AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0044780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0044780 MtrunA17_Chr1g0211411 95.319 235 6 3 1 234 1 231 1.64e-163 451
Msa0044780 MtrunA17_Chr4g0023841 55.556 54 24 0 143 196 89 142 1.27e-15 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0044780 AT5G27280.1 55.959 193 61 4 46 233 39 212 5.54e-65 201
Msa0044780 AT1G68730.1 55.000 60 27 0 137 196 96 155 2.73e-16 74.3

Find 68 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATCACTTGAACTTGTTTC+AGG 0.209481 1_1:-76373488 Msa0044780:CDS
ATGAGTGAATTGCCAGCTTA+TGG 0.279283 1_1:-76373350 Msa0044780:exon
CTTCATCTTGTGAGATGGTT+AGG 0.294170 1_1:-76373105 Msa0044780:three_prime_UTR
CTGCCTCTGATCATCATATA+AGG 0.303523 1_1:-76373315 Msa0044780:three_prime_UTR
AGAGGATGGACAACAGGTTC+TGG 0.304476 1_1:-76374517 Msa0044780:CDS
TCCTTGCCAACAGCAGGAAC+AGG 0.348441 1_1:+76374481 None:intergenic
GTTGGCAAGGATGGCCAATC+TGG 0.368867 1_1:-76374469 Msa0044780:CDS
TACATTGGAAAGAGGGGAAA+TGG 0.383769 1_1:+76374697 None:intergenic
GTTCCTGCTGTTGGCAAGGA+TGG 0.384950 1_1:-76374478 Msa0044780:CDS
TGGCAATTCACTCATGTAAC+GGG 0.396746 1_1:+76373358 None:intergenic
CCCTGTTCCTGCTGTTGGCA+AGG 0.400986 1_1:-76374482 Msa0044780:CDS
TGATCTCAAGTTCAGGTTCA+TGG 0.426042 1_1:-76373413 Msa0044780:CDS
TCAGGATGCGGCGATGGGAC+TGG 0.430291 1_1:-76374560 Msa0044780:intron
AGCGATGAGCATCCTTCGCC+TGG 0.430343 1_1:+76374399 None:intergenic
AAGGTTGAAGTTGAGTTCGT+TGG 0.430732 1_1:+76374748 None:intergenic
TGTATTGTTGTGTTTGTGTT+GGG 0.441366 1_1:-76375127 None:intergenic
CTTCTCTTCATCTTGTGAGA+TGG 0.447042 1_1:-76373110 Msa0044780:three_prime_UTR
GATGGGATGATCTCAAGTTC+AGG 0.447144 1_1:-76373420 Msa0044780:CDS
AAACAGCGATTAGTGGGAAC+TGG 0.455375 1_1:+76374722 None:intergenic
TCTTGTTGAAGAAGGGAAGA+TGG 0.460295 1_1:+76374979 None:intergenic
GTGTATTGTTGTGTTTGTGT+TGG 0.461085 1_1:-76375128 None:intergenic
AAAATATATGCTCCATAAGC+TGG 0.465894 1_1:+76373338 None:intergenic
GTGGGATCAGGATGCGGCGA+TGG 0.473920 1_1:-76374566 Msa0044780:intron
GAGGATGGACAACAGGTTCT+GGG 0.476565 1_1:-76374516 Msa0044780:CDS
ACAGGTAGAGGATGGACAAC+AGG 0.485934 1_1:-76374523 Msa0044780:CDS
AGTAGTTCGCTGGCCACAAA+TGG 0.495726 1_1:+76374366 None:intergenic
TGGCCATCCTTGCCAACAGC+AGG 0.511703 1_1:+76374475 None:intergenic
CTGGTGTTGAGTGCAGCAAC+AGG 0.517261 1_1:-76374541 Msa0044780:CDS
TTGAGTGCAGCAACAGGTAG+AGG 0.519099 1_1:-76374535 Msa0044780:CDS
AGAGGGTAGACGAAAGTGAA+AGG 0.519884 1_1:+76374913 None:intergenic
GATGATGTTCTTGTTGAAGA+AGG 0.523407 1_1:+76374971 None:intergenic
TGGGATCAGGATGCGGCGAT+GGG 0.524036 1_1:-76374565 Msa0044780:intron
TTGGCAAGGATGGCCAATCT+GGG 0.529425 1_1:-76374468 Msa0044780:CDS
AATCCTCATGCTTACACTGA+TGG 0.541011 1_1:-76374334 Msa0044780:CDS
AATGGAGAAACAGCGATTAG+TGG 0.545981 1_1:+76374715 None:intergenic
AAATATTGTCAGTCCCAGAT+TGG 0.547211 1_1:+76374455 None:intergenic
GATTAGTGGGAACTGGAGAA+AGG 0.549189 1_1:+76374729 None:intergenic
GAAGGGAAGATGGAGAAAGA+AGG 0.549957 1_1:+76374989 None:intergenic
CACTCTTCACTAAATCTCCC+AGG 0.555459 1_1:-76374417 Msa0044780:CDS
TTAAGTATAAAGGTCCTGGA+TGG 0.555752 1_1:-76373438 Msa0044780:CDS
GAGAATCAATCTGATGATGA+TGG 0.556875 1_1:-76375050 Msa0044780:exon
ATGATGTTCTTGTTGAAGAA+GGG 0.560562 1_1:+76374972 None:intergenic
CTGGCAATTCACTCATGTAA+CGG 0.562439 1_1:+76373357 None:intergenic
TCACTAAATCTCCCAGGCGA+AGG 0.574635 1_1:-76374411 Msa0044780:CDS
GAAGAGTGACCATGGGAAAG+TGG 0.574914 1_1:+76374432 None:intergenic
AACTTGAGATCATCCCATCC+AGG 0.575509 1_1:+76373424 None:intergenic
