AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0652300

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0652300 MtrunA17_Chr4g0045851 98.507 201 3 0 1 201 1 201 1.64e-138 385
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0652300 AT3G59800.2 85.149 101 15 0 1 101 1 101 6.39e-50 159
Msa0652300 AT3G59800.1 85.149 101 15 0 1 101 1 101 2.98e-49 159
Msa0652300 AT2G43795.2 49.701 167 83 1 30 195 1 167 3.22e-46 150
Msa0652300 AT2G43795.1 73.333 90 24 0 30 119 1 90 8.62e-42 138

Find 66 sgRNAs with CRISPR-Local

Find 560 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAATAACACTTCTGGATT+TGG 0.223401 4_3:-60000483 Msa0652300:three_prime_UTR
TTTCTGCAAATAGTAAATTA+TGG 0.256609 4_3:-60000670 Msa0652300:three_prime_UTR
CTAGGAAGAAGAACTGAAAA+AGG 0.260060 4_3:-60003445 Msa0652300:intron
TCATAGCCAGACCTTGTTCT+TGG 0.262017 4_3:+60000406 None:intergenic
TCAAGAAGTTTGTTGACTTT+AGG 0.279506 4_3:-60000579 Msa0652300:three_prime_UTR
TTGATAGATTGATTGTTCTA+TGG 0.299314 4_3:+60007193 None:intergenic
TGATGTTTGAATAACACTTC+TGG 0.301559 4_3:-60000489 Msa0652300:three_prime_UTR
AATCTATCAATTCAGAGAAA+TGG 0.314391 4_3:-60007180 Msa0652300:exon
TCACAAATTTCAATCGAATC+AGG 0.320223 4_3:-60007252 Msa0652300:five_prime_UTR
ATCTATCAATTCAGAGAAAT+GGG 0.342377 4_3:-60007179 Msa0652300:exon
GCAAGGCTCGGTGGTGCTTC+CGG 0.354086 4_3:-60007125 Msa0652300:CDS
GTTGATAGTGGTTGAATACT+TGG 0.366478 4_3:-60000713 Msa0652300:exon
AGAGTGGCATGCTGCCCGTT+TGG 0.423871 4_3:-60006188 Msa0652300:CDS
GATGATGAAGAGGAGCTAGA+TGG 0.425155 4_3:+60000908 None:intergenic
TCTCTCTTCGTCTTCACTAC+TGG 0.428331 4_3:+60000874 None:intergenic
TTGCAATGTGCGAACGTAGC+TGG 0.437203 4_3:+60007304 None:intergenic
TTGATTGATGTAGTGTGAAA+AGG 0.442243 4_3:-60000556 Msa0652300:three_prime_UTR
CTTCTTTGACCGCTTAGACC+TGG 0.443954 4_3:+60000832 None:intergenic
AAACATCTCACACAATTACC+TGG 0.458263 4_3:-60006156 Msa0652300:CDS
ATAAGATGATGAGGGAGTAC+AGG 0.478016 4_3:-60003401 Msa0652300:CDS
TGATTGATGTAGTGTGAAAA+GGG 0.479537 4_3:-60000555 Msa0652300:three_prime_UTR
AAGGGCTCGCAAACTTTCCC+AGG 0.487233 4_3:-60003361 Msa0652300:CDS
AGCCTAAAGTTATCACGAAA+AGG 0.487395 4_3:+60000432 None:intergenic
ATGCCATCTTCAACCTCATC+GGG 0.490780 4_3:+60007098 None:intergenic
TACTAGAGTGATTTCTACCC+TGG 0.496543 4_3:+60003343 None:intergenic
GGGACATCAAGAGTTGATAG+TGG 0.496931 4_3:-60000725 Msa0652300:CDS
TTCACTACTGGAAGAGTATG+AGG 0.499980 4_3:+60000886 None:intergenic
AGTAAGTCTAAACATTCAAA+AGG 0.504331 4_3:-60003321 Msa0652300:intron
GCTTATCCAAGAACAAGGTC+TGG 0.504454 4_3:-60000412 Msa0652300:three_prime_UTR
CAGGTCTAAGCGGTCAAAGA+AGG 0.511908 4_3:-60000831 Msa0652300:CDS
GGCTCAACTAGATGCTGAAA+GGG 0.514123 4_3:-60003379 Msa0652300:CDS
AGAGTATGAGGATGATGAAG+AGG 0.519047 4_3:+60000898 None:intergenic
AAACGGGCAGCATGCCACTC+TGG 0.524308 4_3:+60006190 None:intergenic
TTCAACCTCATCGGGACCAC+CGG 0.529801 4_3:+60007106 None:intergenic
CACAAATTTCAATCGAATCA+GGG 0.541830 4_3:-60007251 Msa0652300:five_prime_UTR
TCCGCCACCATCTTCACTAT+CGG 0.542822 4_3:+60000772 None:intergenic
AGGAGCTATTATTTCAGAGT+GGG 0.556327 4_3:+60000452 None:intergenic
TCTGGAACCGATAGTGAAGA+TGG 0.562772 4_3:-60000779 Msa0652300:CDS
GGTCCCGATGAGGTTGAAGA+TGG 0.565102 4_3:-60007101 Msa0652300:CDS
CGATGAGGTTGAAGATGGCA+TGG 0.570062 4_3:-60007096 Msa0652300:intron
CATGCCATCTTCAACCTCAT+CGG 0.571808 4_3:+60007097 None:intergenic
GGGCTCAACTAGATGCTGAA+AGG 0.573209 4_3:-60003380 Msa0652300:CDS
ACAAAGCTATGCAGAGAGCA+AGG 0.581939 4_3:-60007142 Msa0652300:CDS
CAGATGCAGATAAGATGATG+AGG 0.597568 4_3:-60003410 Msa0652300:CDS
TTTAGGCTTATCCAAGAACA+AGG 0.601464 4_3:-60000417 Msa0652300:three_prime_UTR
AACATCTCACACAATTACCT+GGG 0.601521 4_3:-60006155 Msa0652300:CDS
TGAGGACTGTCGCAGGTGGA+TGG 0.601935 4_3:-60006226 Msa0652300:intron
AGGCTCGGTGGTGCTTCCGG+TGG 0.602328 4_3:-60007122 Msa0652300:CDS
TAAGATGATGAGGGAGTACA+GGG 0.603577 4_3:-60003400 Msa0652300:CDS
AGATGCAGATAAGATGATGA+GGG 0.604147 4_3:-60003409 Msa0652300:CDS
GAATCAGGGTCTAACTGTGG+TGG 0.616678 4_3:-60007237 Msa0652300:five_prime_UTR
ACCGATAGTGAAGATGGTGG+CGG 0.628462 4_3:-60000773 Msa0652300:CDS
ATGCAGAGAGCAAGGCTCGG+TGG 0.635782 4_3:-60007134 Msa0652300:CDS
GTTCATTTCATTCACCAGAG+TGG 0.638013 4_3:-60006204 Msa0652300:CDS
ACTAGAGTGATTTCTACCCT+GGG 0.639592 4_3:+60003344 None:intergenic
TGCTTCCGGTGGTCCCGATG+AGG 0.643153 4_3:-60007111 Msa0652300:CDS
AAGGAGCTATTATTTCAGAG+TGG 0.643772 4_3:+60000451 None:intergenic
TATTCTACTATACAGACAAG+AGG 0.650041 4_3:-60003209 Msa0652300:intron
ATTCTACTATACAGACAAGA+GGG 0.661482 4_3:-60003208 Msa0652300:intron
AGGGCTCGCAAACTTTCCCA+GGG 0.663904 4_3:-60003360 Msa0652300:CDS
GCTATGCAGAGAGCAAGGCT+CGG 0.668438 4_3:-60007137 Msa0652300:CDS
TCTATCAATTCAGAGAAATG+GGG 0.673304 4_3:-60007178 Msa0652300:exon
GATTGATGTAGTGTGAAAAG+GGG 0.678302 4_3:-60000554 Msa0652300:three_prime_UTR
GATCGAAGTCCAGGTCTAAG+CGG 0.689586 4_3:-60000841 Msa0652300:CDS
ATCGAATCAGGGTCTAACTG+TGG 0.693954 4_3:-60007240 Msa0652300:five_prime_UTR
GGAACCGATAGTGAAGATGG+TGG 0.710189 4_3:-60000776 Msa0652300:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTTATGAATTTCTTT+TGG - chr4_3:60001267-60001286 Msa0652300:intron 10.0%
!! TAAAATACTAATAAAATTCA+AGG - chr4_3:60002893-60002912 Msa0652300:intron 10.0%
!!! TAATTGTTAATTTGTTAATT+GGG + chr4_3:60002992-60003011 None:intergenic 10.0%
!!! TTAATTGTTAATTTGTTAAT+TGG + chr4_3:60002993-60003012 None:intergenic 10.0%
!! TATATATCGTTATATTTATT+TGG + chr4_3:60003483-60003502 None:intergenic 10.0%
!!! TTATTATTTGAAAGAATTTT+TGG - chr4_3:60003570-60003589 Msa0652300:intron 10.0%
!! TTTAAAAAAAAATAATATCC+AGG + chr4_3:60003749-60003768 None:intergenic 10.0%
!!! ATTGAAATTTGTGATTTTTA+GGG + chr4_3:60000451-60000470 None:intergenic 15.0%
!!! ATTTTATGCTCTTAATTTTT+GGG - chr4_3:60000727-60000746 Msa0652300:CDS 15.0%
!! GAAATTATAAAAAAGATGTA+AGG + chr4_3:60001752-60001771 None:intergenic 15.0%
!! TGTTGTATATTATATAAACA+CGG + chr4_3:60001840-60001859 None:intergenic 15.0%
!! TTAAGAAGAAATTAAAAAAC+AGG + chr4_3:60002159-60002178 None:intergenic 15.0%
!! AATATAACGATATATAGATT+TGG - chr4_3:60003487-60003506 Msa0652300:intron 15.0%
!! GTTAAGAAAAAAATATTCTT+GGG + chr4_3:60003944-60003963 None:intergenic 15.0%
!!! TCTGTAAATTTGTTTAAAAA+GGG + chr4_3:60006177-60006196 None:intergenic 15.0%
!!! TTCTGTAAATTTGTTTAAAA+AGG + chr4_3:60006178-60006197 None:intergenic 15.0%
