AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0267510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0267510 MtrunA17_Chr4g0070901 95.855 193 4 1 1 189 1 193 6.86e-139 385
Msa0267510 MtrunA17_Chr4g0003581 29.365 126 82 2 68 188 13 136 4.85e-13 64.3
Msa0267510 MtrunA17_Chr4g0063501 26.772 127 86 3 68 189 9 133 3.78e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0267510 AT5G57040.1 66.497 197 56 4 1 187 1 197 6.26e-91 264
Msa0267510 AT1G80160.1 28.906 128 84 3 66 188 11 136 1.42e-12 63.2

Find 92 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACACTAACATGGTTAAATT+TGG 0.100270 2_2:+69115816 None:intergenic
TAACTATAATAATAATATTA+AGG 0.194899 2_2:-69116269 None:intergenic
AATGATTATGATGAATATTA+AGG 0.220075 2_2:-69113234 Msa0267510:three_prime_UTR
AGAAGTCAAGTGATCTTTCT+AGG 0.233471 2_2:+69115031 None:intergenic
TTTCCTTACTAAATTTCTTT+AGG 0.243956 2_2:-69113184 Msa0267510:three_prime_UTR
TGTTGAGGTCTTCCAGTTAA+AGG 0.262496 2_2:+69114791 None:intergenic
GACTTCTATCAAAACGTTCT+AGG 0.262666 2_2:-69115015 Msa0267510:intron
GGAAAGAAGTAGAAATTTAA+AGG 0.263257 2_2:+69113202 None:intergenic
CCAGTTAAAGGGTCGGGATT+TGG 0.299172 2_2:+69114803 None:intergenic
CCAAATCCCGACCCTTTAAC+TGG 0.341939 2_2:-69114803 Msa0267510:CDS
GCCTTCCAATATTGTCTTGA+GGG 0.345049 2_2:+69113503 None:intergenic
ACACTAACATGGTTAAATTT+GGG 0.349864 2_2:+69115817 None:intergenic
AGACTTATTGATCTGGCGTT+TGG 0.354695 2_2:+69113438 None:intergenic
GGGGTACTTGGTTGTGGGTA+GGG 0.358439 2_2:-69114853 Msa0267510:CDS
ACTGTCTTAACATTCTCATT+TGG 0.371354 2_2:+69113481 None:intergenic
AACTATAATAATAATATTAA+GGG 0.380437 2_2:-69116268 None:intergenic
TAATATTCATCATAATCATT+TGG 0.380482 2_2:+69113237 None:intergenic
GAAAGAAGTAGAAATTTAAA+GGG 0.387627 2_2:+69113203 None:intergenic
GTCTTGAGGGCATTTGCTAC+GGG 0.388134 2_2:+69113516 None:intergenic
CATACAGGGGTACTTGGTTG+TGG 0.393776 2_2:-69114859 Msa0267510:CDS
CCCTACACACTTAGTCGTTC+CGG 0.396329 2_2:-69113739 Msa0267510:CDS
AGCTTCCATACAGGGGTACT+TGG 0.398506 2_2:-69114865 Msa0267510:CDS
GTCTGAGATGATTCACTTGA+TGG 0.399218 2_2:-69114831 Msa0267510:CDS
AAGAACATCATGAGCTCAGC+AGG 0.409206 2_2:-69113130 Msa0267510:three_prime_UTR
GTTGAGGTCTTCCAGTTAAA+GGG 0.414396 2_2:+69114792 None:intergenic
AAATGCCCTCAAGACAATAT+TGG 0.416785 2_2:-69113508 Msa0267510:three_prime_UTR
TCAGCAGGGTGTATCATTTG+TGG 0.416975 2_2:-69113115 Msa0267510:three_prime_UTR
ATTGATCTGGCGTTTGGAAT+GGG 0.426938 2_2:+69113444 None:intergenic
TGTCTTGAGGGCATTTGCTA+CGG 0.432286 2_2:+69113515 None:intergenic
CTCATGATAAGCTTCCATAC+AGG 0.443284 2_2:-69114874 Msa0267510:CDS
CTTTGAGCTTTGAAACATCT+CGG 0.452869 2_2:+69114735 None:intergenic
AACTCTAGAGCATTGGCATC+GGG 0.453503 2_2:+69113691 None:intergenic
TATTGATCTGGCGTTTGGAA+TGG 0.458729 2_2:+69113443 None:intergenic
AATATAGAGCCTTGCTGGCA+TGG 0.461428 2_2:-69113382 Msa0267510:three_prime_UTR
ATGGTGCAGAGGAGAGATAA+AGG 0.468270 2_2:+69116087 None:intergenic
AGGGGTACTTGGTTGTGGGT+AGG 0.472701 2_2:-69114854 Msa0267510:CDS
ATACAGGGGTACTTGGTTGT+GGG 0.474122 2_2:-69114858 Msa0267510:CDS
