AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0267450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0267450 MtrunA17_Chr4g0070901 95.855 193 4 1 1 189 1 193 6.86e-139 385
Msa0267450 MtrunA17_Chr4g0003581 29.365 126 82 2 68 188 13 136 4.85e-13 64.3
Msa0267450 MtrunA17_Chr4g0063501 26.772 127 86 3 68 189 9 133 3.78e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0267450 AT5G57040.1 66.497 197 56 4 1 187 1 197 6.26e-91 264
Msa0267450 AT1G80160.1 28.906 128 84 3 66 188 11 136 1.42e-12 63.2

Find 92 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACACTAACATGGTTAAATT+TGG 0.100270 2_2:+69054682 None:intergenic
TAACTATAATAATAATATTA+AGG 0.194899 2_2:-69055135 None:intergenic
AATGATTATGATGAATATTA+AGG 0.220075 2_2:-69052100 Msa0267450:three_prime_UTR
AGAAGTCAAGTGATCTTTCT+AGG 0.233471 2_2:+69053897 None:intergenic
TTTCCTTACTAAATTTCTTT+AGG 0.243956 2_2:-69052050 Msa0267450:three_prime_UTR
TGTTGAGGTCTTCCAGTTAA+AGG 0.262496 2_2:+69053657 None:intergenic
GACTTCTATCAAAACGTTCT+AGG 0.262666 2_2:-69053881 Msa0267450:intron
GGAAAGAAGTAGAAATTTAA+AGG 0.263257 2_2:+69052068 None:intergenic
CCAGTTAAAGGGTCGGGATT+TGG 0.299172 2_2:+69053669 None:intergenic
CCAAATCCCGACCCTTTAAC+TGG 0.341939 2_2:-69053669 Msa0267450:CDS
GCCTTCCAATATTGTCTTGA+GGG 0.345049 2_2:+69052369 None:intergenic
ACACTAACATGGTTAAATTT+GGG 0.349864 2_2:+69054683 None:intergenic
AGACTTATTGATCTGGCGTT+TGG 0.354695 2_2:+69052304 None:intergenic
GGGGTACTTGGTTGTGGGTA+GGG 0.358439 2_2:-69053719 Msa0267450:CDS
ACTGTCTTAACATTCTCATT+TGG 0.371354 2_2:+69052347 None:intergenic
AACTATAATAATAATATTAA+GGG 0.380437 2_2:-69055134 None:intergenic
TAATATTCATCATAATCATT+TGG 0.380482 2_2:+69052103 None:intergenic
GAAAGAAGTAGAAATTTAAA+GGG 0.387627 2_2:+69052069 None:intergenic
GTCTTGAGGGCATTTGCTAC+GGG 0.388134 2_2:+69052382 None:intergenic
CATACAGGGGTACTTGGTTG+TGG 0.393776 2_2:-69053725 Msa0267450:CDS
CCCTACACACTTAGTCGTTC+CGG 0.396329 2_2:-69052605 Msa0267450:CDS
AGCTTCCATACAGGGGTACT+TGG 0.398506 2_2:-69053731 Msa0267450:CDS
GTCTGAGATGATTCACTTGA+TGG 0.399218 2_2:-69053697 Msa0267450:CDS
AAGAACATCATGAGCTCAGC+AGG 0.409206 2_2:-69051996 Msa0267450:three_prime_UTR
GTTGAGGTCTTCCAGTTAAA+GGG 0.414396 2_2:+69053658 None:intergenic
AAATGCCCTCAAGACAATAT+TGG 0.416785 2_2:-69052374 Msa0267450:three_prime_UTR
TCAGCAGGGTGTATCATTTG+TGG 0.416975 2_2:-69051981 Msa0267450:three_prime_UTR
ATTGATCTGGCGTTTGGAAT+GGG 0.426938 2_2:+69052310 None:intergenic
TGTCTTGAGGGCATTTGCTA+CGG 0.432286 2_2:+69052381 None:intergenic
CTCATGATAAGCTTCCATAC+AGG 0.443284 2_2:-69053740 Msa0267450:CDS
CTTTGAGCTTTGAAACATCT+CGG 0.452869 2_2:+69053601 None:intergenic
AACTCTAGAGCATTGGCATC+GGG 0.453503 2_2:+69052557 None:intergenic
TATTGATCTGGCGTTTGGAA+TGG 0.458729 2_2:+69052309 None:intergenic
AATATAGAGCCTTGCTGGCA+TGG 0.461428 2_2:-69052248 Msa0267450:three_prime_UTR
ATGGTGCAGAGGAGAGATAA+AGG 0.468270 2_2:+69054953 None:intergenic
AGGGGTACTTGGTTGTGGGT+AGG 0.472701 2_2:-69053720 Msa0267450:CDS
ATACAGGGGTACTTGGTTGT+GGG 0.474122 2_2:-69053724 Msa0267450:CDS