!!! GAAAATGATTTTATTTTGTT+TGG - chr4_3:60006256-60006275 Msa0652300:intron 15.0%
!!! GATTGAAATTTGTGATTTTT+AGG + chr4_3:60000452-60000471 None:intergenic 20.0%
!! AAAATAGAAAGAGGATAATA+TGG + chr4_3:60000650-60000669 None:intergenic 20.0%
!!! GATTTTATGCTCTTAATTTT+TGG - chr4_3:60000726-60000745 Msa0652300:CDS 20.0%
!!! AAGTTATTTTTTTCACTTGA+TGG + chr4_3:60001079-60001098 None:intergenic 20.0%
!! GTGTGTATATATTGTATTAT+AGG - chr4_3:60001398-60001417 Msa0652300:intron 20.0%
!!! ATTTACTCTTAGAAGTATAT+TGG - chr4_3:60001624-60001643 Msa0652300:intron 20.0%
!!! CTTTTTTATAATTTCAATCC+AGG - chr4_3:60001757-60001776 Msa0652300:intron 20.0%
!! TATCATATGAAATGTTATCA+GGG + chr4_3:60002064-60002083 None:intergenic 20.0%
!! ATATCATATGAAATGTTATC+AGG + chr4_3:60002065-60002084 None:intergenic 20.0%
!! AATTTCAAAATGACAAAAGT+TGG - chr4_3:60002236-60002255 Msa0652300:intron 20.0%
!!! ATTCCAAAACAAAACTATTT+TGG + chr4_3:60002401-60002420 None:intergenic 20.0%
!!! TTTTGTTTTGGAATTATTAG+AGG - chr4_3:60002407-60002426 Msa0652300:intron 20.0%
!!! TTTGTTTTGGAATTATTAGA+GGG - chr4_3:60002408-60002427 Msa0652300:intron 20.0%
!!! TGAATTTTGAGTAATGTTTA+AGG + chr4_3:60002810-60002829 None:intergenic 20.0%
!!! TGTGACTTTTATTTCAAATT+AGG + chr4_3:60002842-60002861 None:intergenic 20.0%
!! TAAAAAAATGACCCTTAAAA+CGG - chr4_3:60003244-60003263 Msa0652300:intron 20.0%
!!! ATTTTCATCTTTATATTCCT+GGG + chr4_3:60003720-60003739 None:intergenic 20.0%
!!! AATTTTCATCTTTATATTCC+TGG + chr4_3:60003721-60003740 None:intergenic 20.0%
!!! CTATAACTAACACTTTTATT+GGG + chr4_3:60003795-60003814 None:intergenic 20.0%
!!! ACTATAACTAACACTTTTAT+TGG + chr4_3:60003796-60003815 None:intergenic 20.0%
!! AATAAATTCATGGAAGTTAT+GGG - chr4_3:60003889-60003908 Msa0652300:intron 20.0%
!! GGTTAAGAAAAAAATATTCT+TGG + chr4_3:60003945-60003964 None:intergenic 20.0%
!! TTCTTAACCATTAACAAATA+TGG - chr4_3:60003956-60003975 Msa0652300:intron 20.0%
!! TCTTAACCATTAACAAATAT+GGG - chr4_3:60003957-60003976 Msa0652300:intron 20.0%
!!! CAATTTTGTGTCAATTTTTT+AGG - chr4_3:60004187-60004206 Msa0652300:intron 20.0%
!!! TTTGTTGTAATTTGTTTACT+AGG - chr4_3:60004246-60004265 Msa0652300:intron 20.0%
!!! ATGTGTCCTTTTTTTTTTTT+TGG - chr4_3:60004793-60004812 Msa0652300:intron 20.0%
!! AGAGATCCAAAAAAAAAAAA+AGG + chr4_3:60004802-60004821 None:intergenic 20.0%
!!! TTTTTTTTTGGATCTCTTAT+AGG - chr4_3:60004805-60004824 Msa0652300:intron 20.0%
!!! TTTTTTTTGGATCTCTTATA+GGG - chr4_3:60004806-60004825 Msa0652300:intron 20.0%
!! ATTTATATTCCATAAATGAC+AGG - chr4_3:60004898-60004917 Msa0652300:intron 20.0%
!! CTATATTATTGACAAGAAAA+CGG - chr4_3:60004947-60004966 Msa0652300:intron 20.0%
!! AAGTATATTTAAACGTGAAA+AGG - chr4_3:60006103-60006122 Msa0652300:intron 20.0%
!! AGTATATTTAAACGTGAAAA+GGG - chr4_3:60006104-60006123 Msa0652300:intron 20.0%
!!! ATTGAAATGATTATTTTCGT+TGG - chr4_3:60006357-60006376 Msa0652300:intron 20.0%
!!! TGCTTTTTTTAAAAAGTTCA+AGG - chr4_3:60006432-60006451 Msa0652300:intron 20.0%
!!! GCTTTTTTTAAAAAGTTCAA+GGG - chr4_3:60006433-60006452 Msa0652300:intron 20.0%
!!! CTTTTTTTAAAAAGTTCAAG+GGG - chr4_3:60006434-60006453 Msa0652300:intron 20.0%
!! TTTCTGCAAATAGTAAATTA+TGG - chr4_3:60007039-60007058 Msa0652300:intron 20.0%
! TTGATAGATTGATTGTTCTA+TGG + chr4_3:60000519-60000538 None:intergenic 25.0%
! AATCTATCAATTCAGAGAAA+TGG - chr4_3:60000529-60000548 Msa0652300:three_prime_UTR 25.0%
! ATCTATCAATTCAGAGAAAT+GGG - chr4_3:60000530-60000549 Msa0652300:three_prime_UTR 25.0%
! CAATTGAACAAAATAGAAAG+AGG + chr4_3:60000659-60000678 None:intergenic 25.0%
! GGATTATGGCTAAAATTATT+TGG - chr4_3:60000748-60000767 Msa0652300:CDS 25.0%
! GGCTAAAATTATTTGGATTA+AGG - chr4_3:60000755-60000774 Msa0652300:CDS 25.0%
!!! AGCTGTTTTAAAAGCTATTT+TGG - chr4_3:60000884-60000903 Msa0652300:CDS 25.0%
! AAAATTGAAATTCAAGCACA+GGG + chr4_3:60001122-60001141 None:intergenic 25.0%
!!! TGCTTTTTGACATTTGTTTT+TGG - chr4_3:60001143-60001162 Msa0652300:intron 25.0%
!!! GCTTTTTGACATTTGTTTTT+GGG - chr4_3:60001144-60001163 Msa0652300:intron 25.0%
! TTTGTGGAGAATTTCATAAA+TGG - chr4_3:60001308-60001327 Msa0652300:intron 25.0%
! TTGTGGAGAATTTCATAAAT+GGG - chr4_3:60001309-60001328 Msa0652300:intron 25.0%
!! TGGGTTATATGTATTTGTTT+TGG - chr4_3:60001328-60001347 Msa0652300:intron 25.0%
!!! GTTATATGTATTTGTTTTGG+AGG - chr4_3:60001331-60001350 Msa0652300:intron 25.0%
!! TAATTGTGTGAGATGTTTTA+AGG + chr4_3:60001551-60001570 None:intergenic 25.0%
! AGAGTACAAAAAGAAACAAA+AGG - chr4_3:60001578-60001597 Msa0652300:intron 25.0%
!! CTTCTAAGAGTAAATATGTA+AGG + chr4_3:60001619-60001638 None:intergenic 25.0%
! AAAAAACAGAATCAATGGAT+GGG + chr4_3:60001706-60001725 None:intergenic 25.0%
! TAAAAAACAGAATCAATGGA+TGG + chr4_3:60001707-60001726 None:intergenic 25.0%
! TGAGTAAAAAACAGAATCAA+TGG + chr4_3:60001711-60001730 None:intergenic 25.0%
!!! ATTTTATTTTGTAGCATTGC+CGG - chr4_3:60002191-60002210 Msa0652300:intron 25.0%
!!! CATGTTTTAAAATATGACTC+CGG + chr4_3:60002213-60002232 None:intergenic 25.0%
! TTGTACTAAAACTTGAAAGA+TGG + chr4_3:60002337-60002356 None:intergenic 25.0%
!!! AGACCAAAATAGTTTTGTTT+TGG - chr4_3:60002395-60002414 Msa0652300:intron 25.0%
!!! ACTTTTGTTACTTTAAGCTT+TGG + chr4_3:60002938-60002957 None:intergenic 25.0%
!!! TTGTTAATTTGTTAATTGGG+AGG + chr4_3:60002989-60003008 None:intergenic 25.0%
!! TTCACTTAAAACCGTTTTAA+GGG + chr4_3:60003258-60003277 None:intergenic 25.0%
!! TTTCACTTAAAACCGTTTTA+AGG + chr4_3:60003259-60003278 None:intergenic 25.0%
! GTTATATTTATTTGGAAGTG+CGG + chr4_3:60003475-60003494 None:intergenic 25.0%
! CAAATAATAAGTGAAGTTGA+GGG + chr4_3:60003560-60003579 None:intergenic 25.0%
! TCAAATAATAAGTGAAGTTG+AGG + chr4_3:60003561-60003580 None:intergenic 25.0%
!!! TTTTTGGAAAATCATCTCTA+TGG - chr4_3:60003586-60003605 Msa0652300:intron 25.0%
! AAAGATGAAAATTCAATTCC+TGG - chr4_3:60003728-60003747 Msa0652300:intron 25.0%
! GAATAAATTCATGGAAGTTA+TGG - chr4_3:60003888-60003907 Msa0652300:intron 25.0%
! AAAAATATTCTTGGGAGTAA+AGG + chr4_3:60003936-60003955 None:intergenic 25.0%
!! ACTATACCCATATTTGTTAA+TGG + chr4_3:60003966-60003985 None:intergenic 25.0%
! AAAAGGTTTGACTGATTAAA+GGG + chr4_3:60004133-60004152 None:intergenic 25.0%
! AAAAAGGTTTGACTGATTAA+AGG + chr4_3:60004134-60004153 None:intergenic 25.0%
! GACAAAGCATACAATAAAAA+AGG + chr4_3:60004150-60004169 None:intergenic 25.0%
! AGTAAGTCTAAACATTCAAA+AGG - chr4_3:60004388-60004407 Msa0652300:intron 25.0%