CACAACCAAGTACCCCTGTA+TGG 0.474951 2_2:+69114860 None:intergenic
AAGGAATACCAGCTTTATCA+AGG 0.477535 2_2:+69114708 None:intergenic
AAAGTACAGAAGGAACAAAA+TGG 0.481527 2_2:+69113326 None:intergenic
AGAAACTAAGCAACTTCGTC+CGG 0.482401 2_2:+69113569 None:intergenic
TTAGTTTCTTTATTACAGAT+AGG 0.483392 2_2:-69113555 Msa0267510:three_prime_UTR
ACTCCTAAAGAAATTTAGTA+AGG 0.492573 2_2:+69113181 None:intergenic
GGTCTTCCAGTTAAAGGGTC+GGG 0.492662 2_2:+69114797 None:intergenic
GGCTCAAGCTCACTGTTGAA+TGG 0.498930 2_2:+69116198 None:intergenic
CCGGAACGACTAAGTGTGTA+GGG 0.499756 2_2:+69113739 None:intergenic
TATCTCTCCTCTGCACCATA+AGG 0.501313 2_2:-69116083 Msa0267510:intron
TGTATTCGCATTATACGTGC+TGG 0.503488 2_2:-69113262 Msa0267510:three_prime_UTR
AAAGCTCAGACAGCTGTTGA+AGG 0.503913 2_2:-69115757 Msa0267510:CDS
TCCACTGAGACTTATTGATC+TGG 0.512397 2_2:+69113431 None:intergenic
GGAAATGTGTGGCCACTGTT+TGG 0.513236 2_2:-69116247 Msa0267510:five_prime_UTR
ATGGCATAAAACAAACAAAC+CGG 0.518443 2_2:-69116168 Msa0267510:five_prime_UTR
AAAGCAATCCTTGATAAAGC+TGG 0.525820 2_2:-69114716 Msa0267510:intron
TATATGAAGTATATATGTAA+AGG 0.533711 2_2:-69113592 Msa0267510:three_prime_UTR
GGCCTTCCAATATTGTCTTG+AGG 0.540635 2_2:+69113502 None:intergenic
TTTATTACAGATAGGAGCCA+TGG 0.552439 2_2:-69113547 Msa0267510:three_prime_UTR
ATATAGAGCCTTGCTGGCAT+GGG 0.554171 2_2:-69113381 Msa0267510:three_prime_UTR
TAGATGAGTTAGTAGTTGCT+TGG 0.556430 2_2:-69116144 Msa0267510:five_prime_UTR
CAACTACTAACTCATCTATC+CGG 0.558789 2_2:+69116149 None:intergenic
TTGTGTGAACTCTAGAGCAT+TGG 0.560534 2_2:+69113684 None:intergenic
GAACTCTAGAGCATTGGCAT+CGG 0.561687 2_2:+69113690 None:intergenic
TCATGATAAGCTTCCATACA+GGG 0.562411 2_2:-69114873 Msa0267510:CDS
GATCAATAAGTCTCAGTGGA+TGG 0.574132 2_2:-69113428 Msa0267510:three_prime_UTR
TCTGGCGTTTGGAATGGGAC+TGG 0.575542 2_2:+69113449 None:intergenic
ATGAGTTAGTAGTTGCTTGG+TGG 0.577497 2_2:-69116141 Msa0267510:five_prime_UTR
TGAGCTTGAGCCATAAGCTA+TGG 0.581714 2_2:-69116187 Msa0267510:five_prime_UTR
AGTTGCTTGGTGGTGTGCCA+TGG 0.581728 2_2:-69116131 Msa0267510:exon
AGGTCTTCCAGTTAAAGGGT+CGG 0.582962 2_2:+69114796 None:intergenic
TGAAGTATATATGTAAAGGC+CGG 0.589516 2_2:-69113588 Msa0267510:three_prime_UTR
AAAGTTGCAGAAAGTAGATG+TGG 0.594415 2_2:+69113303 None:intergenic
AAAATTACCTTATGGTGCAG+AGG 0.608299 2_2:+69116076 None:intergenic
GTTGTTAGTGTTCACCACGT+TGG 0.609271 2_2:-69115069 Msa0267510:CDS
GTAGATGTGGAAAGTACAGA+AGG 0.611646 2_2:+69113316 None:intergenic
GCAATTCACCCATGCCAGCA+AGG 0.613915 2_2:+69113373 None:intergenic
GTCTGAAGATAAATGAAGCA+AGG 0.614060 2_2:-69114898 Msa0267510:CDS
CGATCTCGACCACCATGTTG+AGG 0.616412 2_2:+69114776 None:intergenic
AACAATAAATCACAACAAAG+CGG 0.626922 2_2:-69115724 Msa0267510:intron
GCCCTCAAGACAATATTGGA+AGG 0.628618 2_2:-69113504 Msa0267510:three_prime_UTR
TCTTGAGGGCATTTGCTACG+GGG 0.639840 2_2:+69113517 None:intergenic
TCCGGAACGACTAAGTGTGT+AGG 0.642716 2_2:+69113738 None:intergenic
TGCTACGGGGTTGTACACCA+TGG 0.645668 2_2:+69113530 None:intergenic
