AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0539410

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0539410 MtrunA17_Chr4g0014351 81.132 371 17 4 1 348 529 869 0.0 551
Msa0539410 MtrunA17_Chr5g0396231 47.297 148 48 2 200 347 382 499 1.28e-35 135
Msa0539410 MtrunA17_Chr1g0179681 29.333 150 69 5 204 347 125 243 2.67e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0539410 AT4G25340.1 45.638 149 52 1 200 348 358 477 1.11e-36 138
Msa0539410 AT3G12340.3 34.520 281 130 7 80 348 140 378 2.15e-35 133
Msa0539410 AT3G12340.2 34.520 281 130 7 80 348 140 378 2.15e-35 133
Msa0539410 AT3G12340.1 34.532 278 134 6 80 348 261 499 9.03e-35 133
Msa0539410 AT5G05420.1 39.416 137 53 2 211 347 36 142 3.25e-25 99.8
Msa0539410 AT4G25340.2 41.905 105 32 1 200 304 358 433 9.09e-18 84.3

Find 200 sgRNAs with CRISPR-Local

Find 621 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAGTCCTTGCAATTGAATT+TGG 0.202666 4_1:+20309315 Msa0539410:five_prime_UTR
TAATAAAATGTTCTGGTAAA+TGG 0.219215 4_1:-20316939 None:intergenic
AAACTCTACTCTCCGGGTTT+AGG 0.224182 4_1:+20307853 None:intergenic
CCATTTCTGTTGTCACCTTC+AGG 0.226295 4_1:-20314198 None:intergenic
TCATAAACCAACCATGAATT+TGG 0.244200 4_1:-20317344 None:intergenic
GTTATTGAGGGTTGGGATAT+TGG 0.252092 4_1:+20317026 Msa0539410:CDS
ACTGGCAAGTTGAAGGAAAA+TGG 0.261284 4_1:+20316855 Msa0539410:CDS
AACTCTACTCTCCGGGTTTA+GGG 0.271814 4_1:+20307854 None:intergenic
CTTCCACTGTTCCGGATGTT+GGG 0.283057 4_1:+20310909 Msa0539410:five_prime_UTR
CTTCCACTGTTCCGGATGTT+GGG 0.283057 4_1:+20311778 Msa0539410:five_prime_UTR
CTTGAGACAGGGAAAGAAAA+TGG 0.283603 4_1:+20316677 Msa0539410:CDS
TGGTCATGTTTGAGTGAATA+TGG 0.290346 4_1:+20317416 Msa0539410:three_prime_UTR
GGCAGTTCCTTCCACTGTTC+CGG 0.304338 4_1:+20311770 Msa0539410:five_prime_UTR
GACAGTTCCTTCCACTGTTC+CGG 0.305801 4_1:+20310901 Msa0539410:five_prime_UTR
AATGTTATTCTTTCCGTCCT+TGG 0.324140 4_1:+20309355 Msa0539410:five_prime_UTR
ATATTTGAGCTTGCCTTCAT+TGG 0.326158 4_1:-20310286 None:intergenic
GGTCGATCCTTGCACTGTTC+CGG 0.327548 4_1:+20311314 Msa0539410:five_prime_UTR
AGTAATCAGGACACAGTTAA+TGG 0.330450 4_1:+20313473 Msa0539410:CDS
TAAATCCTTTGTAAGGGTAT+TGG 0.334919 4_1:+20310588 Msa0539410:five_prime_UTR
TTTCTTAACTTTCTTATCTT+CGG 0.342081 4_1:-20316492 None:intergenic
AGCTTGCCTTCATTGGAAAT+AGG 0.344631 4_1:-20310279 None:intergenic
GAACACAGACGAGGATCTTC+TGG 0.344791 4_1:+20311910 Msa0539410:CDS
TAGTGCTACTGAAACAAAAT+TGG 0.347050 4_1:+20311117 Msa0539410:five_prime_UTR
AGATTTCTCTGTTTCTGTAT+TGG 0.347847 4_1:-20310181 None:intergenic
CCTTCCACTGTTCCGGATGT+TGG 0.349134 4_1:+20310908 Msa0539410:five_prime_UTR
CCTTCCACTGTTCCGGATGT+TGG 0.349134 4_1:+20311777 Msa0539410:five_prime_UTR
TTTGAATTTCAGGCCACTTT+GGG 0.356978 4_1:+20309202 Msa0539410:intron
ATGAACACTCACTTATCATT+AGG 0.360171 4_1:-20311959 None:intergenic
CATTTGACAATGTTCGAACT+TGG 0.360911 4_1:-20316637 None:intergenic
AATTGCTGCAGTAGGGAAAA+AGG 0.366272 4_1:+20316703 Msa0539410:CDS
AGGAGAAGTTATTGAGGGTT+GGG 0.373313 4_1:+20317019 Msa0539410:CDS
CTTTGAATTTCAGGCCACTT+TGG 0.383074 4_1:+20309201 Msa0539410:intron
AGAAGAATAAATCCTTTGTA+AGG 0.383149 4_1:+20310581 Msa0539410:five_prime_UTR
GAAGAAGAAAAGTAAAAGTC+AGG 0.385488 4_1:+20316517 Msa0539410:CDS
TAAAGAGAGCACAGATAAAC+AGG 0.395132 4_1:-20309280 None:intergenic
TGAAATGTGAAGGCGACCTT+TGG 0.404167 4_1:-20308071 None:intergenic
TAAATCACATACGTCATTGA+TGG 0.404187 4_1:-20317196 None:intergenic
ATCCAGATAATAAAATGTTC+TGG 0.410043 4_1:-20316946 None:intergenic
AAAACATACCACCAAATTCA+TGG 0.412855 4_1:+20317333 Msa0539410:CDS
GGATATGACTATTGTATACT+TGG 0.413942 4_1:+20316965 Msa0539410:CDS
TTCTTTCCGTCCTTGGCCCT+CGG 0.414122 4_1:+20309362 Msa0539410:five_prime_UTR
TATCTTTCCCGTGGCCGCTA+TGG 0.415207 4_1:+20309406 Msa0539410:five_prime_UTR
CTTTGTAAGGGTATTGGATC+AGG 0.415878 4_1:+20310594 Msa0539410:five_prime_UTR
GGACTCTGCTGTCTCTTTGT+CGG 0.416295 4_1:-20314247 None:intergenic
CCTTGCACTGTTCCGGATGT+TGG 0.419726 4_1:+20311321 Msa0539410:five_prime_UTR
TTTCCTGATCCAAGAGATCC+TGG 0.427168 4_1:-20311464 None:intergenic
CTGGCAAGTTGAAGGAAAAT+GGG 0.428303 4_1:+20316856 Msa0539410:CDS
GTTATTCAAGAGCTTGAGAC+AGG 0.428795 4_1:+20316665 Msa0539410:CDS
TATCTGTGCTCTCTTTATCC+AGG 0.431922 4_1:+20309286 Msa0539410:five_prime_UTR
TTCTTGCAAAGAGAAGAAAT+TGG 0.432751 4_1:-20310562 None:intergenic
AAGGAGAAGTTATTGAGGGT+TGG 0.439237 4_1:+20317018 Msa0539410:CDS
TGTGTTCATTTCCCTGAGGC+AGG 0.441265 4_1:-20313451 None:intergenic
TATGGGAAATATATGGAGTC+AGG 0.441536 4_1:+20317434 Msa0539410:three_prime_UTR
CAATGTTGTTAACCTGCCTC+AGG 0.441931 4_1:+20313439 Msa0539410:CDS