! ATAGTTGCATAATAGTTGAA+GGG + chr4_3:60004639-60004658 None:intergenic 25.0%
!! GGAATATAAATGAACCTTTT+TGG + chr4_3:60004889-60004908 None:intergenic 25.0%
!! TTCAATTTTTGCTTATAGCT+CGG + chr4_3:60005028-60005047 None:intergenic 25.0%
!! ACTTTCAAGTAAATATGAGA+AGG + chr4_3:60005127-60005146 None:intergenic 25.0%
!!! AATGATGGATAAAACTAAAG+AGG - chr4_3:60005324-60005343 Msa0652300:intron 25.0%
! TCTTGATTGTATAAATTGCA+CGG - chr4_3:60005678-60005697 Msa0652300:intron 25.0%
! ATAGTTAATCGATAGGAAAT+TGG + chr4_3:60005927-60005946 None:intergenic 25.0%
! TTAAATATACTTATCCAAGG+CGG + chr4_3:60006095-60006114 None:intergenic 25.0%
! CGTTTAAATATACTTATCCA+AGG + chr4_3:60006098-60006117 None:intergenic 25.0%
! GCAACAAAAGATATTGAAAA+GGG + chr4_3:60006205-60006224 None:intergenic 25.0%
! AGCAACAAAAGATATTGAAA+AGG + chr4_3:60006206-60006225 None:intergenic 25.0%
!!! TCCTAAAATTTTGAAGGAAA+GGG + chr4_3:60006409-60006428 None:intergenic 25.0%
! AAAGCAAATGGTTGAAAAAA+GGG + chr4_3:60006492-60006511 None:intergenic 25.0%
! TAAAGCAAATGGTTGAAAAA+AGG + chr4_3:60006493-60006512 None:intergenic 25.0%
! ATCTATTGATGTAAAGCAAA+TGG + chr4_3:60006504-60006523 None:intergenic 25.0%
! TTACAACCTTCAATTTATGT+TGG - chr4_3:60006572-60006591 Msa0652300:intron 25.0%
! TCAACAATTAACAAAACTGA+AGG + chr4_3:60006656-60006675 None:intergenic 25.0%
TCACAAATTTCAATCGAATC+AGG - chr4_3:60000457-60000476 Msa0652300:three_prime_UTR 30.0%
CACAAATTTCAATCGAATCA+GGG - chr4_3:60000458-60000477 Msa0652300:three_prime_UTR 30.0%
TCTATCAATTCAGAGAAATG+GGG - chr4_3:60000531-60000550 Msa0652300:three_prime_UTR 30.0%
AGAAAGAGGATAATATGGAA+GGG + chr4_3:60000645-60000664 None:intergenic 30.0%
TAGAAAGAGGATAATATGGA+AGG + chr4_3:60000646-60000665 None:intergenic 30.0%
AAACTCATGTAACAGCAATT+AGG + chr4_3:60000700-60000719 None:intergenic 30.0%
!!! GCTCTTAATTTTTGGGATTA+TGG - chr4_3:60000734-60000753 Msa0652300:CDS 30.0%
ATAAGCTCTTTATCCAAACA+AGG + chr4_3:60000781-60000800 None:intergenic 30.0%
TCAAATAAGCCAATCCAAAT+AGG - chr4_3:60001010-60001029 Msa0652300:intron 30.0%
GAAAATTGAAATTCAAGCAC+AGG + chr4_3:60001123-60001142 None:intergenic 30.0%
TTTGGGTGTCAATATTTCAA+TGG - chr4_3:60001161-60001180 Msa0652300:intron 30.0%
! TATGAATTTCTTTTGGCGTT+TGG - chr4_3:60001274-60001293 Msa0652300:intron 30.0%
! ATGAATTTCTTTTGGCGTTT+GGG - chr4_3:60001275-60001294 Msa0652300:intron 30.0%
GACAAGAATAACAAATACCA+TGG + chr4_3:60001369-60001388 None:intergenic 30.0%
!!! AGGGGAGATATTTTAATGTA+GGG - chr4_3:60002015-60002034 Msa0652300:intron 30.0%
GGAGATGTGTTTATAAACTT+AGG + chr4_3:60002114-60002133 None:intergenic 30.0%
! AAAAACAGGTAAATTTTGCG+AGG + chr4_3:60002145-60002164 None:intergenic 30.0%
! TAAAATAGAGTTTTGCACCA+TGG - chr4_3:60002279-60002298 Msa0652300:intron 30.0%
!! TTTGTTACTTTAAGCTTTGG+AGG + chr4_3:60002935-60002954 None:intergenic 30.0%
ATGGAGAAGAGTAATAGTTA+GGG - chr4_3:60003211-60003230 Msa0652300:intron 30.0%
AGAAAACATATAGAACTCCA+TGG - chr4_3:60003837-60003856 Msa0652300:intron 30.0%
GAAAACATATAGAACTCCAT+GGG - chr4_3:60003838-60003857 Msa0652300:intron 30.0%
GAATTTATTCACATGTGAGA+AGG + chr4_3:60003878-60003897 None:intergenic 30.0%
CTCACATGTGAATAAATTCA+TGG - chr4_3:60003879-60003898 Msa0652300:intron 30.0%
AATGTGATTCCTAAACTTGA+AGG - chr4_3:60004001-60004020 Msa0652300:intron 30.0%
TAGGAAGAAGAACTGAAAAA+GGG - chr4_3:60004265-60004284 Msa0652300:intron 30.0%
! AAACATTCAAAAGGTATGTG+TGG - chr4_3:60004397-60004416 Msa0652300:intron 30.0%
! AAAAGGTATGTGTGGTTATT+TGG - chr4_3:60004405-60004424 Msa0652300:intron 30.0%
AGGTACTAGAAAAACACAAT+AGG + chr4_3:60004445-60004464 None:intergenic 30.0%
CATCATTAGAAACTGAGTAT+GGG + chr4_3:60004471-60004490 None:intergenic 30.0%
TCATCATTAGAAACTGAGTA+TGG + chr4_3:60004472-60004491 None:intergenic 30.0%
TATTCTACTATACAGACAAG+AGG - chr4_3:60004500-60004519 Msa0652300:intron 30.0%
ATTCTACTATACAGACAAGA+GGG - chr4_3:60004501-60004520 Msa0652300:intron 30.0%
!!! TTCCAACATTTACTTTTTCC+TGG - chr4_3:60004572-60004591 Msa0652300:intron 30.0%
TAGTTGCATAATAGTTGAAG+GGG + chr4_3:60004638-60004657 None:intergenic 30.0%
CATAGTTGCATAATAGTTGA+AGG + chr4_3:60004640-60004659 None:intergenic 30.0%
CATGGTTGCTGAAATATAAA+AGG + chr4_3:60004680-60004699 None:intergenic 30.0%
! CTTTTATATTTCAGCAACCA+TGG - chr4_3:60004678-60004697 Msa0652300:intron 30.0%
GATCTCTTATAGGGTAAATA+GGG - chr4_3:60004815-60004834 Msa0652300:intron 30.0%
CTTTCAACTTTCATCCAAAA+AGG - chr4_3:60004872-60004891 Msa0652300:intron 30.0%
AGTAGTTCCTGTATAACAAA+GGG - chr4_3:60004921-60004940 Msa0652300:intron 30.0%
! TCAATTTTTGCTTATAGCTC+GGG + chr4_3:60005027-60005046 None:intergenic 30.0%
GATAAAAACAGAGCTTCATA+AGG + chr4_3:60005200-60005219 None:intergenic 30.0%
AAGGAAGATGAAATCAATGT+GGG + chr4_3:60005254-60005273 None:intergenic 30.0%
TAAGGAAGATGAAATCAATG+TGG + chr4_3:60005255-60005274 None:intergenic 30.0%
ATGGCAGTTAGTGTTTATTA+AGG + chr4_3:60005273-60005292 None:intergenic 30.0%
! AGAAGTTCAAAGTTGGTTTA+GGG + chr4_3:60005297-60005316 None:intergenic 30.0%
! AAGAAGTTCAAAGTTGGTTT+AGG + chr4_3:60005298-60005317 None:intergenic 30.0%
TAAACCAACTTTGAACTTCT+TGG - chr4_3:60005297-60005316 Msa0652300:intron 30.0%
ATTGATTACAAAGAAGTTCG+AGG + chr4_3:60005509-60005528 None:intergenic 30.0%
!! AAACTTGGGAATATTGACTT+GGG + chr4_3:60005576-60005595 None:intergenic 30.0%
ACAATCAAGAACTTACTGAT+AGG + chr4_3:60005668-60005687 None:intergenic 30.0%
CTTGATTGTATAAATTGCAC+GGG - chr4_3:60005679-60005698 Msa0652300:intron 30.0%
! TTCCTATCGATTAACTATAG+TGG - chr4_3:60005929-60005948 Msa0652300:intron 30.0%
!!! CAATATCTTTTGTTGCTTTG+AGG - chr4_3:60006209-60006228 Msa0652300:CDS 30.0%
! TCCCTTTCCTTCAAAATTTT+AGG - chr4_3:60006405-60006424 Msa0652300:intron 30.0%
!! CTCCTAAAATTTTGAAGGAA+AGG + chr4_3:60006410-60006429 None:intergenic 30.0%
! GCAAACTCCTAAAATTTTGA+AGG + chr4_3:60006415-60006434 None:intergenic 30.0%
TGAAAAAAGGGAACGATAAT+AGG + chr4_3:60006480-60006499 None:intergenic 30.0%
TCACTTCCAACATAAATTGA+AGG + chr4_3:60006581-60006600 None:intergenic 30.0%
!!! TTCGCCTATCGAAATTTTTT+GGG - chr4_3:60006964-60006983 Msa0652300:intron 30.0%
ATGTCCCAAAAAATTTCGAT+AGG + chr4_3:60006971-60006990 None:intergenic 30.0%
!! TCAAGAAGTTTGTTGACTTT+AGG - chr4_3:60007130-60007149 Msa0652300:CDS 30.0%
TTGATTGATGTAGTGTGAAA+AGG - chr4_3:60007153-60007172 Msa0652300:CDS 30.0%
TGATTGATGTAGTGTGAAAA+GGG - chr4_3:60007154-60007173 Msa0652300:CDS 30.0%
