AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1266120


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1266120 MtrunA17_Chr4g0070901 95.855 193 4 1 1 189 1 193 6.86e-139 385
Msa1266120 MtrunA17_Chr4g0003581 29.365 126 82 2 68 188 13 136 4.85e-13 64.3
Msa1266120 MtrunA17_Chr4g0063501 26.772 127 86 3 68 189 9 133 3.78e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1266120 AT5G57040.1 66.497 197 56 4 1 187 1 197 6.26e-91 264
Msa1266120 AT1G80160.1 28.906 128 84 3 66 188 11 136 1.42e-12 63.2

Find 92 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACACTAACATGGTTAAATT+TGG 0.100270 8_2:+70869339 None:intergenic
TAACTATAATAATAATATTA+AGG 0.194899 8_2:-70869792 None:intergenic
AATGATTATGATGAATATTA+AGG 0.220075 8_2:-70866757 Msa1266120:three_prime_UTR
AGAAGTCAAGTGATCTTTCT+AGG 0.233471 8_2:+70868554 None:intergenic
TTTCCTTACTAAATTTCTTT+AGG 0.243956 8_2:-70866707 Msa1266120:three_prime_UTR
TGTTGAGGTCTTCCAGTTAA+AGG 0.262496 8_2:+70868314 None:intergenic
GACTTCTATCAAAACGTTCT+AGG 0.262666 8_2:-70868538 Msa1266120:intron
GGAAAGAAGTAGAAATTTAA+AGG 0.263257 8_2:+70866725 None:intergenic
CCAGTTAAAGGGTCGGGATT+TGG 0.299172 8_2:+70868326 None:intergenic
CCAAATCCCGACCCTTTAAC+TGG 0.341939 8_2:-70868326 Msa1266120:CDS
GCCTTCCAATATTGTCTTGA+GGG 0.345049 8_2:+70867026 None:intergenic
ACACTAACATGGTTAAATTT+GGG 0.349864 8_2:+70869340 None:intergenic
AGACTTATTGATCTGGCGTT+TGG 0.354695 8_2:+70866961 None:intergenic
GGGGTACTTGGTTGTGGGTA+GGG 0.358439 8_2:-70868376 Msa1266120:CDS
ACTGTCTTAACATTCTCATT+TGG 0.371354 8_2:+70867004 None:intergenic
AACTATAATAATAATATTAA+GGG 0.380437 8_2:-70869791 None:intergenic
TAATATTCATCATAATCATT+TGG 0.380482 8_2:+70866760 None:intergenic
GAAAGAAGTAGAAATTTAAA+GGG 0.387627 8_2:+70866726 None:intergenic
GTCTTGAGGGCATTTGCTAC+GGG 0.388134 8_2:+70867039 None:intergenic
CATACAGGGGTACTTGGTTG+TGG 0.393776 8_2:-70868382 Msa1266120:CDS
CCCTACACACTTAGTCGTTC+CGG 0.396329 8_2:-70867262 Msa1266120:CDS
AGCTTCCATACAGGGGTACT+TGG 0.398506 8_2:-70868388 Msa1266120:CDS
GTCTGAGATGATTCACTTGA+TGG 0.399218 8_2:-70868354 Msa1266120:CDS
AAGAACATCATGAGCTCAGC+AGG 0.409206 8_2:-70866653 Msa1266120:three_prime_UTR
GTTGAGGTCTTCCAGTTAAA+GGG 0.414396 8_2:+70868315 None:intergenic
AAATGCCCTCAAGACAATAT+TGG 0.416785 8_2:-70867031 Msa1266120:three_prime_UTR
TCAGCAGGGTGTATCATTTG+TGG 0.416975 8_2:-70866638 Msa1266120:three_prime_UTR
ATTGATCTGGCGTTTGGAAT+GGG 0.426938 8_2:+70866967 None:intergenic
TGTCTTGAGGGCATTTGCTA+CGG 0.432286 8_2:+70867038 None:intergenic
CTCATGATAAGCTTCCATAC+AGG 0.443284 8_2:-70868397 Msa1266120:CDS
CTTTGAGCTTTGAAACATCT+CGG 0.452869 8_2:+70868258 None:intergenic
AACTCTAGAGCATTGGCATC+GGG 0.453503 8_2:+70867214 None:intergenic
TATTGATCTGGCGTTTGGAA+TGG 0.458729 8_2:+70866966 None:intergenic
AATATAGAGCCTTGCTGGCA+TGG 0.461428 8_2:-70866905 Msa1266120:three_prime_UTR
ATGGTGCAGAGGAGAGATAA+AGG 0.468270 8_2:+70869610 None:intergenic
AGGGGTACTTGGTTGTGGGT+AGG 0.472701 8_2:-70868377 Msa1266120:CDS
ATACAGGGGTACTTGGTTGT+GGG 0.474122 8_2:-70868381 Msa1266120:CDS
