Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006880 | Msa0047820 | 0.846766 | 1.767272e-59 | -8.615850e-47 |
| Msa0047820 | Msa0055150 | 0.846884 | 1.640570e-59 | -8.615850e-47 |
| Msa0047820 | Msa0077010 | 0.814400 | 1.570614e-51 | -8.615850e-47 |
| Msa0047820 | Msa0090030 | 0.829797 | 4.210033e-55 | -8.615850e-47 |
| Msa0047820 | Msa0100800 | 0.803298 | 3.726659e-49 | -8.615850e-47 |
| Msa0047820 | Msa0108870 | 0.825153 | 5.473560e-54 | -8.615850e-47 |
| Msa0047820 | Msa0131450 | 0.822351 | 2.481511e-53 | -8.615850e-47 |
| Msa0047820 | Msa0166750 | 0.819286 | 1.258119e-52 | -8.615850e-47 |
| Msa0047820 | Msa0177270 | 0.814249 | 1.696166e-51 | -8.615850e-47 |
| Msa0047820 | Msa0182280 | 0.808923 | 2.439619e-50 | -8.615850e-47 |
| Msa0047820 | Msa0208810 | 0.809466 | 1.866554e-50 | -8.615850e-47 |
| Msa0047820 | Msa0229840 | 0.829797 | 4.210033e-55 | -8.615850e-47 |
| Msa0047820 | Msa0288730 | 0.804486 | 2.111282e-49 | -8.615850e-47 |
| Msa0047820 | Msa0291520 | 0.849104 | 4.004390e-60 | -8.615850e-47 |
| Msa0047820 | Msa0299520 | 0.808366 | 3.208450e-50 | -8.615850e-47 |
| Msa0047820 | Msa0384880 | 0.819832 | 9.440553e-53 | -8.615850e-47 |
| Msa0047820 | Msa0479330 | 0.820440 | 6.850040e-53 | -8.615850e-47 |
| Msa0047820 | Msa0513440 | 0.934076 | 7.059316e-96 | -8.615850e-47 |
| Msa0047820 | Msa0514180 | 0.807443 | 5.042552e-50 | -8.615850e-47 |
| Msa0047820 | Msa0556790 | 0.821531 | 3.842385e-53 | -8.615850e-47 |
| Msa0047820 | Msa0619920 | 0.802589 | 5.222218e-49 | -8.615850e-47 |
| Msa0047820 | Msa0641140 | 0.807946 | 3.942910e-50 | -8.615850e-47 |
| Msa0047820 | Msa0652300 | 0.842961 | 1.878041e-58 | -8.615850e-47 |
| Msa0047820 | Msa0659990 | 0.830017 | 3.720273e-55 | -8.615850e-47 |
| Msa0047820 | Msa0694840 | 0.810676 | 1.023992e-50 | -8.615850e-47 |
| Msa0047820 | Msa0705040 | 0.810257 | 1.261421e-50 | -8.615850e-47 |
| Msa0047820 | Msa0707390 | 0.809784 | 1.594323e-50 | -8.615850e-47 |
| Msa0047820 | Msa0850710 | 0.803070 | 4.154789e-49 | -8.615850e-47 |
| Msa0047820 | Msa0963020 | 0.802628 | 5.125663e-49 | -8.615850e-47 |
| Msa0047820 | Msa1025940 | 0.825372 | 4.858330e-54 | -8.615850e-47 |
| Msa0047820 | Msa1089840 | 0.800049 | 1.729661e-48 | -8.615850e-47 |
| Msa0047820 | Msa1093330 | 0.805965 | 1.034757e-49 | -8.615850e-47 |
| Msa0047820 | Msa1101540 | 0.884392 | 1.994510e-71 | -8.615850e-47 |
| Msa0047820 | Msa1125500 | 0.803078 | 4.138877e-49 | -8.615850e-47 |
| Msa0047820 | Msa1166410 | 0.801601 | 8.336162e-49 | -8.615850e-47 |
| Msa0047820 | Msa1201830 | 0.819675 | 1.025282e-52 | -8.615850e-47 |
| Msa0047820 | Msa1207730 | 0.809640 | 1.712073e-50 | -8.615850e-47 |
| Msa0047820 | Msa1227690 | 0.813269 | 2.787831e-51 | -8.615850e-47 |
| Msa0047820 | Msa1234980 | 0.802225 | 6.206419e-49 | -8.615850e-47 |
| Msa0047820 | Msa1254710 | 0.815651 | 8.286609e-52 | -8.615850e-47 |
| Msa0047820 | Msa1282240 | 0.804853 | 1.769243e-49 | -8.615850e-47 |
| Msa0047820 | Msa1294840 | 0.816129 | 6.482206e-52 | -8.615850e-47 |
| Msa0047820 | Msa1310690 | 0.817383 | 3.393819e-52 | -8.615850e-47 |
| Msa0047820 | Msa1340830 | 0.815672 | 8.198753e-52 | -8.615850e-47 |
| Msa0047820 | Msa1363700 | 0.806707 | 7.216603e-50 | -8.615850e-47 |
| Msa0047820 | Msa1365860 | 0.840051 | 1.097050e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0047820 | MtrunA17_Chr3g0120881 | 94.801 | 327 | 12 | 1 | 1 | 322 | 1 | 327 | 0.0 | 633 |
| Msa0047820 | MtrunA17_Chr5g0416081 | 32.468 | 231 | 148 | 3 | 1 | 223 | 3 | 233 | 1.91e-34 | 127 |
| Msa0047820 | MtrunA17_Chr7g0222351 | 23.488 | 281 | 184 | 9 | 5 | 260 | 1 | 275 | 4.11e-13 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0047820 | AT1G04960.1 | 42.296 | 331 | 166 | 8 | 1 | 321 | 1 | 316 | 2.03e-80 | 247 |
| Msa0047820 | AT1G04960.2 | 41.214 | 313 | 159 | 8 | 19 | 321 | 36 | 333 | 2.01e-72 | 227 |
| Msa0047820 | AT1G27000.1 | 34.934 | 229 | 142 | 2 | 1 | 223 | 1 | 228 | 2.70e-39 | 140 |
| Msa0047820 | AT2G02730.3 | 33.184 | 223 | 145 | 2 | 1 | 220 | 1 | 222 | 1.21e-37 | 135 |
| Msa0047820 | AT2G02730.1 | 33.184 | 223 | 145 | 2 | 1 | 220 | 1 | 222 | 1.21e-37 | 135 |
| Msa0047820 | AT2G02730.2 | 33.184 | 223 | 145 | 2 | 1 | 220 | 1 | 222 | 1.21e-37 | 135 |
| Msa0047820 | AT1G24265.2 | 26.780 | 295 | 190 | 6 | 5 | 287 | 1 | 281 | 1.19e-23 | 99.8 |
| Msa0047820 | AT1G24265.1 | 26.780 | 295 | 190 | 6 | 5 | 287 | 1 | 281 | 1.19e-23 | 99.8 |
| Msa0047820 | AT1G24267.1 | 32.000 | 225 | 140 | 4 | 5 | 219 | 1 | 222 | 3.67e-23 | 98.6 |
| Msa0047820 | AT1G24267.2 | 32.301 | 226 | 139 | 5 | 5 | 219 | 1 | 223 | 8.59e-22 | 94.7 |
| Msa0047820 | AT1G24265.3 | 27.861 | 201 | 132 | 3 | 29 | 219 | 60 | 257 | 9.62e-19 | 86.3 |
Find 104 sgRNAs with CRISPR-Local
Find 473 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCAAATTTCTTTGTTATTA+TGG | 0.049863 | 1_1:+80881392 | None:intergenic |
| TAAAATACTTAAATTAAATT+TGG | 0.190476 | 1_1:+80880987 | None:intergenic |
| GGTGAGCTCTCAATGGTTTC+TGG | 0.202687 | 1_1:+80881414 | None:intergenic |
| CCAAATTTCTTTGTTATTAT+GGG | 0.232916 | 1_1:+80881393 | None:intergenic |
| GAGCAGGGGCATTACTGATT+TGG | 0.334527 | 1_1:-80881295 | Msa0047820:CDS |
| ACCTTAGGGGCTTTCTCCTC+AGG | 0.342947 | 1_1:+80881547 | None:intergenic |
| CCCATAATAACAAAGAAATT+TGG | 0.348898 | 1_1:-80881393 | Msa0047820:CDS |
| AGGCATTCCTTTCTCAGATT+GGG | 0.358700 | 1_1:-80883192 | Msa0047820:CDS |
| GCTAGTTCTGTTGTTATGAA+TGG | 0.364025 | 1_1:-80887388 | Msa0047820:CDS |
| ACATTACAAATTCAGGTATC+TGG | 0.370312 | 1_1:-80882866 | Msa0047820:CDS |
| CTGTTGGCATTTCTGTGAGC+AGG | 0.378616 | 1_1:-80881311 | Msa0047820:CDS |
| TTCTTTGAAGATTATAACTA+AGG | 0.386399 | 1_1:+80880904 | None:intergenic |
| AAGGCATTCCTTTCTCAGAT+TGG | 0.387289 | 1_1:-80883193 | Msa0047820:CDS |
| CAAGCTTGTTGAAGGCAATC+AGG | 0.400468 | 1_1:-80883009 | Msa0047820:intron |
| GTTGGATGGTCTTGGCTTGG+AGG | 0.402244 | 1_1:-80885736 | Msa0047820:CDS |
| GGATGGTCTTGGCTTGGAGG+TGG | 0.409335 | 1_1:-80885733 | Msa0047820:CDS |
| ACCTTGTAAACTCCACCATT+TGG | 0.421144 | 1_1:+80882807 | None:intergenic |
| GCTTAAGTTAGTTGATGATC+AGG | 0.424364 | 1_1:-80887326 | Msa0047820:CDS |
| ATGCAGGACATTACAAATTC+AGG | 0.425759 | 1_1:-80882873 | Msa0047820:intron |
| ATAAAGAGGTTGGATGGTCT+TGG | 0.426125 | 1_1:-80885744 | Msa0047820:CDS |
| ATTCATTAACATGGAGATGA+TGG | 0.440009 | 1_1:+80881163 | None:intergenic |
| GACATTAACAATGGGCCAAA+TGG | 0.445188 | 1_1:-80882822 | Msa0047820:CDS |
| AATAACAGCGGTGTCATATC+CGG | 0.447170 | 1_1:+80887288 | None:intergenic |
| AGAAGAATTGTCATTATAGA+TGG | 0.450133 | 1_1:+80886314 | None:intergenic |
| GTATTACCTACTGCTGCAAT+AGG | 0.451703 | 1_1:-80886133 | Msa0047820:CDS |
| AGACTTATAAGATACTGAAT+TGG | 0.454666 | 1_1:+80881017 | None:intergenic |
| TTGCGGAGTTGTCCTTATCT+AGG | 0.468475 | 1_1:-80886344 | Msa0047820:CDS |
| GCCAAATGGTGGAGTTTACA+AGG | 0.472835 | 1_1:-80882808 | Msa0047820:intron |
| TGTCAATGACATCAGACAAT+TGG | 0.481147 | 1_1:+80887362 | None:intergenic |
| TTTGGAACTATAAATGAGCT+AGG | 0.484947 | 1_1:-80880958 | Msa0047820:three_prime_UTR |
| GAGGTTGGATGGTCTTGGCT+TGG | 0.486148 | 1_1:-80885739 | Msa0047820:CDS |
| AGGGACTTGCAGAACTTACA+AGG | 0.490753 | 1_1:-80882539 | Msa0047820:CDS |
| GATATTGTTACATGCGGTGG+AGG | 0.493713 | 1_1:-80886102 | Msa0047820:CDS |
| GAAAAGCTCAAGCTTGTTGA+AGG | 0.494401 | 1_1:-80883017 | Msa0047820:CDS |
| AAAGCATATAATAAAGAGGT+TGG | 0.496647 | 1_1:-80885754 | Msa0047820:CDS |