TGATGTTTGAATAACACTTC+TGG - chr4_3:60007220-60007239 Msa0652300:five_prime_UTR 30.0%
TTGAATAACACTTCTGGATT+TGG - chr4_3:60007226-60007245 Msa0652300:five_prime_UTR 30.0%
!! ATTTGGATTAAGGCCTTGTT+TGG - chr4_3:60000765-60000784 Msa0652300:CDS 35.0%
! CTGTTTTCAGCTTATGTTCA+TGG + chr4_3:60000915-60000934 None:intergenic 35.0%
CATAAGCTGAAAACAGCATA+TGG - chr4_3:60000919-60000938 Msa0652300:CDS 35.0%
ATAAGTTCTGTGAGACTGTT+TGG + chr4_3:60000976-60000995 None:intergenic 35.0%
CAAGTTATCAAGGATACTTG+GGG + chr4_3:60001036-60001055 None:intergenic 35.0%
CCAAGTTATCAAGGATACTT+GGG + chr4_3:60001037-60001056 None:intergenic 35.0%
TCCAAGTTATCAAGGATACT+TGG + chr4_3:60001038-60001057 None:intergenic 35.0%
!! ACTTGATGGTTCTAGCTTTA+CGG + chr4_3:60001065-60001084 None:intergenic 35.0%
CATTATTCAAGCAGATGTGA+AGG + chr4_3:60001194-60001213 None:intergenic 35.0%
GAATTGAAACTTACTACGCA+TGG - chr4_3:60001216-60001235 Msa0652300:intron 35.0%
!!! TTTGGGTTGATATGGTTTTG+TGG - chr4_3:60001292-60001311 Msa0652300:intron 35.0%
!!! ATGTTTTAAGGCTAGCCAAA+CGG + chr4_3:60001539-60001558 None:intergenic 35.0%
AAACATCTCACACAATTACC+TGG - chr4_3:60001553-60001572 Msa0652300:intron 35.0%
AACATCTCACACAATTACCT+GGG - chr4_3:60001554-60001573 Msa0652300:intron 35.0%
! TTTCTTTTTGTACTCTTCCC+AGG + chr4_3:60001574-60001593 None:intergenic 35.0%
ATTTCAATCCAGGTCATTGT+TGG - chr4_3:60001767-60001786 Msa0652300:intron 35.0%
TTTCAATCCAGGTCATTGTT+GGG - chr4_3:60001768-60001787 Msa0652300:intron 35.0%
TTATTACAATGAGGTGCACA+TGG + chr4_3:60001868-60001887 None:intergenic 35.0%
ACCTCATTGTAATAAGTTCG+AGG - chr4_3:60001873-60001892 Msa0652300:intron 35.0%
TCCTCGAACTTATTACAATG+AGG + chr4_3:60001877-60001896 None:intergenic 35.0%
TCATTGTAATAAGTTCGAGG+AGG - chr4_3:60001876-60001895 Msa0652300:intron 35.0%
CATTGTAATAAGTTCGAGGA+GGG - chr4_3:60001877-60001896 Msa0652300:intron 35.0%
!! AGTTTGGCTTTATTTCTGCA+AGG - chr4_3:60001969-60001988 Msa0652300:intron 35.0%
!! GTTTGGCTTTATTTCTGCAA+GGG - chr4_3:60001970-60001989 Msa0652300:intron 35.0%
! TATTTCTGCAAGGGTTTGTT+TGG - chr4_3:60001979-60001998 Msa0652300:intron 35.0%
! GGTTTGTTTGGTTCAAACAA+GGG - chr4_3:60001991-60002010 Msa0652300:intron 35.0%
! GTTTGTTTGGTTCAAACAAG+GGG - chr4_3:60001992-60002011 Msa0652300:intron 35.0%
!!! GAGGGGAGATATTTTAATGT+AGG - chr4_3:60002014-60002033 Msa0652300:intron 35.0%
!!! GGGGAGATATTTTAATGTAG+GGG - chr4_3:60002016-60002035 Msa0652300:intron 35.0%
TCAAAATGACAAAAGTTGGC+TGG - chr4_3:60002240-60002259 Msa0652300:intron 35.0%
TAAGAACGCAGTTTACTTGT+TGG - chr4_3:60002305-60002324 Msa0652300:intron 35.0%
! TTTCAGGTCTCTTAAAGTAC+AGG + chr4_3:60002491-60002510 None:intergenic 35.0%
CAATTGATTAAGAGGAGTTG+AGG + chr4_3:60002531-60002550 None:intergenic 35.0%
GGAGGTTCTATTTCAAATGA+AGG + chr4_3:60002627-60002646 None:intergenic 35.0%
TGAAGAGAAGAGAACAAAGA+TGG - chr4_3:60003048-60003067 Msa0652300:intron 35.0%
GAAGAGAAGAGAACAAAGAT+GGG - chr4_3:60003049-60003068 Msa0652300:intron 35.0%
GATGGAGAAGAGTAATAGTT+AGG - chr4_3:60003210-60003229 Msa0652300:intron 35.0%
AAAATTAAGCGCTTGTCGAA+AGG - chr4_3:60003516-60003535 Msa0652300:intron 35.0%
ATAAGTGAAGTTGAGGGTAA+GGG + chr4_3:60003554-60003573 None:intergenic 35.0%
AATAAGTGAAGTTGAGGGTA+AGG + chr4_3:60003555-60003574 None:intergenic 35.0%
! ATTGAAGTTGACTCTTACGA+CGG + chr4_3:60003632-60003651 None:intergenic 35.0%
ATCACAATTACCAACTGAAG+AGG - chr4_3:60003650-60003669 Msa0652300:intron 35.0%
TCACAATTACCAACTGAAGA+GGG - chr4_3:60003651-60003670 Msa0652300:intron 35.0%
TTCCTGGGTAAGTTATTCTT+GGG + chr4_3:60003705-60003724 None:intergenic 35.0%
ATTCCTGGGTAAGTTATTCT+TGG + chr4_3:60003706-60003725 None:intergenic 35.0%
TTATTCACATGTGAGAAGGT+GGG + chr4_3:60003874-60003893 None:intergenic 35.0%
TTTATTCACATGTGAGAAGG+TGG + chr4_3:60003875-60003894 None:intergenic 35.0%
AAGTTTAGGAATCACATTCC+CGG + chr4_3:60003999-60004018 None:intergenic 35.0%
TGCTGATGATCTAATCCATA+GGG + chr4_3:60004034-60004053 None:intergenic 35.0%
ATGCTGATGATCTAATCCAT+AGG + chr4_3:60004035-60004054 None:intergenic 35.0%
CTAGGAAGAAGAACTGAAAA+AGG - chr4_3:60004264-60004283 Msa0652300:intron 35.0%
AGGAAGAAGAACTGAAAAAG+GGG - chr4_3:60004266-60004285 Msa0652300:intron 35.0%
AGATGCAGATAAGATGATGA+GGG - chr4_3:60004300-60004319 Msa0652300:intron 35.0%
TAGAAACTGAGTATGGGAAA+AGG + chr4_3:60004465-60004484 None:intergenic 35.0%
CTCCAGGAAAAAGTAAATGT+TGG + chr4_3:60004577-60004596 None:intergenic 35.0%
CAAATTAAACACTCTTCTCC+AGG + chr4_3:60004593-60004612 None:intergenic 35.0%
TATTTCAGCAACCATGGTAT+AGG - chr4_3:60004684-60004703 Msa0652300:intron 35.0%
GGATCTCTTATAGGGTAAAT+AGG - chr4_3:60004814-60004833 Msa0652300:intron 35.0%
GAGTAGTTCCTGTATAACAA+AGG - chr4_3:60004920-60004939 Msa0652300:intron 35.0%
! ATAGTCTCCCTTTGTTATAC+AGG + chr4_3:60004931-60004950 None:intergenic 35.0%
! CAATTTTTGCTTATAGCTCG+GGG + chr4_3:60005026-60005045 None:intergenic 35.0%
ATCTACAACACAAAGTTCAG+AGG + chr4_3:60005076-60005095 None:intergenic 35.0%
TGAGAAGGAAAGTTAGTTAG+AGG + chr4_3:60005112-60005131 None:intergenic 35.0%
!!! AGTTTGCCCCTTTTTTATTG+AGG - chr4_3:60005144-60005163 Msa0652300:intron 35.0%
!!! GTTTGCCCCTTTTTTATTGA+GGG - chr4_3:60005145-60005164 Msa0652300:intron 35.0%
CGATTCCCTCAATAAAAAAG+GGG + chr4_3:60005153-60005172 None:intergenic 35.0%
CCGATTCCCTCAATAAAAAA+GGG + chr4_3:60005154-60005173 None:intergenic 35.0%
!!! CCCTTTTTTATTGAGGGAAT+CGG - chr4_3:60005151-60005170 Msa0652300:intron 35.0%
AAATCTGATGGTTTGATGAG+TGG + chr4_3:60005225-60005244 None:intergenic 35.0%
! TTCAAAGTTGGTTTAGGGAA+TGG + chr4_3:60005292-60005311 None:intergenic 35.0%
ACAACCAAGAAGTTCAAAGT+TGG + chr4_3:60005304-60005323 None:intergenic 35.0%
GAACTTCTTGGTTGTAATGA+TGG - chr4_3:60005309-60005328 Msa0652300:intron 35.0%
!! AAACTAAAGAGGCACTAGTT+TGG - chr4_3:60005335-60005354 Msa0652300:intron 35.0%
AAGTTCGAGGAAATGAGAAA+TGG + chr4_3:60005496-60005515 None:intergenic 35.0%
! CAAACTTGGGAATATTGACT+TGG + chr4_3:60005577-60005596 None:intergenic 35.0%
CCTAATCATCACTCAAACTT+GGG + chr4_3:60005590-60005609 None:intergenic 35.0%
CCAAGTTTGAGTGATGATTA+GGG - chr4_3:60005588-60005607 Msa0652300:intron 35.0%
ATCAAGAACTTACTGATAGG+AGG + chr4_3:60005665-60005684 None:intergenic 35.0%
! TAATCTGAAAATGGCTTGGA+TGG + chr4_3:60005734-60005753 None:intergenic 35.0%
AGACTAATCTGAAAATGGCT+TGG + chr4_3:60005738-60005757 None:intergenic 35.0%
