31157622 | None:intergenic | 10.0% |
| !!! | AAATTTTTTGATGTTTTCTA+TGG | + | chr5_1:31154926-31154945 | Msa0727860:intron | 15.0% |
| !!! | TAAAAAAGCTTATTCTTTTA+TGG | + | chr5_1:31155224-31155243 | Msa0727860:intron | 15.0% |
| !!! | AAAAAAGCTTATTCTTTTAT+GGG | + | chr5_1:31155225-31155244 | Msa0727860:intron | 15.0% |
| !! | AAATAGATACAAAATTTGAA+TGG | + | chr5_1:31155695-31155714 | Msa0727860:intron | 15.0% |
| !!! | TTTTTTTGTTGTTGAAATTT+TGG | + | chr5_1:31155876-31155895 | Msa0727860:intron | 15.0% |
| !!! | AAAGTTAATTTGTATTTTGT+AGG | + | chr5_1:31155906-31155925 | Msa0727860:intron | 15.0% |
| !! | ATATATATTTAGAGAAAAAG+TGG | - | chr5_1:31156059-31156078 | None:intergenic | 15.0% |
| !!! | TTGATTTTTTTTTTATGTTC+TGG | + | chr5_1:31156117-31156136 | Msa0727860:intron | 15.0% |
| !! | TTTATTTGTAAAGATTAAAG+TGG | - | chr5_1:31156925-31156944 | None:intergenic | 15.0% |
| !! | TTAATCTTTACAAATAAACA+TGG | + | chr5_1:31156927-31156946 | Msa0727860:intron | 15.0% |
| !! | TATATTTGATTGTATATTGT+AGG | + | chr5_1:31157027-31157046 | Msa0727860:intron | 15.0% |
| !! | TCATAAATTAGTAAATTAAG+TGG | - | chr5_1:31157324-31157343 | None:intergenic | 15.0% |
| !!! | CACATGTTATTTAAAATAAA+GGG | - | chr5_1:31157463-31157482 | None:intergenic | 15.0% |
| !!! | TCACATGTTATTTAAAATAA+AGG | - | chr5_1:31157464-31157483 | None:intergenic | 15.0% |
| !!! | TTTGTTTTGTTAATTTGTTA+AGG | + | chr5_1:31157748-31157767 | Msa0727860:intron | 15.0% |
| !!! | TTGTTTTGTTAATTTGTTAA+GGG | + | chr5_1:31157749-31157768 | Msa0727860:intron | 15.0% |
| !! | AAAACAAGAACAAAAACAAA+AGG | - | chr5_1:31154993-31155012 | None:intergenic | 20.0% |
| !! | TTATTCATCTTCTTTACAAT+TGG | + | chr5_1:31155284-31155303 | Msa0727860:intron | 20.0% |
| !! | ACATATAATAGGATAATGAT+GGG | - | chr5_1:31155431-31155450 | None:intergenic | 20.0% |
| !! | TACATATAATAGGATAATGA+TGG | - | chr5_1:31155432-31155451 | None:intergenic | 20.0% |
| !!! | TTTATGTTCTATGTTTTGAT+TGG | + | chr5_1:31155519-31155538 | Msa0727860:intron | 20.0% |
| !! | AAATCAACAAGTAAAAAATG+AGG | - | chr5_1:31155726-31155745 | None:intergenic | 20.0% |
| !!! | TTGTTGATTTGTTTTTTTCA+GGG | + | chr5_1:31155736-31155755 | Msa0727860:intron | 20.0% |
| !!! | TTGATAATCTTAACTTTTTG+AGG | + | chr5_1:31156087-31156106 | Msa0727860:intron | 20.0% |
| !!! | TGATAATCTTAACTTTTTGA+GGG | + | chr5_1:31156088-31156107 | Msa0727860:intron | 20.0% |
| !! | ACATTGTTTGATTCTATTTA+TGG | + | chr5_1:31156287-31156306 | Msa0727860:intron | 20.0% |
| !! | ATCATATAACATAGAAAAGT+AGG | - | chr5_1:31157401-31157420 | None:intergenic | 20.0% |
| !!! | TTATTTAAAATAAAGGGTCA+TGG | - | chr5_1:31157457-31157476 | None:intergenic | 20.0% |
| !!! | ACATGTTTATTTTATACAAG+TGG | + | chr5_1:31157656-31157675 | Msa0727860:intron | 20.0% |