CTGTATGGAAGCTTATCATG+AGG 0.667307 2_2:+69114875 None:intergenic
GCCAGATCAATAAGTCTCAG+TGG 0.677914 2_2:-69113432 Msa0267510:three_prime_UTR
AGAACATCATGAGCTCAGCA+GGG 0.685366 2_2:-69113129 Msa0267510:three_prime_UTR
ATAATATTAAGGGAAATGTG+TGG 0.690465 2_2:-69116258 None:intergenic
CATGATAAGCTTCCATACAG+GGG 0.695350 2_2:-69114872 Msa0267510:CDS
AGCAAACAAACACCAAACAG+TGG 0.708967 2_2:+69116235 None:intergenic
TTAACTGGAAGACCTCAACA+TGG 0.719889 2_2:-69114788 Msa0267510:CDS
CGGAACGACTAAGTGTGTAG+GGG 0.721717 2_2:+69113740 None:intergenic
ACTGGAAGACCTCAACATGG+TGG 0.730509 2_2:-69114785 Msa0267510:CDS
GTGAATTGCACACTATAGTG+TGG 0.781145 2_2:-69113359 Msa0267510:three_prime_UTR
TTTCACATAAAATTCCAACG+TGG 0.798314 2_2:+69115055 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCTAATAATAATCATTAAT+AGG - chr2_2:69113386-69113405 Msa0267510:three_prime_UTR 10.0%
!! CATTTATTTAATAAGTATTT+AGG - chr2_2:69113697-69113716 Msa0267510:CDS 10.0%
!! AAAATTTACTAAAAATAGAA+GGG + chr2_2:69113914-69113933 None:intergenic 10.0%
!! TAAAATTTACTAAAAATAGA+AGG + chr2_2:69113915-69113934 None:intergenic 10.0%
!! ATTATAAATTGTTTACAATA+AGG + chr2_2:69114097-69114116 None:intergenic 10.0%
!!! TTTTGCAAAAAAAAAAAAAG+AGG + chr2_2:69114064-69114083 None:intergenic 15.0%
!! TATTGAATTAAATGAAATAC+AGG - chr2_2:69114427-69114446 Msa0267510:intron 15.0%
!! TTAAAATAAGTAGTAAATCT+TGG - chr2_2:69114677-69114696 Msa0267510:intron 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG + chr2_2:69115054-69115073 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG + chr2_2:69115078-69115097 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATT+TGG - chr2_2:69115077-69115096 Msa0267510:CDS 15.0%
!!! ATCACATTATTATTTTAGAA+TGG + chr2_2:69115384-69115403 None:intergenic 15.0%
!! TATATGAAGTATATATGTAA+AGG - chr2_2:69115755-69115774 Msa0267510:CDS 15.0%
!! TAATATTCATCATAATCATT+TGG + chr2_2:69116113-69116132 None:intergenic 15.0%
!! AATGATTATGATGAATATTA+AGG - chr2_2:69116113-69116132 Msa0267510:CDS 15.0%
!! TGAATTACAAAATTACCTTA+TGG + chr2_2:69113282-69113301 None:intergenic 20.0%
!! TTATAAAAATACAGTAGTTG+AGG - chr2_2:69114141-69114160 Msa0267510:intron 20.0%
!!! GCTATTTGTATAATGTTTTT+TGG - chr2_2:69114237-69114256 Msa0267510:intron 20.0%
!!! TTTTGGTATTTTTCAGATTA+TGG - chr2_2:69114254-69114273 Msa0267510:intron 20.0%
!!! TTTGGTATTTTTCAGATTAT+GGG - chr2_2:69114255-69114274 Msa0267510:intron 20.0%
!! TTAATTTAAAGAAGTAGAGA+AGG + chr2_2:69114661-69114680 None:intergenic 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG + chr2_2:69114991-69115010 None:intergenic 20.0%
!! AAACTAACCAATAGTTAATA+AGG - chr2_2:69115068-69115087 Msa0267510:CDS 20.0%
!!! AAGTGTTTTTAATTTCAAGA+GGG + chr2_2:69115307-69115326 None:intergenic 20.0%
!!! AAAGTGTTTTTAATTTCAAG+AGG + chr2_2:69115308-69115327 None:intergenic 20.0%
!!! TTATCTTTGAAATAACTAAC+AGG + chr2_2:69115411-69115430 None:intergenic 20.0%
!! TTAGTTTCTTTATTACAGAT+AGG - chr2_2:69115792-69115811 Msa0267510:CDS 20.0%
!! GAAAGAAGTAGAAATTTAAA+GGG + chr2_2:69116147-69116166 None:intergenic 20.0%