ACTTCTCCTTTACCTGCAAA+AGG 0.442952 4_1:-20317005 None:intergenic
TTTCCTGATCAAAGTGATCC+TGG 0.444859 4_1:-20311030 None:intergenic
GAACATGGCCCAGGATCTCT+TGG 0.449898 4_1:+20311455 Msa0539410:five_prime_UTR
TGTTATCATACAATTGAATC+CGG 0.451568 4_1:-20317470 None:intergenic
TGGCCGCTATGGCAATACTA+TGG 0.452319 4_1:+20309417 Msa0539410:five_prime_UTR
GGGAAATGAACACAGTAATC+AGG 0.452685 4_1:+20313460 Msa0539410:CDS
GGTTGGGATATTGGTCTTGA+AGG 0.456064 4_1:+20317035 Msa0539410:CDS
GACAAAGAATCAATTGATGC+TGG 0.460559 4_1:+20310634 Msa0539410:five_prime_UTR
ACTTATCATTAGGTTGCTGC+TGG 0.460977 4_1:-20311949 None:intergenic
GGATCTCTTGGATCAGGAAA+TGG 0.461360 4_1:+20311467 Msa0539410:five_prime_UTR
AAGGGTATTGGATCAGGAAA+TGG 0.462620 4_1:+20310600 Msa0539410:five_prime_UTR
TTGTGCAGCATTATCTAGTT+CGG 0.464224 4_1:-20311418 None:intergenic
GAGTGAATATGGGAAATATA+TGG 0.464720 4_1:+20317427 Msa0539410:three_prime_UTR
TCTTCGGATTGATTTCCATC+AGG 0.465182 4_1:-20316476 None:intergenic
TCACTGAGAGTCAGATTCAT+AGG 0.468116 4_1:+20310722 Msa0539410:five_prime_UTR
CAGTGTGCATGTACAATCTC+AGG 0.468383 4_1:+20310516 Msa0539410:five_prime_UTR
GGCCCAGGATCTCTTGGATC+AGG 0.470381 4_1:+20311461 Msa0539410:five_prime_UTR
CCTGAAGGTGACAACAGAAA+TGG 0.473113 4_1:+20314198 Msa0539410:CDS
CAACTCTTCCTCTGAAACAA+TGG 0.475717 4_1:+20307905 Msa0539410:five_prime_UTR
ATCTGAAAGAAACAAAACTT+TGG 0.476877 4_1:-20317577 None:intergenic
GTAATCAGGACACAGTTAAT+GGG 0.477374 4_1:+20313474 Msa0539410:CDS
GATGATGATAGCGGTCTTGA+AGG 0.478274 4_1:+20310475 Msa0539410:five_prime_UTR
TGCAAGGACTCAGTTTGTCC+TGG 0.479083 4_1:-20309304 None:intergenic
TTTCAGTAGCACTACTCTCA+TGG 0.479334 4_1:-20311108 None:intergenic
ATGTTCATTACTAGAGCTCT+TGG 0.479995 4_1:-20311846 None:intergenic
TTTCAATAATACTGTTCTCA+TGG 0.480905 4_1:-20310675 None:intergenic
CAAGTTCGAACATTGTCAAA+TGG 0.482884 4_1:+20316638 Msa0539410:CDS
ATCAAATTCAACATTATATG+TGG 0.484953 4_1:-20317746 None:intergenic
GTACTTTGCTCAACCGATAC+AGG 0.491823 4_1:-20316566 None:intergenic
CAGTGGAAGGAACTGCCAAC+TGG 0.491931 4_1:-20311764 None:intergenic
GTCAGGAGGCAATCAAAATC+CGG 0.492910 4_1:+20317451 Msa0539410:three_prime_UTR
GTTGGTTTATGACTTTGAAC+TGG 0.494478 4_1:+20317355 Msa0539410:CDS
CAATTACACTGGCAAGTTGA+AGG 0.496463 4_1:+20316848 Msa0539410:CDS
AGCTGAACCTTCTGATCACT+TGG 0.500805 4_1:+20311293 Msa0539410:five_prime_UTR
AGGTCGCCTTCACATTTCAA+TGG 0.502314 4_1:+20308075 Msa0539410:five_prime_UTR
TTCACAGGTTGGTCAAGGAC+AGG 0.509597 4_1:+20313343 Msa0539410:CDS
CATACCACCAAATTCATGGT+TGG 0.511268 4_1:+20317337 Msa0539410:CDS
GACAATGTTCGAACTTGGGA+AGG 0.511892 4_1:-20316632 None:intergenic
TAAAATACTACCTTCTTCAC+AGG 0.511997 4_1:+20313328 Msa0539410:CDS
TTCCACTGTTCCGGATGTTG+GGG 0.516382 4_1:+20310910 Msa0539410:five_prime_UTR
TTCCACTGTTCCGGATGTTG+GGG 0.516382 4_1:+20311779 Msa0539410:five_prime_UTR
AGGTAAAGGAGAAGTTATTG+AGG 0.516723 4_1:+20317013 Msa0539410:CDS
GAATCATAAGTGTGAGTGAA+AGG 0.517316 4_1:-20308046 None:intergenic
GGTAAAGGAGAAGTTATTGA+GGG 0.518782 4_1:+20317014 Msa0539410:CDS
GCCAAACAAACTCTACTCTC+CGG 0.519414 4_1:+20307846 None:intergenic
TTTCAGGCCACTTTGGGACA+TGG 0.520724 4_1:+20309208 Msa0539410:intron
GCTCCTTTCAAATTTCGCCT+TGG 0.521588 4_1:+20316906 Msa0539410:CDS
GTCCCAGGATCACTTTGATC+AGG 0.522854 4_1:+20311027 Msa0539410:five_prime_UTR
GCAATTGAATTTGGAGCTTG+AGG 0.523659 4_1:+20309324 Msa0539410:five_prime_UTR
TTGAGACAGGGAAAGAAAAT+GGG 0.525124 4_1:+20316678 Msa0539410:CDS
AATGGGAAAATTGCTGCAGT+AGG 0.525430 4_1:+20316695 Msa0539410:CDS
TAGTATTGCCATAGCGGCCA+CGG 0.525730 4_1:-20309414 None:intergenic
TGATTCTCAGGCATGCGAGT+TGG 0.529832 4_1:+20317148 Msa0539410:intron
CCTTGACCAACCTGTGAAGA+AGG 0.529915 4_1:-20313338 None:intergenic
TCCATCCAACTGATTGTGGC+TGG 0.529976 4_1:+20317396 Msa0539410:three_prime_UTR
CTTTCACCAACGACTCGACA+TGG 0.530014 4_1:-20317619 None:intergenic
ACTGAGATGATGGAAGAGGA+TGG 0.530349 4_1:+20316587 Msa0539410:CDS
AATTTGGAGCTTGAGGAAGA+TGG 0.534366 4_1:+20309331 Msa0539410:five_prime_UTR
TGAGCAAAGTACTGAGATGA+TGG 0.540063 4_1:+20316577 Msa0539410:CDS
CACACTTATGATTCTTCCAA+AGG 0.540990 4_1:+20308055 Msa0539410:five_prime_UTR
GAAGTACCACTTGGTAGAGT+CGG 0.543598 4_1:+20310453 Msa0539410:five_prime_UTR
CCAAACAAACTCTACTCTCC+GGG 0.544183 4_1:+20307847 None:intergenic
TCGCAGATATTCAAACTCAT+AGG 0.545219 4_1:+20311589 Msa0539410:five_prime_UTR
ATTTGACAATGTTCGAACTT+GGG 0.546455 4_1:-20316636 None:intergenic
AGCTGAACCTTCAGACCAGT+TGG 0.547478 4_1:+20311749 Msa0539410:five_prime_UTR
GACAGAGAAACAGTTGATGC+TGG 0.549982 4_1:+20311067 Msa0539410:five_prime_UTR
GCATCTCCTATTTCCAATGA+AGG 0.550943 4_1:+20310273 Msa0539410:five_prime_UTR