| !! | CATTTGTATATATACTCATT+TGG | + | chr5_1:31158389-31158408 | Msa0727860:three_prime_UTR | 20.0% |
| ! | AAAAATAAAAACAACCCACT+GGG | - | chr5_1:31154623-31154642 | None:intergenic | 25.0% |
| ! | AAAAAATAAAAACAACCCAC+TGG | - | chr5_1:31154624-31154643 | None:intergenic | 25.0% |
| !! | TAAAATTTCCTAGATTGGTT+CGG | - | chr5_1:31154777-31154796 | None:intergenic | 25.0% |
| ! | TTGATTAAGGATTGATGAAA+TGG | - | chr5_1:31154805-31154824 | None:intergenic | 25.0% |
| ! | TCCTTAATCAAGAACTATAA+TGG | + | chr5_1:31154814-31154833 | Msa0727860:exon | 25.0% |
| ! | CCTTAATCAAGAACTATAAT+GGG | + | chr5_1:31154815-31154834 | Msa0727860:exon | 25.0% |
| ! | GTTCTTAAATTTCTGTTTCA+TGG | + | chr5_1:31154889-31154908 | Msa0727860:intron | 25.0% |
| !! | TTTCTATGGTTTTTGTCTTT+TGG | + | chr5_1:31154940-31154959 | Msa0727860:intron | 25.0% |
| !! | TTCTATGGTTTTTGTCTTTT+GGG | + | chr5_1:31154941-31154960 | Msa0727860:intron | 25.0% |
| !!! | GTTCTTGTTTTTTGTTTCTT+TGG | + | chr5_1:31155002-31155021 | Msa0727860:intron | 25.0% |
| !!! | TGTTTTTTGTTTCTTTGGTT+TGG | + | chr5_1:31155007-31155026 | Msa0727860:intron | 25.0% |
| ! | CAATTTGTGTTATCTAATTG+AGG | - | chr5_1:31155066-31155085 | None:intergenic | 25.0% |
| ! | TGTGTTTAGTTAGCAAAATA+TGG | + | chr5_1:31155178-31155197 | Msa0727860:intron | 25.0% |
| !! | CTTATTCTTTTATGGGTTTT+TGG | + | chr5_1:31155232-31155251 | Msa0727860:intron | 25.0% |
| !! | AGAGAAAAAGAGGAATATTT+TGG | - | chr5_1:31155345-31155364 | None:intergenic | 25.0% |
| !!! | TACTAGCTTTTGATTTTCAT+TGG | + | chr5_1:31155488-31155507 | Msa0727860:intron | 25.0% |
| ! | AATGGAAAAAATTAGTACCT+TGG | - | chr5_1:31155661-31155680 | None:intergenic | 25.0% |
| !!! | CTTGTTGATTTGTTTTTTTC+AGG | + | chr5_1:31155735-31155754 | Msa0727860:intron | 25.0% |
| ! | TTACAGCATACTCAAAAAAA+GGG | - | chr5_1:31155829-31155848 | None:intergenic | 25.0% |
| ! | ATTACAGCATACTCAAAAAA+AGG | - | chr5_1:31155830-31155849 | None:intergenic | 25.0% |
| !!! | TGCTGTAATTCATGTTTTTA+TGG | + | chr5_1:31155841-31155860 | Msa0727860:intron | 25.0% |
| ! | TCTAAATCTCATCATAACTA+AGG | + | chr5_1:31155984-31156003 | Msa0727860:CDS | 25.0% |
| !!! | GATAATCTTAACTTTTTGAG+GGG | + | chr5_1:31156089-31156108 | Msa0727860:intron | 25.0% |
| !! | CATTTTGGATTACATTAGAA+AGG | + | chr5_1:31156194-31156213 | Msa0727860:CDS | 25.0% |
| ! | TATTTATGGATTTAGTCTCT+TGG | + | chr5_1:31156301-31156320 | Msa0727860:intron | 25.0% |
| ! | TGTTGTTACTATTGAATGTA+GGG | + | chr5_1:31156783-31156802 | Msa0727860:CDS | 25.0% |
| ! | TATTACATCAAGCATATAGA+TGG | + | chr5_1:31157052-31157071 | Msa0727860:CDS | 25.0% |
| ! | ATTACATCAAGCATATAGAT+GGG | + | chr5_1:31157053-31157072 | Msa0727860:CDS | 25.0% |
| ! | TGTTAGTACTTAGTTATGTT+TGG | + | chr5_1:31157167-31157186 | Msa0727860:intron | 25.0% |