| ACTGCTGCAATAGGAGCTGC+TGG | 0.497908 | 1_1:-80886124 | Msa0047820:CDS |
| ATGAGAACCTTGGAGGAGGC+AGG | 0.500102 | 1_1:+80887529 | None:intergenic |
| TATTATGGGTGAGCTCTCAA+TGG | 0.500584 | 1_1:+80881407 | None:intergenic |
| TGATGTCATTGACAAGCTTA+AGG | 0.512815 | 1_1:-80887353 | Msa0047820:CDS |
| CTGCTCACAGAAATGCCAAC+AGG | 0.518943 | 1_1:+80881312 | None:intergenic |
| TCCAAGGTTCTCATCCTCGT+TGG | 0.519469 | 1_1:-80887520 | Msa0047820:CDS |
| TTTATTGAAGACATTAACAA+TGG | 0.522580 | 1_1:-80882831 | Msa0047820:CDS |
| AAATCAAATGATGTCTGAGC+TGG | 0.523352 | 1_1:-80883152 | Msa0047820:intron |
| TGTTGGCATTTCTGTGAGCA+GGG | 0.525043 | 1_1:-80881310 | Msa0047820:CDS |
| ATGTAGGGCGGAACGGAAGT+AGG | 0.525891 | 1_1:+80887734 | None:intergenic |
| TGATCAGCCTGCATGATCAA+TGG | 0.528814 | 1_1:-80881245 | Msa0047820:three_prime_UTR |
| AACGAGGATGAGAACCTTGG+AGG | 0.530591 | 1_1:+80887522 | None:intergenic |
| CAGGTTAAGATTTCAACCTC+CGG | 0.532263 | 1_1:-80887307 | Msa0047820:CDS |
| GATCAGCTGTAATTTAAAGA+AGG | 0.534312 | 1_1:+80881263 | None:intergenic |
| CATCACACCCAATCTGAGAA+AGG | 0.536724 | 1_1:+80883185 | None:intergenic |
| TTATTGAAGACATTAACAAT+GGG | 0.537142 | 1_1:-80882830 | Msa0047820:CDS |
| ACCTGAGGAGAAAGCCCCTA+AGG | 0.541700 | 1_1:-80881548 | Msa0047820:intron |
| GTTCTCATCCTCGTTGGAGC+CGG | 0.542164 | 1_1:-80887514 | Msa0047820:intron |
| CATATAATAAAGAGGTTGGA+TGG | 0.545494 | 1_1:-80885750 | Msa0047820:CDS |
| ACTTCCGTTCCGCCCTACAT+AGG | 0.547830 | 1_1:-80887731 | Msa0047820:five_prime_UTR |
| TCTTCTTCTCCGATGTGAAG+CGG | 0.548247 | 1_1:+80887602 | None:intergenic |
| TTGGAACTATAAATGAGCTA+GGG | 0.551880 | 1_1:-80880957 | Msa0047820:three_prime_UTR |
| TGGAACTATAAATGAGCTAG+GGG | 0.559430 | 1_1:-80880956 | Msa0047820:three_prime_UTR |
| AGTTCTGTTGTTATGAATGG+TGG | 0.562314 | 1_1:-80887385 | Msa0047820:CDS |
| ATTAACAATGGGCCAAATGG+TGG | 0.565885 | 1_1:-80882819 | Msa0047820:CDS |
| ACTTTGAATCGCTTGGTCCG+TGG | 0.565947 | 1_1:-80887663 | Msa0047820:five_prime_UTR |
| ACCTACCATGGCTTTACAGA+TGG | 0.571433 | 1_1:-80887554 | Msa0047820:exon |
| ATTTCCTATGTAGGGCGGAA+CGG | 0.579173 | 1_1:+80887727 | None:intergenic |
| AGAACTTACAAGGGCACTTG+AGG | 0.581677 | 1_1:-80882529 | Msa0047820:CDS |
| CTGGATATTGTTACATGCGG+TGG | 0.587309 | 1_1:-80886105 | Msa0047820:CDS |
| GATGGCACCTGCCTCCTCCA+AGG | 0.588504 | 1_1:-80887536 | Msa0047820:CDS |
| CATACAGGTGAAGGAACTGA+AGG | 0.591549 | 1_1:-80883212 | Msa0047820:intron |
| GATGGTCTTAGACCTAGATA+AGG | 0.591561 | 1_1:+80886332 | None:intergenic |
| GTTGGCATTTCTGTGAGCAG+GGG | 0.594630 | 1_1:-80881309 | Msa0047820:CDS |
| TATAATGACAATTCTTCTAG+AGG | 0.596108 | 1_1:-80886309 | Msa0047820:intron |
| GCAGCTCCTATTGCAGCAGT+AGG | 0.604279 | 1_1:+80886127 | None:intergenic |
| TGCATATTTCCTATGTAGGG+CGG | 0.604718 | 1_1:+80887722 | None:intergenic |
| GAGACACAAATTCATTAACA+TGG | 0.606227 | 1_1:+80881154 | None:intergenic |
| GAGGATGAGAACCTTGGAGG+AGG | 0.610275 | 1_1:+80887525 | None:intergenic |
| AAGTTAAAAGCAACTATGCA+AGG | 0.611533 | 1_1:+80887682 | None:intergenic |
| TCCAACGAGGATGAGAACCT+TGG | 0.617937 | 1_1:+80887519 | None:intergenic |
| ACTGAATCCATTGATCATGC+AGG | 0.618168 | 1_1:+80881238 | None:intergenic |
| TTACTAAATCAAGAGTACAC+AGG | 0.620214 | 1_1:-80881341 | Msa0047820:CDS |
| GTACACAGGGCATATCCTGT+TGG | 0.622120 | 1_1:-80881327 | Msa0047820:CDS |
| GTGTTCATTCCGCTTCACAT+CGG | 0.623766 | 1_1:-80887611 | Msa0047820:five_prime_UTR |
| AGAACTTACGATGGCACCTG+AGG | 0.627951 | 1_1:-80881563 | Msa0047820:CDS |
| AGGTGCCATCTGTAAAGCCA+TGG | 0.628164 | 1_1:+80887549 | None:intergenic |
| TACATCCGACAAGTATCCGA+AGG | 0.629437 | 1_1:+80881046 | None:intergenic |
| TTGAATCGCTTGGTCCGTGG+AGG | 0.630455 | 1_1:-80887660 | Msa0047820:five_prime_UTR |
| TACTAAATCAAGAGTACACA+GGG | 0.632279 | 1_1:-80881340 | Msa0047820:CDS |
| AACGTAACAACAACCTACCA+TGG | 0.645219 | 1_1:-80887566 | Msa0047820:exon |
| TGGTCCGTGGAGGACATAGA+CGG | 0.646769 | 1_1:-80887650 | Msa0047820:five_prime_UTR |
| GCAACTAGCACAAGAAATTG+CGG | 0.652131 | 1_1:-80886361 | Msa0047820:CDS |
| AACAGCGGTGTCATATCCGG+AGG | 0.656806 | 1_1:+80887291 | None:intergenic |
| GCCATCTGTAAAGCCATGGT+AGG | 0.668792 | 1_1:+80887553 | None:intergenic |
| CTGCTGGATATTGTTACATG+CGG | 0.670661 | 1_1:-80886108 | Msa0047820:CDS |
| ATTACCGTCTATGTCCTCCA+CGG | 0.677472 | 1_1:+80887646 | None:intergenic |
| GGGACTTGCAGAACTTACAA+GGG | 0.685663 | 1_1:-80882538 | Msa0047820:CDS |
| TTAAAAGCAACTATGCAAGG+TGG | 0.694802 | 1_1:+80887685 | None:intergenic |
| ATATTGTTACATGCGGTGGA+GGG | 0.695562 | 1_1:-80886101 | Msa0047820:intron |
| CATAGTATACAAAACCTTAG+GGG | 0.697644 | 1_1:+80881534 | None:intergenic |
| GTGAAGCGGAATGAACACGA+GGG | 0.701523 | 1_1:+80887616 | None:intergenic |
| GAGACTTGAAGAACTTACGA+TGG | 0.705891 | 1_1:-80881572 | Msa0047820:CDS |
| TGTGAAGCGGAATGAACACG+AGG | 0.706796 | 1_1:+80887615 | None:intergenic |
| TGAAGCGGAATGAACACGAG+GGG | 0.707645 | 1_1:+80887617 | None:intergenic |
| CAGAGTAGACAAAACCTTGG+GGG | 0.711472 | 1_1:+80882500 | None:intergenic |
| GAAGAATACCGGCTCCAACG+AGG | 0.738604 | 1_1:+80887506 | None:intergenic |
| GGAACTATAAATGAGCTAGG+GGG | 0.742735 | 1_1:-80880955 | Msa0047820:three_prime_UTR |
| GGAGAAGAAGAAATCGACGA+CGG | 0.745433 | 1_1:-80887590 | Msa0047820:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTGAAATAATATAAATAAA+CGG | + | chr1_1:80881666-80881685 | None:intergenic | 10.0% |
| !! | AAGAATTATTTGAATAATAT+TGG | + | chr1_1:80882170-80882189 | None:intergenic | 10.0% |
| !!! | TAGAAATTTAAAATCATTAT+TGG | + | chr1_1:80883889-80883908 | None:intergenic | 10.0% |
| !!! | TTTATTGTTATTTAGTATTT+AGG | + | chr1_1:80884373-80884392 | None:intergenic | 10.0% |
| !!! | ATGAAATTACTTTTTTTTAT+AGG | + | chr1_1:80884428-80884447 | None:intergenic | 10.0% |
| !!! | TTTTAGTTATTTAGTTTTTA+GGG | + | chr1_1:80884792-80884811 | None:intergenic | 10.0% |
| !!! | ATTTTAGTTATTTAGTTTTT+AGG | + | chr1_1:80884793-80884812 | None:intergenic | 10.0% |
| !! | AAAAAGATGTATAATAAATA+GGG | - | chr1_1:80885054-80885073 | Msa0047820:intron | 10.0% |
| !!! | ATTTTGTTTATTTTTTAGAA+AGG | - | chr1_1:80885959-80885978 | Msa0047820:CDS | 10.0% |
| !!! | GAGAAATTTTATTTTAATTA+TGG | + | chr1_1:80886435-80886454 | None:intergenic | 10.0% |
| !! | TGAACTTAAATTTATATTAA+CGG | - | chr1_1:80886645-80886664 | Msa0047820:intron | 10.0% |
| !! | TATATTGTTTGTTTGTAATT+CGG | - | chr1_1:80881483-80881502 | Msa0047820:intron | 15.0% |
| !!! | TATCTTTTATTTAGAATAAC+AGG | + | chr1_1:80883076-80883095 | None:intergenic | 15.0% |
| !! | ATAATTTATCAATTAGCATA+AGG | - | chr1_1:80883093-80883112 | Msa0047820:intron | 15.0% |
| !!! | GGTTTTAAATTTCATAATTA+GGG | + | chr1_1:80884407-80884426 | None:intergenic | 15.0% |
| !!! | AGGTTTTAAATTTCATAATT+AGG | + | chr1_1:80884408-80884427 | None:intergenic | 15.0% |
| !!! | TTTAGTTATTTAGTTTTTAG+GGG | + | chr1_1:80884791-80884810 | None:intergenic | 15.0% |
| !! | GAAAAAGATGTATAATAAAT+AGG | - | chr1_1:80885053-80885072 | Msa0047820:intron | 15.0% |
| !! | AAAAGATGTATAATAAATAG+GGG | - | chr1_1:80885055-80885074 | Msa0047820:intron | 15.0% |
| !! | AAAGAAATAATTAATGTAGT+TGG | - | chr1_1:80885087-80885106 | Msa0047820:intron | 15.0% |
| !!! | TTTAATAATACCATTTCTTT+TGG | + | chr1_1:80885301-80885320 | None:intergenic | 15.0% |
| !! | TATTAAACTTGAACTTTATT+TGG | - | chr1_1:80885314-80885333 | Msa0047820:intron | 15.0% |
| !! | ATTTACAACAAAAAAAATCA+GGG | + | chr1_1:80885762-80885781 | None:intergenic | 15.0% |