ACAATGGAAAGGGAATCATA+TGG 0.551522 4_1:+20310147 Msa0539410:intron
TGAGAATCTGTCTCAGAGGA+AGG 0.554915 4_1:-20314126 None:intergenic
TTACTCCATCCAACTGATTG+TGG 0.558119 4_1:+20317392 Msa0539410:three_prime_UTR
AAGTACTGAGATGATGGAAG+AGG 0.558158 4_1:+20316583 Msa0539410:CDS
TTACCAAGGCGAAATTTGAA+AGG 0.559040 4_1:-20316909 None:intergenic
GATGAATACTCCGAGGGCCA+AGG 0.559789 4_1:-20309372 None:intergenic
GCAGGTGTTGAAATCAAACC+TGG 0.561306 4_1:+20308019 Msa0539410:intron
ATACTACCTTCTTCACAGGT+TGG 0.562544 4_1:+20313332 Msa0539410:CDS
AGGCAGGAAAGCTGAAACCA+CGG 0.563166 4_1:+20313304 Msa0539410:intron
CTGATCCAATACCCTTACAA+AGG 0.563428 4_1:-20310593 None:intergenic
ACCAGCCACAATCAGTTGGA+TGG 0.563509 4_1:-20317397 None:intergenic
GGAACTGCCAACTGGTCTGA+AGG 0.564194 4_1:-20311756 None:intergenic
CCTTCTTCACAGGTTGGTCA+AGG 0.564207 4_1:+20313338 Msa0539410:CDS
GTGCGAAAGGCAGCAGAAGA+CGG 0.564863 4_1:+20310422 Msa0539410:five_prime_UTR
TTGCAGATAGTCAGACTCAC+AGG 0.565785 4_1:+20311155 Msa0539410:five_prime_UTR
TTCCTGATCAAAGTGATCCT+GGG 0.566097 4_1:-20311029 None:intergenic
TGCATGTTTCAGGTCTAAGA+AGG 0.568255 4_1:+20317298 Msa0539410:intron
TGCAGCATTATCTAGTTCAG+TGG 0.568551 4_1:-20310981 None:intergenic
AAGGCAGCAGAAGACGGCTG+AGG 0.570683 4_1:+20310428 Msa0539410:five_prime_UTR
AAGCACTCTGCAATGTAATG+TGG 0.570727 4_1:+20309246 Msa0539410:five_prime_UTR
AAGCTCCAAATTCAATTGCA+AGG 0.573154 4_1:-20309320 None:intergenic
AGCACTCTGCAATGTAATGT+GGG 0.576664 4_1:+20309247 Msa0539410:five_prime_UTR
ATGGGAAAATTGCTGCAGTA+GGG 0.578049 4_1:+20316696 Msa0539410:CDS
AAGAAGAAAAGTAAAAGTCA+GGG 0.578925 4_1:+20316518 Msa0539410:CDS
CAACATTATATGTGGAGACA+TGG 0.580224 4_1:-20317738 None:intergenic
CGCAGCATTATCTAGATCGG+TGG 0.581023 4_1:-20311870 None:intergenic
GGTCATGTTTGAGTGAATAT+GGG 0.581265 4_1:+20317417 Msa0539410:three_prime_UTR
GGAACTGTCAACTGATCTGA+AGG 0.581399 4_1:-20310887 None:intergenic
CGAAAACCATGTCGAGTCGT+TGG 0.581601 4_1:+20317613 Msa0539410:three_prime_UTR
CATGACCAGCCACAATCAGT+TGG 0.583859 4_1:-20317401 None:intergenic
GGATCGACCAAGTGATCAGA+AGG 0.590673 4_1:-20311300 None:intergenic
GGAAGAGGATGGAAATAATG+TGG 0.590711 4_1:+20316598 Msa0539410:CDS
GACAAAGAAGCAGTTGATGA+TGG 0.591027 4_1:+20311501 Msa0539410:five_prime_UTR
CCAACATCCGGAACAGTGCA+AGG 0.592707 4_1:-20311321 None:intergenic
GAAGAATAAATCCTTTGTAA+GGG 0.593834 4_1:+20310582 Msa0539410:five_prime_UTR
TAAACCAACCATGAATTTGG+TGG 0.597643 4_1:-20317341 None:intergenic
CCAACATCCGGAACAGTGGA+AGG 0.599169 4_1:-20310908 None:intergenic
CCAACATCCGGAACAGTGGA+AGG 0.599169 4_1:-20311777 None:intergenic
AGCATTATCTAGTTCAGTGG+AGG 0.600926 4_1:-20310978 None:intergenic
AGATTACCATTGAAATGTGA+AGG 0.601891 4_1:-20308081 None:intergenic
TGCGGTTATTATCTTTCCCG+TGG 0.601909 4_1:+20309397 Msa0539410:five_prime_UTR
TTGCGCAGCATTATCTAGAT+CGG 0.602410 4_1:-20311873 None:intergenic
AATGTTGTTAACCTGCCTCA+GGG 0.602636 4_1:+20313440 Msa0539410:CDS
GCAGAGGAAGCATCTTCTGA+TGG 0.602658 4_1:+20310388 Msa0539410:intron
TGCAGTGCCATGTCCCAAAG+TGG 0.602865 4_1:-20309215 None:intergenic
GGTGCTCAAGACAATCCTGA+TGG 0.604417 4_1:+20316461 Msa0539410:CDS
AAACACTGATGTGCCTGTAT+CGG 0.606799 4_1:+20316553 Msa0539410:CDS
GTGGTGATTGAATCAAATGC+TGG 0.607008 4_1:+20316879 Msa0539410:CDS
AACAAAGCTTCACATCCTGA+AGG 0.609738 4_1:+20314183 Msa0539410:CDS
ATCACATACGTCATTGATGG+TGG 0.611631 4_1:-20317193 None:intergenic
AGTATTGCCATAGCGGCCAC+GGG 0.614575 4_1:-20309413 None:intergenic
ATCCCCAACATCCGGAACAG+TGG 0.617458 4_1:-20311781 None:intergenic
CAGATCAGCATCAATTACAC+TGG 0.623336 4_1:+20316837 Msa0539410:intron
ACAGACGAGGATCTTCTGGC+AGG 0.625586 4_1:+20311914 Msa0539410:CDS
TTCCTGATCCAAGAGATCCT+GGG 0.625814 4_1:-20311463 None:intergenic
CGCAGAGATGAATACTCCGA+GGG 0.629223 4_1:-20309378 None:intergenic
CATCCATAGTATTGCCATAG+CGG 0.629804 4_1:-20309420 None:intergenic
ATTCTCAAAAGAAAACAAAG+AGG 0.632744 4_1:+20314142 Msa0539410:CDS
GGTGACAACAGAAATGGAGA+AGG 0.633425 4_1:+20314204 Msa0539410:CDS
AATACTCCGAGGGCCAAGGA+CGG 0.634343 4_1:-20309368 None:intergenic
ATCCCCAACATCCGGAACAG+TGG 0.646276 4_1:-20310912 None:intergenic
GGGAAATATATGGAGTCAGG+AGG 0.650332 4_1:+20317437 Msa0539410:three_prime_UTR
TGGTGCAGCAGTGTGGACAA+TGG 0.653645 4_1:+20316440 Msa0539410:intron
GAGGAAGCATCTTCTGATGG+CGG 0.656231 4_1:+20310391 Msa0539410:intron
AGAGGATGGAAATAATGTGG+AGG 0.656655 4_1:+20316601 Msa0539410:CDS
CGAGTCGTTGGTGAAAGTCA+TGG 0.657325 4_1:+20317625 Msa0539410:three_prime_UTR
TGTTTCAGGTCTAAGAAGGA+CGG 0.657592 4_1:+20317302 Msa0539410:intron
TTATTCAAGAGCTTGAGACA+GGG 0.658642 4_1:+20316666 Msa0539410:CDS
TGGCAAGTTGAAGGAAAATG+GGG 0.678248 4_1:+20316857 Msa0539410:CDS