!! TTTCCTTACTAAATTTCTTT+AGG - chr2_2:69116163-69116182 Msa0267510:five_prime_UTR 20.0%
! GGCAAAAATTGATATAAGAT+TGG + chr2_2:69113314-69113333 None:intergenic 25.0%
! ATCATGAATAGATTGATTGA+TGG + chr2_2:69113441-69113460 None:intergenic 25.0%
! ACACTAACATGGTTAAATTT+GGG + chr2_2:69113533-69113552 None:intergenic 25.0%
! TACACTAACATGGTTAAATT+TGG + chr2_2:69113534-69113553 None:intergenic 25.0%
!!! TCTCATTTTTTACACTAACA+TGG + chr2_2:69113544-69113563 None:intergenic 25.0%
! TTAGTGTAAAAAATGAGAGA+TGG - chr2_2:69113546-69113565 Msa0267510:three_prime_UTR 25.0%
! AACAATAAATCACAACAAAG+CGG - chr2_2:69113623-69113642 Msa0267510:three_prime_UTR 25.0%
! AAAGGTGAACGAAAAATAAA+AGG + chr2_2:69113958-69113977 None:intergenic 25.0%
!!! TTTTATTTTTCGTTCACCTT+TGG - chr2_2:69113957-69113976 Msa0267510:intron 25.0%
!!! TTGGTATTTTTCAGATTATG+GGG - chr2_2:69114256-69114275 Msa0267510:intron 25.0%
! ATAAAGTAGCAGATTGAATT+CGG + chr2_2:69114911-69114930 None:intergenic 25.0%
! AATGATTAAGAGAAAGAGAA+TGG + chr2_2:69115111-69115130 None:intergenic 25.0%
!!! CTTTTTCCTATTTTGTTTGT+AGG - chr2_2:69115581-69115600 Msa0267510:intron 25.0%
!! AAATAGACGACTAATGTTTT+TGG - chr2_2:69115684-69115703 Msa0267510:intron 25.0%
! GGAAAGAAGTAGAAATTTAA+AGG + chr2_2:69116148-69116167 None:intergenic 25.0%
! ACTCCTAAAGAAATTTAGTA+AGG + chr2_2:69116169-69116188 None:intergenic 25.0%
!! TTGTTTTATGCCATAGCTTA+TGG + chr2_2:69113173-69113192 None:intergenic 30.0%
ATGGCATAAAACAAACAAAC+CGG - chr2_2:69113179-69113198 Msa0267510:three_prime_UTR 30.0%
TGATATAAGATTGGAGAAGA+TGG + chr2_2:69113305-69113324 None:intergenic 30.0%
ATAAGTATTTAGGCACTCTT+TGG - chr2_2:69113707-69113726 Msa0267510:CDS 30.0%
!!! GTTGTTTTTATAAGCTATCC+AGG - chr2_2:69113814-69113833 Msa0267510:intron 30.0%
!! TTTATTTTCATAAGCTCTCC+TGG + chr2_2:69113835-69113854 None:intergenic 30.0%
AAACATGAGATTGTCTCATA+TGG - chr2_2:69113870-69113889 Msa0267510:intron 30.0%
!! AAAAAAGAGGCATCTATGAT+TGG + chr2_2:69114051-69114070 None:intergenic 30.0%
! AGTCTTCCAATTATTTTCAC+TGG + chr2_2:69114168-69114187 None:intergenic 30.0%
TTTCACATAAAATTCCAACG+TGG + chr2_2:69114295-69114314 None:intergenic 30.0%
CATAAGTTCGTATGACTATT+TGG - chr2_2:69114719-69114738 Msa0267510:CDS 30.0%
! GTAGTGTGCAAAGTATTAAT+TGG + chr2_2:69115029-69115048 None:intergenic 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG + chr2_2:69115159-69115178 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG - chr2_2:69115160-69115179 Msa0267510:intron 30.0%
!! TGTCAGCCTTTAGAATTATA+GGG - chr2_2:69115266-69115285 Msa0267510:intron 30.0%
ATAGATTGATCCCTACAATT+TGG - chr2_2:69115432-69115451 Msa0267510:intron 30.0%
TAGATTGATCCCTACAATTT+GGG - chr2_2:69115433-69115452 Msa0267510:intron 30.0%
ATTTATAAGCCTGCAAATCT+TGG + chr2_2:69115500-69115519 None:intergenic 30.0%
AAGATTTGCAGGCTTATAAA+TGG - chr2_2:69115499-69115518 Msa0267510:intron 30.0%
AGATATTAGAGAATCTCCTT+TGG + chr2_2:69115539-69115558 None:intergenic 30.0%
TGAAGTATATATGTAAAGGC+CGG - chr2_2:69115759-69115778 Msa0267510:CDS 30.0%