GGGATAGACTAATCTGAAAA+TGG + chr4_3:60005743-60005762 None:intergenic 35.0%
! CTGGAAATTATGGTTTTCTC+TGG - chr4_3:60005784-60005803 Msa0652300:intron 35.0%
GTCCACTATAGTTAATCGAT+AGG + chr4_3:60005934-60005953 None:intergenic 35.0%
GACATGTCCTATATAACAGT+TGG - chr4_3:60005951-60005970 Msa0652300:intron 35.0%
GAACAAGCCAACTGTTATAT+AGG + chr4_3:60005961-60005980 None:intergenic 35.0%
!! ATAACAGTTGGCTTGTTCAA+TGG - chr4_3:60005963-60005982 Msa0652300:intron 35.0%
! ATAGATTCGGTTAGAGTTGA+TGG + chr4_3:60005989-60006008 None:intergenic 35.0%
TTTAAAAAGGGTCAATCCGA+AGG + chr4_3:60006165-60006184 None:intergenic 35.0%
AAGTGACAAGACATTGGAAA+GGG + chr4_3:60006306-60006325 None:intergenic 35.0%
AAAGTGACAAGACATTGGAA+AGG + chr4_3:60006307-60006326 None:intergenic 35.0%
GTAACAAAGTGACAAGACAT+TGG + chr4_3:60006312-60006331 None:intergenic 35.0%
!! TGTCTTGTCACTTTGTTACA+AGG - chr4_3:60006313-60006332 Msa0652300:intron 35.0%
GAGAAGCTAGAGTTATAAGT+CGG + chr4_3:60006604-60006623 None:intergenic 35.0%
! CTTATAACTCTAGCTTCTCT+AGG - chr4_3:60006605-60006624 Msa0652300:intron 35.0%
! TGTAACTGATTCTGATTACC+TGG - chr4_3:60006630-60006649 Msa0652300:intron 35.0%
AATTAACAAAACTGAAGGCC+AGG + chr4_3:60006651-60006670 None:intergenic 35.0%
AAGTCAAAAAGCAAGGATTC+TGG - chr4_3:60006912-60006931 Msa0652300:intron 35.0%
AAAAATTTCGATAGGCGAAC+TGG + chr4_3:60006963-60006982 None:intergenic 35.0%
!!! GTTCGCCTATCGAAATTTTT+TGG - chr4_3:60006963-60006982 Msa0652300:intron 35.0%
!! GTTGATAGTGGTTGAATACT+TGG - chr4_3:60006996-60007015 Msa0652300:intron 35.0%
GATTGATGTAGTGTGAAAAG+GGG - chr4_3:60007155-60007174 Msa0652300:CDS 35.0%
AGGAGCTATTATTTCAGAGT+GGG + chr4_3:60007260-60007279 None:intergenic 35.0%
AAGGAGCTATTATTTCAGAG+TGG + chr4_3:60007261-60007280 None:intergenic 35.0%
! CTCCTTTTCGTGATAACTTT+AGG - chr4_3:60007275-60007294 Msa0652300:five_prime_UTR 35.0%
AGCCTAAAGTTATCACGAAA+AGG + chr4_3:60007280-60007299 None:intergenic 35.0%
TTTAGGCTTATCCAAGAACA+AGG - chr4_3:60007292-60007311 Msa0652300:five_prime_UTR 35.0%
CTTATACACTAGCGCTAATC+AGG + chr4_3:60000817-60000836 None:intergenic 40.0%
! CCCAAGTATCCTTGATAACT+TGG - chr4_3:60001034-60001053 Msa0652300:intron 40.0%
! ACGGCTTTTCCAAGTTATCA+AGG + chr4_3:60001046-60001065 None:intergenic 40.0%
!!! TTTTGGCGTTTGGGTTGATA+TGG - chr4_3:60001284-60001303 Msa0652300:intron 40.0%
GCTTTATGATGCTCGAATGT+TGG - chr4_3:60001429-60001448 Msa0652300:intron 40.0%
TTCCTGTACCGTTATTGATG+AGG - chr4_3:60001465-60001484 Msa0652300:intron 40.0%
GTTCATTTCATTCACCAGAG+TGG - chr4_3:60001505-60001524 Msa0652300:intron 40.0%
!!! TGTTTTAAGGCTAGCCAAAC+GGG + chr4_3:60001538-60001557 None:intergenic 40.0%
TGTGTACATATGAGAGACAG+AGG - chr4_3:60001657-60001676 Msa0652300:intron 40.0%
GTGTACATATGAGAGACAGA+GGG - chr4_3:60001658-60001677 Msa0652300:intron 40.0%
TGTACATATGAGAGACAGAG+GGG - chr4_3:60001659-60001678 Msa0652300:intron 40.0%
TTCAGGACTGATCAGACATA+TGG + chr4_3:60001939-60001958 None:intergenic 40.0%
CCAAACTTCAGACACAATTC+AGG + chr4_3:60001956-60001975 None:intergenic 40.0%
! CCTGAATTGTGTCTGAAGTT+TGG - chr4_3:60001953-60001972 Msa0652300:intron 40.0%
! GGGTTTGTTTGGTTCAAACA+AGG - chr4_3:60001990-60002009 Msa0652300:intron 40.0%
! AACAGGTAAATTTTGCGAGG+AGG + chr4_3:60002142-60002161 None:intergenic 40.0%
AAACTGCGTTCTTACAACCA+TGG + chr4_3:60002299-60002318 None:intergenic 40.0%
TCTTGCAGTGTAACAATCGT+CGG + chr4_3:60002378-60002397 None:intergenic 40.0%
!! GAGAAAGTCTTGTTGTGTGA+CGG - chr4_3:60002437-60002456 Msa0652300:intron 40.0%
!! AGAAAGTCTTGTTGTGTGAC+GGG - chr4_3:60002438-60002457 Msa0652300:intron 40.0%
TTAAGAGGAGTTGAGGCAAA+GGG + chr4_3:60002524-60002543 None:intergenic 40.0%
ATTAAGAGGAGTTGAGGCAA+AGG + chr4_3:60002525-60002544 None:intergenic 40.0%
!! GGGAGTGTCAATTGATTAAG+AGG + chr4_3:60002539-60002558 None:intergenic 40.0%
AAGGATCAAGTAGAGAGAAG+GGG + chr4_3:60002559-60002578 None:intergenic 40.0%
CAAGGATCAAGTAGAGAGAA+GGG + chr4_3:60002560-60002579 None:intergenic 40.0%
ACAAGGATCAAGTAGAGAGA+AGG + chr4_3:60002561-60002580 None:intergenic 40.0%
AGAACAAGTCTGAGAATGAG+AGG + chr4_3:60002601-60002620 None:intergenic 40.0%
! TCTCATTCTCAGACTTGTTC+TGG - chr4_3:60002600-60002619 Msa0652300:intron 40.0%
! CTCATTCTCAGACTTGTTCT+GGG - chr4_3:60002601-60002620 Msa0652300:intron 40.0%
TGAGATGTGAAGAGAAGAGA+TGG - chr4_3:60003091-60003110 Msa0652300:intron 40.0%
GAGATGTGAAGAGAAGAGAT+GGG - chr4_3:60003092-60003111 Msa0652300:intron 40.0%
AGAGATGATGAGATGAGAAG+AGG - chr4_3:60003126-60003145 Msa0652300:intron 40.0%
CTGCAAACACAACTTCTTCA+TGG + chr4_3:60003174-60003193 None:intergenic 40.0%
TGTGTTTGCAGCTGTGTATT+TGG - chr4_3:60003183-60003202 Msa0652300:CDS 40.0%
!! AGCTGTGTATTTGGTTCTGA+TGG - chr4_3:60003192-60003211 Msa0652300:CDS 40.0%
! TTGAAGTTGACTCTTACGAC+GGG + chr4_3:60003631-60003650 None:intergenic 40.0%
TTCCCAAGAATAACTTACCC+AGG - chr4_3:60003700-60003719 Msa0652300:intron 40.0%
TATTCACATGTGAGAAGGTG+GGG + chr4_3:60003873-60003892 None:intergenic 40.0%
GGGTATAGTCATTCACTTAC+CGG - chr4_3:60003977-60003996 Msa0652300:intron 40.0%
GGTATAGTCATTCACTTACC+GGG - chr4_3:60003978-60003997 Msa0652300:intron 40.0%
CTGATGATCTAATCCATAGG+GGG + chr4_3:60004032-60004051 None:intergenic 40.0%
GCTGATGATCTAATCCATAG+GGG + chr4_3:60004033-60004052 None:intergenic 40.0%
GGAAGAAGAACTGAAAAAGG+GGG - chr4_3:60004267-60004286 Msa0652300:intron 40.0%
CAGATGCAGATAAGATGATG+AGG - chr4_3:60004299-60004318 Msa0652300:intron 40.0%
! ATAAGATGATGAGGGAGTAC+AGG - chr4_3:60004308-60004327 Msa0652300:intron 40.0%
! TAAGATGATGAGGGAGTACA+GGG - chr4_3:60004309-60004328 Msa0652300:intron 40.0%
ACTAGAGTGATTTCTACCCT+GGG + chr4_3:60004368-60004387 None:intergenic 40.0%
TACTAGAGTGATTTCTACCC+TGG + chr4_3:60004369-60004388 None:intergenic 40.0%
GCATAGCAGCAGAAAAAGAA+AGG - chr4_3:60004540-60004559 Msa0652300:intron 40.0%
ATTATGCAACTATGCTCTGC+TGG - chr4_3:60004646-60004665 Msa0652300:intron 40.0%
CCATAACTAGTCCTATACCA+TGG + chr4_3:60004698-60004717 None:intergenic 40.0%
!! CCATGGTATAGGACTAGTTA+TGG - chr4_3:60004695-60004714 Msa0652300:intron 40.0%
GAAAGTCGCTGACAAATTAG+AGG + chr4_3:60004857-60004876 None:intergenic 40.0%
! GGAACTACTCCTGTCATTTA+TGG + chr4_3:60004910-60004929 None:intergenic 40.0%
CCATAGGAATTTACCTTGCA+GGG + chr4_3:60005003-60005022 None:intergenic 40.0%
ACAAAGTTCAGAGGCAAGAA+GGG + chr4_3:60005067-60005086 None:intergenic 40.0%
! GCCGATTCCCTCAATAAAAA+AGG + chr4_3:60005155-60005174 None:intergenic 40.0%