GTAGAGTCGGATGATGATAG+CGG 0.678545 4_1:+20310466 Msa0539410:five_prime_UTR
GCTGAGGAAGAAGTACCACT+TGG 0.681517 4_1:+20310444 Msa0539410:five_prime_UTR
TTACTGTGTTCATTTCCCTG+AGG 0.689976 4_1:-20313455 None:intergenic
TTATTTCTGGTGCAGCAGTG+TGG 0.690159 4_1:+20316433 Msa0539410:intron
CAAGTTGAAGGAAAATGGGG+TGG 0.698347 4_1:+20316860 Msa0539410:CDS
GTCGTTGGTGAAAGTCATGG+TGG 0.698948 4_1:+20317628 Msa0539410:three_prime_UTR
CATCATCCGACTCTACCAAG+TGG 0.700404 4_1:-20310459 None:intergenic
TAAATGGTGATATGTTACCA+AGG 0.708554 4_1:-20316923 None:intergenic
CCGCAGAGATGAATACTCCG+AGG 0.717928 4_1:-20309379 None:intergenic
CCTCGGAGTATTCATCTCTG+CGG 0.742424 4_1:+20309379 Msa0539410:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAACCAAAAAAAAAAAAA+AGG - chr4_1:20309490-20309509 None:intergenic 10.0%
!!! TTTTTTTTTTTTGGTTATTA+TGG + chr4_1:20309491-20309510 Msa0539410:intron 10.0%
!! TTAAAAAAAATCAAAAGTAA+AGG - chr4_1:20312986-20313005 None:intergenic 10.0%
!! ATAAATTATTTACAGAATAT+AGG + chr4_1:20313685-20313704 Msa0539410:intron 10.0%
!! AACTAAATAAATTTATTGTA+AGG - chr4_1:20313921-20313940 None:intergenic 10.0%
!! CAAGTTAATTTATTAAAAAT+AGG + chr4_1:20314529-20314548 Msa0539410:intron 10.0%
!! TAATTTATTAAAAATAGGAT+AGG + chr4_1:20314534-20314553 Msa0539410:intron 10.0%
!!! CTTTTAGAAAAAATAGATTT+TGG + chr4_1:20308455-20308474 Msa0539410:intron 15.0%
!!! AATAGAAGTGATTTTTTTTT+TGG + chr4_1:20308581-20308600 Msa0539410:intron 15.0%
!!! ATAGAAGTGATTTTTTTTTT+GGG + chr4_1:20308582-20308601 Msa0539410:intron 15.0%
!!! TTGATTTTGTAAAATTGATT+AGG + chr4_1:20308662-20308681 Msa0539410:intron 15.0%
!! TAAAGTTTGTCAAAAATATA+AGG - chr4_1:20309454-20309473 None:intergenic 15.0%
!!! GTTATTATGGTTTATTTTAT+TGG + chr4_1:20309504-20309523 Msa0539410:intron 15.0%
!! CTTATAAATAAGTTAACTTA+AGG + chr4_1:20309850-20309869 Msa0539410:intron 15.0%
!!! AAAATTTACTATCTCTAAAA+GGG - chr4_1:20310811-20310830 None:intergenic 15.0%
!! AAAAATTTACTATCTCTAAA+AGG - chr4_1:20310812-20310831 None:intergenic 15.0%
!! CAAACATAATTTATAAACAA+AGG - chr4_1:20311259-20311278 None:intergenic 15.0%
!! AAACATAATTTATGAACAAA+GGG - chr4_1:20311714-20311733 None:intergenic 15.0%
!! GATAAAATGTTAGATTAATT+TGG + chr4_1:20312044-20312063 Msa0539410:intron 15.0%
!!! TTAGATTAATTTGGAAAATT+CGG + chr4_1:20312053-20312072 Msa0539410:intron 15.0%
!! TTTGTATAAATACAATAGTT+TGG - chr4_1:20312079-20312098 None:intergenic 15.0%
!!! AACTTTGAAATAATGAATTT+AGG + chr4_1:20312107-20312126 Msa0539410:intron 15.0%
!!! ACTTTGAAATAATGAATTTA+GGG + chr4_1:20312108-20312127 Msa0539410:intron 15.0%
!!! TTATATTTTAAAAATGCTTG+TGG + chr4_1:20312606-20312625 Msa0539410:intron 15.0%
!! ACTTATGATATTATTTGTAA+AGG - chr4_1:20312911-20312930 None:intergenic 15.0%
!! TTCTGTAAATAATTTATATG+AGG - chr4_1:20313682-20313701 None:intergenic 15.0%
!! AAGAAATTTATAAAATCCAA+AGG - chr4_1:20315066-20315085 None:intergenic 15.0%
!!! TTGGATTTTATAAATTTCTT+TGG + chr4_1:20315066-20315085 Msa0539410:intron 15.0%
!!! TTATAAATTTCTTTGGTAAT+AGG + chr4_1:20315073-20315092 Msa0539410:intron 15.0%
!!! TTTTATAAACTTTTAAACGA+AGG - chr4_1:20315156-20315175 None:intergenic 15.0%
!! TACAAATAACTAGTTATTTA+AGG + chr4_1:20315665-20315684 Msa0539410:intron 15.0%
!!! TTTTTTTTTTGAGCAAATAT+TGG - chr4_1:20315699-20315718 None:intergenic 15.0%
!! TGCTCAAAAAAAAAAAAAAA+AGG + chr4_1:20315704-20315723 Msa0539410:intron 15.0%
!!! TTAAAGTTTAGGTTTTTGAT+CGG - chr4_1:20307967-20307986 None:intergenic 20.0%
!! AATTGTAAACTTTGAATTTC+AGG + chr4_1:20309192-20309211 Msa0539410:intron 20.0%
!!! TTTTAACTTAGACAAGTATT+TGG + chr4_1:20309638-20309657 Msa0539410:intron 20.0%
!! CAAACATAATTTAAGAACAA+AGG - chr4_1:20310846-20310865 None:intergenic 20.0%
!! AAAGTCAAAAAAGAAAAAGA+AGG + chr4_1:20310940-20310959 Msa0539410:five_prime_UTR 20.0%
!! AAGTCAAAAAAGAAAAAGAA+GGG + chr4_1:20310941-20310960 Msa0539410:five_prime_UTR 20.0%
!! AAAGTCAAAAAAGAAAAAGA+AGG + chr4_1:20310940-20310959 Msa0539410:five_prime_UTR 20.0%
!! AAGTCAAAAAAGAAAAAGAA+GGG + chr4_1:20310941-20310960 Msa0539410:five_prime_UTR 20.0%
!!! AATATTCAGTATCTCTAAAA+GGG - chr4_1:20311680-20311699 None:intergenic 20.0%
!! AAATATTCAGTATCTCTAAA+AGG - chr4_1:20311681-20311700 None:intergenic 20.0%
!! CAAACATAATTTATGAACAA+AGG - chr4_1:20311715-20311734 None:intergenic 20.0%
!! AAAAGTCAAAAAGAAAAAGA+AGG + chr4_1:20311808-20311827 Msa0539410:five_prime_UTR 20.0%
!! AAAGTCAAAAAGAAAAAGAA+GGG + chr4_1:20311809-20311828 Msa0539410:five_prime_UTR 20.0%
!! TTCATTATTTCAAAGTTTCA+AGG - chr4_1:20312104-20312123 None:intergenic 20.0%
!!! GAATTAGTTTGAAAAAAAAG+AGG - chr4_1:20312225-20312244 None:intergenic 20.0%