CACAACCAAGTACCCCTGTA+TGG 0.474951 2_2:+69053726 None:intergenic
AAGGAATACCAGCTTTATCA+AGG 0.477535 2_2:+69053574 None:intergenic
AAAGTACAGAAGGAACAAAA+TGG 0.481527 2_2:+69052192 None:intergenic
AGAAACTAAGCAACTTCGTC+CGG 0.482401 2_2:+69052435 None:intergenic
TTAGTTTCTTTATTACAGAT+AGG 0.483392 2_2:-69052421 Msa0267450:three_prime_UTR
ACTCCTAAAGAAATTTAGTA+AGG 0.492573 2_2:+69052047 None:intergenic
GGTCTTCCAGTTAAAGGGTC+GGG 0.492662 2_2:+69053663 None:intergenic
GGCTCAAGCTCACTGTTGAA+TGG 0.498930 2_2:+69055064 None:intergenic
CCGGAACGACTAAGTGTGTA+GGG 0.499756 2_2:+69052605 None:intergenic
TATCTCTCCTCTGCACCATA+AGG 0.501313 2_2:-69054949 Msa0267450:intron
TGTATTCGCATTATACGTGC+TGG 0.503488 2_2:-69052128 Msa0267450:three_prime_UTR
AAAGCTCAGACAGCTGTTGA+AGG 0.503913 2_2:-69054623 Msa0267450:CDS
TCCACTGAGACTTATTGATC+TGG 0.512397 2_2:+69052297 None:intergenic
GGAAATGTGTGGCCACTGTT+TGG 0.513236 2_2:-69055113 Msa0267450:five_prime_UTR
ATGGCATAAAACAAACAAAC+CGG 0.518443 2_2:-69055034 Msa0267450:five_prime_UTR
AAAGCAATCCTTGATAAAGC+TGG 0.525820 2_2:-69053582 Msa0267450:intron
TATATGAAGTATATATGTAA+AGG 0.533711 2_2:-69052458 Msa0267450:three_prime_UTR
GGCCTTCCAATATTGTCTTG+AGG 0.540635 2_2:+69052368 None:intergenic
TTTATTACAGATAGGAGCCA+TGG 0.552439 2_2:-69052413 Msa0267450:three_prime_UTR
ATATAGAGCCTTGCTGGCAT+GGG 0.554171 2_2:-69052247 Msa0267450:three_prime_UTR
TAGATGAGTTAGTAGTTGCT+TGG 0.556430 2_2:-69055010 Msa0267450:five_prime_UTR
CAACTACTAACTCATCTATC+CGG 0.558789 2_2:+69055015 None:intergenic
TTGTGTGAACTCTAGAGCAT+TGG 0.560534 2_2:+69052550 None:intergenic
GAACTCTAGAGCATTGGCAT+CGG 0.561687 2_2:+69052556 None:intergenic
TCATGATAAGCTTCCATACA+GGG 0.562411 2_2:-69053739 Msa0267450:CDS
GATCAATAAGTCTCAGTGGA+TGG 0.574132 2_2:-69052294 Msa0267450:three_prime_UTR
TCTGGCGTTTGGAATGGGAC+TGG 0.575542 2_2:+69052315 None:intergenic
ATGAGTTAGTAGTTGCTTGG+TGG 0.577497 2_2:-69055007 Msa0267450:five_prime_UTR
TGAGCTTGAGCCATAAGCTA+TGG 0.581714 2_2:-69055053 Msa0267450:five_prime_UTR
AGTTGCTTGGTGGTGTGCCA+TGG 0.581728 2_2:-69054997 Msa0267450:exon
AGGTCTTCCAGTTAAAGGGT+CGG 0.582962 2_2:+69053662 None:intergenic
TGAAGTATATATGTAAAGGC+CGG 0.589516 2_2:-69052454 Msa0267450:three_prime_UTR
AAAGTTGCAGAAAGTAGATG+TGG 0.594415 2_2:+69052169 None:intergenic
AAAATTACCTTATGGTGCAG+AGG 0.608299 2_2:+69054942 None:intergenic
GTTGTTAGTGTTCACCACGT+TGG 0.609271 2_2:-69053935 Msa0267450:CDS
GTAGATGTGGAAAGTACAGA+AGG 0.611646 2_2:+69052182 None:intergenic
GCAATTCACCCATGCCAGCA+AGG 0.613915 2_2:+69052239 None:intergenic
GTCTGAAGATAAATGAAGCA+AGG 0.614060 2_2:-69053764 Msa0267450:CDS
CGATCTCGACCACCATGTTG+AGG 0.616412 2_2:+69053642 None:intergenic
AACAATAAATCACAACAAAG+CGG 0.626922 2_2:-69054590 Msa0267450:intron
GCCCTCAAGACAATATTGGA+AGG 0.628618 2_2:-69052370 Msa0267450:three_prime_UTR
TCTTGAGGGCATTTGCTACG+GGG 0.639840 2_2:+69052383 None:intergenic
TCCGGAACGACTAAGTGTGT+AGG 0.642716 2_2:+69052604 None:intergenic
TGCTACGGGGTTGTACACCA+TGG 0.645668 2_2:+69052396 None:intergenic