| !! | TGTAGCTTTTGTTAAAATCA+CGG | - | chr5_1:31157228-31157247 | None:intergenic | 25.0% |
| ! | TACAAGATAAACAATGAAGA+GGG | - | chr5_1:31157360-31157379 | None:intergenic | 25.0% |
| ! | ATACAAGATAAACAATGAAG+AGG | - | chr5_1:31157361-31157380 | None:intergenic | 25.0% |
| ! | AAAGTAAACTAACAAGATTG+TGG | - | chr5_1:31157548-31157567 | None:intergenic | 25.0% |
| !! | ATTTTATACAAGTGGCAATT+AGG | + | chr5_1:31157664-31157683 | Msa0727860:intron | 25.0% |
| ! | TAACACAATACTCAAAGTAA+AGG | + | chr5_1:31157973-31157992 | Msa0727860:CDS | 25.0% |
| ! | AACACAATACTCAAAGTAAA+GGG | + | chr5_1:31157974-31157993 | Msa0727860:CDS | 25.0% |
| !! | TCTAGATCTTTTGTTAACTT+TGG | + | chr5_1:31158061-31158080 | Msa0727860:CDS | 25.0% |
| !! | ATCTTTTGTTAACTTTGGTT+TGG | + | chr5_1:31158066-31158085 | Msa0727860:CDS | 25.0% |
| ! | TATTGTACAGTTGAAAGATT+TGG | + | chr5_1:31158124-31158143 | Msa0727860:three_prime_UTR | 25.0% |
| ! | TTTCAAAGTTTACACAATCA+AGG | - | chr5_1:31158355-31158374 | None:intergenic | 25.0% |
| ! | TTGTTGTTACAAAGAAACAG+TGG | - | chr5_1:31154705-31154724 | None:intergenic | 30.0% |
| TAGGGTAAAATTTCCTAGAT+TGG | - | chr5_1:31154782-31154801 | None:intergenic | 30.0% | |
| TAAGGATTGATGAAATGGTA+GGG | - | chr5_1:31154800-31154819 | None:intergenic | 30.0% | |
| TTAAGGATTGATGAAATGGT+AGG | - | chr5_1:31154801-31154820 | None:intergenic | 30.0% | |
| CCCATTATAGTTCTTGATTA+AGG | - | chr5_1:31154818-31154837 | None:intergenic | 30.0% | |
| GGTTTGGAAATTTAGATACA+AGG | + | chr5_1:31155023-31155042 | Msa0727860:intron | 30.0% | |
| !!! | TTTTGGCTTTCTTCAATAAG+TGG | + | chr5_1:31155249-31155268 | Msa0727860:intron | 30.0% |
| !!! | AAAGAGGAATATTTTGGCTT+GGG | - | chr5_1:31155339-31155358 | None:intergenic | 30.0% |
| !!! | AAAAGAGGAATATTTTGGCT+TGG | - | chr5_1:31155340-31155359 | None:intergenic | 30.0% |
| ! | GTGTTCTTTTTACTACAACT+TGG | + | chr5_1:31155376-31155395 | Msa0727860:intron | 30.0% |
| !! | AATAGGATAATGATGGGTTA+AGG | - | chr5_1:31155425-31155444 | None:intergenic | 30.0% |
| GAAAAAATTAGTACCTTGGA+GGG | - | chr5_1:31155657-31155676 | None:intergenic | 30.0% | |
| TCAACAAGTAAAAAATGAGG+AGG | - | chr5_1:31155723-31155742 | None:intergenic | 30.0% | |
| TTCAGGGTTGTAATTGATAA+TGG | + | chr5_1:31155752-31155771 | Msa0727860:intron | 30.0% | |
| TCAAAATGCCACTGTTATAA+GGG | + | chr5_1:31155781-31155800 | Msa0727860:CDS | 30.0% | |
| TAAACATACCCTTATAACAG+TGG | - | chr5_1:31155792-31155811 | None:intergenic | 30.0% | |
| TACAGCATACTCAAAAAAAG+GGG | - | chr5_1:31155828-31155847 | None:intergenic | 30.0% | |
| TTTAATGTAACTGACCAAGA+TGG | + | chr5_1:31156150-31156169 | Msa0727860:CDS | 30.0% | |
| CAAACAATGTACATAGTTAG+TGG | - | chr5_1:31156277-31156296 | None:intergenic | 30.0% | |