CCCTAATGGTCTACTTATGT+GGG + chr4_3:60005177-60005196 None:intergenic 40.0%
CCCACATAAGTAGACCATTA+GGG - chr4_3:60005174-60005193 Msa0652300:intron 40.0%
AAGATGAAATCAATGTGGGC+TGG + chr4_3:60005250-60005269 None:intergenic 40.0%
TAGCTCCACTATCAATGAGT+GGG - chr4_3:60005376-60005395 Msa0652300:intron 40.0%
CTTTACATATGGCCTCTTCA+AGG + chr4_3:60005440-60005459 None:intergenic 40.0%
! AGAGGTGCACTCTTTACATA+TGG + chr4_3:60005451-60005470 None:intergenic 40.0%
! TATGTAAAGAGTGCACCTCT+TGG - chr4_3:60005451-60005470 Msa0652300:intron 40.0%
CAGTGTAATGAATGTCCAAG+AGG + chr4_3:60005469-60005488 None:intergenic 40.0%
!! ATTGACTTGGGAAAGGATGA+GGG + chr4_3:60005564-60005583 None:intergenic 40.0%
!! TATTGACTTGGGAAAGGATG+AGG + chr4_3:60005565-60005584 None:intergenic 40.0%
!! TGGGAATATTGACTTGGGAA+AGG + chr4_3:60005571-60005590 None:intergenic 40.0%
CCCAAGTTTGAGTGATGATT+AGG - chr4_3:60005587-60005606 Msa0652300:intron 40.0%
CCCTAATCATCACTCAAACT+TGG + chr4_3:60005591-60005610 None:intergenic 40.0%
ACTTACTGATAGGAGGAATG+AGG + chr4_3:60005658-60005677 None:intergenic 40.0%
! CCAACGGGAAATTTTCTTAG+AGG + chr4_3:60005705-60005724 None:intergenic 40.0%
! CCTCTAAGAAAATTTCCCGT+TGG - chr4_3:60005702-60005721 Msa0652300:intron 40.0%
! TTATGGTTTTCTCTGGACGT+AGG - chr4_3:60005791-60005810 Msa0652300:intron 40.0%
! TATGGTTTTCTCTGGACGTA+GGG - chr4_3:60005792-60005811 Msa0652300:intron 40.0%
TAGAATGTGGGAATATCCCA+TGG - chr4_3:60005849-60005868 Msa0652300:intron 40.0%
GAGGATCGAAGGAATAGATT+CGG + chr4_3:60006002-60006021 None:intergenic 40.0%
!!! TCTTTTGTTGCTTTGAGGTC+TGG - chr4_3:60006214-60006233 Msa0652300:CDS 40.0%
!! TGTCACTTTGTTACAAGGTC+TGG - chr4_3:60006318-60006337 Msa0652300:intron 40.0%
GTTACAAGGTCTGGAAGAAA+CGG - chr4_3:60006327-60006346 Msa0652300:intron 40.0%
GGGAACGATAATAGGACAAA+AGG + chr4_3:60006472-60006491 None:intergenic 40.0%
GATCTTCTTGAATGCTGCAA+TGG + chr4_3:60006777-60006796 None:intergenic 40.0%
AGAGTATGAGGATGATGAAG+AGG + chr4_3:60006814-60006833 None:intergenic 40.0%
! TTCACTACTGGAAGAGTATG+AGG + chr4_3:60006826-60006845 None:intergenic 40.0%
CATCAAAAAGATCGAAGTCC+AGG - chr4_3:60006859-60006878 Msa0652300:intron 40.0%
GAAGCACAAGTCAAAAAGCA+AGG - chr4_3:60006905-60006924 Msa0652300:intron 40.0%
ATCGAATCAGGGTCTAACTG+TGG - chr4_3:60000469-60000488 Msa0652300:three_prime_UTR 45.0%
ACAAAGCTATGCAGAGAGCA+AGG - chr4_3:60000567-60000586 Msa0652300:three_prime_UTR 45.0%
ATGCCATCTTCAACCTCATC+GGG + chr4_3:60000614-60000633 None:intergenic 45.0%
CATGCCATCTTCAACCTCAT+CGG + chr4_3:60000615-60000634 None:intergenic 45.0%
TACTTGGGGCCTATTTGGAT+TGG + chr4_3:60001022-60001041 None:intergenic 45.0%
AAGGATACTTGGGGCCTATT+TGG + chr4_3:60001027-60001046 None:intergenic 45.0%
GTCCTCATCAATAACGGTAC+AGG + chr4_3:60001470-60001489 None:intergenic 45.0%
GCGACAGTCCTCATCAATAA+CGG + chr4_3:60001476-60001495 None:intergenic 45.0%
TTATTGATGAGGACTGTCGC+AGG - chr4_3:60001476-60001495 Msa0652300:intron 45.0%
GTACAAACCCAACAATGACC+TGG + chr4_3:60001778-60001797 None:intergenic 45.0%
GATCAGACATATGGAGCAGA+GGG + chr4_3:60001930-60001949 None:intergenic 45.0%
TGATCAGACATATGGAGCAG+AGG + chr4_3:60001931-60001950 None:intergenic 45.0%
! TGTTTGGTTCAAACAAGGGG+AGG - chr4_3:60001995-60002014 Msa0652300:intron 45.0%
! GTTTGGTTCAAACAAGGGGA+GGG - chr4_3:60001996-60002015 Msa0652300:intron 45.0%
! TTTGGTTCAAACAAGGGGAG+GGG - chr4_3:60001997-60002016 Msa0652300:intron 45.0%
! AAATTTTGCGAGGAGGAGAG+AGG + chr4_3:60002135-60002154 None:intergenic 45.0%
!! AAAGGGGGTAAAGGTGTTTC+AGG + chr4_3:60002507-60002526 None:intergenic 45.0%
TAAGAGGAGTTGAGGCAAAG+GGG + chr4_3:60002523-60002542 None:intergenic 45.0%
GTCTGAGAATGAGAGGTTGA+GGG + chr4_3:60002594-60002613 None:intergenic 45.0%
AGTCTGAGAATGAGAGGTTG+AGG + chr4_3:60002595-60002614 None:intergenic 45.0%
CTGTTGTCAAAGCGGAAATG+CGG - chr4_3:60002678-60002697 Msa0652300:intron 45.0%
!! GCTTTGGAGGCTTAAAGTGT+TGG + chr4_3:60002922-60002941 None:intergenic 45.0%
GATGAGATGAGAAGAGGAGA+TGG - chr4_3:60003132-60003151 Msa0652300:intron 45.0%
ATTAAGCGCTTGTCGAAAGG+TGG - chr4_3:60003519-60003538 Msa0652300:intron 45.0%
AAACAAACGCCCTCTTCAGT+TGG + chr4_3:60003663-60003682 None:intergenic 45.0%
ATGGGAAGTTATCCCATTCC+AGG - chr4_3:60003907-60003926 Msa0652300:intron 45.0%
TGGGAAGTTATCCCATTCCA+GGG - chr4_3:60003908-60003927 Msa0652300:intron 45.0%
GAGTAAAGGTTCCCTGGAAT+GGG + chr4_3:60003922-60003941 None:intergenic 45.0%
CCCTGCAAGGTAAATTCCTA+TGG - chr4_3:60005000-60005019 Msa0652300:intron 45.0%
GCCATAGGAATTTACCTTGC+AGG + chr4_3:60005004-60005023 None:intergenic 45.0%
CAAAGTTCAGAGGCAAGAAG+GGG + chr4_3:60005066-60005085 None:intergenic 45.0%
CACAAAGTTCAGAGGCAAGA+AGG + chr4_3:60005068-60005087 None:intergenic 45.0%
GCCCACATAAGTAGACCATT+AGG - chr4_3:60005173-60005192 Msa0652300:intron 45.0%
GCCCTAATGGTCTACTTATG+TGG + chr4_3:60005178-60005197 None:intergenic 45.0%
AGAGCTTCATAAGGCCCTAA+TGG + chr4_3:60005191-60005210 None:intergenic 45.0%
!! CTAAAGAGGCACTAGTTTGG+CGG - chr4_3:60005338-60005357 Msa0652300:intron 45.0%
CTAGCTCCACTATCAATGAG+TGG - chr4_3:60005375-60005394 Msa0652300:intron 45.0%
GGATACCCACTCATTGATAG+TGG + chr4_3:60005384-60005403 None:intergenic 45.0%
AATTGCTGACAACGACTCCT+TGG - chr4_3:60005526-60005545 Msa0652300:intron 45.0%
ATTGCTGACAACGACTCCTT+GGG - chr4_3:60005527-60005546 Msa0652300:intron 45.0%
AAAGGATGAGGGAGAATGAC+TGG + chr4_3:60005553-60005572 None:intergenic 45.0%
!! GTGATGATTAGGGCACTGAT+TGG - chr4_3:60005598-60005617 Msa0652300:intron 45.0%
! CTGAAAATGGCTTGGATGGA+AGG + chr4_3:60005730-60005749 None:intergenic 45.0%
CATAATTTCCAGCCCCAACA+AGG + chr4_3:60005776-60005795 None:intergenic 45.0%
CTTGTTGGGGCTGGAAATTA+TGG - chr4_3:60005774-60005793 Msa0652300:intron 45.0%
TTGCCATGCGACTAGAATGT+GGG - chr4_3:60005837-60005856 Msa0652300:intron 45.0%
ATTCCCACATTCTAGTCGCA+TGG + chr4_3:60005843-60005862 None:intergenic 45.0%
AGAGTTCACCAACTTGGCAA+GGG + chr4_3:60005886-60005905 None:intergenic 45.0%
AAGAGTTCACCAACTTGGCA+AGG + chr4_3:60005887-60005906 None:intergenic 45.0%
!! TTGCCAAGTTGGTGAACTCT+TGG - chr4_3:60005886-60005905 Msa0652300:intron 45.0%
!! TGCCAAGTTGGTGAACTCTT+GGG - chr4_3:60005887-60005906 Msa0652300:intron 45.0%
TACCCAAGAGTTCACCAACT+TGG + chr4_3:60005892-60005911 None:intergenic 45.0%
TAGTACAAGGGGCTCTTTCT+CGG + chr4_3:60006024-60006043 None:intergenic 45.0%