CACAACCAAGTACCCCTGTA+TGG 0.474951 8_2:+70868383 None:intergenic
AAGGAATACCAGCTTTATCA+AGG 0.477535 8_2:+70868231 None:intergenic
AAAGTACAGAAGGAACAAAA+TGG 0.481527 8_2:+70866849 None:intergenic
AGAAACTAAGCAACTTCGTC+CGG 0.482401 8_2:+70867092 None:intergenic
TTAGTTTCTTTATTACAGAT+AGG 0.483392 8_2:-70867078 Msa1266120:three_prime_UTR
ACTCCTAAAGAAATTTAGTA+AGG 0.492573 8_2:+70866704 None:intergenic
GGTCTTCCAGTTAAAGGGTC+GGG 0.492662 8_2:+70868320 None:intergenic
GGCTCAAGCTCACTGTTGAA+TGG 0.498930 8_2:+70869721 None:intergenic
CCGGAACGACTAAGTGTGTA+GGG 0.499756 8_2:+70867262 None:intergenic
TATCTCTCCTCTGCACCATA+AGG 0.501313 8_2:-70869606 Msa1266120:intron
TGTATTCGCATTATACGTGC+TGG 0.503488 8_2:-70866785 Msa1266120:three_prime_UTR
AAAGCTCAGACAGCTGTTGA+AGG 0.503913 8_2:-70869280 Msa1266120:CDS
TCCACTGAGACTTATTGATC+TGG 0.512397 8_2:+70866954 None:intergenic
GGAAATGTGTGGCCACTGTT+TGG 0.513236 8_2:-70869770 Msa1266120:five_prime_UTR
ATGGCATAAAACAAACAAAC+CGG 0.518443 8_2:-70869691 Msa1266120:five_prime_UTR
AAAGCAATCCTTGATAAAGC+TGG 0.525820 8_2:-70868239 Msa1266120:intron
TATATGAAGTATATATGTAA+AGG 0.533711 8_2:-70867115 Msa1266120:three_prime_UTR
GGCCTTCCAATATTGTCTTG+AGG 0.540635 8_2:+70867025 None:intergenic
TTTATTACAGATAGGAGCCA+TGG 0.552439 8_2:-70867070 Msa1266120:three_prime_UTR
ATATAGAGCCTTGCTGGCAT+GGG 0.554171 8_2:-70866904 Msa1266120:three_prime_UTR
TAGATGAGTTAGTAGTTGCT+TGG 0.556430 8_2:-70869667 Msa1266120:five_prime_UTR
CAACTACTAACTCATCTATC+CGG 0.558789 8_2:+70869672 None:intergenic
TTGTGTGAACTCTAGAGCAT+TGG 0.560534 8_2:+70867207 None:intergenic
GAACTCTAGAGCATTGGCAT+CGG 0.561687 8_2:+70867213 None:intergenic
TCATGATAAGCTTCCATACA+GGG 0.562411 8_2:-70868396 Msa1266120:CDS
GATCAATAAGTCTCAGTGGA+TGG 0.574132 8_2:-70866951 Msa1266120:three_prime_UTR
TCTGGCGTTTGGAATGGGAC+TGG 0.575542 8_2:+70866972 None:intergenic
ATGAGTTAGTAGTTGCTTGG+TGG 0.577497 8_2:-70869664 Msa1266120:five_prime_UTR
TGAGCTTGAGCCATAAGCTA+TGG 0.581714 8_2:-70869710 Msa1266120:five_prime_UTR
AGTTGCTTGGTGGTGTGCCA+TGG 0.581728 8_2:-70869654 Msa1266120:exon
AGGTCTTCCAGTTAAAGGGT+CGG 0.582962 8_2:+70868319 None:intergenic
TGAAGTATATATGTAAAGGC+CGG 0.589516 8_2:-70867111 Msa1266120:three_prime_UTR
AAAGTTGCAGAAAGTAGATG+TGG 0.594415 8_2:+70866826 None:intergenic
AAAATTACCTTATGGTGCAG+AGG 0.608299 8_2:+70869599 None:intergenic
GTTGTTAGTGTTCACCACGT+TGG 0.609271 8_2:-70868592 Msa1266120:CDS
GTAGATGTGGAAAGTACAGA+AGG 0.611646 8_2:+70866839 None:intergenic
GCAATTCACCCATGCCAGCA+AGG 0.613915 8_2:+70866896 None:intergenic
GTCTGAAGATAAATGAAGCA+AGG 0.614060 8_2:-70868421 Msa1266120:CDS
CGATCTCGACCACCATGTTG+AGG 0.616412 8_2:+70868299 None:intergenic
AACAATAAATCACAACAAAG+CGG 0.626922 8_2:-70869247 Msa1266120:intron
GCCCTCAAGACAATATTGGA+AGG 0.628618 8_2:-70867027 Msa1266120:three_prime_UTR
TCTTGAGGGCATTTGCTACG+GGG 0.639840 8_2:+70867040 None:intergenic
TCCGGAACGACTAAGTGTGT+AGG 0.642716 8_2:+70867261 None:intergenic
TGCTACGGGGTTGTACACCA+TGG 0.645668 8_2:+70867053 None:intergenic