| ! | ATCAGATGATGTTTGATGAT+AGG | + | chr5_1:31156674-31156693 | Msa0727860:CDS | 30.0% |
| ! | TCAGATGATGTTTGATGATA+GGG | + | chr5_1:31156675-31156694 | Msa0727860:CDS | 30.0% |
| CAGTTAACAACATCAACATT+TGG | - | chr5_1:31156745-31156764 | None:intergenic | 30.0% | |
| CAAATGTTGATGTTGTTAAC+TGG | + | chr5_1:31156743-31156762 | Msa0727860:CDS | 30.0% | |
| CTGTTGTTACTATTGAATGT+AGG | + | chr5_1:31156782-31156801 | Msa0727860:CDS | 30.0% | |
| TTACTATTGAATGTAGGGAT+AGG | + | chr5_1:31156788-31156807 | Msa0727860:CDS | 30.0% | |
| TTTGACAGATATGCAATATG+TGG | + | chr5_1:31156840-31156859 | Msa0727860:CDS | 30.0% | |
| ATATATACCTGATATGCTTG+TGG | - | chr5_1:31156895-31156914 | None:intergenic | 30.0% | |
| TGTACTTTACTGGGTTTATA+AGG | + | chr5_1:31156985-31157004 | Msa0727860:intron | 30.0% | |
| GGTTTATAAGGTGATTTCAT+TGG | + | chr5_1:31156997-31157016 | Msa0727860:intron | 30.0% | |
| ! | TTTCTGCATCTGATTTTACA+GGG | - | chr5_1:31157081-31157100 | None:intergenic | 30.0% |
| GTACTTAGTTATGTTTGGAT+TGG | + | chr5_1:31157172-31157191 | Msa0727860:intron | 30.0% | |
| ! | CAGTAAATTTTGCAGAATCA+CGG | + | chr5_1:31157195-31157214 | Msa0727860:intron | 30.0% |
| TAGTAAATTAAGTGGATGCT+TGG | - | chr5_1:31157316-31157335 | None:intergenic | 30.0% | |
| ACTAATTTATGATTTCCTGC+AGG | + | chr5_1:31157332-31157351 | Msa0727860:intron | 30.0% | |
| CTAATTTATGATTTCCTGCA+GGG | + | chr5_1:31157333-31157352 | Msa0727860:intron | 30.0% | |
| AATCTTGCTAGTTGTGATAA+TGG | + | chr5_1:31157486-31157505 | Msa0727860:intron | 30.0% | |
| TGAACTTAACCACAATTTGT+TGG | + | chr5_1:31157567-31157586 | Msa0727860:intron | 30.0% | |
| CTAAGACAATTGAATCCATT+AGG | + | chr5_1:31157939-31157958 | Msa0727860:CDS | 30.0% | |
| ! | CTAAAGATTGATGATCTTGT+AGG | - | chr5_1:31158028-31158047 | None:intergenic | 30.0% |
| ACAAGATCATCAATCTTTAG+TGG | + | chr5_1:31158028-31158047 | Msa0727860:CDS | 30.0% | |
| AAAGATTTGGAGATGCAAAA+AGG | + | chr5_1:31158137-31158156 | Msa0727860:three_prime_UTR | 30.0% | |
| AAGATTTGGAGATGCAAAAA+GGG | + | chr5_1:31158138-31158157 | Msa0727860:three_prime_UTR | 30.0% | |
| AAAAGTTAAAGCAAGCATGA+GGG | - | chr5_1:31158269-31158288 | None:intergenic | 30.0% | |
| AAAAAGTTAAAGCAAGCATG+AGG | - | chr5_1:31158270-31158289 | None:intergenic | 30.0% | |
| ! | TAGTTTTTCACTAATCACCT+TGG | + | chr5_1:31158290-31158309 | Msa0727860:three_prime_UTR | 30.0% |
| GGAGAATCATTCACACAAAA+GGG | - | chr5_1:31154972-31154991 | None:intergenic | 35.0% | |
| AGGAGAATCATTCACACAAA+AGG | - | chr5_1:31154973-31154992 | None:intergenic | 35.0% | |
| TTTCTCTCTCACTTTCTTTC+TGG | + | chr5_1:31155147-31155166 | Msa0727860:intron | 35.0% | |
| !!! | TCACTTTCTTTCTGGCTTTT+GGG | + | chr5_1:31155155-31155174 | Msa0727860:intron | 35.0% |