| !! | TATTTACAACAAAAAAAATC+AGG | + | chr1_1:80885763-80885782 | None:intergenic | 15.0% |
| !!! | AAACAATATTTTTTTCTTTC+CGG | + | chr1_1:80886717-80886736 | None:intergenic | 15.0% |
| !!! | TCAAAATTCTACATTCATTT+TGG | - | chr1_1:80881408-80881427 | Msa0047820:CDS | 20.0% |
| !! | ATTAACGAAAAACACATTTA+AGG | - | chr1_1:80881558-80881577 | Msa0047820:CDS | 20.0% |
| !! | CATGAATTCAATTCTTATTA+AGG | + | chr1_1:80883734-80883753 | None:intergenic | 20.0% |
| !!! | ACATTATTGATTGAATATGT+TGG | + | chr1_1:80883797-80883816 | None:intergenic | 20.0% |
| !!! | AACTAAATGTTTTCATATGA+TGG | - | chr1_1:80884260-80884279 | Msa0047820:intron | 20.0% |
| !! | TAAAATAGGAACAATTCTTA+GGG | + | chr1_1:80884315-80884334 | None:intergenic | 20.0% |
| !! | TTAAAATAGGAACAATTCTT+AGG | + | chr1_1:80884316-80884335 | None:intergenic | 20.0% |
| !! | TACTATTGTAATCAATCATT+CGG | - | chr1_1:80884677-80884696 | Msa0047820:intron | 20.0% |
| !!! | AGAATTTTGATGCATAATAA+GGG | + | chr1_1:80884832-80884851 | None:intergenic | 20.0% |
| !!! | TAGAATTTTGATGCATAATA+AGG | + | chr1_1:80884833-80884852 | None:intergenic | 20.0% |
| !!! | CAAGTTTAAAATTTTCATAC+AGG | - | chr1_1:80885431-80885450 | Msa0047820:intron | 20.0% |
| !! | AAAAAGGTGATTATTCAATT+TGG | + | chr1_1:80885582-80885601 | None:intergenic | 20.0% |
| !!! | TTCAAGTTAGAACATAAAAA+AGG | + | chr1_1:80885598-80885617 | None:intergenic | 20.0% |
| !! | TTTATTGAAGACATTAACAA+TGG | - | chr1_1:80885827-80885846 | Msa0047820:intron | 20.0% |
| !! | TTATTGAAGACATTAACAAT+GGG | - | chr1_1:80885828-80885847 | Msa0047820:intron | 20.0% |
| !! | AATTTCTCAAAATATAGTGT+AGG | + | chr1_1:80886269-80886288 | None:intergenic | 20.0% |
| !! | AGTACTATATGTATATATGT+TGG | - | chr1_1:80886293-80886312 | Msa0047820:intron | 20.0% |
| !! | ACTGAAGTAAAAAATTTACA+AGG | + | chr1_1:80886802-80886821 | None:intergenic | 20.0% |
| !!! | CCAAATTTCTTTGTTATTAT+GGG | + | chr1_1:80887268-80887287 | None:intergenic | 20.0% |
| !!! | ACCAAATTTCTTTGTTATTA+TGG | + | chr1_1:80887269-80887288 | None:intergenic | 20.0% |
| !!! | TTCTTTGAAGATTATAACTA+AGG | + | chr1_1:80887757-80887776 | None:intergenic | 20.0% |
| !! | TTTTGCATATTTCCTATGTA+GGG | + | chr1_1:80880942-80880961 | None:intergenic | 25.0% |
| ! | GAAAAATAAGAGAAGAATAC+CGG | + | chr1_1:80881166-80881185 | None:intergenic | 25.0% |
| !!! | TTTTGTTTTGTTGCAATTTC+AGG | - | chr1_1:80881243-80881262 | Msa0047820:three_prime_UTR | 25.0% |
| ! | AGTTAGTTAGTTAATCAGTT+TGG | + | chr1_1:80881513-80881532 | None:intergenic | 25.0% |
| ! | TACCACTAGGAATAATATTT+CGG | - | chr1_1:80881697-80881716 | Msa0047820:intron | 25.0% |
| !! | AAGTTTCAATTTGATGATTG+CGG | - | chr1_1:80881743-80881762 | Msa0047820:intron | 25.0% |
| ! | CTTAGGATATTTATTCTGTT+TGG | - | chr1_1:80882038-80882057 | Msa0047820:intron | 25.0% |
| ! | ATCAATATAAGAAGAGTAGT+AGG | + | chr1_1:80882110-80882129 | None:intergenic | 25.0% |
| ! | AGAAGAATTGTCATTATAGA+TGG | + | chr1_1:80882347-80882366 | None:intergenic | 25.0% |
| ! | TATAATGACAATTCTTCTAG+AGG | - | chr1_1:80882349-80882368 | Msa0047820:intron | 25.0% |
| !! | CGAAAAAGCATATAATAAAG+AGG | - | chr1_1:80882900-80882919 | Msa0047820:intron | 25.0% |
| ! | AAAGCATATAATAAAGAGGT+TGG | - | chr1_1:80882904-80882923 | Msa0047820:intron | 25.0% |
| ! | ATTTATCAATTAGCATAAGG+TGG | - | chr1_1:80883096-80883115 | Msa0047820:intron | 25.0% |
| !! | TCAATTTTCTTCTTTCACTT+AGG | - | chr1_1:80883187-80883206 | Msa0047820:CDS | 25.0% |
| ! | TATGCAAAAAGAGATGTATA+TGG | + | chr1_1:80883312-80883331 | None:intergenic | 25.0% |
| !! | ATATACATCTCTTTTTGCAT+AGG | - | chr1_1:80883311-80883330 | Msa0047820:intron | 25.0% |
| ! | ATCTACTATCTAGCTATTAT+TGG | + | chr1_1:80883363-80883382 | None:intergenic | 25.0% |
| ! | CGTAATTAAATTTGAACATG+AGG | + | chr1_1:80883973-80883992 | None:intergenic | 25.0% |
| !!! | TTTTGAGATATTGAAAGAGA+CGG | + | chr1_1:80884055-80884074 | None:intergenic | 25.0% |
| ! | TTAATCATCAAAAAGTCATG+TGG | - | chr1_1:80884235-80884254 | Msa0047820:intron | 25.0% |
| !!! | AGAATTGTTCCTATTTTAAG+AGG | - | chr1_1:80884317-80884336 | Msa0047820:intron | 25.0% |
| !!! | GAATTGTTCCTATTTTAAGA+GGG | - | chr1_1:80884318-80884337 | Msa0047820:intron | 25.0% |
| ! | ATCATATTCCCTCTTAAAAT+AGG | + | chr1_1:80884329-80884348 | None:intergenic | 25.0% |
| ! | AAATTTCATAATTAGGGCTT+GGG | + | chr1_1:80884401-80884420 | None:intergenic | 25.0% |
| ! | TAAATTTCATAATTAGGGCT+TGG | + | chr1_1:80884402-80884421 | None:intergenic | 25.0% |
| ! | TGTCTAAATGATTAAACTGA+AGG | - | chr1_1:80884704-80884723 | Msa0047820:intron | 25.0% |
| !!! | AAACTGAAGGCTTTTTTTTA+TGG | - | chr1_1:80884717-80884736 | Msa0047820:intron | 25.0% |
| ! | TAAACTAATTCTCTCTCTTA+AGG | + | chr1_1:80885001-80885020 | None:intergenic | 25.0% |
| !!! | GTTTTCCATATGCTATTTAT+TGG | - | chr1_1:80885022-80885041 | Msa0047820:intron | 25.0% |
| ! | AATCACCAATAAATAGCATA+TGG | + | chr1_1:80885030-80885049 | None:intergenic | 25.0% |
| ! | GACTCAAAAAATTCTCAAAA+GGG | - | chr1_1:80885137-80885156 | Msa0047820:intron | 25.0% |
| !! | TCAAAAGGGTCTTATAATTA+GGG | - | chr1_1:80885151-80885170 | Msa0047820:intron | 25.0% |
| !! | CTTTATTTGGTCCTTAATAA+TGG | - | chr1_1:80885327-80885346 | Msa0047820:intron | 25.0% |
| ! | CAAAACATACTCCATTATTA+AGG | + | chr1_1:80885341-80885360 | None:intergenic | 25.0% |
| !! | TGTAAAAATTCATTTTGCCA+AGG | + | chr1_1:80885399-80885418 | None:intergenic | 25.0% |
| !! | TAAAATTTTCATACAGGTGA+AGG | - | chr1_1:80885437-80885456 | Msa0047820:intron | 25.0% |
| !!! | TTTTGTTGTAAATATCATGC+AGG | - | chr1_1:80885769-80885788 | Msa0047820:intron | 25.0% |
| !! | TTCTTATGCAAATTTTGAAC+AGG | - | chr1_1:80886099-80886118 | Msa0047820:intron | 25.0% |
| !! | TCTTATGCAAATTTTGAACA+GGG | - | chr1_1:80886100-80886119 | Msa0047820:intron | 25.0% |
| ! | TTTATTGCCTTTCAATTAAG+TGG | - | chr1_1:80886181-80886200 | Msa0047820:intron | 25.0% |
| ! | TAAGCTTCAAACATATCTAT+TGG | + | chr1_1:80886352-80886371 | None:intergenic | 25.0% |
| ! | ACAAAATGTACTATACATAG+TGG | - | chr1_1:80886844-80886863 | Msa0047820:intron | 25.0% |
| !! | TAGCCAGAAATTTTAAATAG+TGG | + | chr1_1:80886875-80886894 | None:intergenic | 25.0% |
| !! | ACATTTCTAAAAAAACCACA+GGG | + | chr1_1:80886906-80886925 | None:intergenic | 25.0% |
| !! | AACATTTCTAAAAAAACCAC+AGG | + | chr1_1:80886907-80886926 | None:intergenic | 25.0% |
| !! | AATATTGCTCTAGATTATCA+TGG | - | chr1_1:80887006-80887025 | Msa0047820:intron | 25.0% |
| ! | TTGAAATACCCATAAAAACA+AGG | + | chr1_1:80887064-80887083 | None:intergenic | 25.0% |
| ! | ACATAGTATACAAAACCTTA+GGG | + | chr1_1:80887128-80887147 | None:intergenic | 25.0% |
| !! | TTATTTCAAGTATGTGTTTC+AGG | - | chr1_1:80887198-80887217 | Msa0047820:intron | 25.0% |
| !! | TATTTCAAGTATGTGTTTCA+GGG | - | chr1_1:80887199-80887218 | Msa0047820:intron | 25.0% |
| ! | CCCATAATAACAAAGAAATT+TGG | - | chr1_1:80887265-80887284 | Msa0047820:intron | 25.0% |
| !! | ATTGTCAAGTATTTTTCACA+TGG | - | chr1_1:80887577-80887596 | Msa0047820:five_prime_UTR | 25.0% |
| !! | ATGGATTTGTATTTTTCCTT+CGG | - | chr1_1:80887596-80887615 | Msa0047820:five_prime_UTR | 25.0% |
| ! | AGACTTATAAGATACTGAAT+TGG | + | chr1_1:80887644-80887663 | None:intergenic | 25.0% |
| !!! | TTAAGTATTTTAGCAACGTT+TGG | - | chr1_1:80887682-80887701 | Msa0047820:five_prime_UTR | 25.0% |
| ! | ATAGAATTGATGAAAAACTG+AGG | - | chr1_1:80887727-80887746 | Msa0047820:five_prime_UTR | 25.0% |