ACTGTCTTAACATTCTCATT+TGG + chr2_2:69115869-69115888 None:intergenic 30.0%
AAAGTACAGAAGGAACAAAA+TGG + chr2_2:69116024-69116043 None:intergenic 30.0%
CAACTACTAACTCATCTATC+CGG + chr2_2:69113201-69113220 None:intergenic 35.0%
TAGATGAGTTAGTAGTTGCT+TGG - chr2_2:69113203-69113222 Msa0267510:three_prime_UTR 35.0%
AAAATTACCTTATGGTGCAG+AGG + chr2_2:69113274-69113293 None:intergenic 35.0%
ATGCTCACAAGTTGCTAAAT+CGG - chr2_2:69113361-69113380 Msa0267510:three_prime_UTR 35.0%
AATTCAACTGCAACAGAAGA+AGG + chr2_2:69113496-69113515 None:intergenic 35.0%
TACACTCTACAAAACAGTCT+CGG - chr2_2:69114007-69114026 Msa0267510:intron 35.0%
TGAGGACCAGTGAAAATAAT+TGG - chr2_2:69114159-69114178 Msa0267510:intron 35.0%
AGAAGTCAAGTGATCTTTCT+AGG + chr2_2:69114319-69114338 None:intergenic 35.0%
GACTTCTATCAAAACGTTCT+AGG - chr2_2:69114332-69114351 Msa0267510:intron 35.0%
GTCTGAAGATAAATGAAGCA+AGG - chr2_2:69114449-69114468 Msa0267510:intron 35.0%
TCATGATAAGCTTCCATACA+GGG - chr2_2:69114474-69114493 Msa0267510:intron 35.0%
!! CTTTGAGCTTTGAAACATCT+CGG + chr2_2:69114615-69114634 None:intergenic 35.0%
AAAGCAATCCTTGATAAAGC+TGG - chr2_2:69114631-69114650 Msa0267510:intron 35.0%
! AAGGAATACCAGCTTTATCA+AGG + chr2_2:69114642-69114661 None:intergenic 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + chr2_2:69114961-69114980 None:intergenic 35.0%
! TGTGCAAAGTATTAATTGGC+GGG + chr2_2:69115025-69115044 None:intergenic 35.0%
! GTGTGCAAAGTATTAATTGG+CGG + chr2_2:69115026-69115045 None:intergenic 35.0%
!! GTGTCAGCCTTTAGAATTAT+AGG - chr2_2:69115265-69115284 Msa0267510:intron 35.0%
!! AGCCTTTAGAATTATAGGGA+TGG - chr2_2:69115270-69115289 Msa0267510:intron 35.0%
GTCCATCCCTATAATTCTAA+AGG + chr2_2:69115275-69115294 None:intergenic 35.0%
TCTTGATCACTATAGTACTC+AGG - chr2_2:69115350-69115369 Msa0267510:intron 35.0%
CTTGATCACTATAGTACTCA+GGG - chr2_2:69115351-69115370 Msa0267510:intron 35.0%
! CATTAGTCTCCCAAATTGTA+GGG + chr2_2:69115445-69115464 None:intergenic 35.0%
!! AGTAAAAATTGCTGGTCTTC+CGG + chr2_2:69115630-69115649 None:intergenic 35.0%
TTTATTACAGATAGGAGCCA+TGG - chr2_2:69115800-69115819 Msa0267510:CDS 35.0%
AAATGCCCTCAAGACAATAT+TGG - chr2_2:69115839-69115858 Msa0267510:CDS 35.0%
AGAAAAATATAGAGCCTTGC+TGG - chr2_2:69115960-69115979 Msa0267510:intron 35.0%
AAAGTTGCAGAAAGTAGATG+TGG + chr2_2:69116047-69116066 None:intergenic 35.0%
AGCAAACAAACACCAAACAG+TGG + chr2_2:69113115-69113134 None:intergenic 40.0%
ATGAGTTAGTAGTTGCTTGG+TGG - chr2_2:69113206-69113225 Msa0267510:three_prime_UTR 40.0%
!! TATTTTGAGAAGAGACGCCA+TGG + chr2_2:69113236-69113255 None:intergenic 40.0%
!! TTTTGCCATTTCTACCCTTC+TGG - chr2_2:69113327-69113346 Msa0267510:three_prime_UTR 40.0%
! TTTGCCATTTCTACCCTTCT+GGG - chr2_2:69113328-69113347 Msa0267510:three_prime_UTR 40.0%
AAAACCCAGAAGGGTAGAAA+TGG + chr2_2:69113335-69113354 None:intergenic 40.0%
! ATTTCTACCCTTCTGGGTTT+TGG - chr2_2:69113334-69113353 Msa0267510:three_prime_UTR 40.0%
! TGAGCTTTTACTGTGATGCT+GGG + chr2_2:69113578-69113597 None:intergenic 40.0%