| CTATTCTCAGTCTCATTACA+TGG | + | chr5_1:31155597-31155616 | Msa0727860:CDS | 35.0% | |
| GGAAAAAATTAGTACCTTGG+AGG | - | chr5_1:31155658-31155677 | None:intergenic | 35.0% | |
| ! | TATAACAGTGGCATTTTGAG+AGG | - | chr5_1:31155780-31155799 | None:intergenic | 35.0% |
| CTCAAAATGCCACTGTTATA+AGG | + | chr5_1:31155780-31155799 | Msa0727860:CDS | 35.0% | |
| !! | GTTGATAGTGCTAACAAACA+AGG | + | chr5_1:31155928-31155947 | Msa0727860:CDS | 35.0% |
| TGATGAGATTTAGATCAGTG+AGG | - | chr5_1:31155978-31155997 | None:intergenic | 35.0% | |
| AAGGCTTACATTTCTTCTGA+TGG | + | chr5_1:31156003-31156022 | Msa0727860:CDS | 35.0% | |
| ! | GGTAACAGATGAAGTCATTT+TGG | + | chr5_1:31156179-31156198 | Msa0727860:CDS | 35.0% |
| !! | TGTTGGTGTTAAACAAACAC+TGG | + | chr5_1:31156357-31156376 | Msa0727860:CDS | 35.0% |
| ! | TGTTGTTAACTGGTCTGATA+AGG | + | chr5_1:31156753-31156772 | Msa0727860:CDS | 35.0% |
| TCATGCTAATATTGATGCTG+AGG | + | chr5_1:31156867-31156886 | Msa0727860:CDS | 35.0% | |
| CATGCTAATATTGATGCTGA+GGG | + | chr5_1:31156868-31156887 | Msa0727860:CDS | 35.0% | |
| ATGCTAATATTGATGCTGAG+GGG | + | chr5_1:31156869-31156888 | Msa0727860:CDS | 35.0% | |
| ! | TTCTGCATCTGATTTTACAG+GGG | - | chr5_1:31157080-31157099 | None:intergenic | 35.0% |
| ! | CTTTCTGCATCTGATTTTAC+AGG | - | chr5_1:31157082-31157101 | None:intergenic | 35.0% |
| TATTGAGAGAAGAGTTTCTG+AGG | + | chr5_1:31157132-31157151 | Msa0727860:CDS | 35.0% | |
| AACTGCTATTCAACTAACCT+TGG | - | chr5_1:31157513-31157532 | None:intergenic | 35.0% | |
| TTTGTCAAGCCAACAAATTG+TGG | - | chr5_1:31157579-31157598 | None:intergenic | 35.0% | |
| AAGTGGCAATTAGGTATTCT+TGG | + | chr5_1:31157673-31157692 | Msa0727860:intron | 35.0% | |
| TACGTGTTACGTTCGATAAT+AGG | - | chr5_1:31157811-31157830 | None:intergenic | 35.0% | |
| GTTAACACTTTCTATGTTCG+CGG | + | chr5_1:31157893-31157912 | Msa0727860:CDS | 35.0% | |
| GAATCCATTAGGCAAACAAT+TGG | + | chr5_1:31157950-31157969 | Msa0727860:CDS | 35.0% | |
| GTTACCAATTGTTTGCCTAA+TGG | - | chr5_1:31157957-31157976 | None:intergenic | 35.0% | |
| ! | GAAGTGTGACTTTAGTTTCA+GGG | + | chr5_1:31158170-31158189 | Msa0727860:three_prime_UTR | 35.0% |
| !! | TTGACTCTTTAGGAAGTGTT+TGG | + | chr5_1:31158224-31158243 | Msa0727860:three_prime_UTR | 35.0% |
| AAAGTTAAAGCAAGCATGAG+GGG | - | chr5_1:31158268-31158287 | None:intergenic | 35.0% | |
| TCATTTCTCCAACTAACGAT+TGG | - | chr5_1:31158318-31158337 | None:intergenic | 35.0% | |
| ATCGTTAGTTGGAGAAATGA+AGG | + | chr5_1:31158318-31158337 | Msa0727860:three_prime_UTR | 35.0% | |
| TGTCTATATGAGATCCCAGT+GGG | + | chr5_1:31154606-31154625 | Msa0727860:five_prime_UTR | 40.0% | |
| AGAAAGAACCGAACCAATCT+AGG | + | chr5_1:31154766-31154785 | Msa0727860:five_prime_UTR | 40.0% | |