| ! | CTTTTGCATATTTCCTATGT+AGG | + | chr1_1:80880943-80880962 | None:intergenic | 30.0% |
| AAGTTAAAAGCAACTATGCA+AGG | + | chr1_1:80880979-80880998 | None:intergenic | 30.0% | |
| ACAATAATTCAAAACCAACG+AGG | + | chr1_1:80881222-80881241 | None:intergenic | 30.0% | |
| !!! | TTTTGTTGCAATTTCAGGTT+TGG | - | chr1_1:80881248-80881267 | Msa0047820:three_prime_UTR | 30.0% |
| !! | GAATTTTGAAAATACCTGAG+CGG | + | chr1_1:80881397-80881416 | None:intergenic | 30.0% |
| !!! | ATTTTGGTTCCTAAATGTGT+TGG | - | chr1_1:80881424-80881443 | Msa0047820:CDS | 30.0% |
| TTGTGATTTCGATACATTCA+GGG | + | chr1_1:80881450-80881469 | None:intergenic | 30.0% | |
| TTTGTGATTTCGATACATTC+AGG | + | chr1_1:80881451-80881470 | None:intergenic | 30.0% | |
| GAAATCACAAAAACATCGTT+GGG | - | chr1_1:80881460-80881479 | Msa0047820:intron | 30.0% | |
| ACCACTAGGAATAATATTTC+GGG | - | chr1_1:80881698-80881717 | Msa0047820:intron | 30.0% | |
| ! | AGTTTCAATTTGATGATTGC+GGG | - | chr1_1:80881744-80881763 | Msa0047820:intron | 30.0% |
| ! | TTACAAAGGTGTATTGAAGT+AGG | - | chr1_1:80881800-80881819 | Msa0047820:intron | 30.0% |
| ! | AAAATTACCTCCTTTTAGCA+TGG | - | chr1_1:80881913-80881932 | Msa0047820:intron | 30.0% |
| ATAAAGAAACAAAGGAGAAG+AGG | - | chr1_1:80881966-80881985 | Msa0047820:intron | 30.0% | |
| TAAAGAAACAAAGGAGAAGA+GGG | - | chr1_1:80881967-80881986 | Msa0047820:intron | 30.0% | |
| TATAAGAAGAGTAGTAGGTT+TGG | + | chr1_1:80882105-80882124 | None:intergenic | 30.0% | |
| TTTCTTCACAATGAACTTGT+TGG | - | chr1_1:80882241-80882260 | Msa0047820:intron | 30.0% | |
| ! | TTTTCCTTTCTTTCTTCTGA+TGG | - | chr1_1:80882428-80882447 | Msa0047820:intron | 30.0% |
| TATACCATCAGAAGAAAGAA+AGG | + | chr1_1:80882435-80882454 | None:intergenic | 30.0% | |
| !! | TTGAGTTGAGCTGTAATAAT+TGG | - | chr1_1:80882462-80882481 | Msa0047820:intron | 30.0% |
| ! | AATTGGCCTATGTTAACATT+TGG | - | chr1_1:80882479-80882498 | Msa0047820:intron | 30.0% |
| ! | ATTGGCCTATGTTAACATTT+GGG | - | chr1_1:80882480-80882499 | Msa0047820:intron | 30.0% |
| ATTTGTGAAGAAAAGAAGCT+GGG | + | chr1_1:80882594-80882613 | None:intergenic | 30.0% | |
| TTACATCTCACATCATATTC+TGG | + | chr1_1:80882632-80882651 | None:intergenic | 30.0% | |
| ! | TAGCAGTAAGTAGCTTTTAT+TGG | - | chr1_1:80882787-80882806 | Msa0047820:intron | 30.0% |
| CATATAATAAAGAGGTTGGA+TGG | - | chr1_1:80882908-80882927 | Msa0047820:intron | 30.0% | |
| GATGTCTTTAACTAGACTAA+TGG | + | chr1_1:80883007-80883026 | None:intergenic | 30.0% | |
| AGTAATTCACATCAACAATG+TGG | - | chr1_1:80883029-80883048 | Msa0047820:intron | 30.0% | |
| ! | TCTTCTTTCACTTAGGATTT+TGG | - | chr1_1:80883194-80883213 | Msa0047820:CDS | 30.0% |
| ! | CTTCTTTCACTTAGGATTTT+GGG | - | chr1_1:80883195-80883214 | Msa0047820:CDS | 30.0% |
| ! | AATCAAGGTTAGTTGATCAA+GGG | + | chr1_1:80883277-80883296 | None:intergenic | 30.0% |
| ! | AAATCAAGGTTAGTTGATCA+AGG | + | chr1_1:80883278-80883297 | None:intergenic | 30.0% |
| ! | TCAACTAACCTTGATTTTTG+TGG | - | chr1_1:80883281-80883300 | Msa0047820:intron | 30.0% |
| ! | CAACTAACCTTGATTTTTGT+GGG | - | chr1_1:80883282-80883301 | Msa0047820:intron | 30.0% |
| TATAAGTCATTACCAGTCAA+AGG | + | chr1_1:80883758-80883777 | None:intergenic | 30.0% | |
| !!! | AGCTTGAACTTTTTTAAGAG+TGG | + | chr1_1:80883854-80883873 | None:intergenic | 30.0% |
| ACTCTTAAAAAAGTTCAAGC+TGG | - | chr1_1:80883853-80883872 | Msa0047820:intron | 30.0% | |
| ! | TAAAGAAGCATGTTTACCAT+GGG | + | chr1_1:80884154-80884173 | None:intergenic | 30.0% |
| ! | TTAAAGAAGCATGTTTACCA+TGG | + | chr1_1:80884155-80884174 | None:intergenic | 30.0% |
| CCAATTTACATCATATTCCT+CGG | - | chr1_1:80884462-80884481 | Msa0047820:intron | 30.0% | |
| CAATTTACATCATATTCCTC+GGG | - | chr1_1:80884463-80884482 | Msa0047820:intron | 30.0% | |
| AGAGTCAAGGAAAATTCAAA+TGG | - | chr1_1:80884500-80884519 | Msa0047820:intron | 30.0% | |
| CTATGAATACCAAATTGATG+TGG | - | chr1_1:80884560-80884579 | Msa0047820:intron | 30.0% | |
| AATACCAAATTGATGTGGAA+TGG | - | chr1_1:80884565-80884584 | Msa0047820:intron | 30.0% | |
| TTAAAATAGGACCTATTAGG+GGG | + | chr1_1:80884760-80884779 | None:intergenic | 30.0% | |
| CTTAAAATAGGACCTATTAG+GGG | + | chr1_1:80884761-80884780 | None:intergenic | 30.0% | |
| GCTTAAAATAGGACCTATTA+GGG | + | chr1_1:80884762-80884781 | None:intergenic | 30.0% | |
| AGCTTAAAATAGGACCTATT+AGG | + | chr1_1:80884763-80884782 | None:intergenic | 30.0% | |
| AATCACGGGAATTAAGAAAT+TGG | - | chr1_1:80884926-80884945 | Msa0047820:intron | 30.0% | |
| AATGTAGTTGGAAATAGCAA+AGG | - | chr1_1:80885099-80885118 | Msa0047820:intron | 30.0% | |
| ATGTAGTTGGAAATAGCAAA+GGG | - | chr1_1:80885100-80885119 | Msa0047820:intron | 30.0% | |
| GGACTCAAAAAATTCTCAAA+AGG | - | chr1_1:80885136-80885155 | Msa0047820:intron | 30.0% | |
| ! | CTCAAAAGGGTCTTATAATT+AGG | - | chr1_1:80885150-80885169 | Msa0047820:intron | 30.0% |
| !! | TACCATTTCTTTTGGAAACA+CGG | + | chr1_1:80885293-80885312 | None:intergenic | 30.0% |
| TGATTATTCAATTTGGCTAG+AGG | + | chr1_1:80885575-80885594 | None:intergenic | 30.0% | |
| AATCAATCACTTTACTTGAC+AGG | - | chr1_1:80885616-80885635 | Msa0047820:intron | 30.0% | |
| ! | TAAGTTTAACTTTGCAGACA+TGG | - | chr1_1:80885682-80885701 | Msa0047820:intron | 30.0% |
| ! | AAGTTTAACTTTGCAGACAT+GGG | - | chr1_1:80885683-80885702 | Msa0047820:intron | 30.0% |
| ACATTACAAATTCAGGTATC+TGG | - | chr1_1:80885792-80885811 | Msa0047820:intron | 30.0% | |
| TGTGTATAAGTAGTCACTAA+AGG | - | chr1_1:80885936-80885955 | Msa0047820:CDS | 30.0% | |
| TATATTGCTCTGCATTATCA+TGG | - | chr1_1:80886063-80886082 | Msa0047820:intron | 30.0% | |
| ! | ACACCATTGTTGATCTTTTA+AGG | - | chr1_1:80886514-80886533 | Msa0047820:intron | 30.0% |
| ! | CACCATTGTTGATCTTTTAA+GGG | - | chr1_1:80886515-80886534 | Msa0047820:intron | 30.0% |
| AACCCTTAAAAGATCAACAA+TGG | + | chr1_1:80886520-80886539 | None:intergenic | 30.0% | |
| !! | TTTTAAGGGTTAAACTCTCA+AGG | - | chr1_1:80886529-80886548 | Msa0047820:intron | 30.0% |
| TTTAAGGGTTAAACTCTCAA+GGG | - | chr1_1:80886530-80886549 | Msa0047820:intron | 30.0% | |
| ! | CCAGAAATTTTAAATAGTGG+AGG | + | chr1_1:80886872-80886891 | None:intergenic | 30.0% |
| ! | CCTCCACTATTTAAAATTTC+TGG | - | chr1_1:80886869-80886888 | Msa0047820:intron | 30.0% |
| !!! | AATACTGAGCCTTGTTTTTA+TGG | - | chr1_1:80887052-80887071 | Msa0047820:intron | 30.0% |
| !!! | ATACTGAGCCTTGTTTTTAT+GGG | - | chr1_1:80887053-80887072 | Msa0047820:intron | 30.0% |
| CATAGTATACAAAACCTTAG+GGG | + | chr1_1:80887127-80887146 | None:intergenic | 30.0% | |
| GACATAGTATACAAAACCTT+AGG | + | chr1_1:80887129-80887148 | None:intergenic | 30.0% | |
| ! | ATTTCAAGTATGTGTTTCAG+GGG | - | chr1_1:80887200-80887219 | Msa0047820:intron | 30.0% |
| ! | TTACTAAATCAAGAGTACAC+AGG | - | chr1_1:80887317-80887336 | Msa0047820:CDS | 30.0% |
| ! | TACTAAATCAAGAGTACACA+GGG | - | chr1_1:80887318-80887337 | Msa0047820:CDS | 30.0% |
| GATCAGCTGTAATTTAAAGA+AGG | + | chr1_1:80887398-80887417 | None:intergenic | 30.0% | |
| !!! | CAGTGACAGTACTTTTTTTA+CGG | - | chr1_1:80887439-80887458 | Msa0047820:intron | 30.0% |
| ATTCATTAACATGGAGATGA+TGG | + | chr1_1:80887498-80887517 | None:intergenic | 30.0% | |
| GAGACACAAATTCATTAACA+TGG | + | chr1_1:80887507-80887526 | None:intergenic | 30.0% | |
| ! | TTTGGAACTATAAATGAGCT+AGG | - | chr1_1:80887700-80887719 | Msa0047820:five_prime_UTR | 30.0% |
| TTGGAACTATAAATGAGCTA+GGG | - | chr1_1:80887701-80887720 | Msa0047820:five_prime_UTR | 30.0% | |