GTTTAGATTCAAAGAGCTGC+AGG + chr2_2:69114362-69114381 None:intergenic 40.0%
CTGTATGGAAGCTTATCATG+AGG + chr2_2:69114475-69114494 None:intergenic 40.0%
CTCATGATAAGCTTCCATAC+AGG - chr2_2:69114473-69114492 Msa0267510:intron 40.0%
CATGATAAGCTTCCATACAG+GGG - chr2_2:69114475-69114494 Msa0267510:intron 40.0%
! GTCTGAGATGATTCACTTGA+TGG - chr2_2:69114516-69114535 Msa0267510:intron 40.0%
GTTGAGGTCTTCCAGTTAAA+GGG + chr2_2:69114558-69114577 None:intergenic 40.0%
TGTTGAGGTCTTCCAGTTAA+AGG + chr2_2:69114559-69114578 None:intergenic 40.0%
TTAACTGGAAGACCTCAACA+TGG - chr2_2:69114559-69114578 Msa0267510:intron 40.0%
AAACGGAGGGAGTAAATAAC+AGG + chr2_2:69114944-69114963 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr2_2:69115164-69115183 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr2_2:69115164-69115183 Msa0267510:intron 40.0%
! GCATTAGTCTCCCAAATTGT+AGG + chr2_2:69115446-69115465 None:intergenic 40.0%
CAATTTGGGAGACTAATGCA+TGG - chr2_2:69115447-69115466 Msa0267510:intron 40.0%
TTTGCAGGCTTATAAATGGC+TGG - chr2_2:69115503-69115522 Msa0267510:intron 40.0%
!!! GGCTGGTTTTGTTTTTCCAA+AGG - chr2_2:69115520-69115539 Msa0267510:intron 40.0%
GGGACACCTACAAACAAAAT+AGG + chr2_2:69115590-69115609 None:intergenic 40.0%
GGATCACGAGTAAAAATTGC+TGG + chr2_2:69115638-69115657 None:intergenic 40.0%
!! TTGTGTGAACTCTAGAGCAT+TGG + chr2_2:69115666-69115685 None:intergenic 40.0%
AGAAACTAAGCAACTTCGTC+CGG + chr2_2:69115781-69115800 None:intergenic 40.0%
GCCTTCCAATATTGTCTTGA+GGG + chr2_2:69115847-69115866 None:intergenic 40.0%
! ATTGATCTGGCGTTTGGAAT+GGG + chr2_2:69115906-69115925 None:intergenic 40.0%
TATTGATCTGGCGTTTGGAA+TGG + chr2_2:69115907-69115926 None:intergenic 40.0%
AGACTTATTGATCTGGCGTT+TGG + chr2_2:69115912-69115931 None:intergenic 40.0%
TCCACTGAGACTTATTGATC+TGG + chr2_2:69115919-69115938 None:intergenic 40.0%
GATCAATAAGTCTCAGTGGA+TGG - chr2_2:69115919-69115938 Msa0267510:intron 40.0%
GTGAATTGCACACTATAGTG+TGG - chr2_2:69115988-69116007 Msa0267510:intron 40.0%
! GTAGATGTGGAAAGTACAGA+AGG + chr2_2:69116034-69116053 None:intergenic 40.0%
TGTATTCGCATTATACGTGC+TGG - chr2_2:69116085-69116104 Msa0267510:CDS 40.0%
TGAGCTTGAGCCATAAGCTA+TGG - chr2_2:69113160-69113179 Msa0267510:three_prime_UTR 45.0%
ATGGTGCAGAGGAGAGATAA+AGG + chr2_2:69113263-69113282 None:intergenic 45.0%
TATCTCTCCTCTGCACCATA+AGG - chr2_2:69113264-69113283 Msa0267510:three_prime_UTR 45.0%
CATGACTCCAAAACCCAGAA+GGG + chr2_2:69113344-69113363 None:intergenic 45.0%
! CTGAGCTTTTACTGTGATGC+TGG + chr2_2:69113579-69113598 None:intergenic 45.0%
AAAGCTCAGACAGCTGTTGA+AGG - chr2_2:69113590-69113609 Msa0267510:three_prime_UTR 45.0%
GAGATTGTCTCATATGGACC+CGG - chr2_2:69113876-69113895 Msa0267510:intron 45.0%
AGAAGGGTTCACCTTTAGAC+CGG + chr2_2:69113898-69113917 None:intergenic 45.0%
ACCTTTGGACCCATTTCTGA+AGG - chr2_2:69113972-69113991 Msa0267510:intron 45.0%
ACCTTCAGAAATGGGTCCAA+AGG + chr2_2:69113976-69113995 None:intergenic 45.0%
CAGTGTGGACCTTCAGAAAT+GGG + chr2_2:69113984-69114003 None:intergenic 45.0%