ATGCCCGATGACTAGTACAA+GGG + chr4_3:60006036-60006055 None:intergenic 45.0%
AATCCGAAGGACCTTGGATT+GGG + chr4_3:60006152-60006171 None:intergenic 45.0%
TTGAGGTCTGGAAGAAATCG+AGG - chr4_3:60006226-60006245 Msa0652300:intron 45.0%
CTTGAATGCTGCAATGGAAG+AGG + chr4_3:60006771-60006790 None:intergenic 45.0%
GATGATGAAGAGGAGCTAGA+TGG + chr4_3:60006804-60006823 None:intergenic 45.0%
TCTCTCTTCGTCTTCACTAC+TGG + chr4_3:60006838-60006857 None:intergenic 45.0%
! TCTGGAACCGATAGTGAAGA+TGG - chr4_3:60006930-60006949 Msa0652300:intron 45.0%
!! GGGACATCAAGAGTTGATAG+TGG - chr4_3:60006984-60007003 Msa0652300:intron 45.0%
GCTTATCCAAGAACAAGGTC+TGG - chr4_3:60007297-60007316 Msa0652300:five_prime_UTR 45.0%
TCATAGCCAGACCTTGTTCT+TGG + chr4_3:60007306-60007325 None:intergenic 45.0%
!!! ATTATTTTTTTTTAAATGTT+TGG - chr4_3:60003753-60003772 Msa0652300:intron 5.0%
!!! TTTTTTTTTTTTATATTACT+CGG + chr4_3:60007360-60007379 None:intergenic 5.0%
TTGCAATGTGCGAACGTAGC+TGG + chr4_3:60000408-60000427 None:intergenic 50.0%
GAATCAGGGTCTAACTGTGG+TGG - chr4_3:60000472-60000491 Msa0652300:three_prime_UTR 50.0%
CGATGAGGTTGAAGATGGCA+TGG - chr4_3:60000613-60000632 Msa0652300:three_prime_UTR 50.0%
GGAGGAAATGCTTCTCACCA+TGG - chr4_3:60001349-60001368 Msa0652300:intron 50.0%
TGAGAGACAGAGGGGAGATA+TGG - chr4_3:60001667-60001686 Msa0652300:intron 50.0%
CATATGGAGCAGAGGGCAAA+TGG + chr4_3:60001923-60001942 None:intergenic 50.0%
CAGTGTAACAATCGTCGGCA+TGG + chr4_3:60002373-60002392 None:intergenic 50.0%
AGTTGAGGCAAAGGGGGTAA+AGG + chr4_3:60002516-60002535 None:intergenic 50.0%
AAGAGGAGTTGAGGCAAAGG+GGG + chr4_3:60002522-60002541 None:intergenic 50.0%
!! TTGAGGGCATCAGTGTCACA+AGG + chr4_3:60002578-60002597 None:intergenic 50.0%
CACACACAGAGATCAAGAGG+AGG + chr4_3:60002645-60002664 None:intergenic 50.0%
ACGCACACACAGAGATCAAG+AGG + chr4_3:60002648-60002667 None:intergenic 50.0%
TTGATCTCTGTGTGTGCGTG+TGG - chr4_3:60002649-60002668 Msa0652300:intron 50.0%
GGTGCACTCTGTTGTCAAAG+CGG - chr4_3:60002670-60002689 Msa0652300:intron 50.0%
CTACGCGTCAATTTCTTGGG+TGG + chr4_3:60002709-60002728 None:intergenic 50.0%
CCGCTACGCGTCAATTTCTT+GGG + chr4_3:60002712-60002731 None:intergenic 50.0%
CCCAAGAAATTGACGCGTAG+CGG - chr4_3:60002709-60002728 Msa0652300:intron 50.0%
CCAAGAAATTGACGCGTAGC+GGG - chr4_3:60002710-60002729 Msa0652300:intron 50.0%
TTTGGAGAAAGCGGCTGAAG+CGG + chr4_3:60003355-60003374 None:intergenic 50.0%
TTTCTCCAAACGCTCCACCT+TGG - chr4_3:60003365-60003384 Msa0652300:CDS 50.0%
!!! GCGTCGCGTTTTACTGGTTT+TGG - chr4_3:60003394-60003413 Msa0652300:CDS 50.0%
TTGTCAATAGCAGCCGCTAC+CGG + chr4_3:60003436-60003455 None:intergenic 50.0%
GCTGCTATTGACAACAGAGG+TGG - chr4_3:60003442-60003461 Msa0652300:CDS 50.0%
TGAAGTTGAGGGTAAGGGCA+GGG + chr4_3:60003549-60003568 None:intergenic 50.0%
! AGTTGACTCTTACGACGGGA+AGG + chr4_3:60003627-60003646 None:intergenic 50.0%
GGAGTAAAGGTTCCCTGGAA+TGG + chr4_3:60003923-60003942 None:intergenic 50.0%
TCTTGGGAGTAAAGGTTCCC+TGG + chr4_3:60003928-60003947 None:intergenic 50.0%
! GGGGCGTTTCCTTCAAGTTT+AGG + chr4_3:60004013-60004032 None:intergenic 50.0%
AGAACTGAAAAAGGGGGAGC+TGG - chr4_3:60004273-60004292 Msa0652300:intron 50.0%
AAGAGCAAATGCTCCCTGCA+AGG - chr4_3:60004987-60005006 Msa0652300:intron 50.0%
!! TGTGGGCTGGACAAATCTGA+TGG + chr4_3:60005237-60005256 None:intergenic 50.0%
CTCTTCAAGGACAGTGAAGG+TGG + chr4_3:60005427-60005446 None:intergenic 50.0%
CACCTTCACTGTCCTTGAAG+AGG - chr4_3:60005425-60005444 Msa0652300:intron 50.0%
!! GATTAGGGCACTGATTGGTG+AGG - chr4_3:60005603-60005622 Msa0652300:intron 50.0%
CTTGGATGGAAGGAACCAAC+GGG + chr4_3:60005720-60005739 None:intergenic 50.0%
GCTTGGATGGAAGGAACCAA+CGG + chr4_3:60005721-60005740 None:intergenic 50.0%
TCCCTGATGTTCCTCCTTGT+TGG - chr4_3:60005759-60005778 Msa0652300:intron 50.0%
CCCAACAAGGAGGAACATCA+GGG + chr4_3:60005763-60005782 None:intergenic 50.0%
CCCTGATGTTCCTCCTTGTT+GGG - chr4_3:60005760-60005779 Msa0652300:intron 50.0%
CCTGATGTTCCTCCTTGTTG+GGG - chr4_3:60005761-60005780 Msa0652300:intron 50.0%
AATTTCCAGCCCCAACAAGG+AGG + chr4_3:60005773-60005792 None:intergenic 50.0%
GTTGCCATGCGACTAGAATG+TGG - chr4_3:60005836-60005855 Msa0652300:intron 50.0%
! AAGGGCATGGCAACTACCAT+GGG + chr4_3:60005868-60005887 None:intergenic 50.0%
GAGCCCCTTGTACTAGTCAT+CGG - chr4_3:60006029-60006048 Msa0652300:intron 50.0%
AGCCCCTTGTACTAGTCATC+GGG - chr4_3:60006030-60006049 Msa0652300:intron 50.0%
TGCCCGATGACTAGTACAAG+GGG + chr4_3:60006035-60006054 None:intergenic 50.0%
CATGCCCGATGACTAGTACA+AGG + chr4_3:60006037-60006056 None:intergenic 50.0%
CTTGTACTAGTCATCGGGCA+TGG - chr4_3:60006035-60006054 Msa0652300:intron 50.0%
TACTAGTCATCGGGCATGGA+TGG - chr4_3:60006039-60006058 Msa0652300:intron 50.0%
!! GGGCATGGATGGATTTTGAG+TGG - chr4_3:60006050-60006069 Msa0652300:intron 50.0%
TTCACTACACAGTTCCGCCT+TGG - chr4_3:60006078-60006097 Msa0652300:intron 50.0%
! GGGATGGAGACTGTCATTTC+AGG + chr4_3:60006132-60006151 None:intergenic 50.0%
ACAGTCTCCATCCCAATCCA+AGG - chr4_3:60006138-60006157 Msa0652300:CDS 50.0%
CATCCCAATCCAAGGTCCTT+CGG - chr4_3:60006146-60006165 Msa0652300:CDS 50.0%
CAATCCGAAGGACCTTGGAT+TGG + chr4_3:60006153-60006172 None:intergenic 50.0%
ACAAGGTCTGGAAGAAACGG+AGG - chr4_3:60006330-60006349 Msa0652300:intron 50.0%
GATCGAAGTCCAGGTCTAAG+CGG - chr4_3:60006868-60006887 Msa0652300:intron 50.0%
CTTCTTTGACCGCTTAGACC+TGG + chr4_3:60006880-60006899 None:intergenic 50.0%
CAGGTCTAAGCGGTCAAAGA+AGG - chr4_3:60006878-60006897 Msa0652300:intron 50.0%
GGAACCGATAGTGAAGATGG+TGG - chr4_3:60006933-60006952 Msa0652300:intron 50.0%
! ACCGATAGTGAAGATGGTGG+CGG - chr4_3:60006936-60006955 Msa0652300:intron 50.0%
TCCGCCACCATCTTCACTAT+CGG + chr4_3:60006940-60006959 None:intergenic 50.0%
GCTATGCAGAGAGCAAGGCT+CGG - chr4_3:60000572-60000591 Msa0652300:three_prime_UTR 55.0%
TTCAACCTCATCGGGACCAC+CGG + chr4_3:60000606-60000625 None:intergenic 55.0%
GGTCCCGATGAGGTTGAAGA+TGG - chr4_3:60000608-60000627 Msa0652300:three_prime_UTR 55.0%
TTGATGAGGACTGTCGCAGG+TGG - chr4_3:60001479-60001498 Msa0652300:intron 55.0%
!! TGTTGTGTGACGGGTTGAGC+TGG - chr4_3:60002447-60002466 Msa0652300:intron 55.0%
!! GTTGTGTGACGGGTTGAGCT+GGG - chr4_3:60002448-60002467 Msa0652300:intron 55.0%
GTTGAGCTGGGTGATCGATG+TGG - chr4_3:60002460-60002479 Msa0652300:intron 55.0%
CCCGCTACGCGTCAATTTCT+TGG + chr4_3:60002713-60002732 None:intergenic 55.0%