!! AAATGTTCAAAACTTAATTC+CGG + chr4_1:20312286-20312305 Msa0539410:intron 20.0%
!!! CTATTGATTTATCTATGATA+TGG - chr4_1:20312654-20312673 None:intergenic 20.0%
!! CATATCATAGATAAATCAAT+AGG + chr4_1:20312652-20312671 Msa0539410:intron 20.0%
!!! TTTTTCACCTAATTTTTAAG+TGG + chr4_1:20312848-20312867 Msa0539410:intron 20.0%
!! TATTATTTGTAAAGGAGTAA+AGG - chr4_1:20312903-20312922 None:intergenic 20.0%
!! ATGAAAAACCAAAGAAAAAA+AGG + chr4_1:20313366-20313385 Msa0539410:CDS 20.0%
!! CTACTTCTATTTATATAATC+AGG + chr4_1:20313511-20313530 Msa0539410:intron 20.0%
!! GTAAATAATTTATATGAGGA+AGG - chr4_1:20313678-20313697 None:intergenic 20.0%
!!! TGTTTTAAATAATTACCTTC+TGG + chr4_1:20313735-20313754 Msa0539410:intron 20.0%
!!! TGTCTTAATCTTTTCTTAAT+TGG + chr4_1:20314450-20314469 Msa0539410:intron 20.0%
!! AAAAATAGGATAGGAATAAA+AGG + chr4_1:20314543-20314562 Msa0539410:intron 20.0%
!! TTTAATAGAATCAATGTTTG+AGG + chr4_1:20315422-20315441 Msa0539410:intron 20.0%
!! AAATAAGTTGTAGTATGTTA+GGG - chr4_1:20316394-20316413 None:intergenic 20.0%
!! AAAATAAGTTGTAGTATGTT+AGG - chr4_1:20316395-20316414 None:intergenic 20.0%
!! ATAATCTTGGATATTATTTC+TGG + chr4_1:20316420-20316439 Msa0539410:intron 20.0%
!! TTTCTTAACTTTCTTATCTT+CGG - chr4_1:20316495-20316514 None:intergenic 20.0%
!! TAATAAAATGTTCTGGTAAA+TGG - chr4_1:20316942-20316961 None:intergenic 20.0%
!! AGAAAAGTTATAAAGATTCT+AGG - chr4_1:20317272-20317291 None:intergenic 20.0%
!!! ATTTTTCTTTTAGCACAAAA+AGG - chr4_1:20317682-20317701 None:intergenic 20.0%
!!! CCAATTTTGATATGCATTTA+GGG + chr4_1:20308237-20308256 Msa0539410:intron 25.0%
!! TTTTGACAAAAACTACACTT+TGG - chr4_1:20308985-20309004 None:intergenic 25.0%
!! ATGTTTGGAATACGAAATAA+TGG + chr4_1:20309063-20309082 Msa0539410:intron 25.0%
!!! GTGCACCTTTTTTTTTTTTT+TGG + chr4_1:20309482-20309501 Msa0539410:intron 25.0%
! TTTACACATTGAAATCATTC+AGG + chr4_1:20309542-20309561 Msa0539410:intron 25.0%
! ATTGAAATCATTCAGGAAAA+TGG + chr4_1:20309549-20309568 Msa0539410:intron 25.0%
! CATTTGATTAATGCTAAGTT+TGG + chr4_1:20309582-20309601 Msa0539410:intron 25.0%
! GTTTCAGAAAATATAGAGAT+TGG + chr4_1:20309874-20309893 Msa0539410:intron 25.0%
!!! GATAGTTTTATTAACGATGA+CGG + chr4_1:20310231-20310250 Msa0539410:five_prime_UTR 25.0%
! AGAAGAATAAATCCTTTGTA+AGG + chr4_1:20310581-20310600 Msa0539410:five_prime_UTR 25.0%
! GAAGAATAAATCCTTTGTAA+GGG + chr4_1:20310582-20310601 Msa0539410:five_prime_UTR 25.0%
! TTTCAATAATACTGTTCTCA+TGG - chr4_1:20310678-20310697 None:intergenic 25.0%
! AAAAAAGAAAAAGAAGGGAA+AGG + chr4_1:20310946-20310965 Msa0539410:five_prime_UTR 25.0%
! AAAATTTACAATCTCCAAGA+GGG - chr4_1:20311226-20311245 None:intergenic 25.0%
! AAAAATTTACAATCTCCAAG+AGG - chr4_1:20311227-20311246 None:intergenic 25.0%
!! TTTTTAATATCTCCAACATC+CGG - chr4_1:20311336-20311355 None:intergenic 25.0%
! AAAAAAGAAAAAGAAGGGAA+AGG + chr4_1:20310946-20310965 Msa0539410:five_prime_UTR 25.0%
!! TTTGAAAAAAAAGAGGTATG+AGG - chr4_1:20312218-20312237 None:intergenic 25.0%
!! ACATTGTTGGAATGAATTTT+CGG - chr4_1:20312360-20312379 None:intergenic 25.0%
! TGACATAGATTCATATAAGT+CGG - chr4_1:20312456-20312475 None:intergenic 25.0%
! AAATTAGGTGAAAAATTCAG+TGG - chr4_1:20312843-20312862 None:intergenic 25.0%
! ATGGTAACCACTTAAAAATT+AGG - chr4_1:20312858-20312877 None:intergenic 25.0%
!! ATATATGCATGAGAAGTTTT+AGG - chr4_1:20313081-20313100 None:intergenic 25.0%
! TCTTTACAAGTAACAACAAA+AGG - chr4_1:20313245-20313264 None:intergenic 25.0%
!! TTGTTACTTGTAAAGATTTC+TGG + chr4_1:20313249-20313268 Msa0539410:intron 25.0%
! AAAACCAAAGAAAAAAAGGA+AGG + chr4_1:20313370-20313389 Msa0539410:CDS 25.0%
! ATCAAATACCATATGTTGTA+GGG - chr4_1:20313559-20313578 None:intergenic 25.0%
! TATCAAATACCATATGTTGT+AGG - chr4_1:20313560-20313579 None:intergenic 25.0%
! ACAACATATGGTATTTGATA+TGG + chr4_1:20313560-20313579 Msa0539410:intron 25.0%
!!! CTTTTTTCAACTACTACAAA+AGG + chr4_1:20313819-20313838 Msa0539410:intron 25.0%
! TAAATTTATTGTAAGGAGAG+TGG - chr4_1:20313914-20313933 None:intergenic 25.0%
! AATTCAAATCACAGTGAAAA+TGG - chr4_1:20314002-20314021 None:intergenic 25.0%
!!! TTTTGTTATCTGATAACCTA+TGG + chr4_1:20314061-20314080 Msa0539410:intron 25.0%
!! TTTGTTATCTGATAACCTAT+GGG + chr4_1:20314062-20314081 Msa0539410:intron 25.0%
! ATTCTCAAAAGAAAACAAAG+AGG + chr4_1:20314142-20314161 Msa0539410:CDS 25.0%
!!! TACTTTTCAATTGTTAGCTT+CGG - chr4_1:20314315-20314334 None:intergenic 25.0%
! ATAAATTTCTATTGAGGACT+AGG - chr4_1:20314693-20314712 None:intergenic 25.0%
! TCCTCAATAGAAATTTATGT+TGG + chr4_1:20314695-20314714 Msa0539410:intron 25.0%
! CCTCAATAGAAATTTATGTT+GGG + chr4_1:20314696-20314715 Msa0539410:intron 25.0%