TTGTAGAGTGTACACCAGTG+TGG + chr2_2:69113999-69114018 None:intergenic 45.0%
GTTGTTAGTGTTCACCACGT+TGG - chr2_2:69114278-69114297 Msa0267510:intron 45.0%
!! ATACAGGGGTACTTGGTTGT+GGG - chr2_2:69114489-69114508 Msa0267510:intron 45.0%
AGGTCTTCCAGTTAAAGGGT+CGG + chr2_2:69114554-69114573 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr2_2:69115163-69115182 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr2_2:69115163-69115182 Msa0267510:intron 45.0%
GACTAATGCATGGCATACCT+CGG - chr2_2:69115457-69115476 Msa0267510:intron 45.0%
ACTAATGCATGGCATACCTC+GGG - chr2_2:69115458-69115477 Msa0267510:intron 45.0%
TGCTTCAGACCAAGATTTGC+AGG - chr2_2:69115488-69115507 Msa0267510:intron 45.0%
!! AACTCTAGAGCATTGGCATC+GGG + chr2_2:69115659-69115678 None:intergenic 45.0%
!! GAACTCTAGAGCATTGGCAT+CGG + chr2_2:69115660-69115679 None:intergenic 45.0%
!! TGTCTTGAGGGCATTTGCTA+CGG + chr2_2:69115835-69115854 None:intergenic 45.0%
GCCCTCAAGACAATATTGGA+AGG - chr2_2:69115843-69115862 Msa0267510:intron 45.0%
GGCCTTCCAATATTGTCTTG+AGG + chr2_2:69115848-69115867 None:intergenic 45.0%
GCCAGATCAATAAGTCTCAG+TGG - chr2_2:69115915-69115934 Msa0267510:intron 45.0%
AATATAGAGCCTTGCTGGCA+TGG - chr2_2:69115965-69115984 Msa0267510:intron 45.0%
ATATAGAGCCTTGCTGGCAT+GGG - chr2_2:69115966-69115985 Msa0267510:intron 45.0%
AAGAACATCATGAGCTCAGC+AGG - chr2_2:69116217-69116236 Msa0267510:five_prime_UTR 45.0%
AGAACATCATGAGCTCAGCA+GGG - chr2_2:69116218-69116237 Msa0267510:five_prime_UTR 45.0%
TCAGCAGGGTGTATCATTTG+TGG - chr2_2:69116232-69116251 Msa0267510:five_prime_UTR 45.0%
GGAAATGTGTGGCCACTGTT+TGG - chr2_2:69113100-69113119 Msa0267510:three_prime_UTR 50.0%
GGCTCAAGCTCACTGTTGAA+TGG + chr2_2:69113152-69113171 None:intergenic 50.0%
GCATGACTCCAAAACCCAGA+AGG + chr2_2:69113345-69113364 None:intergenic 50.0%
CTCATATGGACCCGGTCTAA+AGG - chr2_2:69113884-69113903 Msa0267510:intron 50.0%
GAAGGGTTCACCTTTAGACC+GGG + chr2_2:69113897-69113916 None:intergenic 50.0%
CCAGTGTGGACCTTCAGAAA+TGG + chr2_2:69113985-69114004 None:intergenic 50.0%
! CCATTTCTGAAGGTCCACAC+TGG - chr2_2:69113982-69114001 Msa0267510:intron 50.0%
!! AGCTTCCATACAGGGGTACT+TGG - chr2_2:69114482-69114501 Msa0267510:intron 50.0%
CACAACCAAGTACCCCTGTA+TGG + chr2_2:69114490-69114509 None:intergenic 50.0%
!! CATACAGGGGTACTTGGTTG+TGG - chr2_2:69114488-69114507 Msa0267510:intron 50.0%
CCAGTTAAAGGGTCGGGATT+TGG + chr2_2:69114547-69114566 None:intergenic 50.0%
CCAAATCCCGACCCTTTAAC+TGG - chr2_2:69114544-69114563 Msa0267510:intron 50.0%
GGTCTTCCAGTTAAAGGGTC+GGG + chr2_2:69114553-69114572 None:intergenic 50.0%
ACTGGAAGACCTCAACATGG+TGG - chr2_2:69114562-69114581 Msa0267510:intron 50.0%
CGGAACGACTAAGTGTGTAG+GGG + chr2_2:69115610-69115629 None:intergenic 50.0%
CCGGAACGACTAAGTGTGTA+GGG + chr2_2:69115611-69115630 None:intergenic 50.0%
CCCTACACACTTAGTCGTTC+CGG - chr2_2:69115608-69115627 Msa0267510:intron 50.0%
TCCGGAACGACTAAGTGTGT+AGG + chr2_2:69115612-69115631 None:intergenic 50.0%
!! TCTTGAGGGCATTTGCTACG+GGG + chr2_2:69115833-69115852 None:intergenic 50.0%