CTGTATGGAAGCTTATCATG+AGG 0.667307 8_2:+70868398 None:intergenic
GCCAGATCAATAAGTCTCAG+TGG 0.677914 8_2:-70866955 Msa1266120:three_prime_UTR
AGAACATCATGAGCTCAGCA+GGG 0.685366 8_2:-70866652 Msa1266120:three_prime_UTR
ATAATATTAAGGGAAATGTG+TGG 0.690465 8_2:-70869781 None:intergenic
CATGATAAGCTTCCATACAG+GGG 0.695350 8_2:-70868395 Msa1266120:CDS
AGCAAACAAACACCAAACAG+TGG 0.708967 8_2:+70869758 None:intergenic
TTAACTGGAAGACCTCAACA+TGG 0.719889 8_2:-70868311 Msa1266120:CDS
CGGAACGACTAAGTGTGTAG+GGG 0.721717 8_2:+70867263 None:intergenic
ACTGGAAGACCTCAACATGG+TGG 0.730509 8_2:-70868308 Msa1266120:CDS
GTGAATTGCACACTATAGTG+TGG 0.781145 8_2:-70866882 Msa1266120:three_prime_UTR
TTTCACATAAAATTCCAACG+TGG 0.798314 8_2:+70868578 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCTAATAATAATCATTAAT+AGG - chr8_2:70866909-70866928 Msa1266120:three_prime_UTR 10.0%
!! CATTTATTTAATAAGTATTT+AGG - chr8_2:70867220-70867239 Msa1266120:CDS 10.0%
!! AAAATTTACTAAAAATAGAA+GGG + chr8_2:70867437-70867456 None:intergenic 10.0%
!! TAAAATTTACTAAAAATAGA+AGG + chr8_2:70867438-70867457 None:intergenic 10.0%
!! ATTATAAATTGTTTACAATA+AGG + chr8_2:70867620-70867639 None:intergenic 10.0%
!!! TTTTGCAAAAAAAAAAAAAG+AGG + chr8_2:70867587-70867606 None:intergenic 15.0%
!! TATTGAATTAAATGAAATAC+AGG - chr8_2:70867950-70867969 Msa1266120:intron 15.0%
!! TTAAAATAAGTAGTAAATCT+TGG - chr8_2:70868200-70868219 Msa1266120:intron 15.0%
!!! TAGTTTTAAAAGTAATACTT+TGG + chr8_2:70868577-70868596 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG + chr8_2:70868601-70868620 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATT+TGG - chr8_2:70868600-70868619 Msa1266120:CDS 15.0%
!!! ATCACATTATTATTTTAGAA+TGG + chr8_2:70868907-70868926 None:intergenic 15.0%
!! TATATGAAGTATATATGTAA+AGG - chr8_2:70869278-70869297 Msa1266120:CDS 15.0%
!! TAATATTCATCATAATCATT+TGG + chr8_2:70869636-70869655 None:intergenic 15.0%
!! AATGATTATGATGAATATTA+AGG - chr8_2:70869636-70869655 Msa1266120:CDS 15.0%
!! TGAATTACAAAATTACCTTA+TGG + chr8_2:70866805-70866824 None:intergenic 20.0%
!! TTATAAAAATACAGTAGTTG+AGG - chr8_2:70867664-70867683 Msa1266120:intron 20.0%
!!! GCTATTTGTATAATGTTTTT+TGG - chr8_2:70867760-70867779 Msa1266120:intron 20.0%
!!! TTTTGGTATTTTTCAGATTA+TGG - chr8_2:70867777-70867796 Msa1266120:intron 20.0%
!!! TTTGGTATTTTTCAGATTAT+GGG - chr8_2:70867778-70867797 Msa1266120:intron 20.0%
!! TTAATTTAAAGAAGTAGAGA+AGG + chr8_2:70868184-70868203 None:intergenic 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG + chr8_2:70868514-70868533 None:intergenic 20.0%
!! AAACTAACCAATAGTTAATA+AGG - chr8_2:70868591-70868610 Msa1266120:CDS 20.0%
!!! AAGTGTTTTTAATTTCAAGA+GGG + chr8_2:70868830-70868849 None:intergenic 20.0%
!!! AAAGTGTTTTTAATTTCAAG+AGG + chr8_2:70868831-70868850 None:intergenic 20.0%
!!! TTATCTTTGAAATAACTAAC+AGG + chr8_2:70868934-70868953 None:intergenic 20.0%
!! TTAGTTTCTTTATTACAGAT+AGG - chr8_2:70869315-70869334 Msa1266120:CDS 20.0%
!! GAAAGAAGTAGAAATTTAAA+GGG + chr8_2:70869670-70869689 None:intergenic 20.0%