CTGTATGGAAGCTTATCATG+AGG 0.667307 2_2:+69053741 None:intergenic
GCCAGATCAATAAGTCTCAG+TGG 0.677914 2_2:-69052298 Msa0267450:three_prime_UTR
AGAACATCATGAGCTCAGCA+GGG 0.685366 2_2:-69051995 Msa0267450:three_prime_UTR
ATAATATTAAGGGAAATGTG+TGG 0.690465 2_2:-69055124 None:intergenic
CATGATAAGCTTCCATACAG+GGG 0.695350 2_2:-69053738 Msa0267450:CDS
AGCAAACAAACACCAAACAG+TGG 0.708967 2_2:+69055101 None:intergenic
TTAACTGGAAGACCTCAACA+TGG 0.719889 2_2:-69053654 Msa0267450:CDS
CGGAACGACTAAGTGTGTAG+GGG 0.721717 2_2:+69052606 None:intergenic
ACTGGAAGACCTCAACATGG+TGG 0.730509 2_2:-69053651 Msa0267450:CDS
GTGAATTGCACACTATAGTG+TGG 0.781145 2_2:-69052225 Msa0267450:three_prime_UTR
TTTCACATAAAATTCCAACG+TGG 0.798314 2_2:+69053921 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCTAATAATAATCATTAAT+AGG - chr2_2:69052252-69052271 Msa0267450:three_prime_UTR 10.0%
!! CATTTATTTAATAAGTATTT+AGG - chr2_2:69052563-69052582 Msa0267450:CDS 10.0%
!! AAAATTTACTAAAAATAGAA+GGG + chr2_2:69052780-69052799 None:intergenic 10.0%
!! TAAAATTTACTAAAAATAGA+AGG + chr2_2:69052781-69052800 None:intergenic 10.0%
!! ATTATAAATTGTTTACAATA+AGG + chr2_2:69052963-69052982 None:intergenic 10.0%
!!! TTTTGCAAAAAAAAAAAAAG+AGG + chr2_2:69052930-69052949 None:intergenic 15.0%
!! TATTGAATTAAATGAAATAC+AGG - chr2_2:69053293-69053312 Msa0267450:intron 15.0%
!! TTAAAATAAGTAGTAAATCT+TGG - chr2_2:69053543-69053562 Msa0267450:intron 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG + chr2_2:69053920-69053939 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG + chr2_2:69053944-69053963 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATT+TGG - chr2_2:69053943-69053962 Msa0267450:CDS 15.0%
!!! ATCACATTATTATTTTAGAA+TGG + chr2_2:69054250-69054269 None:intergenic 15.0%
!! TATATGAAGTATATATGTAA+AGG - chr2_2:69054621-69054640 Msa0267450:CDS 15.0%
!! TAATATTCATCATAATCATT+TGG + chr2_2:69054979-69054998 None:intergenic 15.0%
!! AATGATTATGATGAATATTA+AGG - chr2_2:69054979-69054998 Msa0267450:CDS 15.0%
!! TGAATTACAAAATTACCTTA+TGG + chr2_2:69052148-69052167 None:intergenic 20.0%
!! TTATAAAAATACAGTAGTTG+AGG - chr2_2:69053007-69053026 Msa0267450:intron 20.0%
!!! GCTATTTGTATAATGTTTTT+TGG - chr2_2:69053103-69053122 Msa0267450:intron 20.0%
!!! TTTTGGTATTTTTCAGATTA+TGG - chr2_2:69053120-69053139 Msa0267450:intron 20.0%
!!! TTTGGTATTTTTCAGATTAT+GGG - chr2_2:69053121-69053140 Msa0267450:intron 20.0%
!! TTAATTTAAAGAAGTAGAGA+AGG + chr2_2:69053527-69053546 None:intergenic 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG + chr2_2:69053857-69053876 None:intergenic 20.0%
!! AAACTAACCAATAGTTAATA+AGG - chr2_2:69053934-69053953 Msa0267450:CDS 20.0%
!!! AAGTGTTTTTAATTTCAAGA+GGG + chr2_2:69054173-69054192 None:intergenic 20.0%
!!! AAAGTGTTTTTAATTTCAAG+AGG + chr2_2:69054174-69054193 None:intergenic 20.0%
!!! TTATCTTTGAAATAACTAAC+AGG + chr2_2:69054277-69054296 None:intergenic 20.0%
!! TTAGTTTCTTTATTACAGAT+AGG - chr2_2:69054658-69054677 Msa0267450:CDS 20.0%
!! GAAAGAAGTAGAAATTTAAA+GGG + chr2_2:69055013-69055032 None:intergenic 20.0%