!! GTCTTGAGGGCATTTGCTAC+GGG + chr2_2:69115834-69115853 None:intergenic 50.0%
!! AGTTGCTTGGTGGTGTGCCA+TGG - chr2_2:69113216-69113235 Msa0267510:three_prime_UTR 55.0%
!! AGGGGTACTTGGTTGTGGGT+AGG - chr2_2:69114493-69114512 Msa0267510:intron 55.0%
! GGGGTACTTGGTTGTGGGTA+GGG - chr2_2:69114494-69114513 Msa0267510:intron 55.0%
CGATCTCGACCACCATGTTG+AGG + chr2_2:69114574-69114593 None:intergenic 55.0%
CATGGCATACCTCGGGATTG+TGG - chr2_2:69115465-69115484 Msa0267510:intron 55.0%
! TCTGAAGCACCACAATCCCG+AGG + chr2_2:69115477-69115496 None:intergenic 55.0%
TGCTACGGGGTTGTACACCA+TGG + chr2_2:69115820-69115839 None:intergenic 55.0%
! TCTGGCGTTTGGAATGGGAC+TGG + chr2_2:69115901-69115920 None:intergenic 55.0%
GCAATTCACCCATGCCAGCA+AGG + chr2_2:69115977-69115996 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 69113093 69116276 69113093 ID=Msa0267510;Name=Msa0267510
chr2_2 mRNA 69113093 69116276 69113093 ID=Msa0267510-mRNA-1;Parent=Msa0267510;Name=Msa0267510-mRNA-1;_AED=0.01;_eAED=0.01;_QI=142|1|1|1|1|1|5|579|189
chr2_2 exon 69113093 69113766 69113093 ID=Msa0267510-mRNA-1:exon:22027;Parent=Msa0267510-mRNA-1
chr2_2 exon 69114717 69114920 69114717 ID=Msa0267510-mRNA-1:exon:22026;Parent=Msa0267510-mRNA-1
chr2_2 exon 69115016 69115099 69115016 ID=Msa0267510-mRNA-1:exon:22025;Parent=Msa0267510-mRNA-1
chr2_2 exon 69115725 69115860 69115725 ID=Msa0267510-mRNA-1:exon:22024;Parent=Msa0267510-mRNA-1
chr2_2 exon 69116084 69116276 69116084 ID=Msa0267510-mRNA-1:exon:22023;Parent=Msa0267510-mRNA-1
chr2_2 five_prime_UTR 69116135 69116276 69116135 ID=Msa0267510-mRNA-1:five_prime_utr;Parent=Msa0267510-mRNA-1
chr2_2 CDS 69116084 69116134 69116084 ID=Msa0267510-mRNA-1:cds;Parent=Msa0267510-mRNA-1
chr2_2 CDS 69115725 69115860 69115725 ID=Msa0267510-mRNA-1:cds;Parent=Msa0267510-mRNA-1
chr2_2 CDS 69115016 69115099 69115016 ID=Msa0267510-mRNA-1:cds;Parent=Msa0267510-mRNA-1
chr2_2 CDS 69114717 69114920 69114717 ID=Msa0267510-mRNA-1:cds;Parent=Msa0267510-mRNA-1
chr2_2 CDS 69113672 69113766 69113672 ID=Msa0267510-mRNA-1:cds;Parent=Msa0267510-mRNA-1
chr2_2 three_prime_UTR 69113093 69113671 69113093 ID=Msa0267510-mRNA-1:three_prime_utr;Parent=Msa0267510-mRNA-1
Gene Sequence

>Msa0267510

ATGGCGTCTCTTCTCAAAATATCTTCCTTTATCTCTCCTCTGCACCATAAGTTGAATTATGTCAGTTTTTCTCCCAAATTTAACCATGTTAGTGTAAAAAATGAGAGATGGAATGCTCCCAGCATCACAGTAAAAGCTCAGACAGCTGTTGAAGGTGATGTAATTAACAATAAATCACAACAAAGCGATTATGGGGTTGTTAGTGTTCACCACGTTGGAATTTTATGTGAAAACCTAGAAAGATCACTTGACTTCTATCAAAACGTTCTAGGTCTGAAGATAAATGAAGCAAGGCCTCATGATAAGCTTCCATACAGGGGTACTTGGTTGTGGGTAGGGTCTGAGATGATTCACTTGATGGAACTTCCAAATCCCGACCCTTTAACTGGAAGACCTCAACATGGTGGTCGAGATCGTCACACTTGTATTGCAATCCGAGATGTTTCAAAGCTCAAAGCAATCCTTGATAAAGCTGGTGTCCCCTACACACTTAGTCGTTCCGGAAGACCAGCAATTTTTACTCGTGATCCCGATGCCAATGCTCTAGAGTTCACACAAATAGACGACTAA

Protein sequence

>Msa0267510

MASLLKISSFISPLHHKLNYVSFSPKFNHVSVKNERWNAPSITVKAQTAVEGDVINNKSQQSDYGVVSVHHVGILCENLERSLDFYQNVLGLKINEARPHDKLPYRGTWLWVGSEMIHLMELPNPDPLTGRPQHGGRDRHTCIAIRDVSKLKAILDKAGVPYTLSRSGRPAIFTRDPDANALEFTQIDD*