| !!! | CTCACTTTCTTTCTGGCTTT+TGG | + | chr5_1:31155154-31155173 | Msa0727860:intron | 40.0% |
| GCAGAAAGAGAGAGAAAAAG+AGG | - | chr5_1:31155355-31155374 | None:intergenic | 40.0% | |
| !! | TGGCTACAACTTGCTAAACA+AGG | + | chr5_1:31155396-31155415 | Msa0727860:intron | 40.0% |
| TTAGAAGAATGAACCCTCCA+AGG | + | chr5_1:31155641-31155660 | Msa0727860:CDS | 40.0% | |
| GCTTACATTTCTTCTGATGG+TGG | + | chr5_1:31156006-31156025 | Msa0727860:CDS | 40.0% | |
| !! | ACATTTCTTCTGATGGTGGA+TGG | + | chr5_1:31156010-31156029 | Msa0727860:CDS | 40.0% |
| AACTGACCAAGATGGAAACA+AGG | + | chr5_1:31156158-31156177 | Msa0727860:CDS | 40.0% | |
| ! | CTGTTACCTTGTTTCCATCT+TGG | - | chr5_1:31156167-31156186 | None:intergenic | 40.0% |
| AGAAAGGTGAGTGTCTCATT+TGG | + | chr5_1:31156210-31156229 | Msa0727860:intron | 40.0% | |
| TCTCATAGTAGTTGGAAAGC+AGG | - | chr5_1:31156335-31156354 | None:intergenic | 40.0% | |
| CCAACAGATCTCATAGTAGT+TGG | - | chr5_1:31156343-31156362 | None:intergenic | 40.0% | |
| CCAACTACTATGAGATCTGT+TGG | + | chr5_1:31156340-31156359 | Msa0727860:CDS | 40.0% | |
| CACACAGCAATAGAGCTTAT+GGG | + | chr5_1:31156382-31156401 | Msa0727860:CDS | 40.0% | |
| TAGAGCTTATGGGAAGTGAT+AGG | + | chr5_1:31156392-31156411 | Msa0727860:CDS | 40.0% | |
| CGTTCACTATGTTGCATTTG+AGG | - | chr5_1:31156456-31156475 | None:intergenic | 40.0% | |
| CAAATGCAACATAGTGAACG+CGG | + | chr5_1:31156456-31156475 | Msa0727860:CDS | 40.0% | |
| ATTCGACGCATACTGATAGA+AGG | + | chr5_1:31156647-31156666 | Msa0727860:CDS | 40.0% | |
| ! | ACAGTGTCGAAAACAAGCTT+TGG | - | chr5_1:31156814-31156833 | None:intergenic | 40.0% |
| ACAGACTTGTGAGATTCCTT+TGG | + | chr5_1:31156952-31156971 | Msa0727860:intron | 40.0% | |
| TTGCTTGGTCTGTACTTTAC+TGG | + | chr5_1:31156975-31156994 | Msa0727860:intron | 40.0% | |
| TGCTTGGTCTGTACTTTACT+GGG | + | chr5_1:31156976-31156995 | Msa0727860:intron | 40.0% | |
| !! | CTAGTTGTGATAATGGTCCA+AGG | + | chr5_1:31157493-31157512 | Msa0727860:intron | 40.0% |
| AGAATAGCCTCACAGTTACA+AGG | + | chr5_1:31157840-31157859 | Msa0727860:CDS | 40.0% | |
| GAATAGCCTCACAGTTACAA+GGG | + | chr5_1:31157841-31157860 | Msa0727860:CDS | 40.0% | |
| GAATCTTGAGGTACAGATTC+AGG | - | chr5_1:31158004-31158023 | None:intergenic | 40.0% | |
| GATCTTGTAGGAGAATCTTG+AGG | - | chr5_1:31158016-31158035 | None:intergenic | 40.0% | |
| ! | GATGCAAAAAGGGTTAGTAG+AGG | + | chr5_1:31158148-31158167 | Msa0727860:three_prime_UTR | 40.0% |
| ! | GGAAGTGTGACTTTAGTTTC+AGG | + | chr5_1:31158169-31158188 | Msa0727860:three_prime_UTR | 40.0% |
| ! | TGACTTTAGTTTCAGGGAGT+AGG | + | chr5_1:31158176-31158195 | Msa0727860:three_prime_UTR | 40.0% |
| TCTCAGAAGCTTGACTCTTT+AGG | + | chr5_1:31158214-31158233 | Msa0727860:three_prime_UTR | 40.0% | |