TAAGTATAAAGGTCCTGGAT+GGG 0.576355 1_1:-76373437 Msa0044780:CDS
ACAATATTTCCACTTTCCCA+TGG 0.577693 1_1:-76374441 Msa0044780:CDS
ACATTACATACATTGGAAAG+AGG 0.577849 1_1:+76374689 None:intergenic
CCTTGCCAACAGCAGGAACA+GGG 0.581470 1_1:+76374482 None:intergenic
CATTACATACATTGGAAAGA+GGG 0.582616 1_1:+76374690 None:intergenic
ATGGAGAAACAGCGATTAGT+GGG 0.587217 1_1:+76374716 None:intergenic
GTGCAGCAACAGGTAGAGGA+TGG 0.602472 1_1:-76374531 Msa0044780:CDS
ATTTAGTGAAGAGTGACCAT+GGG 0.605907 1_1:+76374425 None:intergenic
GATTTAGTGAAGAGTGACCA+TGG 0.607466 1_1:+76374424 None:intergenic
ATGGACAACAGGTTCTGGGA+TGG 0.609246 1_1:-76374512 Msa0044780:CDS
ACAACAGGTTCTGGGATGGA+AGG 0.611576 1_1:-76374508 Msa0044780:CDS
TAATAGCGCGAGTAGTTCGC+TGG 0.613634 1_1:+76374356 None:intergenic
AGAATACGGACGCTTAGAAG+AGG 0.614308 1_1:+76374895 None:intergenic
CAATGCGTATCATAAGCTTG+TGG 0.615319 1_1:-76373509 Msa0044780:CDS
GAATACGGACGCTTAGAAGA+GGG 0.616215 1_1:+76374896 None:intergenic
ATTACATACATTGGAAAGAG+GGG 0.621264 1_1:+76374691 None:intergenic
GCGATGAGCATCCTTCGCCT+GGG 0.627050 1_1:+76374400 None:intergenic
ATTCCTTATATGATGATCAG+AGG 0.628474 1_1:+76373312 None:intergenic
TTGCCAACAGCAGGAACAGG+GGG 0.652495 1_1:+76374484 None:intergenic
GTGCCATCAGTGTAAGCATG+AGG 0.652803 1_1:+76374331 None:intergenic
CTTGCCAACAGCAGGAACAG+GGG 0.682731 1_1:+76374483 None:intergenic
GGCAATTCACTCATGTAACG+GGG 0.702863 1_1:+76373359 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATAGTAAAATTAATGA+TGG + chr1_1:76373365-76373384 None:intergenic 10.0%
!!! TATATTTTTTTTTTCATTTC+AGG - chr1_1:76373381-76373400 Msa0044780:CDS 10.0%
!! TATAATAGTAAAATTAATGA+TGG + chr1_1:76373365-76373384 None:intergenic 10.0%
!!! TATATTTTTTTTTTCATTTC+AGG - chr1_1:76373381-76373400 Msa0044780:CDS 10.0%
!! ATATAAAAATAGGGAAATTA+GGG + chr1_1:76373543-76373562 None:intergenic 15.0%
!! TAAATTCTGATTATAATTTG+TGG - chr1_1:76373611-76373630 Msa0044780:intron 15.0%
!!! AAATTCTGATTATAATTTGT+GGG - chr1_1:76373612-76373631 Msa0044780:intron 15.0%
!! GATCATGTTTAAATTATAAA+TGG + chr1_1:76374144-76374163 None:intergenic 15.0%
!! TTATAATTTAAACATGATCT+TGG - chr1_1:76374145-76374164 Msa0044780:intron 15.0%
!!! AATTCAAGTTTTAAGTATAA+AGG - chr1_1:76374748-76374767 Msa0044780:CDS 15.0%
!! ATATAAAAATAGGGAAATTA+GGG + chr1_1:76373543-76373562 None:intergenic 15.0%
!! TAAATTCTGATTATAATTTG+TGG - chr1_1:76373611-76373630 Msa0044780:intron 15.0%
!!! AAATTCTGATTATAATTTGT+GGG - chr1_1:76373612-76373631 Msa0044780:intron 15.0%
!! GATCATGTTTAAATTATAAA+TGG + chr1_1:76374144-76374163 None:intergenic 15.0%
!! TTATAATTTAAACATGATCT+TGG - chr1_1:76374145-76374164 Msa0044780:intron 15.0%
!!! AATTCAAGTTTTAAGTATAA+AGG - chr1_1:76374748-76374767 Msa0044780:CDS 15.0%
!! CATATAAAAATAGGGAAATT+AGG + chr1_1:76373544-76373563 None:intergenic 20.0%
!! AAAAATTTCATTGCAAGAAA+GGG - chr1_1:76374543-76374562 Msa0044780:CDS 20.0%
!! CATATAAAAATAGGGAAATT+AGG + chr1_1:76373544-76373563 None:intergenic 20.0%
!! AAAAATTTCATTGCAAGAAA+GGG - chr1_1:76374543-76374562 Msa0044780:CDS 20.0%
!!! TTCCCTATTTTTATATGTGA+TGG - chr1_1:76373547-76373566 Msa0044780:intron 25.0%
! GTCCATCACATATAAAAATA+GGG + chr1_1:76373552-76373571 None:intergenic 25.0%
!!! TGTTTTTGTTCAGGTAATAA+TGG - chr1_1:76373888-76373907 Msa0044780:intron 25.0%
!! TCAGGTAATAATGGTTTTTA+AGG - chr1_1:76373897-76373916 Msa0044780:intron 25.0%
!!! ATAATGGTTTTTAAGGAAGT+AGG - chr1_1:76373904-76373923 Msa0044780:intron 25.0%
! ATTATTTATGTGAACTGTCA+TGG - chr1_1:76374038-76374057 Msa0044780:intron 25.0%
