AlfalfaGEDB | Msa0048150

M. sativa cultivar zhongmu-4 / Msa0048150

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0048150	A0A072TGB8	84.553	123	14	2	1	121	1	120	3.96e-57	182

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0048150	Msa0056470	0.816774	4.649329e-52	-8.615850e-47
Msa0048150	Msa0068020	0.821186	4.615627e-53	-8.615850e-47
Msa0048150	Msa0140650	0.827654	1.388683e-54	-8.615850e-47
Msa0048150	Msa0190590	0.823464	1.365523e-53	-8.615850e-47
Msa0048150	Msa0232790	0.802381	5.763500e-49	-8.615850e-47
Msa0048150	Msa0272300	0.815585	8.572443e-52	-8.615850e-47
Msa0048150	Msa0277560	-0.800692	1.279103e-48	-8.615850e-47
Msa0048150	Msa0315440	-0.814631	1.396618e-51	-8.615850e-47
Msa0048150	Msa0378490	0.854289	1.358890e-61	-8.615850e-47
Msa0048150	Msa0414800	0.805415	1.349677e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0048150	MtrunA17_Chr1g0173081	84.553	123	14	2	1	121	1	120	7.62e-61	182
Msa0048150	MtrunA17_Chr4g0004671	84.553	123	14	2	1	121	1	120	1.47e-59	179

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0048150	AT1G15230.1	43.038	158	51	4	1	122	1	155	1.58e-23	89.4

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Find 40 sgRNAs with CRISPR-Local

Find 42 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCCATCAACACAAGCTCC+CGG	0.588157	1_2:+367913	None:intergenic
AACGCTTCGTGGATTGATTC+CGG	0.389122	1_2:+368069	None:intergenic
AAGAAACCTATCTTGGTTGG+TGG	0.604979	1_2:-367823	Msa0048150:CDS
ACATAGCCACCAACCAAGAT+AGG	0.434082	1_2:+367817	None:intergenic
AGACCTGCGTCTTCTAGACG+CGG	0.716883	1_2:+368111	None:intergenic
AGAGCCGGAAAACGAGGAGC+CGG	0.519247	1_2:-367932	Msa0048150:CDS
AGCCGGGAGCTTGTGTTGAT+GGG	0.502950	1_2:-367915	Msa0048150:CDS
ATAATCTGCTGCAGCAAACC+TGG	0.498161	1_2:+368138	None:intergenic
ATCGACGATCCAAAGCCGGC+CGG	0.592029	1_2:-367985	Msa0048150:CDS
ATTGATTCCGGTGGAAGTGC+AGG	0.512710	1_2:+368081	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGTGAATATTCTCGATTTCA+CGG	+	chr1_2:367946-367965	None:intergenic	30.0%
TTTGGAGAAAGATGATGTAA+AGG	-	chr1_2:368088-368107	Msa0048150:CDS	30.0%
GAAAGATGATGTAAAGGAAA+AGG	-	chr1_2:368094-368113	Msa0048150:CDS	30.0%
GAAAGAGAAGAAACCTATCT+TGG	-	chr1_2:368142-368161	Msa0048150:CDS	35.0%
GAATATTCTCGATTTCACGG+CGG	+	chr1_2:367943-367962	None:intergenic	40.0%
TCGAGAATATTCACATCCTC+CGG	-	chr1_2:367951-367970	Msa0048150:CDS	40.0%
GAGAAGAAACCTATCTTGGT+TGG	-	chr1_2:368146-368165	Msa0048150:CDS	40.0%
AAGAAACCTATCTTGGTTGG+TGG	-	chr1_2:368149-368168	Msa0048150:CDS	40.0%
ATAATCTGCTGCAGCAAACC+TGG	+	chr1_2:367837-367856	None:intergenic	45.0%
TGTTATAGAGCCGGAAAACG+AGG	-	chr1_2:368034-368053	Msa0048150:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	367813	368181	367813	ID=Msa0048150;Name=Msa0048150
chr1_2	mRNA	367813	368181	367813	ID=Msa0048150-mRNA-1;Parent=Msa0048150;Name=Msa0048150-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|122
chr1_2	exon	367813	368181	367813	ID=Msa0048150-mRNA-1:exon:18;Parent=Msa0048150-mRNA-1
chr1_2	CDS	367813	368181	367813	ID=Msa0048150-mRNA-1:cds;Parent=Msa0048150-mRNA-1

Gene Sequence	>Msa0048150 ATGGAGTCCACCGAGAAACAACCAGGTTTGCTGCAGCAGATTATACCACCGCGTCTAGAAGACGCAGGTCTCGAAGATCCTGCACTTCCACCGGAATCAATCCACGAAGCGTTTCTCAAAGCAGCCGCCGCCGTGAAATCGAGAATATTCACATCCTCCGGCGAAGATGATTGCATCGACGATCCAAAGCCGGCCGGCGAGGATGCTTCAGATGTCGTTGGTGTTATAGAGCCGGAAAACGAGGAGCCGGGAGCTTGTGTTGATGGGTTGCAAGGTTTGGAGAAAGATGATGTAAAGGAAAAGGAAAAAAGTGAAGAAAAGGAGAAGAAGAAAGAGAAGAAACCTATCTTGGTTGGTGGCTATGTTTGA
Protein sequence	>Msa0048150 MESTEKQPGLLQQIIPPRLEDAGLEDPALPPESIHEAFLKAAAAVKSRIFTSSGEDDCIDDPKPAGEDASDVVGVIEPENEEPGACVDGLQGLEKDDVKEKEKSEEKEKKKEKKPILVGGYV*