| TTAAAAGCAACTATGCAAGG+TGG | + | chr1_1:80880976-80880995 | None:intergenic | 35.0% | |
| !!! | GCTTTTAACTTTGAATCGCT+TGG | - | chr1_1:80880988-80881007 | Msa0047820:three_prime_UTR | 35.0% |
| !! | GCTAGTTCTGTTGTTATGAA+TGG | - | chr1_1:80881270-80881289 | Msa0047820:three_prime_UTR | 35.0% |
| AGTTCTGTTGTTATGAATGG+TGG | - | chr1_1:80881273-80881292 | Msa0047820:exon | 35.0% | |
| TGTCAATGACATCAGACAAT+TGG | + | chr1_1:80881299-80881318 | None:intergenic | 35.0% | |
| TGATGTCATTGACAAGCTTA+AGG | - | chr1_1:80881305-80881324 | Msa0047820:CDS | 35.0% | |
| !! | GCTTAAGTTAGTTGATGATC+AGG | - | chr1_1:80881332-80881351 | Msa0047820:CDS | 35.0% |
| CGAAATCACAAAAACATCGT+TGG | - | chr1_1:80881459-80881478 | Msa0047820:intron | 35.0% | |
| GTGCATAGTATATTACCACT+AGG | - | chr1_1:80881684-80881703 | Msa0047820:intron | 35.0% | |
| ACCCGAAATATTATTCCTAG+TGG | + | chr1_1:80881702-80881721 | None:intergenic | 35.0% | |
| TGTTAGTAAGTCCACAGATA+TGG | - | chr1_1:80881777-80881796 | Msa0047820:intron | 35.0% | |
| AATGTAGAGAGTTTGAACCA+TGG | - | chr1_1:80881832-80881851 | Msa0047820:intron | 35.0% | |
| ATGTAGAGAGTTTGAACCAT+GGG | - | chr1_1:80881833-80881852 | Msa0047820:intron | 35.0% | |
| TATCCATCCACTAATCATCT+GGG | + | chr1_1:80881949-80881968 | None:intergenic | 35.0% | |
| TTATCCATCCACTAATCATC+TGG | + | chr1_1:80881950-80881969 | None:intergenic | 35.0% | |
| GTGGATGGATAAAGAAACAA+AGG | - | chr1_1:80881958-80881977 | Msa0047820:intron | 35.0% | |
| AAAGAAACAAAGGAGAAGAG+GGG | - | chr1_1:80881968-80881987 | Msa0047820:intron | 35.0% | |
| GAGTGATGCAAGTATAAATC+AGG | - | chr1_1:80882003-80882022 | Msa0047820:intron | 35.0% | |
| ! | CAATGTCTTAACTTCAGGTT+CGG | - | chr1_1:80882275-80882294 | Msa0047820:intron | 35.0% |
| GTTTGTAGAAGAAGTTGTGA+TGG | + | chr1_1:80882384-80882403 | None:intergenic | 35.0% | |
| CATTTGTGAAGAAAAGAAGC+TGG | + | chr1_1:80882595-80882614 | None:intergenic | 35.0% | |
| TTACCACTATTGTGCAGAAT+TGG | - | chr1_1:80882673-80882692 | Msa0047820:intron | 35.0% | |
| TCAAGGGAAAAGTGGTAATA+AGG | + | chr1_1:80883261-80883280 | None:intergenic | 35.0% | |
| TTAGTTGATCAAGGGAAAAG+TGG | + | chr1_1:80883269-80883288 | None:intergenic | 35.0% | |
| ! | ATTCTGACACAATTTTTCCC+TGG | + | chr1_1:80883426-80883445 | None:intergenic | 35.0% |
| ! | TCGAAGTGTTTACATCACAA+AGG | + | chr1_1:80883508-80883527 | None:intergenic | 35.0% |
| ! | AAGCTTGTTTGCTAGTATGT+TGG | - | chr1_1:80883531-80883550 | Msa0047820:intron | 35.0% |
| TTGGATGTAGGCTAACATTA+AGG | + | chr1_1:80883675-80883694 | None:intergenic | 35.0% | |
| AAGTGATAGGATAGTGATGT+TGG | + | chr1_1:80883694-80883713 | None:intergenic | 35.0% | |
| GACTACTACAAGAAAGTGAT+AGG | + | chr1_1:80883707-80883726 | None:intergenic | 35.0% | |
| TTGAATTCATGACCTTTGAC+TGG | - | chr1_1:80883743-80883762 | Msa0047820:intron | 35.0% | |
| !! | ATTTCTAGCATATCCTGTCA+AGG | - | chr1_1:80883902-80883921 | Msa0047820:intron | 35.0% |
| ACGAAATGCAAAACCTTCTT+GGG | + | chr1_1:80884093-80884112 | None:intergenic | 35.0% | |
| AACGAAATGCAAAACCTTCT+TGG | + | chr1_1:80884094-80884113 | None:intergenic | 35.0% | |
| TCTTTAAGTGCAAATTGCTG+TGG | - | chr1_1:80884168-80884187 | Msa0047820:intron | 35.0% | |
| CCGAGGAATATGATGTAAAT+TGG | + | chr1_1:80884465-80884484 | None:intergenic | 35.0% | |
| ! | TTGAATTTTCCTTGACTCTC+TGG | + | chr1_1:80884499-80884518 | None:intergenic | 35.0% |
| ATGATCTTTACTTCACTCAC+AGG | + | chr1_1:80884534-80884553 | None:intergenic | 35.0% | |
| CAAAAGGATACGCTTATTGA+GGG | + | chr1_1:80884600-80884619 | None:intergenic | 35.0% | |
| AGTTTGAGTCAAAGAAGCAA+CGG | + | chr1_1:80884635-80884654 | None:intergenic | 35.0% | |
| TATAAAGCTAACCCCCTAAT+AGG | - | chr1_1:80884746-80884765 | Msa0047820:intron | 35.0% | |
| AGGGGTTTCAAGCTTAAAAT+AGG | + | chr1_1:80884773-80884792 | None:intergenic | 35.0% | |
| GCAAAAGGGTCCTATAATTA+GGG | + | chr1_1:80884903-80884922 | None:intergenic | 35.0% | |
| AGCAAAAGGGTCCTATAATT+AGG | + | chr1_1:80884904-80884923 | None:intergenic | 35.0% | |
| !! | TTCCCGTGATTTTAGCAAAA+GGG | + | chr1_1:80884917-80884936 | None:intergenic | 35.0% |
| !! | ATTCCCGTGATTTTAGCAAA+AGG | + | chr1_1:80884918-80884937 | None:intergenic | 35.0% |
| TGTAGTTGGAAATAGCAAAG+GGG | - | chr1_1:80885101-80885120 | Msa0047820:intron | 35.0% | |
| ! | AGCAAAGGGGTCTTATAAAA+AGG | - | chr1_1:80885114-80885133 | Msa0047820:intron | 35.0% |
| ! | GCAAAGGGGTCTTATAAAAA+GGG | - | chr1_1:80885115-80885134 | Msa0047820:intron | 35.0% |
| ! | AAGGGTCTTATAATTAGGGA+CGG | - | chr1_1:80885155-80885174 | Msa0047820:intron | 35.0% |
| TACCGTGTTTCCAAAAGAAA+TGG | - | chr1_1:80885288-80885307 | Msa0047820:intron | 35.0% | |
| ! | TTTGCAGTTTGCTTAATGCT+AGG | - | chr1_1:80885371-80885390 | Msa0047820:intron | 35.0% |
| AAATCAAATGATGTCTGAGC+TGG | - | chr1_1:80885506-80885525 | Msa0047820:intron | 35.0% | |
| ATGCAGGACATTACAAATTC+AGG | - | chr1_1:80885785-80885804 | Msa0047820:intron | 35.0% | |
| CTTATACACAACTAGATGAG+TGG | + | chr1_1:80885907-80885926 | None:intergenic | 35.0% | |
| AACAGAGTAGACAAAACCTT+GGG | + | chr1_1:80886163-80886182 | None:intergenic | 35.0% | |
| AAACAGAGTAGACAAAACCT+TGG | + | chr1_1:80886164-80886183 | None:intergenic | 35.0% | |
| TCGAGAACCACTTAATTGAA+AGG | + | chr1_1:80886191-80886210 | None:intergenic | 35.0% | |
| TATGTTGGTATTTGACCAAG+TGG | - | chr1_1:80886308-80886327 | Msa0047820:intron | 35.0% | |
| ATTGGATGATAGATGAGTGT+AGG | + | chr1_1:80886334-80886353 | None:intergenic | 35.0% | |
| ! | GATTTTGTCTCACTTGTAGT+TGG | - | chr1_1:80886394-80886413 | Msa0047820:intron | 35.0% |
| ! | ACTCTAATTTGCAAGTCTAC+TGG | + | chr1_1:80886691-80886710 | None:intergenic | 35.0% |
| ACTTGCAAATTAGAGTTTGC+CGG | - | chr1_1:80886695-80886714 | Msa0047820:intron | 35.0% | |
| AAAAAATCGCAGGCACAAAA+GGG | - | chr1_1:80887468-80887487 | Msa0047820:intron | 35.0% | |
| ! | TTTTTCCTTCGGATACTTGT+CGG | - | chr1_1:80887607-80887626 | Msa0047820:five_prime_UTR | 35.0% |
| TGGAACTATAAATGAGCTAG+GGG | - | chr1_1:80887702-80887721 | Msa0047820:five_prime_UTR | 35.0% | |
| TGCATATTTCCTATGTAGGG+CGG | + | chr1_1:80880939-80880958 | None:intergenic | 40.0% | |
| AACGTAACAACAACCTACCA+TGG | - | chr1_1:80881092-80881111 | Msa0047820:three_prime_UTR | 40.0% | |
| CAGGTTAAGATTTCAACCTC+CGG | - | chr1_1:80881351-80881370 | Msa0047820:CDS | 40.0% | |
| !! | AATAACAGCGGTGTCATATC+CGG | + | chr1_1:80881373-80881392 | None:intergenic | 40.0% |
| ACACACTCGATGATGAATTC+AGG | - | chr1_1:80881601-80881620 | Msa0047820:intron | 40.0% | |
| CACACTCGATGATGAATTCA+GGG | - | chr1_1:80881602-80881621 | Msa0047820:intron | 40.0% | |
| GTCCACAGATATGGTTACAA+AGG | - | chr1_1:80881786-80881805 | Msa0047820:intron | 40.0% | |
| CACCTTTGTAACCATATCTG+TGG | + | chr1_1:80881791-80881810 | None:intergenic | 40.0% | |
| TGTAGAGAGTTTGAACCATG+GGG | - | chr1_1:80881834-80881853 | Msa0047820:intron | 40.0% | |
| GGGAGTCTTGATGAGAATAT+GGG | - | chr1_1:80881854-80881873 | Msa0047820:intron | 40.0% | |
| AGTCTTGATGAGAATATGGG+AGG | - | chr1_1:80881857-80881876 | Msa0047820:intron | 40.0% | |
| GTCTTGATGAGAATATGGGA+GGG | - | chr1_1:80881858-80881877 | Msa0047820:intron | 40.0% | |
| ATCCAGGTAGTTAGATGATC+AGG | - | chr1_1:80881890-80881909 | Msa0047820:intron | 40.0% | |
| TTCCTGATCATCTAACTACC+TGG | + | chr1_1:80881895-80881914 | None:intergenic | 40.0% | |
| TCAGGTCACTGAAATTGCTT+AGG | - | chr1_1:80882021-80882040 | Msa0047820:intron | 40.0% | |