| GTGTCTATATGAGATCCCAG+TGG | + | chr5_1:31154605-31154624 | Msa0727860:five_prime_UTR | 45.0% | |
| !! | TTCTGATGGTGGATGGTTCA+TGG | + | chr5_1:31156017-31156036 | Msa0727860:CDS | 45.0% |
| GTAGTTGGAAAGCAGGATTC+AGG | - | chr5_1:31156328-31156347 | None:intergenic | 45.0% | |
| CCATAAGCTCTATTGCTGTG+TGG | - | chr5_1:31156384-31156403 | None:intergenic | 45.0% | |
| CCACACAGCAATAGAGCTTA+TGG | + | chr5_1:31156381-31156400 | Msa0727860:CDS | 45.0% | |
| ! | CTCACTTCTGAAAGCAATCC+TGG | - | chr5_1:31156418-31156437 | None:intergenic | 45.0% |
| ! | CTGCTATAACTGACTCACAG+AGG | + | chr5_1:31156542-31156561 | Msa0727860:CDS | 45.0% |
| ACAGAGGCTTTCGCTAATCA+AGG | + | chr5_1:31156558-31156577 | Msa0727860:CDS | 45.0% | |
| GAGCTTCTGTGTAATGTGCT+TGG | + | chr5_1:31156580-31156599 | Msa0727860:CDS | 45.0% | |
| CTTCTGTGTAATGTGCTTGG+TGG | + | chr5_1:31156583-31156602 | Msa0727860:CDS | 45.0% | |
| GTGAGATTCCTTTGGTTGCT+TGG | + | chr5_1:31156960-31156979 | Msa0727860:intron | 45.0% | |
| AGTACAGACCAAGCAACCAA+AGG | - | chr5_1:31156971-31156990 | None:intergenic | 45.0% | |
| !! | AGAGAAGAGTTTCTGAGGTG+AGG | + | chr5_1:31157137-31157156 | Msa0727860:intron | 45.0% |
| !! | GAGAAGAGTTTCTGAGGTGA+GGG | + | chr5_1:31157138-31157157 | Msa0727860:intron | 45.0% |
| AGGGCAGAAGTAACAACGAA+AGG | + | chr5_1:31157860-31157879 | Msa0727860:CDS | 45.0% | |
| GCAGAAGTAACAACGAAAGG+AGG | + | chr5_1:31157863-31157882 | Msa0727860:CDS | 45.0% | |
| CCAACTAACGATTGGATCCA+AGG | - | chr5_1:31158310-31158329 | None:intergenic | 45.0% | |
| CCTTGGATCCAATCGTTAGT+TGG | + | chr5_1:31158307-31158326 | Msa0727860:three_prime_UTR | 45.0% | |
| !! | ATTAAATATATACATATAAT+AGG | - | chr5_1:31155442-31155461 | None:intergenic | 5.0% |
| !! | GATGGTGGATGGTTCATGGA+TGG | + | chr5_1:31156021-31156040 | Msa0727860:CDS | 50.0% |
| CTTATGGGAAGTGATAGGCC+AGG | + | chr5_1:31156397-31156416 | Msa0727860:CDS | 50.0% | |
| ATGCAACATAGTGAACGCGG+AGG | + | chr5_1:31156459-31156478 | Msa0727860:CDS | 50.0% | |
| ACATAGTGAACGCGGAGGTT+TGG | + | chr5_1:31156464-31156483 | Msa0727860:CDS | 50.0% | |
| AGCAGAACCTGTTTCCTCGT+CGG | - | chr5_1:31156527-31156546 | None:intergenic | 50.0% | |
| ! | CTGTGTAATGTGCTTGGTGG+TGG | + | chr5_1:31156586-31156605 | Msa0727860:CDS | 50.0% |
| !! | ATGTGCTTGGTGGTGGAAAC+AGG | + | chr5_1:31156593-31156612 | Msa0727860:CDS | 50.0% |
| !! | GGTGGTGGAAACAGGAAAAG+AGG | + | chr5_1:31156601-31156620 | Msa0727860:CDS | 50.0% |
| ! | CGATAATAGGCCGACTCTGT+CGG | - | chr5_1:31157798-31157817 | None:intergenic | 50.0% |
| CTTCTGCCCTTGTAACTGTG+AGG | - | chr5_1:31157850-31157869 | None:intergenic | 50.0% | |
| TTCTATGTTCGCGGAGCTTC+TGG | + | chr5_1:31157902-31157921 | Msa0727860:CDS | 50.0% | |
| TGTGATGCATGTGACCGACG+AGG | + | chr5_1:31156510-31156529 | Msa0727860:CDS | 55.0% | |