!! TTTCCTTACTAAATTTCTTT+AGG - chr8_2:70869686-70869705 Msa1266120:five_prime_UTR 20.0%
! GGCAAAAATTGATATAAGAT+TGG + chr8_2:70866837-70866856 None:intergenic 25.0%
! ATCATGAATAGATTGATTGA+TGG + chr8_2:70866964-70866983 None:intergenic 25.0%
! ACACTAACATGGTTAAATTT+GGG + chr8_2:70867056-70867075 None:intergenic 25.0%
! TACACTAACATGGTTAAATT+TGG + chr8_2:70867057-70867076 None:intergenic 25.0%
!!! TCTCATTTTTTACACTAACA+TGG + chr8_2:70867067-70867086 None:intergenic 25.0%
! TTAGTGTAAAAAATGAGAGA+TGG - chr8_2:70867069-70867088 Msa1266120:three_prime_UTR 25.0%
! AACAATAAATCACAACAAAG+CGG - chr8_2:70867146-70867165 Msa1266120:three_prime_UTR 25.0%
! AAAGGTGAACGAAAAATAAA+AGG + chr8_2:70867481-70867500 None:intergenic 25.0%
!!! TTTTATTTTTCGTTCACCTT+TGG - chr8_2:70867480-70867499 Msa1266120:intron 25.0%
!!! TTGGTATTTTTCAGATTATG+GGG - chr8_2:70867779-70867798 Msa1266120:intron 25.0%
! ATAAAGTAGCAGATTGAATT+CGG + chr8_2:70868434-70868453 None:intergenic 25.0%
! AATGATTAAGAGAAAGAGAA+TGG + chr8_2:70868634-70868653 None:intergenic 25.0%
!!! CTTTTTCCTATTTTGTTTGT+AGG - chr8_2:70869104-70869123 Msa1266120:intron 25.0%
!! AAATAGACGACTAATGTTTT+TGG - chr8_2:70869207-70869226 Msa1266120:intron 25.0%
! GGAAAGAAGTAGAAATTTAA+AGG + chr8_2:70869671-70869690 None:intergenic 25.0%
! ACTCCTAAAGAAATTTAGTA+AGG + chr8_2:70869692-70869711 None:intergenic 25.0%
!! TTGTTTTATGCCATAGCTTA+TGG + chr8_2:70866696-70866715 None:intergenic 30.0%
ATGGCATAAAACAAACAAAC+CGG - chr8_2:70866702-70866721 Msa1266120:three_prime_UTR 30.0%
TGATATAAGATTGGAGAAGA+TGG + chr8_2:70866828-70866847 None:intergenic 30.0%
ATAAGTATTTAGGCACTCTT+TGG - chr8_2:70867230-70867249 Msa1266120:CDS 30.0%
!!! GTTGTTTTTATAAGCTATCC+AGG - chr8_2:70867337-70867356 Msa1266120:intron 30.0%
!! TTTATTTTCATAAGCTCTCC+TGG + chr8_2:70867358-70867377 None:intergenic 30.0%
AAACATGAGATTGTCTCATA+TGG - chr8_2:70867393-70867412 Msa1266120:intron 30.0%
!! AAAAAAGAGGCATCTATGAT+TGG + chr8_2:70867574-70867593 None:intergenic 30.0%
! AGTCTTCCAATTATTTTCAC+TGG + chr8_2:70867691-70867710 None:intergenic 30.0%
TTTCACATAAAATTCCAACG+TGG + chr8_2:70867818-70867837 None:intergenic 30.0%
CATAAGTTCGTATGACTATT+TGG - chr8_2:70868242-70868261 Msa1266120:CDS 30.0%
! GTAGTGTGCAAAGTATTAAT+TGG + chr8_2:70868552-70868571 None:intergenic 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG + chr8_2:70868682-70868701 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG - chr8_2:70868683-70868702 Msa1266120:intron 30.0%
!! TGTCAGCCTTTAGAATTATA+GGG - chr8_2:70868789-70868808 Msa1266120:intron 30.0%
ATAGATTGATCCCTACAATT+TGG - chr8_2:70868955-70868974 Msa1266120:intron 30.0%
TAGATTGATCCCTACAATTT+GGG - chr8_2:70868956-70868975 Msa1266120:intron 30.0%
ATTTATAAGCCTGCAAATCT+TGG + chr8_2:70869023-70869042 None:intergenic 30.0%
AAGATTTGCAGGCTTATAAA+TGG - chr8_2:70869022-70869041 Msa1266120:intron 30.0%
AGATATTAGAGAATCTCCTT+TGG + chr8_2:70869062-70869081 None:intergenic 30.0%
TGAAGTATATATGTAAAGGC+CGG - chr8_2:70869282-70869301 Msa1266120:CDS 30.0%