| TGCTGCAATGTCTTAACTTC+AGG | - | chr1_1:80882270-80882289 | Msa0047820:intron | 40.0% | |
| GCAACTAGCACAAGAAATTG+CGG | - | chr1_1:80882297-80882316 | Msa0047820:intron | 40.0% | |
| ! | GATGGTCTTAGACCTAGATA+AGG | + | chr1_1:80882329-80882348 | None:intergenic | 40.0% |
| TATGTTAACATTTGGGCGCA+GGG | - | chr1_1:80882487-80882506 | Msa0047820:intron | 40.0% | |
| GTATTACCTACTGCTGCAAT+AGG | - | chr1_1:80882525-80882544 | Msa0047820:CDS | 40.0% | |
| CTGCTGGATATTGTTACATG+CGG | - | chr1_1:80882550-80882569 | Msa0047820:intron | 40.0% | |
| ATATTGTTACATGCGGTGGA+GGG | - | chr1_1:80882557-80882576 | Msa0047820:intron | 40.0% | |
| TGACCAATTCTGCACAATAG+TGG | + | chr1_1:80882679-80882698 | None:intergenic | 40.0% | |
| ATAAAGAGGTTGGATGGTCT+TGG | - | chr1_1:80882914-80882933 | Msa0047820:intron | 40.0% | |
| TCAATTAGCATAAGGTGGAG+AGG | - | chr1_1:80883101-80883120 | Msa0047820:intron | 40.0% | |
| CAATTAGCATAAGGTGGAGA+GGG | - | chr1_1:80883102-80883121 | Msa0047820:intron | 40.0% | |
| !! | TAGCACCGAAACAAGCTTTT+AGG | - | chr1_1:80883457-80883476 | Msa0047820:intron | 40.0% |
| ! | GCTTGCCTAAAAGCTTGTTT+CGG | + | chr1_1:80883465-80883484 | None:intergenic | 40.0% |
| GGTCAACCATGATAATTCTG+TGG | + | chr1_1:80883487-80883506 | None:intergenic | 40.0% | |
| AGGAGAGGAATTGTGATAGT+GGG | + | chr1_1:80883606-80883625 | None:intergenic | 40.0% | |
| TAGGAGAGGAATTGTGATAG+TGG | + | chr1_1:80883607-80883626 | None:intergenic | 40.0% | |
| CAACTTTCTTAGGTAGTGCT+AGG | + | chr1_1:80883626-80883645 | None:intergenic | 40.0% | |
| CCTAGAAAGGCAACTTTCTT+AGG | + | chr1_1:80883636-80883655 | None:intergenic | 40.0% | |
| CCTAAGAAAGTTGCCTTTCT+AGG | - | chr1_1:80883633-80883652 | Msa0047820:intron | 40.0% | |
| GGCTAACATTAAGGCAATGT+GGG | + | chr1_1:80883666-80883685 | None:intergenic | 40.0% | |
| AGGCTAACATTAAGGCAATG+TGG | + | chr1_1:80883667-80883686 | None:intergenic | 40.0% | |
| AGGATAGTGATGTTGGATGT+AGG | + | chr1_1:80883687-80883706 | None:intergenic | 40.0% | |
| CACACTGAAACACGAACAAA+GGG | + | chr1_1:80883824-80883843 | None:intergenic | 40.0% | |
| ACACACTGAAACACGAACAA+AGG | + | chr1_1:80883825-80883844 | None:intergenic | 40.0% | |
| GATATTGAAAGAGACGGTCT+GGG | + | chr1_1:80884049-80884068 | None:intergenic | 40.0% | |
| AGATATTGAAAGAGACGGTC+TGG | + | chr1_1:80884050-80884069 | None:intergenic | 40.0% | |
| ! | CCTTTGCTATGTCTACAAGT+AGG | + | chr1_1:80884286-80884305 | None:intergenic | 40.0% |
| CCTACTTGTAGACATAGCAA+AGG | - | chr1_1:80884283-80884302 | Msa0047820:intron | 40.0% | |
| ! | AATTTTCCTTGACTCTCTGG+AGG | + | chr1_1:80884496-80884515 | None:intergenic | 40.0% |
| CTCTCCATTCCACATCAATT+TGG | + | chr1_1:80884572-80884591 | None:intergenic | 40.0% | |
| CAAATTGATGTGGAATGGAG+AGG | - | chr1_1:80884570-80884589 | Msa0047820:intron | 40.0% | |
| CCAAAAGGATACGCTTATTG+AGG | + | chr1_1:80884601-80884620 | None:intergenic | 40.0% | |
| ! | CCTCAATAAGCGTATCCTTT+TGG | - | chr1_1:80884598-80884617 | Msa0047820:intron | 40.0% |
| AAGGGTCCTATAATTAGGGA+CGG | + | chr1_1:80884899-80884918 | None:intergenic | 40.0% | |
| ! | GGACCCTTTTGCTAAAATCA+CGG | - | chr1_1:80884911-80884930 | Msa0047820:intron | 40.0% |
| ! | GACCCTTTTGCTAAAATCAC+GGG | - | chr1_1:80884912-80884931 | Msa0047820:intron | 40.0% |
| ! | AAGGCATTCCTTTCTCAGAT+TGG | - | chr1_1:80885465-80885484 | Msa0047820:intron | 40.0% |
| AGGCATTCCTTTCTCAGATT+GGG | - | chr1_1:80885466-80885485 | Msa0047820:intron | 40.0% | |
| !! | GAAAAGCTCAAGCTTGTTGA+AGG | - | chr1_1:80885641-80885660 | Msa0047820:intron | 40.0% |
| GACATTAACAATGGGCCAAA+TGG | - | chr1_1:80885836-80885855 | Msa0047820:intron | 40.0% | |
| ATTAACAATGGGCCAAATGG+TGG | - | chr1_1:80885839-80885858 | Msa0047820:intron | 40.0% | |
| ACCTTGTAAACTCCACCATT+TGG | + | chr1_1:80885854-80885873 | None:intergenic | 40.0% | |
| ATACACAACTAGATGAGTGG+AGG | + | chr1_1:80885904-80885923 | None:intergenic | 40.0% | |
| ACAGAGTAGACAAAACCTTG+GGG | + | chr1_1:80886162-80886181 | None:intergenic | 40.0% | |
| AAACTACAAGTGAGTGAACG+AGG | + | chr1_1:80886494-80886513 | None:intergenic | 40.0% | |
| TCACACACTTTAGCTACGAA+GGG | + | chr1_1:80886763-80886782 | None:intergenic | 40.0% | |
| TTCACACACTTTAGCTACGA+AGG | + | chr1_1:80886764-80886783 | None:intergenic | 40.0% | |
| GAGACTTGAAGAACTTACGA+TGG | - | chr1_1:80887086-80887105 | Msa0047820:intron | 40.0% | |
| TACTTGAAATAAGTCACCGC+TGG | + | chr1_1:80887190-80887209 | None:intergenic | 40.0% | |
| TATTATGGGTGAGCTCTCAA+TGG | + | chr1_1:80887254-80887273 | None:intergenic | 40.0% | |
| ACTGAATCCATTGATCATGC+AGG | + | chr1_1:80887423-80887442 | None:intergenic | 40.0% | |
| ! | CTTTTGTGCCTGCGATTTTT+TGG | + | chr1_1:80887469-80887488 | None:intergenic | 40.0% |
| CAAAAAATCGCAGGCACAAA+AGG | - | chr1_1:80887467-80887486 | Msa0047820:intron | 40.0% | |
| GGAACTATAAATGAGCTAGG+GGG | - | chr1_1:80887703-80887722 | Msa0047820:five_prime_UTR | 40.0% | |
| ATTTCCTATGTAGGGCGGAA+CGG | + | chr1_1:80880934-80880953 | None:intergenic | 45.0% | |
| ATTACCGTCTATGTCCTCCA+CGG | + | chr1_1:80881015-80881034 | None:intergenic | 45.0% | |
| GTGTTCATTCCGCTTCACAT+CGG | - | chr1_1:80881047-80881066 | Msa0047820:three_prime_UTR | 45.0% | |
| TCTTCTTCTCCGATGTGAAG+CGG | + | chr1_1:80881059-80881078 | None:intergenic | 45.0% | |
| GGAGAAGAAGAAATCGACGA+CGG | - | chr1_1:80881068-80881087 | Msa0047820:three_prime_UTR | 45.0% | |
| ! | ACCTACCATGGCTTTACAGA+TGG | - | chr1_1:80881104-80881123 | Msa0047820:three_prime_UTR | 45.0% |
| ! | GCTTTCAAGTGTATCCTCGT+TGG | - | chr1_1:80881205-80881224 | Msa0047820:three_prime_UTR | 45.0% |
| CATTCAGGGCCAACACATTT+AGG | + | chr1_1:80881436-80881455 | None:intergenic | 45.0% | |
| ATTCTCATCAAGACTCCCCA+TGG | + | chr1_1:80881852-80881871 | None:intergenic | 45.0% | |
| GGGGAGTCTTGATGAGAATA+TGG | - | chr1_1:80881853-80881872 | Msa0047820:intron | 45.0% | |
| ! | TTACCTCCTTTTAGCATGGC+AGG | - | chr1_1:80881917-80881936 | Msa0047820:intron | 45.0% |
| ! | TACCTCCTTTTAGCATGGCA+GGG | - | chr1_1:80881918-80881937 | Msa0047820:intron | 45.0% |
| TTGCGGAGTTGTCCTTATCT+AGG | - | chr1_1:80882314-80882333 | Msa0047820:intron | 45.0% | |
| CTGCGCCCAAATGTTAACAT+AGG | + | chr1_1:80882488-80882507 | None:intergenic | 45.0% | |
| CTATGTTAACATTTGGGCGC+AGG | - | chr1_1:80882486-80882505 | Msa0047820:intron | 45.0% | |
| ATGTTAACATTTGGGCGCAG+GGG | - | chr1_1:80882488-80882507 | Msa0047820:intron | 45.0% | |
| CTGGATATTGTTACATGCGG+TGG | - | chr1_1:80882553-80882572 | Msa0047820:intron | 45.0% | |
| GATATTGTTACATGCGGTGG+AGG | - | chr1_1:80882556-80882575 | Msa0047820:intron | 45.0% | |
| ATATCCATGCTTCAAGCCCA+AGG | - | chr1_1:80883133-80883152 | Msa0047820:intron | 45.0% | |
| TATCCATGCTTCAAGCCCAA+GGG | - | chr1_1:80883134-80883153 | Msa0047820:intron | 45.0% | |
| TGGAGAGCCCACAAAAATCA+AGG | + | chr1_1:80883292-80883311 | None:intergenic | 45.0% | |
| GGCAAGCCACAGAATTATCA+TGG | - | chr1_1:80883478-80883497 | Msa0047820:intron | 45.0% | |
| TTCTTAGGTAGTGCTAGGAG+AGG | + | chr1_1:80883621-80883640 | None:intergenic | 45.0% | |
| !! | TGTGGGCTAGATTCCTAGAA+AGG | + | chr1_1:80883649-80883668 | None:intergenic | 45.0% |
| ATCCTGTCAAGGATGAGCTT+TGG | - | chr1_1:80883913-80883932 | Msa0047820:intron | 45.0% | |
| TCCTGTCAAGGATGAGCTTT+GGG | - | chr1_1:80883914-80883933 | Msa0047820:intron | 45.0% | |
| ! | TTGCAGTTGATGTCCCAAGA+AGG | - | chr1_1:80884077-80884096 | Msa0047820:intron | 45.0% |