! TAAATTATAAATGGCATGTC+CGG + chr1_1:76374135-76374154 None:intergenic 25.0%
!! TGAAGGTTTTTAAATTCAAC+CGG + chr1_1:76374485-76374504 None:intergenic 25.0%
! GAAAAATTTCATTGCAAGAA+AGG - chr1_1:76374542-76374561 Msa0044780:CDS 25.0%
! TGCTTAATAGTAAAAATGTC+AGG - chr1_1:76374944-76374963 Msa0044780:CDS 25.0%
! GCTTAATAGTAAAAATGTCA+GGG - chr1_1:76374945-76374964 Msa0044780:CDS 25.0%
! CTTAATAGTAAAAATGTCAG+GGG - chr1_1:76374946-76374965 Msa0044780:CDS 25.0%
! TAAAAATATCCCAACACAAA+CGG + chr1_1:76373081-76373100 None:intergenic 25.0%
!!! TTCCCTATTTTTATATGTGA+TGG - chr1_1:76373547-76373566 Msa0044780:intron 25.0%
! GTCCATCACATATAAAAATA+GGG + chr1_1:76373552-76373571 None:intergenic 25.0%
!!! TGTTTTTGTTCAGGTAATAA+TGG - chr1_1:76373888-76373907 Msa0044780:intron 25.0%
!! TCAGGTAATAATGGTTTTTA+AGG - chr1_1:76373897-76373916 Msa0044780:intron 25.0%
!!! ATAATGGTTTTTAAGGAAGT+AGG - chr1_1:76373904-76373923 Msa0044780:intron 25.0%
! ATTATTTATGTGAACTGTCA+TGG - chr1_1:76374038-76374057 Msa0044780:intron 25.0%
! TAAATTATAAATGGCATGTC+CGG + chr1_1:76374135-76374154 None:intergenic 25.0%
!! TGAAGGTTTTTAAATTCAAC+CGG + chr1_1:76374485-76374504 None:intergenic 25.0%
! GAAAAATTTCATTGCAAGAA+AGG - chr1_1:76374542-76374561 Msa0044780:CDS 25.0%
! TGCTTAATAGTAAAAATGTC+AGG - chr1_1:76374944-76374963 Msa0044780:CDS 25.0%
! GCTTAATAGTAAAAATGTCA+GGG - chr1_1:76374945-76374964 Msa0044780:CDS 25.0%
! CTTAATAGTAAAAATGTCAG+GGG - chr1_1:76374946-76374965 Msa0044780:CDS 25.0%
!!! TTGTGTTGGGATATTTTTAG+AGG - chr1_1:76373082-76373101 Msa0044780:three_prime_UTR 30.0%
!!! ATATTTTTAGAGGTGAAGAG+AGG - chr1_1:76373092-76373111 Msa0044780:three_prime_UTR 30.0%
ATGATGTTCTTGTTGAAGAA+GGG + chr1_1:76373227-76373246 None:intergenic 30.0%
ATTACATACATTGGAAAGAG+GGG + chr1_1:76373508-76373527 None:intergenic 30.0%
CATTACATACATTGGAAAGA+GGG + chr1_1:76373509-76373528 None:intergenic 30.0%
ACATTACATACATTGGAAAG+AGG + chr1_1:76373510-76373529 None:intergenic 30.0%
GAGAGAAACATTACATACAT+TGG + chr1_1:76373517-76373536 None:intergenic 30.0%
CGTCCATCACATATAAAAAT+AGG + chr1_1:76373553-76373572 None:intergenic 30.0%
! TGATTATAATTTGTGGGATC+AGG - chr1_1:76373618-76373637 Msa0044780:intron 30.0%
! ATTTTACCGTTTGAGAGTTT+TGG + chr1_1:76373974-76373993 None:intergenic 30.0%
CTGATAGTTGTCATGAATAA+GGG - chr1_1:76374104-76374123 Msa0044780:intron 30.0%
TGATAGTTGTCATGAATAAG+GGG - chr1_1:76374105-76374124 Msa0044780:intron 30.0%
AGTTAAGTTTCAAACTCCAA+TGG + chr1_1:76374184-76374203 None:intergenic 30.0%
ATGTCATGTCCAATTTCTAA+TGG - chr1_1:76374601-76374620 Msa0044780:intron 30.0%
CAATGGGAAACACAAAAATA+TGG + chr1_1:76374649-76374668 None:intergenic 30.0%
! ATTTTTGTGTTTCCCATTGT+TGG - chr1_1:76374650-76374669 Msa0044780:intron 30.0%
!!! AGTTTTAAGTATAAAGGTCC+TGG - chr1_1:76374754-76374773 Msa0044780:CDS 30.0%
AAAATATATGCTCCATAAGC+TGG + chr1_1:76374861-76374880 None:intergenic 30.0%
ATTCCTTATATGATGATCAG+AGG + chr1_1:76374887-76374906 None:intergenic 30.0%
!!! TTGTGTTGGGATATTTTTAG+AGG - chr1_1:76373082-76373101 Msa0044780:three_prime_UTR 30.0%
!!! ATATTTTTAGAGGTGAAGAG+AGG - chr1_1:76373092-76373111 Msa0044780:three_prime_UTR 30.0%
ATGATGTTCTTGTTGAAGAA+GGG + chr1_1:76373227-76373246 None:intergenic 30.0%
ATTACATACATTGGAAAGAG+GGG + chr1_1:76373508-76373527 None:intergenic 30.0%
CATTACATACATTGGAAAGA+GGG + chr1_1:76373509-76373528 None:intergenic 30.0%
ACATTACATACATTGGAAAG+AGG + chr1_1:76373510-76373529 None:intergenic 30.0%
GAGAGAAACATTACATACAT+TGG + chr1_1:76373517-76373536 None:intergenic 30.0%