! TTATGTTGGGAAAATTAAAG+AGG + chr4_1:20314709-20314728 Msa0539410:intron 25.0%
! TATGTTGGGAAAATTAAAGA+GGG + chr4_1:20314710-20314729 Msa0539410:intron 25.0%
! AAAATTAAAGAGGGAAGAAA+GGG + chr4_1:20314719-20314738 Msa0539410:intron 25.0%
!! TCTTCTTCAATTTTTACCTT+TGG + chr4_1:20315047-20315066 Msa0539410:intron 25.0%
! AAGGATAATAAGCAAGTAAT+GGG - chr4_1:20315246-20315265 None:intergenic 25.0%
! AAAGGATAATAAGCAAGTAA+TGG - chr4_1:20315247-20315266 None:intergenic 25.0%
! TACTAAGAAGAATGAAACAA+AGG - chr4_1:20315265-20315284 None:intergenic 25.0%
! CTAAAACAAAATACTGTAGA+GGG - chr4_1:20315342-20315361 None:intergenic 25.0%
! ACTAAAACAAAATACTGTAG+AGG - chr4_1:20315343-20315362 None:intergenic 25.0%
! ACCAAAATACAATTAAAGAG+AGG + chr4_1:20315547-20315566 Msa0539410:intron 25.0%
!! GGTTCTAATCTTAAAATCTT+GGG + chr4_1:20315574-20315593 Msa0539410:intron 25.0%
! TCTTAAAATCTTGGGAAAAA+AGG + chr4_1:20315582-20315601 Msa0539410:intron 25.0%
! CTTAAAATCTTGGGAAAAAA+GGG + chr4_1:20315583-20315602 Msa0539410:intron 25.0%
! TTAATGATTTCCTTGGTTAT+TGG - chr4_1:20315737-20315756 None:intergenic 25.0%
!! GGTTTTCTATAAAAATTGGA+TGG - chr4_1:20316209-20316228 None:intergenic 25.0%
!! CACAGGTTTTCTATAAAAAT+TGG - chr4_1:20316213-20316232 None:intergenic 25.0%
!!! TCAGTTGTTTTCAAAGTTAA+AGG - chr4_1:20316285-20316304 None:intergenic 25.0%
! CTAAAAAACCGATGATAAAA+AGG + chr4_1:20316325-20316344 Msa0539410:intron 25.0%
!!! CTTATTTTGTGCAATAATCT+TGG + chr4_1:20316407-20316426 Msa0539410:intron 25.0%
! AAGAAGAAAAGTAAAAGTCA+GGG + chr4_1:20316518-20316537 Msa0539410:CDS 25.0%
! ATTAATGTTTGTCTTCATAG+AGG - chr4_1:20316773-20316792 None:intergenic 25.0%
!! TACCAGAACATTTTATTATC+TGG + chr4_1:20316944-20316963 Msa0539410:CDS 25.0%
! ATCCAGATAATAAAATGTTC+TGG - chr4_1:20316949-20316968 None:intergenic 25.0%
! AGGAAAAAAAAAACAGAGTA+AGG - chr4_1:20317249-20317268 None:intergenic 25.0%
! AAAGTTATAAAGATTCTAGG+AGG - chr4_1:20317269-20317288 None:intergenic 25.0%
! TGTTATCATACAATTGAATC+CGG - chr4_1:20317473-20317492 None:intergenic 25.0%
! ATCTGAAAGAAACAAAACTT+TGG - chr4_1:20317580-20317599 None:intergenic 25.0%
!!! ATGGTGGTTTTAAGATATAT+GGG + chr4_1:20317644-20317663 Msa0539410:three_prime_UTR 25.0%
CAGAGAGTGAATTAAAGTTT+AGG - chr4_1:20307978-20307997 None:intergenic 30.0%
AGATTACCATTGAAATGTGA+AGG - chr4_1:20308084-20308103 None:intergenic 30.0%
!! GCCAATTTTGATATGCATTT+AGG + chr4_1:20308236-20308255 Msa0539410:intron 30.0%
CCCTAAATGCATATCAAAAT+TGG - chr4_1:20308240-20308259 None:intergenic 30.0%
!!! ATGTGAAGTGGTTTTATGTT+TGG + chr4_1:20308701-20308720 Msa0539410:intron 30.0%
!!! TGTGAAGTGGTTTTATGTTT+GGG + chr4_1:20308702-20308721 Msa0539410:intron 30.0%
! ATTGATTCTAACTTGAAGCT+AGG - chr4_1:20308801-20308820 None:intergenic 30.0%
CAAGTTAGAATCAATTCTAG+AGG + chr4_1:20308806-20308825 Msa0539410:intron 30.0%
TTTGACAAGTTTAGTTGCTA+TGG - chr4_1:20308848-20308867 None:intergenic 30.0%
! TTTGGAATACGAAATAATGG+TGG + chr4_1:20309066-20309085 Msa0539410:intron 30.0%
GTTAGGCAAAAACTATACTT+AGG - chr4_1:20309113-20309132 None:intergenic 30.0%
AATGTGTAAAAAATGCATGC+TGG - chr4_1:20309532-20309551 None:intergenic 30.0%
GTGCTTATAAAGTTAACCAA+AGG + chr4_1:20309691-20309710 Msa0539410:intron 30.0%
ATTACATGATAATCCAACCA+TGG - chr4_1:20309754-20309773 None:intergenic 30.0%
! AAGTATTCGATTTTGAGCTT+AGG + chr4_1:20309807-20309826 Msa0539410:intron 30.0%
GAACTTCTTAGAACTAGATT+GGG - chr4_1:20309993-20310012 None:intergenic 30.0%
TGAACTTCTTAGAACTAGAT+TGG - chr4_1:20309994-20310013 None:intergenic 30.0%
GTTAAGCCTGAATCATTATT+TGG + chr4_1:20310031-20310050 Msa0539410:intron 30.0%
CACAATCCAAATAATGATTC+AGG - chr4_1:20310040-20310059 None:intergenic 30.0%
AGAAAAAGGACAATTGGATT+TGG - chr4_1:20310095-20310114 None:intergenic 30.0%
! CAATTGTCCTTTTTCTTTGT+GGG + chr4_1:20310099-20310118 Msa0539410:intron 30.0%
AAAGAAACCCACAAAGAAAA+AGG - chr4_1:20310109-20310128 None:intergenic 30.0%
!! AGATTTCTCTGTTTCTGTAT+TGG - chr4_1:20310184-20310203 None:intergenic 30.0%
AATGATGCAAACATCATCAA+GGG - chr4_1:20310345-20310364 None:intergenic 30.0%
AAATGATGCAAACATCATCA+AGG - chr4_1:20310346-20310365 None:intergenic 30.0%
TTCTTGCAAAGAGAAGAAAT+TGG - chr4_1:20310565-20310584 None:intergenic 30.0%
! TAAATCCTTTGTAAGGGTAT+TGG + chr4_1:20310588-20310607 Msa0539410:five_prime_UTR 30.0%
!! ACTTGCTTTTCTCATCTTTA+AGG + chr4_1:20310781-20310800 Msa0539410:intron 30.0%
AATTATGTTTGTACTGAAGC+AGG + chr4_1:20310855-20310874 Msa0539410:intron 30.0%
ATTATGTTTGTACTGAAGCA+GGG + chr4_1:20310856-20310875 Msa0539410:intron 30.0%
! TTTTTATTATCCCCAACATC+CGG - chr4_1:20310923-20310942 None:intergenic 30.0%
! TAGTGCTACTGAAACAAAAT+TGG + chr4_1:20311117-20311136 Msa0539410:five_prime_UTR 30.0%