| CTACCTCCGTCCCTAATTAT+AGG | - | chr1_1:80884890-80884909 | Msa0047820:intron | 45.0% | |
| ! | GGTCTTATAATTAGGGACGG+AGG | - | chr1_1:80885158-80885177 | Msa0047820:intron | 45.0% |
| ! | TTTGCAGCTCTGACTTCGAT+TGG | - | chr1_1:80885207-80885226 | Msa0047820:intron | 45.0% |
| ! | TTGCAGCTCTGACTTCGATT+GGG | - | chr1_1:80885208-80885227 | Msa0047820:intron | 45.0% |
| AATCCCACTGTCCACTAATG+GGG | + | chr1_1:80885237-80885256 | None:intergenic | 45.0% | |
| CAATCCCACTGTCCACTAAT+GGG | + | chr1_1:80885238-80885257 | None:intergenic | 45.0% | |
| TTGCTTAATGCTAGGTGCCT+TGG | - | chr1_1:80885379-80885398 | Msa0047820:intron | 45.0% | |
| CATACAGGTGAAGGAACTGA+AGG | - | chr1_1:80885446-80885465 | Msa0047820:intron | 45.0% | |
| CATCACACCCAATCTGAGAA+AGG | + | chr1_1:80885476-80885495 | None:intergenic | 45.0% | |
| !! | CAAGCTTGTTGAAGGCAATC+AGG | - | chr1_1:80885649-80885668 | Msa0047820:intron | 45.0% |
| ! | GCCAAATGGTGGAGTTTACA+AGG | - | chr1_1:80885850-80885869 | Msa0047820:intron | 45.0% |
| AGGGACTTGCAGAACTTACA+AGG | - | chr1_1:80886119-80886138 | Msa0047820:CDS | 45.0% | |
| GGGACTTGCAGAACTTACAA+GGG | - | chr1_1:80886120-80886139 | Msa0047820:CDS | 45.0% | |
| !! | AGAACTTACAAGGGCACTTG+AGG | - | chr1_1:80886129-80886148 | Msa0047820:CDS | 45.0% |
| CAGAGTAGACAAAACCTTGG+GGG | + | chr1_1:80886161-80886180 | None:intergenic | 45.0% | |
| AGGCACATACACCATTGTGT+GGG | - | chr1_1:80886237-80886256 | Msa0047820:intron | 45.0% | |
| ATAGATGAGTGTAGGCCACT+TGG | + | chr1_1:80886326-80886345 | None:intergenic | 45.0% | |
| CTAAAAAAACCACAGGGCAG+CGG | + | chr1_1:80886900-80886919 | None:intergenic | 45.0% | |
| TGTTGGCATTTCTGTGAGCA+GGG | - | chr1_1:80887348-80887367 | Msa0047820:CDS | 45.0% | |
| TGATCAGCCTGCATGATCAA+TGG | - | chr1_1:80887413-80887432 | Msa0047820:intron | 45.0% | |
| ACGGACAACCAAAAAATCGC+AGG | - | chr1_1:80887458-80887477 | Msa0047820:intron | 45.0% | |
| TACATCCGACAAGTATCCGA+AGG | + | chr1_1:80887615-80887634 | None:intergenic | 45.0% | |
| !! | TAAAATACTTAAATTAAATT+TGG | + | chr1_1:80887674-80887693 | None:intergenic | 5.0% |
| ACTTTGAATCGCTTGGTCCG+TGG | - | chr1_1:80880995-80881014 | Msa0047820:three_prime_UTR | 50.0% | |
| TGAAGCGGAATGAACACGAG+GGG | + | chr1_1:80881044-80881063 | None:intergenic | 50.0% | |
| GTGAAGCGGAATGAACACGA+GGG | + | chr1_1:80881045-80881064 | None:intergenic | 50.0% | |
| TGTGAAGCGGAATGAACACG+AGG | + | chr1_1:80881046-80881065 | None:intergenic | 50.0% | |
| GCCATCTGTAAAGCCATGGT+AGG | + | chr1_1:80881108-80881127 | None:intergenic | 50.0% | |
| ! | AGGTGCCATCTGTAAAGCCA+TGG | + | chr1_1:80881112-80881131 | None:intergenic | 50.0% |
| AACGAGGATGAGAACCTTGG+AGG | + | chr1_1:80881139-80881158 | None:intergenic | 50.0% | |
| TCCAAGGTTCTCATCCTCGT+TGG | - | chr1_1:80881138-80881157 | Msa0047820:three_prime_UTR | 50.0% | |
| TCCAACGAGGATGAGAACCT+TGG | + | chr1_1:80881142-80881161 | None:intergenic | 50.0% | |
| TACCTGAGCGGCAATAACAG+CGG | + | chr1_1:80881385-80881404 | None:intergenic | 50.0% | |
| TGATGAGAATATGGGAGGGC+AGG | - | chr1_1:80881862-80881881 | Msa0047820:intron | 50.0% | |
| TTCCCTGCCATGCTAAAAGG+AGG | + | chr1_1:80881923-80881942 | None:intergenic | 50.0% | |
| ! | TCCTTTTAGCATGGCAGGGA+AGG | - | chr1_1:80881922-80881941 | Msa0047820:intron | 50.0% |
| TCCTTCCCTGCCATGCTAAA+AGG | + | chr1_1:80881926-80881945 | None:intergenic | 50.0% | |
| GGAAGGACCCAGATGATTAG+TGG | - | chr1_1:80881939-80881958 | Msa0047820:intron | 50.0% | |
| GGACCCAGATGATTAGTGGA+TGG | - | chr1_1:80881943-80881962 | Msa0047820:intron | 50.0% | |
| GAAACAAAGGAGAAGAGGGG+AGG | - | chr1_1:80881971-80881990 | Msa0047820:intron | 50.0% | |
| AGAAGAGGGGAGGAAGAGTT+TGG | - | chr1_1:80881981-80882000 | Msa0047820:intron | 50.0% | |
| !! | TGTTTGGTAGCGAGAGTGAG+CGG | - | chr1_1:80882054-80882073 | Msa0047820:intron | 50.0% |
| TGTTAACATTTGGGCGCAGG+GGG | - | chr1_1:80882489-80882508 | Msa0047820:intron | 50.0% | |
| AGATGCGAGATTAGCAGCCA+GGG | - | chr1_1:80883406-80883425 | Msa0047820:intron | 50.0% | |
| GTCAACATCATGCTGTGGTG+AGG | + | chr1_1:80883584-80883603 | None:intergenic | 50.0% | |
| AGTGGGTCAACATCATGCTG+TGG | + | chr1_1:80883589-80883608 | None:intergenic | 50.0% | |
| TCCCAAAGCTCATCCTTGAC+AGG | + | chr1_1:80883918-80883937 | None:intergenic | 50.0% | |
| ! | ACGGTCTGGGACATCAAATG+CGG | + | chr1_1:80884036-80884055 | None:intergenic | 50.0% |
| TTCGTTTGCATGCTTGACCC+AGG | - | chr1_1:80884108-80884127 | Msa0047820:intron | 50.0% | |
| TTGCATGCTTGACCCAGGAT+AGG | - | chr1_1:80884113-80884132 | Msa0047820:intron | 50.0% | |
| TGACCCAGGATAGGTAACCT+TGG | - | chr1_1:80884122-80884141 | Msa0047820:intron | 50.0% | |
| GCTCCAAGGTTACCTATCCT+GGG | + | chr1_1:80884128-80884147 | None:intergenic | 50.0% | |
| TGCTCCAAGGTTACCTATCC+TGG | + | chr1_1:80884129-80884148 | None:intergenic | 50.0% | |
| !! | TTTACCATGGGAGTGCTCCA+AGG | + | chr1_1:80884142-80884161 | None:intergenic | 50.0% |
| GAATCTCCTCCAGAGAGTCA+AGG | - | chr1_1:80884487-80884506 | Msa0047820:intron | 50.0% | |
| GGTCCTATAATTAGGGACGG+AGG | + | chr1_1:80884896-80884915 | None:intergenic | 50.0% | |
| ATCCCACTGTCCACTAATGG+GGG | + | chr1_1:80885236-80885255 | None:intergenic | 50.0% | |
| CCAATCCCACTGTCCACTAA+TGG | + | chr1_1:80885239-80885258 | None:intergenic | 50.0% | |
| ! | CCATTAGTGGACAGTGGGAT+TGG | - | chr1_1:80885236-80885255 | Msa0047820:intron | 50.0% |
| ACTTGAGGAAAAAGCCCCCA+AGG | - | chr1_1:80886144-80886163 | Msa0047820:CDS | 50.0% | |
| GAGGCACATACACCATTGTG+TGG | - | chr1_1:80886236-80886255 | Msa0047820:intron | 50.0% | |
| AGAACTTACGATGGCACCTG+AGG | - | chr1_1:80887095-80887114 | Msa0047820:intron | 50.0% | |
| GTTCTCGAACTTGTAGCCAG+CGG | - | chr1_1:80887171-80887190 | Msa0047820:intron | 50.0% | |
| GGTGAGCTCTCAATGGTTTC+TGG | + | chr1_1:80887247-80887266 | None:intergenic | 50.0% | |
| GTACACAGGGCATATCCTGT+TGG | - | chr1_1:80887331-80887350 | Msa0047820:CDS | 50.0% | |
| CTGCTCACAGAAATGCCAAC+AGG | + | chr1_1:80887349-80887368 | None:intergenic | 50.0% | |
| CTGTTGGCATTTCTGTGAGC+AGG | - | chr1_1:80887347-80887366 | Msa0047820:CDS | 50.0% | |
| GTTGGCATTTCTGTGAGCAG+GGG | - | chr1_1:80887349-80887368 | Msa0047820:CDS | 50.0% | |
| !! | GAGCAGGGGCATTACTGATT+TGG | - | chr1_1:80887363-80887382 | Msa0047820:CDS | 50.0% |
| ATGTAGGGCGGAACGGAAGT+AGG | + | chr1_1:80880927-80880946 | None:intergenic | 55.0% | |
| ACTTCCGTTCCGCCCTACAT+AGG | - | chr1_1:80880927-80880946 | Msa0047820:three_prime_UTR | 55.0% | |
| TTGAATCGCTTGGTCCGTGG+AGG | - | chr1_1:80880998-80881017 | Msa0047820:three_prime_UTR | 55.0% | |
| TGGTCCGTGGAGGACATAGA+CGG | - | chr1_1:80881008-80881027 | Msa0047820:three_prime_UTR | 55.0% | |
| ATGAGAACCTTGGAGGAGGC+AGG | + | chr1_1:80881132-80881151 | None:intergenic | 55.0% | |
| GAGGATGAGAACCTTGGAGG+AGG | + | chr1_1:80881136-80881155 | None:intergenic | 55.0% | |
| GTTCTCATCCTCGTTGGAGC+CGG | - | chr1_1:80881144-80881163 | Msa0047820:three_prime_UTR | 55.0% | |
| !! | GAAGAATACCGGCTCCAACG+AGG | + | chr1_1:80881155-80881174 | None:intergenic | 55.0% |
| !! | AACAGCGGTGTCATATCCGG+AGG | + | chr1_1:80881370-80881389 | None:intergenic | 55.0% |
| !! | GTTTGGTAGCGAGAGTGAGC+GGG | - | chr1_1:80882055-80882074 | Msa0047820:intron | 55.0% |
| !! | TTTGGTAGCGAGAGTGAGCG+GGG | - | chr1_1:80882056-80882075 | Msa0047820:intron | 55.0% |
| GCAGCTCCTATTGCAGCAGT+AGG | + | chr1_1:80882534-80882553 | None:intergenic | 55.0% | |