CGTCCATCACATATAAAAAT+AGG + chr1_1:76373553-76373572 None:intergenic 30.0%
! TGATTATAATTTGTGGGATC+AGG - chr1_1:76373618-76373637 Msa0044780:intron 30.0%
! ATTTTACCGTTTGAGAGTTT+TGG + chr1_1:76373974-76373993 None:intergenic 30.0%
CTGATAGTTGTCATGAATAA+GGG - chr1_1:76374104-76374123 Msa0044780:intron 30.0%
TGATAGTTGTCATGAATAAG+GGG - chr1_1:76374105-76374124 Msa0044780:intron 30.0%
AGTTAAGTTTCAAACTCCAA+TGG + chr1_1:76374184-76374203 None:intergenic 30.0%
ATGTCATGTCCAATTTCTAA+TGG - chr1_1:76374601-76374620 Msa0044780:intron 30.0%
CAATGGGAAACACAAAAATA+TGG + chr1_1:76374649-76374668 None:intergenic 30.0%
! ATTTTTGTGTTTCCCATTGT+TGG - chr1_1:76374650-76374669 Msa0044780:intron 30.0%
!!! AGTTTTAAGTATAAAGGTCC+TGG - chr1_1:76374754-76374773 Msa0044780:CDS 30.0%
AAAATATATGCTCCATAAGC+TGG + chr1_1:76374861-76374880 None:intergenic 30.0%
ATTCCTTATATGATGATCAG+AGG + chr1_1:76374887-76374906 None:intergenic 30.0%
! GAGAATCAATCTGATGATGA+TGG - chr1_1:76373146-76373165 Msa0044780:three_prime_UTR 35.0%
GATGATGTTCTTGTTGAAGA+AGG + chr1_1:76373228-76373247 None:intergenic 35.0%
! ACGAAAGTGAAAGGTTTTCT+TGG + chr1_1:76373277-76373296 None:intergenic 35.0%
GATTGATCGAGAAGAGAATA+CGG + chr1_1:76373318-76373337 None:intergenic 35.0%
!! TTTTTCATTTCAGGTGACGA+TGG - chr1_1:76373390-76373409 Msa0044780:CDS 35.0%
AAATATTGTCAGTCCCAGAT+TGG + chr1_1:76373744-76373763 None:intergenic 35.0%
ACAATATTTCCACTTTCCCA+TGG - chr1_1:76373755-76373774 Msa0044780:intron 35.0%
ATTTAGTGAAGAGTGACCAT+GGG + chr1_1:76373774-76373793 None:intergenic 35.0%
! GCTTTTACTTGTACCATTTG+TGG - chr1_1:76373817-76373836 Msa0044780:intron 35.0%
TGCAACATTCGTAACAAGTT+TGG + chr1_1:76373941-76373960 None:intergenic 35.0%
ATCTGACCAAAACTCTCAAA+CGG - chr1_1:76373965-76373984 Msa0044780:intron 35.0%
GCTGATAGTTGTCATGAATA+AGG - chr1_1:76374103-76374122 Msa0044780:intron 35.0%
TGGAATAACAAGCTAACCAT+TGG - chr1_1:76374165-76374184 Msa0044780:intron 35.0%
ATCAGCTTTCCTAATTCTCA+GGG + chr1_1:76374257-76374276 None:intergenic 35.0%
TATCAGCTTTCCTAATTCTC+AGG + chr1_1:76374258-76374277 None:intergenic 35.0%
TGAGAATTAGGAAAGCTGAT+AGG - chr1_1:76374257-76374276 Msa0044780:intron 35.0%
! GTTTTTAAATTCAACCGGCA+GGG + chr1_1:76374480-76374499 None:intergenic 35.0%
CATCAGTCTCCATTAGAAAT+TGG + chr1_1:76374613-76374632 None:intergenic 35.0%
CAATTTCTAATGGAGACTGA+TGG - chr1_1:76374611-76374630 Msa0044780:intron 35.0%
TTAAGTATAAAGGTCCTGGA+TGG - chr1_1:76374758-76374777 Msa0044780:CDS 35.0%
TAAGTATAAAGGTCCTGGAT+GGG - chr1_1:76374759-76374778 Msa0044780:CDS 35.0%
! GAGAATCAATCTGATGATGA+TGG - chr1_1:76373146-76373165 Msa0044780:three_prime_UTR 35.0%
GATGATGTTCTTGTTGAAGA+AGG + chr1_1:76373228-76373247 None:intergenic 35.0%
! ACGAAAGTGAAAGGTTTTCT+TGG + chr1_1:76373277-76373296 None:intergenic 35.0%
GATTGATCGAGAAGAGAATA+CGG + chr1_1:76373318-76373337 None:intergenic 35.0%
!! TTTTTCATTTCAGGTGACGA+TGG - chr1_1:76373390-76373409 Msa0044780:CDS 35.0%
AAATATTGTCAGTCCCAGAT+TGG + chr1_1:76373744-76373763 None:intergenic 35.0%
ACAATATTTCCACTTTCCCA+TGG - chr1_1:76373755-76373774 Msa0044780:intron 35.0%
ATTTAGTGAAGAGTGACCAT+GGG + chr1_1:76373774-76373793 None:intergenic 35.0%
! GCTTTTACTTGTACCATTTG+TGG - chr1_1:76373817-76373836 Msa0044780:intron 35.0%
TGCAACATTCGTAACAAGTT+TGG + chr1_1:76373941-76373960 None:intergenic 35.0%
ATCTGACCAAAACTCTCAAA+CGG - chr1_1:76373965-76373984 Msa0044780:intron 35.0%
GCTGATAGTTGTCATGAATA+AGG - chr1_1:76374103-76374122 Msa0044780:intron 35.0%
TGGAATAACAAGCTAACCAT+TGG - chr1_1:76374165-76374184 Msa0044780:intron 35.0%