ACTGTCTTAACATTCTCATT+TGG + chr8_2:70869392-70869411 None:intergenic 30.0%
AAAGTACAGAAGGAACAAAA+TGG + chr8_2:70869547-70869566 None:intergenic 30.0%
CAACTACTAACTCATCTATC+CGG + chr8_2:70866724-70866743 None:intergenic 35.0%
TAGATGAGTTAGTAGTTGCT+TGG - chr8_2:70866726-70866745 Msa1266120:three_prime_UTR 35.0%
AAAATTACCTTATGGTGCAG+AGG + chr8_2:70866797-70866816 None:intergenic 35.0%
ATGCTCACAAGTTGCTAAAT+CGG - chr8_2:70866884-70866903 Msa1266120:three_prime_UTR 35.0%
AATTCAACTGCAACAGAAGA+AGG + chr8_2:70867019-70867038 None:intergenic 35.0%
TACACTCTACAAAACAGTCT+CGG - chr8_2:70867530-70867549 Msa1266120:intron 35.0%
TGAGGACCAGTGAAAATAAT+TGG - chr8_2:70867682-70867701 Msa1266120:intron 35.0%
AGAAGTCAAGTGATCTTTCT+AGG + chr8_2:70867842-70867861 None:intergenic 35.0%
GACTTCTATCAAAACGTTCT+AGG - chr8_2:70867855-70867874 Msa1266120:intron 35.0%
GTCTGAAGATAAATGAAGCA+AGG - chr8_2:70867972-70867991 Msa1266120:intron 35.0%
TCATGATAAGCTTCCATACA+GGG - chr8_2:70867997-70868016 Msa1266120:intron 35.0%
!! CTTTGAGCTTTGAAACATCT+CGG + chr8_2:70868138-70868157 None:intergenic 35.0%
AAAGCAATCCTTGATAAAGC+TGG - chr8_2:70868154-70868173 Msa1266120:intron 35.0%
! AAGGAATACCAGCTTTATCA+AGG + chr8_2:70868165-70868184 None:intergenic 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + chr8_2:70868484-70868503 None:intergenic 35.0%
! TGTGCAAAGTATTAATTGGC+GGG + chr8_2:70868548-70868567 None:intergenic 35.0%
! GTGTGCAAAGTATTAATTGG+CGG + chr8_2:70868549-70868568 None:intergenic 35.0%
!! GTGTCAGCCTTTAGAATTAT+AGG - chr8_2:70868788-70868807 Msa1266120:intron 35.0%
!! AGCCTTTAGAATTATAGGGA+TGG - chr8_2:70868793-70868812 Msa1266120:intron 35.0%
GTCCATCCCTATAATTCTAA+AGG + chr8_2:70868798-70868817 None:intergenic 35.0%
TCTTGATCACTATAGTACTC+AGG - chr8_2:70868873-70868892 Msa1266120:intron 35.0%
CTTGATCACTATAGTACTCA+GGG - chr8_2:70868874-70868893 Msa1266120:intron 35.0%
! CATTAGTCTCCCAAATTGTA+GGG + chr8_2:70868968-70868987 None:intergenic 35.0%
!! AGTAAAAATTGCTGGTCTTC+CGG + chr8_2:70869153-70869172 None:intergenic 35.0%
TTTATTACAGATAGGAGCCA+TGG - chr8_2:70869323-70869342 Msa1266120:CDS 35.0%
AAATGCCCTCAAGACAATAT+TGG - chr8_2:70869362-70869381 Msa1266120:CDS 35.0%
AGAAAAATATAGAGCCTTGC+TGG - chr8_2:70869483-70869502 Msa1266120:intron 35.0%
AAAGTTGCAGAAAGTAGATG+TGG + chr8_2:70869570-70869589 None:intergenic 35.0%
AGCAAACAAACACCAAACAG+TGG + chr8_2:70866638-70866657 None:intergenic 40.0%
ATGAGTTAGTAGTTGCTTGG+TGG - chr8_2:70866729-70866748 Msa1266120:three_prime_UTR 40.0%
!! TATTTTGAGAAGAGACGCCA+TGG + chr8_2:70866759-70866778 None:intergenic 40.0%
!! TTTTGCCATTTCTACCCTTC+TGG - chr8_2:70866850-70866869 Msa1266120:three_prime_UTR 40.0%
! TTTGCCATTTCTACCCTTCT+GGG - chr8_2:70866851-70866870 Msa1266120:three_prime_UTR 40.0%
AAAACCCAGAAGGGTAGAAA+TGG + chr8_2:70866858-70866877 None:intergenic 40.0%
! ATTTCTACCCTTCTGGGTTT+TGG - chr8_2:70866857-70866876 Msa1266120:three_prime_UTR 40.0%
! TGAGCTTTTACTGTGATGCT+GGG + chr8_2:70867101-70867120 None:intergenic 40.0%