!! TTTCCTTACTAAATTTCTTT+AGG - chr2_2:69055029-69055048 Msa0267450:five_prime_UTR 20.0%
! GGCAAAAATTGATATAAGAT+TGG + chr2_2:69052180-69052199 None:intergenic 25.0%
! ATCATGAATAGATTGATTGA+TGG + chr2_2:69052307-69052326 None:intergenic 25.0%
! ACACTAACATGGTTAAATTT+GGG + chr2_2:69052399-69052418 None:intergenic 25.0%
! TACACTAACATGGTTAAATT+TGG + chr2_2:69052400-69052419 None:intergenic 25.0%
!!! TCTCATTTTTTACACTAACA+TGG + chr2_2:69052410-69052429 None:intergenic 25.0%
! TTAGTGTAAAAAATGAGAGA+TGG - chr2_2:69052412-69052431 Msa0267450:three_prime_UTR 25.0%
! AACAATAAATCACAACAAAG+CGG - chr2_2:69052489-69052508 Msa0267450:three_prime_UTR 25.0%
! AAAGGTGAACGAAAAATAAA+AGG + chr2_2:69052824-69052843 None:intergenic 25.0%
!!! TTTTATTTTTCGTTCACCTT+TGG - chr2_2:69052823-69052842 Msa0267450:intron 25.0%
!!! TTGGTATTTTTCAGATTATG+GGG - chr2_2:69053122-69053141 Msa0267450:intron 25.0%
! ATAAAGTAGCAGATTGAATT+CGG + chr2_2:69053777-69053796 None:intergenic 25.0%
! AATGATTAAGAGAAAGAGAA+TGG + chr2_2:69053977-69053996 None:intergenic 25.0%
!!! CTTTTTCCTATTTTGTTTGT+AGG - chr2_2:69054447-69054466 Msa0267450:intron 25.0%
!! AAATAGACGACTAATGTTTT+TGG - chr2_2:69054550-69054569 Msa0267450:intron 25.0%
! GGAAAGAAGTAGAAATTTAA+AGG + chr2_2:69055014-69055033 None:intergenic 25.0%
! ACTCCTAAAGAAATTTAGTA+AGG + chr2_2:69055035-69055054 None:intergenic 25.0%
!! TTGTTTTATGCCATAGCTTA+TGG + chr2_2:69052039-69052058 None:intergenic 30.0%
ATGGCATAAAACAAACAAAC+CGG - chr2_2:69052045-69052064 Msa0267450:three_prime_UTR 30.0%
TGATATAAGATTGGAGAAGA+TGG + chr2_2:69052171-69052190 None:intergenic 30.0%
ATAAGTATTTAGGCACTCTT+TGG - chr2_2:69052573-69052592 Msa0267450:CDS 30.0%
!!! GTTGTTTTTATAAGCTATCC+AGG - chr2_2:69052680-69052699 Msa0267450:intron 30.0%
!! TTTATTTTCATAAGCTCTCC+TGG + chr2_2:69052701-69052720 None:intergenic 30.0%
AAACATGAGATTGTCTCATA+TGG - chr2_2:69052736-69052755 Msa0267450:intron 30.0%
!! AAAAAAGAGGCATCTATGAT+TGG + chr2_2:69052917-69052936 None:intergenic 30.0%
! AGTCTTCCAATTATTTTCAC+TGG + chr2_2:69053034-69053053 None:intergenic 30.0%
TTTCACATAAAATTCCAACG+TGG + chr2_2:69053161-69053180 None:intergenic 30.0%
CATAAGTTCGTATGACTATT+TGG - chr2_2:69053585-69053604 Msa0267450:CDS 30.0%
! GTAGTGTGCAAAGTATTAAT+TGG + chr2_2:69053895-69053914 None:intergenic 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG + chr2_2:69054025-69054044 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG - chr2_2:69054026-69054045 Msa0267450:intron 30.0%
!! TGTCAGCCTTTAGAATTATA+GGG - chr2_2:69054132-69054151 Msa0267450:intron 30.0%
ATAGATTGATCCCTACAATT+TGG - chr2_2:69054298-69054317 Msa0267450:intron 30.0%
TAGATTGATCCCTACAATTT+GGG - chr2_2:69054299-69054318 Msa0267450:intron 30.0%
ATTTATAAGCCTGCAAATCT+TGG + chr2_2:69054366-69054385 None:intergenic 30.0%
AAGATTTGCAGGCTTATAAA+TGG - chr2_2:69054365-69054384 Msa0267450:intron 30.0%
AGATATTAGAGAATCTCCTT+TGG + chr2_2:69054405-69054424 None:intergenic 30.0%
TGAAGTATATATGTAAAGGC+CGG - chr2_2:69054625-69054644 Msa0267450:CDS 30.0%