ATCAGCTTTCCTAATTCTCA+GGG + chr1_1:76374257-76374276 None:intergenic 35.0%
TATCAGCTTTCCTAATTCTC+AGG + chr1_1:76374258-76374277 None:intergenic 35.0%
TGAGAATTAGGAAAGCTGAT+AGG - chr1_1:76374257-76374276 Msa0044780:intron 35.0%
! GTTTTTAAATTCAACCGGCA+GGG + chr1_1:76374480-76374499 None:intergenic 35.0%
CATCAGTCTCCATTAGAAAT+TGG + chr1_1:76374613-76374632 None:intergenic 35.0%
CAATTTCTAATGGAGACTGA+TGG - chr1_1:76374611-76374630 Msa0044780:intron 35.0%
TTAAGTATAAAGGTCCTGGA+TGG - chr1_1:76374758-76374777 Msa0044780:CDS 35.0%
TAAGTATAAAGGTCCTGGAT+GGG - chr1_1:76374759-76374778 Msa0044780:CDS 35.0%
!! TTTTTAGAGGTGAAGAGAGG+AGG - chr1_1:76373095-76373114 Msa0044780:three_prime_UTR 40.0%
TCTTGTTGAAGAAGGGAAGA+TGG + chr1_1:76373220-76373239 None:intergenic 40.0%
AAGGTTGAAGTTGAGTTCGT+TGG + chr1_1:76373451-76373470 None:intergenic 40.0%
ATGGAGAAACAGCGATTAGT+GGG + chr1_1:76373483-76373502 None:intergenic 40.0%
AATGGAGAAACAGCGATTAG+TGG + chr1_1:76373484-76373503 None:intergenic 40.0%
TACATTGGAAAGAGGGGAAA+TGG + chr1_1:76373502-76373521 None:intergenic 40.0%
! TAATTTGTGGGATCAGGATG+CGG - chr1_1:76373624-76373643 Msa0044780:intron 40.0%
GATTTAGTGAAGAGTGACCA+TGG + chr1_1:76373775-76373794 None:intergenic 40.0%
AATCCTCATGCTTACACTGA+TGG - chr1_1:76373862-76373881 Msa0044780:intron 40.0%
!!! TGATGGCACTGTTTTTGTTC+AGG - chr1_1:76373879-76373898 Msa0044780:intron 40.0%
! TGTCATGGATTGCATAAGAC+AGG - chr1_1:76374053-76374072 Msa0044780:intron 40.0%
ACTCGAAGTCTAGCATCATA+TGG + chr1_1:76374231-76374250 None:intergenic 40.0%
TATGATGCTAGACTTCGAGT+TGG - chr1_1:76374231-76374250 Msa0044780:intron 40.0%
AAAATGTACTTCAACCCTGC+CGG - chr1_1:76374463-76374482 Msa0044780:CDS 40.0%
! GGTTTTTAAATTCAACCGGC+AGG + chr1_1:76374481-76374500 None:intergenic 40.0%
AAAGACTGACGTCGATATTC+TGG - chr1_1:76374516-76374535 Msa0044780:CDS 40.0%
TTCACAACACTGCCAACAAT+GGG + chr1_1:76374665-76374684 None:intergenic 40.0%
ATTCACAACACTGCCAACAA+TGG + chr1_1:76374666-76374685 None:intergenic 40.0%
CAATGCGTATCATAAGCTTG+TGG - chr1_1:76374687-76374706 Msa0044780:intron 40.0%
! GGATCACTTGAACTTGTTTC+AGG - chr1_1:76374708-76374727 Msa0044780:CDS 40.0%
! TGATCTCAAGTTCAGGTTCA+TGG - chr1_1:76374783-76374802 Msa0044780:CDS 40.0%
TGGCAATTCACTCATGTAAC+GGG + chr1_1:76374841-76374860 None:intergenic 40.0%
CTGGCAATTCACTCATGTAA+CGG + chr1_1:76374842-76374861 None:intergenic 40.0%
ATGAGTGAATTGCCAGCTTA+TGG - chr1_1:76374846-76374865 Msa0044780:intron 40.0%
CTGCCTCTGATCATCATATA+AGG - chr1_1:76374881-76374900 Msa0044780:intron 40.0%
CTTCTCTTCATCTTGTGAGA+TGG - chr1_1:76375086-76375105 Msa0044780:five_prime_UTR 40.0%
CTTCATCTTGTGAGATGGTT+AGG - chr1_1:76375091-76375110 Msa0044780:five_prime_UTR 40.0%
!! TTTTTAGAGGTGAAGAGAGG+AGG - chr1_1:76373095-76373114 Msa0044780:three_prime_UTR 40.0%
TCTTGTTGAAGAAGGGAAGA+TGG + chr1_1:76373220-76373239 None:intergenic 40.0%
AAGGTTGAAGTTGAGTTCGT+TGG + chr1_1:76373451-76373470 None:intergenic 40.0%
ATGGAGAAACAGCGATTAGT+GGG + chr1_1:76373483-76373502 None:intergenic 40.0%
AATGGAGAAACAGCGATTAG+TGG + chr1_1:76373484-76373503 None:intergenic 40.0%
TACATTGGAAAGAGGGGAAA+TGG + chr1_1:76373502-76373521 None:intergenic 40.0%
! TAATTTGTGGGATCAGGATG+CGG - chr1_1:76373624-76373643 Msa0044780:intron 40.0%
GATTTAGTGAAGAGTGACCA+TGG + chr1_1:76373775-76373794 None:intergenic 40.0%
AATCCTCATGCTTACACTGA+TGG - chr1_1:76373862-76373881 Msa0044780:intron 40.0%
!!! TGATGGCACTGTTTTTGTTC+AGG - chr1_1:76373879-76373898 Msa0044780:intron 40.0%
! TGTCATGGATTGCATAAGAC+AGG - chr1_1:76374053-76374072 Msa0044780:intron 40.0%