GTTTAGATTCAAAGAGCTGC+AGG + chr8_2:70867885-70867904 None:intergenic 40.0%
CTGTATGGAAGCTTATCATG+AGG + chr8_2:70867998-70868017 None:intergenic 40.0%
CTCATGATAAGCTTCCATAC+AGG - chr8_2:70867996-70868015 Msa1266120:intron 40.0%
CATGATAAGCTTCCATACAG+GGG - chr8_2:70867998-70868017 Msa1266120:intron 40.0%
! GTCTGAGATGATTCACTTGA+TGG - chr8_2:70868039-70868058 Msa1266120:intron 40.0%
GTTGAGGTCTTCCAGTTAAA+GGG + chr8_2:70868081-70868100 None:intergenic 40.0%
TGTTGAGGTCTTCCAGTTAA+AGG + chr8_2:70868082-70868101 None:intergenic 40.0%
TTAACTGGAAGACCTCAACA+TGG - chr8_2:70868082-70868101 Msa1266120:intron 40.0%
AAACGGAGGGAGTAAATAAC+AGG + chr8_2:70868467-70868486 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr8_2:70868687-70868706 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr8_2:70868687-70868706 Msa1266120:intron 40.0%
! GCATTAGTCTCCCAAATTGT+AGG + chr8_2:70868969-70868988 None:intergenic 40.0%
CAATTTGGGAGACTAATGCA+TGG - chr8_2:70868970-70868989 Msa1266120:intron 40.0%
TTTGCAGGCTTATAAATGGC+TGG - chr8_2:70869026-70869045 Msa1266120:intron 40.0%
!!! GGCTGGTTTTGTTTTTCCAA+AGG - chr8_2:70869043-70869062 Msa1266120:intron 40.0%
GGGACACCTACAAACAAAAT+AGG + chr8_2:70869113-70869132 None:intergenic 40.0%
GGATCACGAGTAAAAATTGC+TGG + chr8_2:70869161-70869180 None:intergenic 40.0%
!! TTGTGTGAACTCTAGAGCAT+TGG + chr8_2:70869189-70869208 None:intergenic 40.0%
AGAAACTAAGCAACTTCGTC+CGG + chr8_2:70869304-70869323 None:intergenic 40.0%
GCCTTCCAATATTGTCTTGA+GGG + chr8_2:70869370-70869389 None:intergenic 40.0%
! ATTGATCTGGCGTTTGGAAT+GGG + chr8_2:70869429-70869448 None:intergenic 40.0%
TATTGATCTGGCGTTTGGAA+TGG + chr8_2:70869430-70869449 None:intergenic 40.0%
AGACTTATTGATCTGGCGTT+TGG + chr8_2:70869435-70869454 None:intergenic 40.0%
TCCACTGAGACTTATTGATC+TGG + chr8_2:70869442-70869461 None:intergenic 40.0%
GATCAATAAGTCTCAGTGGA+TGG - chr8_2:70869442-70869461 Msa1266120:intron 40.0%
GTGAATTGCACACTATAGTG+TGG - chr8_2:70869511-70869530 Msa1266120:intron 40.0%
! GTAGATGTGGAAAGTACAGA+AGG + chr8_2:70869557-70869576 None:intergenic 40.0%
TGTATTCGCATTATACGTGC+TGG - chr8_2:70869608-70869627 Msa1266120:CDS 40.0%
TGAGCTTGAGCCATAAGCTA+TGG - chr8_2:70866683-70866702 Msa1266120:three_prime_UTR 45.0%
ATGGTGCAGAGGAGAGATAA+AGG + chr8_2:70866786-70866805 None:intergenic 45.0%
TATCTCTCCTCTGCACCATA+AGG - chr8_2:70866787-70866806 Msa1266120:three_prime_UTR 45.0%
CATGACTCCAAAACCCAGAA+GGG + chr8_2:70866867-70866886 None:intergenic 45.0%
! CTGAGCTTTTACTGTGATGC+TGG + chr8_2:70867102-70867121 None:intergenic 45.0%
AAAGCTCAGACAGCTGTTGA+AGG - chr8_2:70867113-70867132 Msa1266120:three_prime_UTR 45.0%
GAGATTGTCTCATATGGACC+CGG - chr8_2:70867399-70867418 Msa1266120:intron 45.0%
AGAAGGGTTCACCTTTAGAC+CGG + chr8_2:70867421-70867440 None:intergenic 45.0%
ACCTTTGGACCCATTTCTGA+AGG - chr8_2:70867495-70867514 Msa1266120:intron 45.0%
ACCTTCAGAAATGGGTCCAA+AGG + chr8_2:70867499-70867518 None:intergenic 45.0%
CAGTGTGGACCTTCAGAAAT+GGG + chr8_2:70867507-70867526 None:intergenic 45.0%