| CATGTGACCGACGAGGAAAC+AGG | + | chr5_1:31156517-31156536 | Msa0727860:CDS | 55.0% | |
| TGAGGGGCCACAAGCATATC+AGG | + | chr5_1:31156885-31156904 | Msa0727860:CDS | 55.0% | |
| ACAATGAAGAGGGTCCCTGC+AGG | - | chr5_1:31157350-31157369 | None:intergenic | 55.0% | |
| ! | TAATAGGCCGACTCTGTCGG+TGG | - | chr5_1:31157795-31157814 | None:intergenic | 55.0% |
| CTCTGCACCACCGACAGAGT+CGG | + | chr5_1:31157785-31157804 | Msa0727860:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 31154471 | 31158420 | 31154471 | ID=Msa0727860;Name=Msa0727860 |
| chr5_1 | mRNA | 31154471 | 31158420 | 31154471 | ID=Msa0727860-mRNA-1;Parent=Msa0727860;Name=Msa0727860-mRNA-1;_AED=0.10;_eAED=0.10;_QI=362|1|1|1|0.85|0.87|8|315|451 |
| chr5_1 | exon | 31154471 | 31154836 | 31154471 | ID=Msa0727860-mRNA-1:exon:10291;Parent=Msa0727860-mRNA-1 |
| chr5_1 | exon | 31155572 | 31155662 | 31155572 | ID=Msa0727860-mRNA-1:exon:10292;Parent=Msa0727860-mRNA-1 |
| chr5_1 | exon | 31155757 | 31155802 | 31155757 | ID=Msa0727860-mRNA-1:exon:10293;Parent=Msa0727860-mRNA-1 |
| chr5_1 | exon | 31155928 | 31156042 | 31155928 | ID=Msa0727860-mRNA-1:exon:10294;Parent=Msa0727860-mRNA-1 |
| chr5_1 | exon | 31156148 | 31156215 | 31156148 | ID=Msa0727860-mRNA-1:exon:10295;Parent=Msa0727860-mRNA-1 |
| chr5_1 | exon | 31156316 | 31156906 | 31156316 | ID=Msa0727860-mRNA-1:exon:10296;Parent=Msa0727860-mRNA-1 |
| chr5_1 | exon | 31157049 | 31157153 | 31157049 | ID=Msa0727860-mRNA-1:exon:10297;Parent=Msa0727860-mRNA-1 |
| chr5_1 | exon | 31157770 | 31158420 | 31157770 | ID=Msa0727860-mRNA-1:exon:10298;Parent=Msa0727860-mRNA-1 |
| chr5_1 | five_prime_UTR | 31154471 | 31154832 | 31154471 | ID=Msa0727860-mRNA-1:five_prime_utr;Parent=Msa0727860-mRNA-1 |
| chr5_1 | CDS | 31154833 | 31154836 | 31154833 | ID=Msa0727860-mRNA-1:cds;Parent=Msa0727860-mRNA-1 |
| chr5_1 | CDS | 31155572 | 31155662 | 31155572 | ID=Msa0727860-mRNA-1:cds;Parent=Msa0727860-mRNA-1 |
| chr5_1 | CDS | 31155757 | 31155802 | 31155757 | ID=Msa0727860-mRNA-1:cds;Parent=Msa0727860-mRNA-1 |
| chr5_1 | CDS | 31155928 | 31156042 | 31155928 | ID=Msa0727860-mRNA-1:cds;Parent=Msa0727860-mRNA-1 |
| chr5_1 | CDS | 31156148 | 31156215 | 31156148 | ID=Msa0727860-mRNA-1:cds;Parent=Msa0727860-mRNA-1 |
| chr5_1 | CDS | 31156316 | 31156906 | 31156316 | ID=Msa0727860-mRNA-1:cds;Parent=Msa0727860-mRNA-1 |
| chr5_1 | CDS | 31157049 | 31157153 | 31157049 | ID=Msa0727860-mRNA-1:cds;Parent=Msa0727860-mRNA-1 |
| chr5_1 | CDS | 31157770 | 31158105 | 31157770 | ID=Msa0727860-mRNA-1:cds;Parent=Msa0727860-mRNA-1 |
| chr5_1 | three_prime_UTR | 31158106 | 31158420 | 31158106 | ID=Msa0727860-mRNA-1:three_prime_utr;Parent=Msa0727860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