TATAAAGCGGGCGCGATTGC+AGG + chr4_3:60003296-60003315 None:intergenic 55.0%
CGCGATTGCGGGTATAAAGC+GGG + chr4_3:60003308-60003327 None:intergenic 55.0%
GCGCGATTGCGGGTATAAAG+CGG + chr4_3:60003309-60003328 None:intergenic 55.0%
TATAAAGCGGGCGCGATTGC+GGG + chr4_3:60003296-60003315 None:intergenic 55.0%
GTATAAAGCGGGCGCGATTG+CGG + chr4_3:60003297-60003316 None:intergenic 55.0%
CGCGATTGCGGGTATAAAGC+GGG + chr4_3:60003308-60003327 None:intergenic 55.0%
GCGCGATTGCGGGTATAAAG+CGG + chr4_3:60003309-60003328 None:intergenic 55.0%
TTGGAGAAAGCGGCTGAAGC+GGG + chr4_3:60003354-60003373 None:intergenic 55.0%
! GGTGGAGCGTTTGGAGAAAG+CGG + chr4_3:60003364-60003383 None:intergenic 55.0%
GCGGCTGCTATTGACAACAG+AGG - chr4_3:60003439-60003458 Msa0652300:CDS 55.0%
GTGAAGTTGAGGGTAAGGGC+AGG + chr4_3:60003550-60003569 None:intergenic 55.0%
CTTGAAGGAAACGCCCCCTA+TGG - chr4_3:60004016-60004035 Msa0652300:intron 55.0%
AAGGGCTCGCAAACTTTCCC+AGG - chr4_3:60004348-60004367 Msa0652300:intron 55.0%
AGGGCTCGCAAACTTTCCCA+GGG - chr4_3:60004349-60004368 Msa0652300:intron 55.0%
TGCTTATAGCTCGGGGCCAT+AGG + chr4_3:60005019-60005038 None:intergenic 55.0%
! GACGTGGAAGGATGACTTGG+AGG + chr4_3:60005405-60005424 None:intergenic 55.0%
GTGGACGTGGAAGGATGACT+TGG + chr4_3:60005408-60005427 None:intergenic 55.0%
ACAGTGAAGGTGGACGTGGA+AGG + chr4_3:60005417-60005436 None:intergenic 55.0%
AAGGACAGTGAAGGTGGACG+TGG + chr4_3:60005421-60005440 None:intergenic 55.0%
GGCCTCTTCAAGGACAGTGA+AGG + chr4_3:60005430-60005449 None:intergenic 55.0%
CCCCAACAAGGAGGAACATC+AGG + chr4_3:60005764-60005783 None:intergenic 55.0%
ATGTTCCTCCTTGTTGGGGC+TGG - chr4_3:60005765-60005784 Msa0652300:intron 55.0%
! CAAGGGCATGGCAACTACCA+TGG + chr4_3:60005869-60005888 None:intergenic 55.0%
TTGCCATGCCCTTGCCAAGT+TGG - chr4_3:60005875-60005894 Msa0652300:intron 55.0%
TCACCAACTTGGCAAGGGCA+TGG + chr4_3:60005881-60005900 None:intergenic 55.0%
GCTCTTTCTCGGAGGATCGA+AGG + chr4_3:60006013-60006032 None:intergenic 55.0%
TACAAGGGGCTCTTTCTCGG+AGG + chr4_3:60006021-60006040 None:intergenic 55.0%
! CGAAGGACCTTGGATTGGGA+TGG + chr4_3:60006148-60006167 None:intergenic 55.0%
AGGGTCAATCCGAAGGACCT+TGG + chr4_3:60006158-60006177 None:intergenic 55.0%
ATGCAGAGAGCAAGGCTCGG+TGG - chr4_3:60000575-60000594 Msa0652300:three_prime_UTR 60.0%
TGAGGACTGTCGCAGGTGGA+TGG - chr4_3:60001483-60001502 Msa0652300:intron 60.0%
AAACGGGCAGCATGCCACTC+TGG + chr4_3:60001522-60001541 None:intergenic 60.0%
AGAGTGGCATGCTGCCCGTT+TGG - chr4_3:60001521-60001540 Msa0652300:intron 60.0%
GTCAAAGCGGAAATGCGGCG+CGG - chr4_3:60002683-60002702 Msa0652300:intron 60.0%
!! ACGCGTAGCGGGCGCTATTT+CGG - chr4_3:60002721-60002740 Msa0652300:intron 60.0%
GGCGCGATTGCAGGTCAAAG+CGG + chr4_3:60003287-60003306 None:intergenic 60.0%
! AGCGCTGCGTCGCGTTTTAC+TGG - chr4_3:60003388-60003407 Msa0652300:CDS 60.0%
GGTGGGGTTGTGCATTCCCA+TGG + chr4_3:60003857-60003876 None:intergenic 60.0%
! GAGGGAGAATGACTGGCCCA+AGG + chr4_3:60005546-60005565 None:intergenic 60.0%
!! GCAAGGCTCGGTGGTGCTTC+CGG - chr4_3:60000584-60000603 Msa0652300:three_prime_UTR 65.0%
TGCTTCCGGTGGTCCCGATG+AGG - chr4_3:60000598-60000617 Msa0652300:three_prime_UTR 65.0%
!! CGTAGCGGGCGCTATTTCGG+TGG - chr4_3:60002724-60002743 Msa0652300:intron 65.0%
! GCGCTCCAAGGTGGAGCGTT+TGG + chr4_3:60003373-60003392 None:intergenic 65.0%
AAACGCGACGCAGCGCTCCA+AGG + chr4_3:60003385-60003404 None:intergenic 65.0%
!! AGGCTCGGTGGTGCTTCCGG+TGG - chr4_3:60000587-60000606 Msa0652300:three_prime_UTR 70.0%
! CGGGCGCTATTTCGGTGGCG+CGG - chr4_3:60002729-60002748 Msa0652300:intron 70.0%
GCTGAAGCGGGCGCGATTGC+GGG + chr4_3:60003342-60003361 None:intergenic 70.0%
GGCTGAAGCGGGCGCGATTG+CGG + chr4_3:60003343-60003362 None:intergenic 70.0%
AGCCGCTACCGGCGCTATCG+CGG + chr4_3:60003425-60003444 None:intergenic 70.0%
CGCGACGCAGCGCTCCAAGG+TGG + chr4_3:60003382-60003401 None:intergenic 75.0%
CTACCGGCGCTATCGCGGCG+CGG + chr4_3:60003420-60003439 None:intergenic 75.0%
!! CGCCGCGATAGCGCCGGTAG+CGG - chr4_3:60003420-60003439 Msa0652300:CDS 75.0%
! TGGCCGCGCCGCGATAGCGC+CGG - chr4_3:60003414-60003433 Msa0652300:CDS 80.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 60000333 60007398 60000333 ID=Msa0652300;Name=Msa0652300
chr4_3 mRNA 60000333 60007398 60000333 ID=Msa0652300-mRNA-1;Parent=Msa0652300;Name=Msa0652300-mRNA-1;_AED=0.16;_eAED=0.16;_QI=215|1|1|1|1|1|5|388|201
chr4_3 exon 60000333 60000948 60000333 ID=Msa0652300-mRNA-1:exon:16256;Parent=Msa0652300-mRNA-1
chr4_3 exon 60003170 60003216 60003170 ID=Msa0652300-mRNA-1:exon:16255;Parent=Msa0652300-mRNA-1
chr4_3 exon 60003322 60003463 60003322 ID=Msa0652300-mRNA-1:exon:16254;Parent=Msa0652300-mRNA-1
chr4_3 exon 60006132 60006233 60006132 ID=Msa0652300-mRNA-1:exon:16253;Parent=Msa0652300-mRNA-1
chr4_3 exon 60007097 60007398 60007097 ID=Msa0652300-mRNA-1:exon:16252;Parent=Msa0652300-mRNA-1
chr4_3 five_prime_UTR 60007184 60007398 60007184 ID=Msa0652300-mRNA-1:five_prime_utr;Parent=Msa0652300-mRNA-1
chr4_3 CDS 60007097 60007183 60007097 ID=Msa0652300-mRNA-1:cds;Parent=Msa0652300-mRNA-1
chr4_3 CDS 60006132 60006233 60006132 ID=Msa0652300-mRNA-1:cds;Parent=Msa0652300-mRNA-1
chr4_3 CDS 60003322 60003463 60003322 ID=Msa0652300-mRNA-1:cds;Parent=Msa0652300-mRNA-1
chr4_3 CDS 60003170 60003216 60003170 ID=Msa0652300-mRNA-1:cds;Parent=Msa0652300-mRNA-1
chr4_3 CDS 60000721 60000948 60000721 ID=Msa0652300-mRNA-1:cds;Parent=Msa0652300-mRNA-1
chr4_3 three_prime_UTR 60000333 60000720 60000333 ID=Msa0652300-mRNA-1:three_prime_utr;Parent=Msa0652300-mRNA-1
Gene Sequence

>Msa0652300

ATGGGGAAAAATCAAGCATACAAAGCTATGCAGAGAGCAAGGCTCGGTGGTGCTTCCGGTGGTCCCGATGAGGTTGAAGATGGCATGGTGGATGGTTCATTTCATTCACCAGAGTGGCATGCTGCCCGTTTGGCTAGCCTTAAAACATCTCACACAATTACCTGGGAAGAGTACAAAAAGAAACAAAAGGAAGAAGAACTGAAAAAGGGGGAGCTGGAAGCAGATGCAGATAAGATGATGAGGGAGTACAGGGCTCAACTAGATGCTGAAAGGGCTCGCAAACTTTCCCAGGGTAGAAATCACTCTAGTAGTAAGTCTAAACATTCAAAAGACAAGAGGGACAAAATTTCAAAGAAGCATAGCAGCAGAAAAAGAAAGCATTCAAGAAGATCTTCTCCATCTAGCTCCTCTTCATCATCCTCATACTCTTCCAGTAGTGAAGACGAAGAGAGATCATCAAAAAGATCGAAGTCCAGGTCTAAGCGGTCAAAGAAGGAAAAGAAGCACAAGTCAAAAAGCAAGGATTCTGGAACCGATAGTGAAGATGGTGGCGGACCAGTTCGCCTATCGAAATTTTTTGGGACATCAAGAGTTGATAGTGGTTGA
Protein sequence

>Msa0652300

MGKNQAYKAMQRARLGGASGGPDEVEDGMVDGSFHSPEWHAARLASLKTSHTITWEEYKKKQKEEELKKGELEADADKMMREYRAQLDAERARKLSQGRNHSSSKSKHSKDKRDKISKKHSSRKRKHSRRSSPSSSSSSSSYSSSSEDEERSSKRSKSRSKRSKKEKKHKSKSKDSGTDSEDGGGPVRLSKFFGTSRVDSG*