TTGTAGAGTGTACACCAGTG+TGG + chr8_2:70867522-70867541 None:intergenic 45.0%
GTTGTTAGTGTTCACCACGT+TGG - chr8_2:70867801-70867820 Msa1266120:intron 45.0%
!! ATACAGGGGTACTTGGTTGT+GGG - chr8_2:70868012-70868031 Msa1266120:intron 45.0%
AGGTCTTCCAGTTAAAGGGT+CGG + chr8_2:70868077-70868096 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr8_2:70868686-70868705 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr8_2:70868686-70868705 Msa1266120:intron 45.0%
GACTAATGCATGGCATACCT+CGG - chr8_2:70868980-70868999 Msa1266120:intron 45.0%
ACTAATGCATGGCATACCTC+GGG - chr8_2:70868981-70869000 Msa1266120:intron 45.0%
TGCTTCAGACCAAGATTTGC+AGG - chr8_2:70869011-70869030 Msa1266120:intron 45.0%
!! AACTCTAGAGCATTGGCATC+GGG + chr8_2:70869182-70869201 None:intergenic 45.0%
!! GAACTCTAGAGCATTGGCAT+CGG + chr8_2:70869183-70869202 None:intergenic 45.0%
!! TGTCTTGAGGGCATTTGCTA+CGG + chr8_2:70869358-70869377 None:intergenic 45.0%
GCCCTCAAGACAATATTGGA+AGG - chr8_2:70869366-70869385 Msa1266120:intron 45.0%
GGCCTTCCAATATTGTCTTG+AGG + chr8_2:70869371-70869390 None:intergenic 45.0%
GCCAGATCAATAAGTCTCAG+TGG - chr8_2:70869438-70869457 Msa1266120:intron 45.0%
AATATAGAGCCTTGCTGGCA+TGG - chr8_2:70869488-70869507 Msa1266120:intron 45.0%
ATATAGAGCCTTGCTGGCAT+GGG - chr8_2:70869489-70869508 Msa1266120:intron 45.0%
AAGAACATCATGAGCTCAGC+AGG - chr8_2:70869740-70869759 Msa1266120:five_prime_UTR 45.0%
AGAACATCATGAGCTCAGCA+GGG - chr8_2:70869741-70869760 Msa1266120:five_prime_UTR 45.0%
TCAGCAGGGTGTATCATTTG+TGG - chr8_2:70869755-70869774 Msa1266120:five_prime_UTR 45.0%
GGAAATGTGTGGCCACTGTT+TGG - chr8_2:70866623-70866642 Msa1266120:three_prime_UTR 50.0%
GGCTCAAGCTCACTGTTGAA+TGG + chr8_2:70866675-70866694 None:intergenic 50.0%
GCATGACTCCAAAACCCAGA+AGG + chr8_2:70866868-70866887 None:intergenic 50.0%
CTCATATGGACCCGGTCTAA+AGG - chr8_2:70867407-70867426 Msa1266120:intron 50.0%
GAAGGGTTCACCTTTAGACC+GGG + chr8_2:70867420-70867439 None:intergenic 50.0%
CCAGTGTGGACCTTCAGAAA+TGG + chr8_2:70867508-70867527 None:intergenic 50.0%
! CCATTTCTGAAGGTCCACAC+TGG - chr8_2:70867505-70867524 Msa1266120:intron 50.0%
!! AGCTTCCATACAGGGGTACT+TGG - chr8_2:70868005-70868024 Msa1266120:intron 50.0%
CACAACCAAGTACCCCTGTA+TGG + chr8_2:70868013-70868032 None:intergenic 50.0%
!! CATACAGGGGTACTTGGTTG+TGG - chr8_2:70868011-70868030 Msa1266120:intron 50.0%
CCAGTTAAAGGGTCGGGATT+TGG + chr8_2:70868070-70868089 None:intergenic 50.0%
CCAAATCCCGACCCTTTAAC+TGG - chr8_2:70868067-70868086 Msa1266120:intron 50.0%
GGTCTTCCAGTTAAAGGGTC+GGG + chr8_2:70868076-70868095 None:intergenic 50.0%
ACTGGAAGACCTCAACATGG+TGG - chr8_2:70868085-70868104 Msa1266120:intron 50.0%
CGGAACGACTAAGTGTGTAG+GGG + chr8_2:70869133-70869152 None:intergenic 50.0%
CCGGAACGACTAAGTGTGTA+GGG + chr8_2:70869134-70869153 None:intergenic 50.0%
CCCTACACACTTAGTCGTTC+CGG - chr8_2:70869131-70869150 Msa1266120:intron 50.0%
TCCGGAACGACTAAGTGTGT+AGG + chr8_2:70869135-70869154 None:intergenic 50.0%
!! TCTTGAGGGCATTTGCTACG+GGG + chr8_2:70869356-70869375 None:intergenic 50.0%