ATTATGTTTGTACTGTAGCA+AGG + chr4_1:20311269-20311288 Msa0539410:intron 30.0%
AATTATGTTTGTACTGAAGC+AGG + chr4_1:20310855-20310874 Msa0539410:intron 30.0%
ATTATGTTTGTACTGAAGCA+GGG + chr4_1:20310856-20310875 Msa0539410:intron 30.0%
CAAAAAGAAAAAGAAGGGAA+AGG + chr4_1:20311814-20311833 Msa0539410:five_prime_UTR 30.0%
ATGAACACTCACTTATCATT+AGG - chr4_1:20311962-20311981 None:intergenic 30.0%
!! TCTCTATATTTGTTGTTCAC+AGG + chr4_1:20312022-20312041 Msa0539410:intron 30.0%
!!! TTAATTCCGGTCAGTTTTTT+TGG + chr4_1:20312299-20312318 Msa0539410:intron 30.0%
!!! GTTTTTTTGGAATGTCAAGT+TGG + chr4_1:20312312-20312331 Msa0539410:intron 30.0%
GAAACAAACACATACATTGT+TGG - chr4_1:20312373-20312392 None:intergenic 30.0%
TTGTGGATCTTTCTTACATT+AGG + chr4_1:20312623-20312642 Msa0539410:intron 30.0%
!!! TTAAATGATGCTGGTTTTGT+GGG + chr4_1:20312676-20312695 Msa0539410:intron 30.0%
!! TTTTTCAGCTGCAATGTTAA+CGG - chr4_1:20312791-20312810 None:intergenic 30.0%
AACATTGCAGCTGAAAAATT+CGG + chr4_1:20312793-20312812 Msa0539410:intron 30.0%
! TGAATACACCATTTTCAGTA+TGG - chr4_1:20312877-20312896 None:intergenic 30.0%
CTATAGCAGAATATGAGTAA+GGG - chr4_1:20312938-20312957 None:intergenic 30.0%
ACTATAGCAGAATATGAGTA+AGG - chr4_1:20312939-20312958 None:intergenic 30.0%
TACTCATATTCTGCTATAGT+AGG + chr4_1:20312939-20312958 Msa0539410:intron 30.0%
!! TGCTATAGTAGGAGTTTTAT+TGG + chr4_1:20312950-20312969 Msa0539410:intron 30.0%
AAATCAAAAGTAAAGGCAAC+TGG - chr4_1:20312979-20312998 None:intergenic 30.0%
TACCTAATAGCTATTCACTT+TGG + chr4_1:20313126-20313145 Msa0539410:intron 30.0%
!! ACTTGTAAAGATTTCTGGTT+TGG + chr4_1:20313254-20313273 Msa0539410:intron 30.0%
TTGTTGATCATTGTTGTCTT+TGG + chr4_1:20313277-20313296 Msa0539410:intron 30.0%
TAAAATACTACCTTCTTCAC+AGG + chr4_1:20313328-20313347 Msa0539410:CDS 30.0%
GTAGGGTTATTCTAGTATTA+CGG - chr4_1:20313542-20313561 None:intergenic 30.0%
TAGAATAACCCTACAACATA+TGG + chr4_1:20313548-20313567 Msa0539410:intron 30.0%
! GTTGAAAAAAGCACAATTGT+AGG - chr4_1:20313810-20313829 None:intergenic 30.0%
!!! AACTTATTTTGTGCACTTGA+GGG - chr4_1:20313876-20313895 None:intergenic 30.0%
!!! TAACTTATTTTGTGCACTTG+AGG - chr4_1:20313877-20313896 None:intergenic 30.0%
! AGTGATGCAGTATGAAATTT+TGG - chr4_1:20313978-20313997 None:intergenic 30.0%
ATAACCTATGGGAAATTAGA+AGG + chr4_1:20314073-20314092 Msa0539410:intron 30.0%
TAACCTATGGGAAATTAGAA+GGG + chr4_1:20314074-20314093 Msa0539410:intron 30.0%
TATATCCCTTACTACGATAA+TGG - chr4_1:20314370-20314389 None:intergenic 30.0%
ACCAAATCAATTTCTTGTGA+TGG + chr4_1:20314419-20314438 Msa0539410:intron 30.0%
TCCATCACAAGAAATTGATT+TGG - chr4_1:20314423-20314442 None:intergenic 30.0%
TTGCAAAACTGCACAAATTT+AGG - chr4_1:20314512-20314531 None:intergenic 30.0%
CGTTGTTCAAAGAGATTATT+AGG - chr4_1:20314602-20314621 None:intergenic 30.0%
CCCAACATAAATTTCTATTG+AGG - chr4_1:20314699-20314718 None:intergenic 30.0%
GAAAATTAAAGAGGGAAGAA+AGG + chr4_1:20314718-20314737 Msa0539410:intron 30.0%
ATGTGAAAGATAACTGCAAA+AGG - chr4_1:20314916-20314935 None:intergenic 30.0%
GAATTAAAATGCACAACTAC+TGG - chr4_1:20314961-20314980 None:intergenic 30.0%
CTCACAGAATATAGAAAGTA+AGG - chr4_1:20314983-20315002 None:intergenic 30.0%
TAATAGACGTAACACTTGAT+AGG - chr4_1:20315112-20315131 None:intergenic 30.0%
! AGAATTCATGTTTTCCCATT+TGG - chr4_1:20315378-20315397 None:intergenic 30.0%
! GCCTCTCTTTAATTGTATTT+TGG - chr4_1:20315551-20315570 None:intergenic 30.0%
! CGGTTCTAATCTTAAAATCT+TGG + chr4_1:20315573-20315592 Msa0539410:intron 30.0%
TATCATTGTTGTGTTGTGAT+TGG + chr4_1:20315613-20315632 Msa0539410:intron 30.0%
ATCATTGTTGTGTTGTGATT+GGG + chr4_1:20315614-20315633 Msa0539410:intron 30.0%
!! TTAAGCGTACACTTTAAGAT+GGG - chr4_1:20315805-20315824 None:intergenic 30.0%
! TTTAAGCGTACACTTTAAGA+TGG - chr4_1:20315806-20315825 None:intergenic 30.0%
GCAAAAATGAAAAAGAAGAG+TGG - chr4_1:20315877-20315896 None:intergenic 30.0%
GCATACAAAAAAGAAATACG+AGG - chr4_1:20315995-20316014 None:intergenic 30.0%
ATGAAACCATGACTACAATT+AGG - chr4_1:20316062-20316081 None:intergenic 30.0%
CCCAAAAAAGTAAATGCATT+GGG - chr4_1:20316123-20316142 None:intergenic 30.0%
!!! CCCAATGCATTTACTTTTTT+GGG + chr4_1:20316120-20316139 Msa0539410:intron 30.0%
TCCCAAAAAAGTAAATGCAT+TGG - chr4_1:20316124-20316143 None:intergenic 30.0%
AAAACCTGTGAAATACTTGT+TGG + chr4_1:20316223-20316242 Msa0539410:intron 30.0%
AAACCTGTGAAATACTTGTT+GGG + chr4_1:20316224-20316243 Msa0539410:intron 30.0%
! TTGTTGGGTAATGGTATAAT+TGG + chr4_1:20316239-20316258 Msa0539410:intron 30.0%
! CCATCTTTCCTTTTTATCAT+CGG - chr4_1:20316336-20316355 None:intergenic 30.0%