| ACTGCTGCAATAGGAGCTGC+TGG | - | chr1_1:80882534-80882553 | Msa0047820:CDS | 55.0% | |
| ! | GAGGTTGGATGGTCTTGGCT+TGG | - | chr1_1:80882919-80882938 | Msa0047820:intron | 55.0% |
| !! | GTTGGATGGTCTTGGCTTGG+AGG | - | chr1_1:80882922-80882941 | Msa0047820:intron | 55.0% |
| AAGCCCTTGGGCTTGAAGCA+TGG | + | chr1_1:80883140-80883159 | None:intergenic | 55.0% | |
| ! | AGCCCAAGGGCTTGTTTGAG+AGG | - | chr1_1:80883147-80883166 | Msa0047820:intron | 55.0% |
| ! | GCCCAAGGGCTTGTTTGAGA+GGG | - | chr1_1:80883148-80883167 | Msa0047820:intron | 55.0% |
| GCCCTCTCAAACAAGCCCTT+GGG | + | chr1_1:80883152-80883171 | None:intergenic | 55.0% | |
| CAGATGCGAGATTAGCAGCC+AGG | - | chr1_1:80883405-80883424 | Msa0047820:intron | 55.0% | |
| ATCCAACTGCGACCCTACAC+AGG | - | chr1_1:80883558-80883577 | Msa0047820:intron | 55.0% | |
| ! | CGGTCTGGGACATCAAATGC+GGG | + | chr1_1:80884035-80884054 | None:intergenic | 55.0% |
| ! | GTAACCTTGGAGCACTCCCA+TGG | - | chr1_1:80884135-80884154 | Msa0047820:intron | 55.0% |
| ! | TCCCCCCATTAGTGGACAGT+GGG | - | chr1_1:80885231-80885250 | Msa0047820:intron | 55.0% |
| TCCCACTGTCCACTAATGGG+GGG | + | chr1_1:80885235-80885254 | None:intergenic | 55.0% | |
| !! | GGATTGGTCCTCCGAACAGT+CGG | - | chr1_1:80885252-80885271 | Msa0047820:intron | 55.0% |
| GTAGGCATGTGCCCACACAA+TGG | + | chr1_1:80886251-80886270 | None:intergenic | 55.0% | |
| ACCTGAGGAGAAAGCCCCTA+AGG | - | chr1_1:80887110-80887129 | Msa0047820:intron | 55.0% | |
| ACCTTAGGGGCTTTCTCCTC+AGG | + | chr1_1:80887114-80887133 | None:intergenic | 55.0% | |
| CACCGCTGTTATTGCCGCTC+AGG | - | chr1_1:80881380-80881399 | Msa0047820:CDS | 60.0% | |
| GGGAGGGCAGGAAAAGATCC+AGG | - | chr1_1:80881874-80881893 | Msa0047820:intron | 60.0% | |
| !! | GGATGGTCTTGGCTTGGAGG+TGG | - | chr1_1:80882925-80882944 | Msa0047820:intron | 60.0% |
| CGCCCTCTCAAACAAGCCCT+TGG | + | chr1_1:80883153-80883172 | None:intergenic | 60.0% | |
| GCTGTGGTGAGGCCTGTGTA+GGG | + | chr1_1:80883573-80883592 | None:intergenic | 60.0% | |
| TGCTGTGGTGAGGCCTGTGT+AGG | + | chr1_1:80883574-80883593 | None:intergenic | 60.0% | |
| ! | CTCTGGAGGAGATTCTCCCG+AGG | + | chr1_1:80884482-80884501 | None:intergenic | 60.0% |
| !! | ACGGAGCACTGCACGCCAAA+AGG | + | chr1_1:80884616-80884635 | None:intergenic | 60.0% |
| CGATTGGGTCCCCCCATTAG+TGG | - | chr1_1:80885223-80885242 | Msa0047820:intron | 60.0% | |
| ! | GTCCCCCCATTAGTGGACAG+TGG | - | chr1_1:80885230-80885249 | Msa0047820:intron | 60.0% |
| TCCTCCGAACAGTCGGTCCT+TGG | - | chr1_1:80885259-80885278 | Msa0047820:intron | 60.0% | |
| CCTCCGAACAGTCGGTCCTT+GGG | - | chr1_1:80885260-80885279 | Msa0047820:intron | 60.0% | |
| GAAACACGGTATCCCGCCCA+AGG | + | chr1_1:80885279-80885298 | None:intergenic | 60.0% | |
| TCTCGAACTCCTAGCCCCTG+TGG | - | chr1_1:80886205-80886224 | Msa0047820:intron | 60.0% | |
| AACTCCTAGCCCCTGTGGCA+GGG | - | chr1_1:80886210-80886229 | Msa0047820:intron | 60.0% | |
| GATGGCACCTGCCTCCTCCA+AGG | - | chr1_1:80881122-80881141 | Msa0047820:three_prime_UTR | 65.0% | |
| GGCCTGTGTAGGGTCGCAGT+TGG | + | chr1_1:80883563-80883582 | None:intergenic | 65.0% | |
| CCCAAGGACCGACTGTTCGG+AGG | + | chr1_1:80885263-80885282 | None:intergenic | 65.0% | |
| CCGCCCAAGGACCGACTGTT+CGG | + | chr1_1:80885266-80885285 | None:intergenic | 65.0% | |
| CCGAACAGTCGGTCCTTGGG+CGG | - | chr1_1:80885263-80885282 | Msa0047820:intron | 65.0% | |
| CGAACAGTCGGTCCTTGGGC+GGG | - | chr1_1:80885264-80885283 | Msa0047820:intron | 65.0% | |
| GAACTCCTAGCCCCTGTGGC+AGG | - | chr1_1:80886209-80886228 | Msa0047820:intron | 65.0% | |
| ACTCCTAGCCCCTGTGGCAG+GGG | - | chr1_1:80886211-80886230 | Msa0047820:intron | 65.0% | |
| CCTAGCCCCTGTGGCAGGGG+CGG | - | chr1_1:80886214-80886233 | Msa0047820:intron | 75.0% | |
| TGCCTCCGCCCCTGCCACAG+GGG | + | chr1_1:80886222-80886241 | None:intergenic | 75.0% | |
| GTGCCTCCGCCCCTGCCACA+GGG | + | chr1_1:80886223-80886242 | None:intergenic | 75.0% | |
| TGTGCCTCCGCCCCTGCCAC+AGG | + | chr1_1:80886224-80886243 | None:intergenic | 75.0% | |
| CTGGCTACGCCGCTGCCCTG+TGG | - | chr1_1:80886888-80886907 | Msa0047820:intron | 75.0% | |
| ! | CCGCCCCTGCCACAGGGGCT+AGG | + | chr1_1:80886217-80886236 | None:intergenic | 80.0% |
| ! | AGCCCCTGTGGCAGGGGCGG+AGG | - | chr1_1:80886217-80886236 | Msa0047820:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 80880877 | 80887803 | 80880877 | ID=Msa0047820;Name=Msa0047820 |
| chr1_1 | mRNA | 80880877 | 80887803 | 80880877 | ID=Msa0047820-mRNA-1;Parent=Msa0047820;Name=Msa0047820-mRNA-1;_AED=0.10;_eAED=0.10;_QI=234|0.90|0.91|1|0.90|0.91|12|413|322 |
| chr1_1 | exon | 80880877 | 80881460 | 80880877 | ID=Msa0047820-mRNA-1:exon:27948;Parent=Msa0047820-mRNA-1 |
| chr1_1 | exon | 80881549 | 80881593 | 80881549 | ID=Msa0047820-mRNA-1:exon:27947;Parent=Msa0047820-mRNA-1 |
| chr1_1 | exon | 80882515 | 80882559 | 80882515 | ID=Msa0047820-mRNA-1:exon:27946;Parent=Msa0047820-mRNA-1 |
| chr1_1 | exon | 80882809 | 80882889 | 80882809 | ID=Msa0047820-mRNA-1:exon:27945;Parent=Msa0047820-mRNA-1 |
| chr1_1 | exon | 80883010 | 80883042 | 80883010 | ID=Msa0047820-mRNA-1:exon:27944;Parent=Msa0047820-mRNA-1 |
| chr1_1 | exon | 80883153 | 80883227 | 80883153 | ID=Msa0047820-mRNA-1:exon:27943;Parent=Msa0047820-mRNA-1 |
| chr1_1 | exon | 80885695 | 80885784 | 80885695 | ID=Msa0047820-mRNA-1:exon:27942;Parent=Msa0047820-mRNA-1 |
| chr1_1 | exon | 80885889 | 80885990 | 80885889 | ID=Msa0047820-mRNA-1:exon:27941;Parent=Msa0047820-mRNA-1 |
| chr1_1 | exon | 80886102 | 80886172 | 80886102 | ID=Msa0047820-mRNA-1:exon:27940;Parent=Msa0047820-mRNA-1 |
| chr1_1 | exon | 80886310 | 80886388 | 80886310 | ID=Msa0047820-mRNA-1:exon:27939;Parent=Msa0047820-mRNA-1 |
| chr1_1 | exon | 80887294 | 80887415 | 80887294 | ID=Msa0047820-mRNA-1:exon:27938;Parent=Msa0047820-mRNA-1 |
| chr1_1 | exon | 80887515 | 80887803 | 80887515 | ID=Msa0047820-mRNA-1:exon:27937;Parent=Msa0047820-mRNA-1 |
| chr1_1 | five_prime_UTR | 80887570 | 80887803 | 80887570 | ID=Msa0047820-mRNA-1:five_prime_utr;Parent=Msa0047820-mRNA-1 |
| chr1_1 | CDS | 80887515 | 80887569 | 80887515 | ID=Msa0047820-mRNA-1:cds;Parent=Msa0047820-mRNA-1 |
| chr1_1 | CDS | 80887294 | 80887415 | 80887294 | ID=Msa0047820-mRNA-1:cds;Parent=Msa0047820-mRNA-1 |
| chr1_1 | CDS | 80886310 | 80886388 | 80886310 | ID=Msa0047820-mRNA-1:cds;Parent=Msa0047820-mRNA-1 |
| chr1_1 | CDS | 80886102 | 80886172 | 80886102 | ID=Msa0047820-mRNA-1:cds;Parent=Msa0047820-mRNA-1 |
| chr1_1 | CDS | 80885889 | 80885990 | 80885889 | ID=Msa0047820-mRNA-1:cds;Parent=Msa0047820-mRNA-1 |
| chr1_1 | CDS | 80885695 | 80885784 | 80885695 | ID=Msa0047820-mRNA-1:cds;Parent=Msa0047820-mRNA-1 |
| chr1_1 | CDS | 80883153 | 80883227 | 80883153 | ID=Msa0047820-mRNA-1:cds;Parent=Msa0047820-mRNA-1 |
| chr1_1 | CDS | 80883010 | 80883042 | 80883010 | ID=Msa0047820-mRNA-1:cds;Parent=Msa0047820-mRNA-1 |
| chr1_1 | CDS | 80882809 | 80882889 | 80882809 | ID=Msa0047820-mRNA-1:cds;Parent=Msa0047820-mRNA-1 |
| chr1_1 | CDS | 80882515 | 80882559 | 80882515 | ID=Msa0047820-mRNA-1:cds;Parent=Msa0047820-mRNA-1 |
| chr1_1 | CDS | 80881549 | 80881593 | 80881549 | ID=Msa0047820-mRNA-1:cds;Parent=Msa0047820-mRNA-1 |
| chr1_1 | CDS | 80881290 | 80881460 | 80881290 | ID=Msa0047820-mRNA-1:cds;Parent=Msa0047820-mRNA-1 |
| chr1_1 | three_prime_UTR | 80880877 | 80881289 | 80880877 | ID=Msa0047820-mRNA-1:three_prime_utr;Parent=Msa0047820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