!! GTCTTGAGGGCATTTGCTAC+GGG + chr8_2:70869357-70869376 None:intergenic 50.0%
!! AGTTGCTTGGTGGTGTGCCA+TGG - chr8_2:70866739-70866758 Msa1266120:three_prime_UTR 55.0%
!! AGGGGTACTTGGTTGTGGGT+AGG - chr8_2:70868016-70868035 Msa1266120:intron 55.0%
! GGGGTACTTGGTTGTGGGTA+GGG - chr8_2:70868017-70868036 Msa1266120:intron 55.0%
CGATCTCGACCACCATGTTG+AGG + chr8_2:70868097-70868116 None:intergenic 55.0%
CATGGCATACCTCGGGATTG+TGG - chr8_2:70868988-70869007 Msa1266120:intron 55.0%
! TCTGAAGCACCACAATCCCG+AGG + chr8_2:70869000-70869019 None:intergenic 55.0%
TGCTACGGGGTTGTACACCA+TGG + chr8_2:70869343-70869362 None:intergenic 55.0%
! TCTGGCGTTTGGAATGGGAC+TGG + chr8_2:70869424-70869443 None:intergenic 55.0%
GCAATTCACCCATGCCAGCA+AGG + chr8_2:70869500-70869519 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 70866616 70869799 70866616 ID=Msa1266120;Name=Msa1266120
chr8_2 mRNA 70866616 70869799 70866616 ID=Msa1266120-mRNA-1;Parent=Msa1266120;Name=Msa1266120-mRNA-1;_AED=0.01;_eAED=0.01;_QI=142|1|1|1|1|1|5|579|189
chr8_2 exon 70866616 70867289 70866616 ID=Msa1266120-mRNA-1:exon:23580;Parent=Msa1266120-mRNA-1
chr8_2 exon 70868240 70868443 70868240 ID=Msa1266120-mRNA-1:exon:23579;Parent=Msa1266120-mRNA-1
chr8_2 exon 70868539 70868622 70868539 ID=Msa1266120-mRNA-1:exon:23578;Parent=Msa1266120-mRNA-1
chr8_2 exon 70869248 70869383 70869248 ID=Msa1266120-mRNA-1:exon:23577;Parent=Msa1266120-mRNA-1
chr8_2 exon 70869607 70869799 70869607 ID=Msa1266120-mRNA-1:exon:23576;Parent=Msa1266120-mRNA-1
chr8_2 five_prime_UTR 70869658 70869799 70869658 ID=Msa1266120-mRNA-1:five_prime_utr;Parent=Msa1266120-mRNA-1
chr8_2 CDS 70869607 70869657 70869607 ID=Msa1266120-mRNA-1:cds;Parent=Msa1266120-mRNA-1
chr8_2 CDS 70869248 70869383 70869248 ID=Msa1266120-mRNA-1:cds;Parent=Msa1266120-mRNA-1
chr8_2 CDS 70868539 70868622 70868539 ID=Msa1266120-mRNA-1:cds;Parent=Msa1266120-mRNA-1
chr8_2 CDS 70868240 70868443 70868240 ID=Msa1266120-mRNA-1:cds;Parent=Msa1266120-mRNA-1
chr8_2 CDS 70867195 70867289 70867195 ID=Msa1266120-mRNA-1:cds;Parent=Msa1266120-mRNA-1
chr8_2 three_prime_UTR 70866616 70867194 70866616 ID=Msa1266120-mRNA-1:three_prime_utr;Parent=Msa1266120-mRNA-1
Gene Sequence

>Msa1266120

ATGGCGTCTCTTCTCAAAATATCTTCCTTTATCTCTCCTCTGCACCATAAGTTGAATTATGTCAGTTTTTCTCCCAAATTTAACCATGTTAGTGTAAAAAATGAGAGATGGAATGCTCCCAGCATCACAGTAAAAGCTCAGACAGCTGTTGAAGGTGATGTAATTAACAATAAATCACAACAAAGCGATTATGGGGTTGTTAGTGTTCACCACGTTGGAATTTTATGTGAAAACCTAGAAAGATCACTTGACTTCTATCAAAACGTTCTAGGTCTGAAGATAAATGAAGCAAGGCCTCATGATAAGCTTCCATACAGGGGTACTTGGTTGTGGGTAGGGTCTGAGATGATTCACTTGATGGAACTTCCAAATCCCGACCCTTTAACTGGAAGACCTCAACATGGTGGTCGAGATCGTCACACTTGTATTGCAATCCGAGATGTTTCAAAGCTCAAAGCAATCCTTGATAAAGCTGGTGTCCCCTACACACTTAGTCGTTCCGGAAGACCAGCAATTTTTACTCGTGATCCCGATGCCAATGCTCTAGAGTTCACACAAATAGACGACTAA

Protein sequence

>Msa1266120

MASLLKISSFISPLHHKLNYVSFSPKFNHVSVKNERWNAPSITVKAQTAVEGDVINNKSQQSDYGVVSVHHVGILCENLERSLDFYQNVLGLKINEARPHDKLPYRGTWLWVGSEMIHLMELPNPDPLTGRPQHGGRDRHTCIAIRDVSKLKAILDKAGVPYTLSRSGRPAIFTRDPDANALEFTQIDD*