ACTCGAAGTCTAGCATCATA+TGG + chr1_1:76374231-76374250 None:intergenic 40.0%
TATGATGCTAGACTTCGAGT+TGG - chr1_1:76374231-76374250 Msa0044780:intron 40.0%
AAAATGTACTTCAACCCTGC+CGG - chr1_1:76374463-76374482 Msa0044780:CDS 40.0%
! GGTTTTTAAATTCAACCGGC+AGG + chr1_1:76374481-76374500 None:intergenic 40.0%
AAAGACTGACGTCGATATTC+TGG - chr1_1:76374516-76374535 Msa0044780:CDS 40.0%
TTCACAACACTGCCAACAAT+GGG + chr1_1:76374665-76374684 None:intergenic 40.0%
ATTCACAACACTGCCAACAA+TGG + chr1_1:76374666-76374685 None:intergenic 40.0%
CAATGCGTATCATAAGCTTG+TGG - chr1_1:76374687-76374706 Msa0044780:intron 40.0%
! GGATCACTTGAACTTGTTTC+AGG - chr1_1:76374708-76374727 Msa0044780:CDS 40.0%
! TGATCTCAAGTTCAGGTTCA+TGG - chr1_1:76374783-76374802 Msa0044780:CDS 40.0%
TGGCAATTCACTCATGTAAC+GGG + chr1_1:76374841-76374860 None:intergenic 40.0%
CTGGCAATTCACTCATGTAA+CGG + chr1_1:76374842-76374861 None:intergenic 40.0%
ATGAGTGAATTGCCAGCTTA+TGG - chr1_1:76374846-76374865 Msa0044780:intron 40.0%
CTGCCTCTGATCATCATATA+AGG - chr1_1:76374881-76374900 Msa0044780:intron 40.0%
CTTCTCTTCATCTTGTGAGA+TGG - chr1_1:76375086-76375105 Msa0044780:five_prime_UTR 40.0%
CTTCATCTTGTGAGATGGTT+AGG - chr1_1:76375091-76375110 Msa0044780:five_prime_UTR 40.0%
GAAGGGAAGATGGAGAAAGA+AGG + chr1_1:76373210-76373229 None:intergenic 45.0%
AGAGGGTAGACGAAAGTGAA+AGG + chr1_1:76373286-76373305 None:intergenic 45.0%
GAATACGGACGCTTAGAAGA+GGG + chr1_1:76373303-76373322 None:intergenic 45.0%
AGAATACGGACGCTTAGAAG+AGG + chr1_1:76373304-76373323 None:intergenic 45.0%
GATTAGTGGGAACTGGAGAA+AGG + chr1_1:76373470-76373489 None:intergenic 45.0%
AAACAGCGATTAGTGGGAAC+TGG + chr1_1:76373477-76373496 None:intergenic 45.0%
CACTCTTCACTAAATCTCCC+AGG - chr1_1:76373779-76373798 Msa0044780:intron 45.0%
GAACCAAACTTTGAGCAGCT+CGG + chr1_1:76374017-76374036 None:intergenic 45.0%
GTCATGAATAAGGGGCAATC+CGG - chr1_1:76374113-76374132 Msa0044780:intron 45.0%
!!! GTCTTTTAAGAGCGGGTTGA+AGG + chr1_1:76374502-76374521 None:intergenic 45.0%
!! GACGTCAGTCTTTTAAGAGC+GGG + chr1_1:76374509-76374528 None:intergenic 45.0%
!! CGACGTCAGTCTTTTAAGAG+CGG + chr1_1:76374510-76374529 None:intergenic 45.0%
AACTTGAGATCATCCCATCC+AGG + chr1_1:76374775-76374794 None:intergenic 45.0%
GATGGGATGATCTCAAGTTC+AGG - chr1_1:76374776-76374795 Msa0044780:CDS 45.0%
GGCAATTCACTCATGTAACG+GGG + chr1_1:76374840-76374859 None:intergenic 45.0%
GAAGGGAAGATGGAGAAAGA+AGG + chr1_1:76373210-76373229 None:intergenic 45.0%
AGAGGGTAGACGAAAGTGAA+AGG + chr1_1:76373286-76373305 None:intergenic 45.0%
GAATACGGACGCTTAGAAGA+GGG + chr1_1:76373303-76373322 None:intergenic 45.0%
AGAATACGGACGCTTAGAAG+AGG + chr1_1:76373304-76373323 None:intergenic 45.0%
GATTAGTGGGAACTGGAGAA+AGG + chr1_1:76373470-76373489 None:intergenic 45.0%
AAACAGCGATTAGTGGGAAC+TGG + chr1_1:76373477-76373496 None:intergenic 45.0%
CACTCTTCACTAAATCTCCC+AGG - chr1_1:76373779-76373798 Msa0044780:intron 45.0%
GAACCAAACTTTGAGCAGCT+CGG + chr1_1:76374017-76374036 None:intergenic 45.0%
GTCATGAATAAGGGGCAATC+CGG - chr1_1:76374113-76374132 Msa0044780:intron 45.0%
!!! GTCTTTTAAGAGCGGGTTGA+AGG + chr1_1:76374502-76374521 None:intergenic 45.0%
!! GACGTCAGTCTTTTAAGAGC+GGG + chr1_1:76374509-76374528 None:intergenic 45.0%
!! CGACGTCAGTCTTTTAAGAG+CGG + chr1_1:76374510-76374529 None:intergenic 45.0%
AACTTGAGATCATCCCATCC+AGG + chr1_1:76374775-76374794 None:intergenic 45.0%
GATGGGATGATCTCAAGTTC+AGG - chr1_1:76374776-76374795 Msa0044780:CDS 45.0%
GGCAATTCACTCATGTAACG+GGG + chr1_1:76374840-76374859 None:intergenic 45.0%