ACTGTCTTAACATTCTCATT+TGG + chr2_2:69054735-69054754 None:intergenic 30.0%
AAAGTACAGAAGGAACAAAA+TGG + chr2_2:69054890-69054909 None:intergenic 30.0%
CAACTACTAACTCATCTATC+CGG + chr2_2:69052067-69052086 None:intergenic 35.0%
TAGATGAGTTAGTAGTTGCT+TGG - chr2_2:69052069-69052088 Msa0267450:three_prime_UTR 35.0%
AAAATTACCTTATGGTGCAG+AGG + chr2_2:69052140-69052159 None:intergenic 35.0%
ATGCTCACAAGTTGCTAAAT+CGG - chr2_2:69052227-69052246 Msa0267450:three_prime_UTR 35.0%
AATTCAACTGCAACAGAAGA+AGG + chr2_2:69052362-69052381 None:intergenic 35.0%
TACACTCTACAAAACAGTCT+CGG - chr2_2:69052873-69052892 Msa0267450:intron 35.0%
TGAGGACCAGTGAAAATAAT+TGG - chr2_2:69053025-69053044 Msa0267450:intron 35.0%
AGAAGTCAAGTGATCTTTCT+AGG + chr2_2:69053185-69053204 None:intergenic 35.0%
GACTTCTATCAAAACGTTCT+AGG - chr2_2:69053198-69053217 Msa0267450:intron 35.0%
GTCTGAAGATAAATGAAGCA+AGG - chr2_2:69053315-69053334 Msa0267450:intron 35.0%
TCATGATAAGCTTCCATACA+GGG - chr2_2:69053340-69053359 Msa0267450:intron 35.0%
!! CTTTGAGCTTTGAAACATCT+CGG + chr2_2:69053481-69053500 None:intergenic 35.0%
AAAGCAATCCTTGATAAAGC+TGG - chr2_2:69053497-69053516 Msa0267450:intron 35.0%
! AAGGAATACCAGCTTTATCA+AGG + chr2_2:69053508-69053527 None:intergenic 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + chr2_2:69053827-69053846 None:intergenic 35.0%
! TGTGCAAAGTATTAATTGGC+GGG + chr2_2:69053891-69053910 None:intergenic 35.0%
! GTGTGCAAAGTATTAATTGG+CGG + chr2_2:69053892-69053911 None:intergenic 35.0%
!! GTGTCAGCCTTTAGAATTAT+AGG - chr2_2:69054131-69054150 Msa0267450:intron 35.0%
!! AGCCTTTAGAATTATAGGGA+TGG - chr2_2:69054136-69054155 Msa0267450:intron 35.0%
GTCCATCCCTATAATTCTAA+AGG + chr2_2:69054141-69054160 None:intergenic 35.0%
TCTTGATCACTATAGTACTC+AGG - chr2_2:69054216-69054235 Msa0267450:intron 35.0%
CTTGATCACTATAGTACTCA+GGG - chr2_2:69054217-69054236 Msa0267450:intron 35.0%
! CATTAGTCTCCCAAATTGTA+GGG + chr2_2:69054311-69054330 None:intergenic 35.0%
!! AGTAAAAATTGCTGGTCTTC+CGG + chr2_2:69054496-69054515 None:intergenic 35.0%
TTTATTACAGATAGGAGCCA+TGG - chr2_2:69054666-69054685 Msa0267450:CDS 35.0%
AAATGCCCTCAAGACAATAT+TGG - chr2_2:69054705-69054724 Msa0267450:CDS 35.0%
AGAAAAATATAGAGCCTTGC+TGG - chr2_2:69054826-69054845 Msa0267450:intron 35.0%
AAAGTTGCAGAAAGTAGATG+TGG + chr2_2:69054913-69054932 None:intergenic 35.0%
AGCAAACAAACACCAAACAG+TGG + chr2_2:69051981-69052000 None:intergenic 40.0%
ATGAGTTAGTAGTTGCTTGG+TGG - chr2_2:69052072-69052091 Msa0267450:three_prime_UTR 40.0%
!! TATTTTGAGAAGAGACGCCA+TGG + chr2_2:69052102-69052121 None:intergenic 40.0%
!! TTTTGCCATTTCTACCCTTC+TGG - chr2_2:69052193-69052212 Msa0267450:three_prime_UTR 40.0%
! TTTGCCATTTCTACCCTTCT+GGG - chr2_2:69052194-69052213 Msa0267450:three_prime_UTR 40.0%
AAAACCCAGAAGGGTAGAAA+TGG + chr2_2:69052201-69052220 None:intergenic 40.0%
! ATTTCTACCCTTCTGGGTTT+TGG - chr2_2:69052200-69052219 Msa0267450:three_prime_UTR 40.0%
! TGAGCTTTTACTGTGATGCT+GGG + chr2_2:69052444-69052463 None:intergenic 40.0%