!!! AAATTTTTTTTTTTTTTTGA+AGG - chr1_1:76374312-76374331 Msa0044780:intron 5.0%
!!! AAATTTTTTTTTTTTTTTGA+AGG - chr1_1:76374312-76374331 Msa0044780:intron 5.0%
TTGAGTGCAGCAACAGGTAG+AGG - chr1_1:76373661-76373680 Msa0044780:intron 50.0%
ACAGGTAGAGGATGGACAAC+AGG - chr1_1:76373673-76373692 Msa0044780:intron 50.0%
AGAGGATGGACAACAGGTTC+TGG - chr1_1:76373679-76373698 Msa0044780:intron 50.0%
GAGGATGGACAACAGGTTCT+GGG - chr1_1:76373680-76373699 Msa0044780:intron 50.0%
!! ATGGACAACAGGTTCTGGGA+TGG - chr1_1:76373684-76373703 Msa0044780:intron 50.0%
!! ACAACAGGTTCTGGGATGGA+AGG - chr1_1:76373688-76373707 Msa0044780:intron 50.0%
TTGGCAAGGATGGCCAATCT+GGG - chr1_1:76373728-76373747 Msa0044780:intron 50.0%
GAAGAGTGACCATGGGAAAG+TGG + chr1_1:76373767-76373786 None:intergenic 50.0%
TCACTAAATCTCCCAGGCGA+AGG - chr1_1:76373785-76373804 Msa0044780:intron 50.0%
AGTAGTTCGCTGGCCACAAA+TGG + chr1_1:76373833-76373852 None:intergenic 50.0%
TAATAGCGCGAGTAGTTCGC+TGG + chr1_1:76373843-76373862 None:intergenic 50.0%
GTGCCATCAGTGTAAGCATG+AGG + chr1_1:76373868-76373887 None:intergenic 50.0%
TAGCCGAGCTGCTCAAAGTT+TGG - chr1_1:76374011-76374030 Msa0044780:intron 50.0%
!! TCGAGTTGGCCCTGAGAATT+AGG - chr1_1:76374245-76374264 Msa0044780:intron 50.0%
TTGAGTGCAGCAACAGGTAG+AGG - chr1_1:76373661-76373680 Msa0044780:intron 50.0%
ACAGGTAGAGGATGGACAAC+AGG - chr1_1:76373673-76373692 Msa0044780:intron 50.0%
AGAGGATGGACAACAGGTTC+TGG - chr1_1:76373679-76373698 Msa0044780:intron 50.0%
GAGGATGGACAACAGGTTCT+GGG - chr1_1:76373680-76373699 Msa0044780:intron 50.0%
!! ATGGACAACAGGTTCTGGGA+TGG - chr1_1:76373684-76373703 Msa0044780:intron 50.0%
!! ACAACAGGTTCTGGGATGGA+AGG - chr1_1:76373688-76373707 Msa0044780:intron 50.0%
TTGGCAAGGATGGCCAATCT+GGG - chr1_1:76373728-76373747 Msa0044780:intron 50.0%
GAAGAGTGACCATGGGAAAG+TGG + chr1_1:76373767-76373786 None:intergenic 50.0%
TCACTAAATCTCCCAGGCGA+AGG - chr1_1:76373785-76373804 Msa0044780:intron 50.0%
AGTAGTTCGCTGGCCACAAA+TGG + chr1_1:76373833-76373852 None:intergenic 50.0%
TAATAGCGCGAGTAGTTCGC+TGG + chr1_1:76373843-76373862 None:intergenic 50.0%
GTGCCATCAGTGTAAGCATG+AGG + chr1_1:76373868-76373887 None:intergenic 50.0%
TAGCCGAGCTGCTCAAAGTT+TGG - chr1_1:76374011-76374030 Msa0044780:intron 50.0%
!! TCGAGTTGGCCCTGAGAATT+AGG - chr1_1:76374245-76374264 Msa0044780:intron 50.0%
! CTGGTGTTGAGTGCAGCAAC+AGG - chr1_1:76373655-76373674 Msa0044780:intron 55.0%
GTGCAGCAACAGGTAGAGGA+TGG - chr1_1:76373665-76373684 Msa0044780:intron 55.0%
TTGCCAACAGCAGGAACAGG+GGG + chr1_1:76373715-76373734 None:intergenic 55.0%
CTTGCCAACAGCAGGAACAG+GGG + chr1_1:76373716-76373735 None:intergenic 55.0%
CCTTGCCAACAGCAGGAACA+GGG + chr1_1:76373717-76373736 None:intergenic 55.0%
TCCTTGCCAACAGCAGGAAC+AGG + chr1_1:76373718-76373737 None:intergenic 55.0%
GTTCCTGCTGTTGGCAAGGA+TGG - chr1_1:76373718-76373737 Msa0044780:intron 55.0%
GTTGGCAAGGATGGCCAATC+TGG - chr1_1:76373727-76373746 Msa0044780:intron 55.0%
! CTGGTGTTGAGTGCAGCAAC+AGG - chr1_1:76373655-76373674 Msa0044780:intron 55.0%
GTGCAGCAACAGGTAGAGGA+TGG - chr1_1:76373665-76373684 Msa0044780:intron 55.0%
TTGCCAACAGCAGGAACAGG+GGG + chr1_1:76373715-76373734 None:intergenic 55.0%
CTTGCCAACAGCAGGAACAG+GGG + chr1_1:76373716-76373735 None:intergenic 55.0%
CCTTGCCAACAGCAGGAACA+GGG + chr1_1:76373717-76373736 None:intergenic 55.0%
TCCTTGCCAACAGCAGGAAC+AGG + chr1_1:76373718-76373737 None:intergenic 55.0%
GTTCCTGCTGTTGGCAAGGA+TGG - chr1_1:76373718-76373737 Msa0044780:intron 55.0%