GTTTAGATTCAAAGAGCTGC+AGG + chr2_2:69053228-69053247 None:intergenic 40.0%
CTGTATGGAAGCTTATCATG+AGG + chr2_2:69053341-69053360 None:intergenic 40.0%
CTCATGATAAGCTTCCATAC+AGG - chr2_2:69053339-69053358 Msa0267450:intron 40.0%
CATGATAAGCTTCCATACAG+GGG - chr2_2:69053341-69053360 Msa0267450:intron 40.0%
! GTCTGAGATGATTCACTTGA+TGG - chr2_2:69053382-69053401 Msa0267450:intron 40.0%
GTTGAGGTCTTCCAGTTAAA+GGG + chr2_2:69053424-69053443 None:intergenic 40.0%
TGTTGAGGTCTTCCAGTTAA+AGG + chr2_2:69053425-69053444 None:intergenic 40.0%
TTAACTGGAAGACCTCAACA+TGG - chr2_2:69053425-69053444 Msa0267450:intron 40.0%
AAACGGAGGGAGTAAATAAC+AGG + chr2_2:69053810-69053829 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr2_2:69054030-69054049 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr2_2:69054030-69054049 Msa0267450:intron 40.0%
! GCATTAGTCTCCCAAATTGT+AGG + chr2_2:69054312-69054331 None:intergenic 40.0%
CAATTTGGGAGACTAATGCA+TGG - chr2_2:69054313-69054332 Msa0267450:intron 40.0%
TTTGCAGGCTTATAAATGGC+TGG - chr2_2:69054369-69054388 Msa0267450:intron 40.0%
!!! GGCTGGTTTTGTTTTTCCAA+AGG - chr2_2:69054386-69054405 Msa0267450:intron 40.0%
GGGACACCTACAAACAAAAT+AGG + chr2_2:69054456-69054475 None:intergenic 40.0%
GGATCACGAGTAAAAATTGC+TGG + chr2_2:69054504-69054523 None:intergenic 40.0%
!! TTGTGTGAACTCTAGAGCAT+TGG + chr2_2:69054532-69054551 None:intergenic 40.0%
AGAAACTAAGCAACTTCGTC+CGG + chr2_2:69054647-69054666 None:intergenic 40.0%
GCCTTCCAATATTGTCTTGA+GGG + chr2_2:69054713-69054732 None:intergenic 40.0%
! ATTGATCTGGCGTTTGGAAT+GGG + chr2_2:69054772-69054791 None:intergenic 40.0%
TATTGATCTGGCGTTTGGAA+TGG + chr2_2:69054773-69054792 None:intergenic 40.0%
AGACTTATTGATCTGGCGTT+TGG + chr2_2:69054778-69054797 None:intergenic 40.0%
TCCACTGAGACTTATTGATC+TGG + chr2_2:69054785-69054804 None:intergenic 40.0%
GATCAATAAGTCTCAGTGGA+TGG - chr2_2:69054785-69054804 Msa0267450:intron 40.0%
GTGAATTGCACACTATAGTG+TGG - chr2_2:69054854-69054873 Msa0267450:intron 40.0%
! GTAGATGTGGAAAGTACAGA+AGG + chr2_2:69054900-69054919 None:intergenic 40.0%
TGTATTCGCATTATACGTGC+TGG - chr2_2:69054951-69054970 Msa0267450:CDS 40.0%
TGAGCTTGAGCCATAAGCTA+TGG - chr2_2:69052026-69052045 Msa0267450:three_prime_UTR 45.0%
ATGGTGCAGAGGAGAGATAA+AGG + chr2_2:69052129-69052148 None:intergenic 45.0%
TATCTCTCCTCTGCACCATA+AGG - chr2_2:69052130-69052149 Msa0267450:three_prime_UTR 45.0%
CATGACTCCAAAACCCAGAA+GGG + chr2_2:69052210-69052229 None:intergenic 45.0%
! CTGAGCTTTTACTGTGATGC+TGG + chr2_2:69052445-69052464 None:intergenic 45.0%
AAAGCTCAGACAGCTGTTGA+AGG - chr2_2:69052456-69052475 Msa0267450:three_prime_UTR 45.0%
GAGATTGTCTCATATGGACC+CGG - chr2_2:69052742-69052761 Msa0267450:intron 45.0%
AGAAGGGTTCACCTTTAGAC+CGG + chr2_2:69052764-69052783 None:intergenic 45.0%
ACCTTTGGACCCATTTCTGA+AGG - chr2_2:69052838-69052857 Msa0267450:intron 45.0%
ACCTTCAGAAATGGGTCCAA+AGG + chr2_2:69052842-69052861 None:intergenic 45.0%
CAGTGTGGACCTTCAGAAAT+GGG + chr2_2:69052850-69052869 None:intergenic 45.0%