GTTGGCAAGGATGGCCAATC+TGG - chr1_1:76373727-76373746 Msa0044780:intron 55.0%
TGGGATCAGGATGCGGCGAT+GGG - chr1_1:76373631-76373650 Msa0044780:intron 60.0%
CCCTGTTCCTGCTGTTGGCA+AGG - chr1_1:76373714-76373733 Msa0044780:intron 60.0%
TGGCCATCCTTGCCAACAGC+AGG + chr1_1:76373724-76373743 None:intergenic 60.0%
GCGATGAGCATCCTTCGCCT+GGG + chr1_1:76373799-76373818 None:intergenic 60.0%
AGCGATGAGCATCCTTCGCC+TGG + chr1_1:76373800-76373819 None:intergenic 60.0%
TGGGATCAGGATGCGGCGAT+GGG - chr1_1:76373631-76373650 Msa0044780:intron 60.0%
CCCTGTTCCTGCTGTTGGCA+AGG - chr1_1:76373714-76373733 Msa0044780:intron 60.0%
TGGCCATCCTTGCCAACAGC+AGG + chr1_1:76373724-76373743 None:intergenic 60.0%
GCGATGAGCATCCTTCGCCT+GGG + chr1_1:76373799-76373818 None:intergenic 60.0%
AGCGATGAGCATCCTTCGCC+TGG + chr1_1:76373800-76373819 None:intergenic 60.0%
GTGGGATCAGGATGCGGCGA+TGG - chr1_1:76373630-76373649 Msa0044780:intron 65.0%
TCAGGATGCGGCGATGGGAC+TGG - chr1_1:76373636-76373655 Msa0044780:intron 65.0%
GGTCCCCCTGTTCCTGCTGT+TGG - chr1_1:76373709-76373728 Msa0044780:intron 65.0%
GTGGGATCAGGATGCGGCGA+TGG - chr1_1:76373630-76373649 Msa0044780:intron 65.0%
TCAGGATGCGGCGATGGGAC+TGG - chr1_1:76373636-76373655 Msa0044780:intron 65.0%
GGTCCCCCTGTTCCTGCTGT+TGG - chr1_1:76373709-76373728 Msa0044780:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 76373080 76375138 76373080 ID=Msa0044780;Name=Msa0044780
chr1_1 mRNA 76373080 76375138 76373080 ID=Msa0044780-mRNA-1;Parent=Msa0044780;Name=Msa0044780-mRNA-1;_AED=0.07;_eAED=0.07;_QI=79|1|1|1|1|1|4|289|234
chr1_1 exon 76373080 76373542 76373080 ID=Msa0044780-mRNA-1:exon:25926;Parent=Msa0044780-mRNA-1
chr1_1 exon 76374318 76374578 76374318 ID=Msa0044780-mRNA-1:exon:25925;Parent=Msa0044780-mRNA-1
chr1_1 exon 76374700 76374815 76374700 ID=Msa0044780-mRNA-1:exon:25924;Parent=Msa0044780-mRNA-1
chr1_1 exon 76374906 76375138 76374906 ID=Msa0044780-mRNA-1:exon:25923;Parent=Msa0044780-mRNA-1
chr1_1 five_prime_UTR 76375060 76375138 76375060 ID=Msa0044780-mRNA-1:five_prime_utr;Parent=Msa0044780-mRNA-1
chr1_1 CDS 76374906 76375059 76374906 ID=Msa0044780-mRNA-1:cds;Parent=Msa0044780-mRNA-1
chr1_1 CDS 76374700 76374815 76374700 ID=Msa0044780-mRNA-1:cds;Parent=Msa0044780-mRNA-1
chr1_1 CDS 76374318 76374578 76374318 ID=Msa0044780-mRNA-1:cds;Parent=Msa0044780-mRNA-1
chr1_1 CDS 76373369 76373542 76373369 ID=Msa0044780-mRNA-1:cds;Parent=Msa0044780-mRNA-1
chr1_1 three_prime_UTR 76373080 76373368 76373080 ID=Msa0044780-mRNA-1:three_prime_utr;Parent=Msa0044780-mRNA-1
Gene Sequence

>Msa0044780

ATGATGATGGAATCTTTGAGTTCATCTTCTGCAGCAACAACAACTCTACCTTCTTTCTCCATCTTCCCTTCTTCAACAAGAACATCATCATCATCATCATCATCTCTTTCTTCTTCCAAGAAAACCTTTCACTTTCGTCTACCCTCTTCTAAGCGTGACGATGGTAACAACGATTCAGAATCGCAATCTAAATCATCATCCAACGAACTCAACTTCAACCTTTCTCCAGTTCCCACTAATCGCTGTTTCTCCATTTCCCCTCTTTCCAATGATGCGGCGATGGGACTGGTGTTGAGTGCAGCAACAGGTAGAGGATGGACAACAGGTTCTGGGATGGAAGGTCCCCCTGTTCCTGCTGTTGGCAAGGATGGCCAATCTGGGACTGACAATATTTCCACTTTCCCATGGTCACTCTTCACTAAATCTCCCAGGCGAAGGATGCTCATCGCTTTTACTTGTACCATTTGTGGCCAGCGAACTACTCGCGCTATTAATCCTCATGCTTACACTGATGGCACTGTTTTTGTTCAGTGTTGTGAATGCAATGCGTATCATAAGCTTGTGGATCACTTGAACTTGTTTCAGGAGACGAATTGCTATTTGAATTCAAGTTTTAAGTATAAAGGTCCTGGATGGGATGATCTCAAGTTCAGGTTCATGGACATAGATAGCGACGACGATGATGATGTATTCCCCGTTACATGA

Protein sequence

>Msa0044780

MMMESLSSSSAATTTLPSFSIFPSSTRTSSSSSSSLSSSKKTFHFRLPSSKRDDGNNDSESQSKSSSNELNFNLSPVPTNRCFSISPLSNDAAMGLVLSAATGRGWTTGSGMEGPPVPAVGKDGQSGTDNISTFPWSLFTKSPRRRMLIAFTCTICGQRTTRAINPHAYTDGTVFVQCCECNAYHKLVDHLNLFQETNCYLNSSFKYKGPGWDDLKFRFMDIDSDDDDDVFPVT*