TTGTAGAGTGTACACCAGTG+TGG + chr2_2:69052865-69052884 None:intergenic 45.0%
GTTGTTAGTGTTCACCACGT+TGG - chr2_2:69053144-69053163 Msa0267450:intron 45.0%
!! ATACAGGGGTACTTGGTTGT+GGG - chr2_2:69053355-69053374 Msa0267450:intron 45.0%
AGGTCTTCCAGTTAAAGGGT+CGG + chr2_2:69053420-69053439 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr2_2:69054029-69054048 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr2_2:69054029-69054048 Msa0267450:intron 45.0%
GACTAATGCATGGCATACCT+CGG - chr2_2:69054323-69054342 Msa0267450:intron 45.0%
ACTAATGCATGGCATACCTC+GGG - chr2_2:69054324-69054343 Msa0267450:intron 45.0%
TGCTTCAGACCAAGATTTGC+AGG - chr2_2:69054354-69054373 Msa0267450:intron 45.0%
!! AACTCTAGAGCATTGGCATC+GGG + chr2_2:69054525-69054544 None:intergenic 45.0%
!! GAACTCTAGAGCATTGGCAT+CGG + chr2_2:69054526-69054545 None:intergenic 45.0%
!! TGTCTTGAGGGCATTTGCTA+CGG + chr2_2:69054701-69054720 None:intergenic 45.0%
GCCCTCAAGACAATATTGGA+AGG - chr2_2:69054709-69054728 Msa0267450:intron 45.0%
GGCCTTCCAATATTGTCTTG+AGG + chr2_2:69054714-69054733 None:intergenic 45.0%
GCCAGATCAATAAGTCTCAG+TGG - chr2_2:69054781-69054800 Msa0267450:intron 45.0%
AATATAGAGCCTTGCTGGCA+TGG - chr2_2:69054831-69054850 Msa0267450:intron 45.0%
ATATAGAGCCTTGCTGGCAT+GGG - chr2_2:69054832-69054851 Msa0267450:intron 45.0%
AAGAACATCATGAGCTCAGC+AGG - chr2_2:69055083-69055102 Msa0267450:five_prime_UTR 45.0%
AGAACATCATGAGCTCAGCA+GGG - chr2_2:69055084-69055103 Msa0267450:five_prime_UTR 45.0%
TCAGCAGGGTGTATCATTTG+TGG - chr2_2:69055098-69055117 Msa0267450:five_prime_UTR 45.0%
GGAAATGTGTGGCCACTGTT+TGG - chr2_2:69051966-69051985 Msa0267450:three_prime_UTR 50.0%
GGCTCAAGCTCACTGTTGAA+TGG + chr2_2:69052018-69052037 None:intergenic 50.0%
GCATGACTCCAAAACCCAGA+AGG + chr2_2:69052211-69052230 None:intergenic 50.0%
CTCATATGGACCCGGTCTAA+AGG - chr2_2:69052750-69052769 Msa0267450:intron 50.0%
GAAGGGTTCACCTTTAGACC+GGG + chr2_2:69052763-69052782 None:intergenic 50.0%
CCAGTGTGGACCTTCAGAAA+TGG + chr2_2:69052851-69052870 None:intergenic 50.0%
! CCATTTCTGAAGGTCCACAC+TGG - chr2_2:69052848-69052867 Msa0267450:intron 50.0%
!! AGCTTCCATACAGGGGTACT+TGG - chr2_2:69053348-69053367 Msa0267450:intron 50.0%
CACAACCAAGTACCCCTGTA+TGG + chr2_2:69053356-69053375 None:intergenic 50.0%
!! CATACAGGGGTACTTGGTTG+TGG - chr2_2:69053354-69053373 Msa0267450:intron 50.0%
CCAGTTAAAGGGTCGGGATT+TGG + chr2_2:69053413-69053432 None:intergenic 50.0%
CCAAATCCCGACCCTTTAAC+TGG - chr2_2:69053410-69053429 Msa0267450:intron 50.0%
GGTCTTCCAGTTAAAGGGTC+GGG + chr2_2:69053419-69053438 None:intergenic 50.0%
ACTGGAAGACCTCAACATGG+TGG - chr2_2:69053428-69053447 Msa0267450:intron 50.0%
CGGAACGACTAAGTGTGTAG+GGG + chr2_2:69054476-69054495 None:intergenic 50.0%
CCGGAACGACTAAGTGTGTA+GGG + chr2_2:69054477-69054496 None:intergenic 50.0%
CCCTACACACTTAGTCGTTC+CGG - chr2_2:69054474-69054493 Msa0267450:intron 50.0%
TCCGGAACGACTAAGTGTGT+AGG + chr2_2:69054478-69054497 None:intergenic 50.0%
!! TCTTGAGGGCATTTGCTACG+GGG + chr2_2:69054699-69054718 None:intergenic 50.0%
!! GTCTTGAGGGCATTTGCTAC+GGG + chr2_2:69054700-69054719 None:intergenic 50.0%
!! AGTTGCTTGGTGGTGTGCCA+TGG - chr2_2:69052082-69052101 Msa0267450:three_prime_UTR 55.0%
!! AGGGGTACTTGGTTGTGGGT+AGG - chr2_2:69053359-69053378 Msa0267450:intron 55.0%
! GGGGTACTTGGTTGTGGGTA+GGG - chr2_2:69053360-69053379 Msa0267450:intron 55.0%
CGATCTCGACCACCATGTTG+AGG + chr2_2:69053440-69053459 None:intergenic 55.0%
CATGGCATACCTCGGGATTG+TGG - chr2_2:69054331-69054350 Msa0267450:intron 55.0%
! TCTGAAGCACCACAATCCCG+AGG + chr2_2:69054343-69054362 None:intergenic 55.0%
TGCTACGGGGTTGTACACCA+TGG + chr2_2:69054686-69054705 None:intergenic 55.0%
! TCTGGCGTTTGGAATGGGAC+TGG + chr2_2:69054767-69054786 None:intergenic 55.0%
GCAATTCACCCATGCCAGCA+AGG + chr2_2:69054843-69054862 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 69051959 69055142 69051959 ID=Msa0267450;Name=Msa0267450
chr2_2 mRNA 69051959 69055142 69051959 ID=Msa0267450-mRNA-1;Parent=Msa0267450;Name=Msa0267450-mRNA-1;_AED=0.01;_eAED=0.01;_QI=142|1|1|1|1|1|5|579|189
chr2_2 exon 69051959 69052632 69051959 ID=Msa0267450-mRNA-1:exon:21975;Parent=Msa0267450-mRNA-1
chr2_2 exon 69053583 69053786 69053583 ID=Msa0267450-mRNA-1:exon:21974;Parent=Msa0267450-mRNA-1
chr2_2 exon 69053882 69053965 69053882 ID=Msa0267450-mRNA-1:exon:21973;Parent=Msa0267450-mRNA-1
chr2_2 exon 69054591 69054726 69054591 ID=Msa0267450-mRNA-1:exon:21972;Parent=Msa0267450-mRNA-1
chr2_2 exon 69054950 69055142 69054950 ID=Msa0267450-mRNA-1:exon:21971;Parent=Msa0267450-mRNA-1
chr2_2 five_prime_UTR 69055001 69055142 69055001 ID=Msa0267450-mRNA-1:five_prime_utr;Parent=Msa0267450-mRNA-1
chr2_2 CDS 69054950 69055000 69054950 ID=Msa0267450-mRNA-1:cds;Parent=Msa0267450-mRNA-1
chr2_2 CDS 69054591 69054726 69054591 ID=Msa0267450-mRNA-1:cds;Parent=Msa0267450-mRNA-1
chr2_2 CDS 69053882 69053965 69053882 ID=Msa0267450-mRNA-1:cds;Parent=Msa0267450-mRNA-1
chr2_2 CDS 69053583 69053786 69053583 ID=Msa0267450-mRNA-1:cds;Parent=Msa0267450-mRNA-1
chr2_2 CDS 69052538 69052632 69052538 ID=Msa0267450-mRNA-1:cds;Parent=Msa0267450-mRNA-1
chr2_2 three_prime_UTR 69051959 69052537 69051959 ID=Msa0267450-mRNA-1:three_prime_utr;Parent=Msa0267450-mRNA-1
Gene Sequence

>Msa0267450

ATGGCGTCTCTTCTCAAAATATCTTCCTTTATCTCTCCTCTGCACCATAAGTTGAATTATGTCAGTTTTTCTCCCAAATTTAACCATGTTAGTGTAAAAAATGAGAGATGGAATGCTCCCAGCATCACAGTAAAAGCTCAGACAGCTGTTGAAGGTGATGTAATTAACAATAAATCACAACAAAGCGATTATGGGGTTGTTAGTGTTCACCACGTTGGAATTTTATGTGAAAACCTAGAAAGATCACTTGACTTCTATCAAAACGTTCTAGGTCTGAAGATAAATGAAGCAAGGCCTCATGATAAGCTTCCATACAGGGGTACTTGGTTGTGGGTAGGGTCTGAGATGATTCACTTGATGGAACTTCCAAATCCCGACCCTTTAACTGGAAGACCTCAACATGGTGGTCGAGATCGTCACACTTGTATTGCAATCCGAGATGTTTCAAAGCTCAAAGCAATCCTTGATAAAGCTGGTGTCCCCTACACACTTAGTCGTTCCGGAAGACCAGCAATTTTTACTCGTGATCCCGATGCCAATGCTCTAGAGTTCACACAAATAGACGACTAA

Protein sequence

>Msa0267450

MASLLKISSFISPLHHKLNYVSFSPKFNHVSVKNERWNAPSITVKAQTAVEGDVINNKSQQSDYGVVSVHHVGILCENLERSLDFYQNVLGLKINEARPHDKLPYRGTWLWVGSEMIHLMELPNPDPLTGRPQHGGRDRHTCIAIRDVSKLKAILDKAGVPYTLSRSGRPAIFTRDPDANALEFTQIDD*