GAAGAAGAAAAGTAAAAGTC+AGG + chr4_1:20316517-20316536 Msa0539410:CDS 30.0%
ATTTGACAATGTTCGAACTT+GGG - chr4_1:20316639-20316658 None:intergenic 30.0%
TAAATGGTGATATGTTACCA+AGG - chr4_1:20316926-20316945 None:intergenic 30.0%
GGATATGACTATTGTATACT+TGG + chr4_1:20316965-20316984 Msa0539410:CDS 30.0%
! TTTCTCTTTTCATGATTCTC+AGG + chr4_1:20317136-20317155 Msa0539410:intron 30.0%
TAAATCACATACGTCATTGA+TGG - chr4_1:20317199-20317218 None:intergenic 30.0%
TTCTAATATGTGCATGTTTC+AGG + chr4_1:20317288-20317307 Msa0539410:intron 30.0%
AAAACATACCACCAAATTCA+TGG + chr4_1:20317333-20317352 Msa0539410:CDS 30.0%
TCATAAACCAACCATGAATT+TGG - chr4_1:20317347-20317366 None:intergenic 30.0%
GAGTGAATATGGGAAATATA+TGG + chr4_1:20317427-20317446 Msa0539410:three_prime_UTR 30.0%
ATACCAAAAATGAATCACGA+GGG - chr4_1:20317525-20317544 None:intergenic 30.0%
TATACCAAAAATGAATCACG+AGG - chr4_1:20317526-20317545 None:intergenic 30.0%
!!! GTGATTCATTTTTGGTATAG+AGG + chr4_1:20317527-20317546 Msa0539410:three_prime_UTR 30.0%
!!! CATGGTGGTTTTAAGATATA+TGG + chr4_1:20317643-20317662 Msa0539410:three_prime_UTR 30.0%
!!! GGTTTTAAGATATATGGGAT+TGG + chr4_1:20317649-20317668 Msa0539410:three_prime_UTR 30.0%
!!! CTCTGAAACAATGGCTTTTT+GGG + chr4_1:20307914-20307933 Msa0539410:five_prime_UTR 35.0%
!! TCTGAAACAATGGCTTTTTG+GGG + chr4_1:20307915-20307934 Msa0539410:five_prime_UTR 35.0%
GAATCATAAGTGTGAGTGAA+AGG - chr4_1:20308049-20308068 None:intergenic 35.0%
CACACTTATGATTCTTCCAA+AGG + chr4_1:20308055-20308074 Msa0539410:five_prime_UTR 35.0%
CGGTGCAAATAACAGTAAAA+TGG - chr4_1:20308139-20308158 None:intergenic 35.0%
CAAAAGCTTCAACAAAATCG+CGG - chr4_1:20308159-20308178 None:intergenic 35.0%
!! ACTGTGAGTTAGTTTGTTAC+TGG + chr4_1:20308195-20308214 Msa0539410:intron 35.0%
!! CTGTGAGTTAGTTTGTTACT+GGG + chr4_1:20308196-20308215 Msa0539410:intron 35.0%
ATCAAAATTGGCCGTGAATT+TGG - chr4_1:20308228-20308247 None:intergenic 35.0%
! ATATGCATTTAGGGTGTGTT+TGG + chr4_1:20308246-20308265 Msa0539410:intron 35.0%
GGTAAAAAAACCCAAACGAA+CGG + chr4_1:20308603-20308622 Msa0539410:intron 35.0%
GTAAAAAAACCCAAACGAAC+GGG + chr4_1:20308604-20308623 Msa0539410:intron 35.0%
CAAAACCAAACACACACTAA+AGG - chr4_1:20308630-20308649 None:intergenic 35.0%
TACACTTCCAGAATCAATTC+TGG + chr4_1:20308876-20308895 Msa0539410:intron 35.0%
ACATGCAATACGTTCATGTT+TGG - chr4_1:20308907-20308926 None:intergenic 35.0%
ACATGAACGTATTGCATGTT+TGG + chr4_1:20308908-20308927 Msa0539410:intron 35.0%
CATTGAGTGCATATTTGGAT+TGG - chr4_1:20309042-20309061 None:intergenic 35.0%
ACATGCATTGAGTGCATATT+TGG - chr4_1:20309047-20309066 None:intergenic 35.0%
ATATGCACTCAATGCATGTT+TGG + chr4_1:20309048-20309067 Msa0539410:intron 35.0%
AACAGTTTAAGTGCAAGCTT+AGG - chr4_1:20309146-20309165 None:intergenic 35.0%
! TTTGAATTTCAGGCCACTTT+GGG + chr4_1:20309202-20309221 Msa0539410:intron 35.0%
! TAAAGAGAGCACAGATAAAC+AGG - chr4_1:20309283-20309302 None:intergenic 35.0%
TGAGTCCTTGCAATTGAATT+TGG + chr4_1:20309315-20309334 Msa0539410:five_prime_UTR 35.0%
AAGCTCCAAATTCAATTGCA+AGG - chr4_1:20309323-20309342 None:intergenic 35.0%
AATGTTATTCTTTCCGTCCT+TGG + chr4_1:20309355-20309374 Msa0539410:five_prime_UTR 35.0%
CATTCAGGAAAATGGAAACT+TGG + chr4_1:20309557-20309576 Msa0539410:intron 35.0%
! AAGTTGATTAAGTCCATGGT+TGG + chr4_1:20309738-20309757 Msa0539410:intron 35.0%
CCACAAAGAAAAAGGACAAT+TGG - chr4_1:20310101-20310120 None:intergenic 35.0%
! CCAATTGTCCTTTTTCTTTG+TGG + chr4_1:20310098-20310117 Msa0539410:intron 35.0%
CTTGATTTCCTTCACTACAA+TGG + chr4_1:20310131-20310150 Msa0539410:intron 35.0%
TTTCCTTCACTACAATGGAA+AGG + chr4_1:20310136-20310155 Msa0539410:intron 35.0%
TTCCTTCACTACAATGGAAA+GGG + chr4_1:20310137-20310156 Msa0539410:intron 35.0%
ACAATGGAAAGGGAATCATA+TGG + chr4_1:20310147-20310166 Msa0539410:intron 35.0%
ATATTTGAGCTTGCCTTCAT+TGG - chr4_1:20310289-20310308 None:intergenic 35.0%
ACATCATCAAGGGATTGAAA+TGG - chr4_1:20310335-20310354 None:intergenic 35.0%
GACAAAGAATCAATTGATGC+TGG + chr4_1:20310634-20310653 Msa0539410:five_prime_UTR 35.0%
! GAAACCAAGAGTTCTAGTAA+TGG + chr4_1:20311387-20311406 Msa0539410:intron 35.0%
TTGTGCAGCATTATCTAGTT+CGG - chr4_1:20310987-20311006 None:intergenic 35.0%
AGATGAGCCAAAAATGAACA+TGG + chr4_1:20311006-20311025 Msa0539410:five_prime_UTR 35.0%
!! GTTGATGATGGCAAAAAAGA+CGG + chr4_1:20311513-20311532 Msa0539410:five_prime_UTR 35.0%
TCGCAGATATTCAAACTCAT+AGG + chr4_1:20311589-20311608 Msa0539410:five_prime_UTR 35.0%
GCAAGTGTGTATTTGAACAA+TGG - chr4_1:20311635-20311654 None:intergenic 35.0%
! TTTTTCATATCCCCAACATC+CGG - chr4_1:20311792-20311811 None:intergenic 35.0%
ATGTTCATTACTAGAGCTCT+TGG - chr4_1:20311849-20311868 None:intergenic 35.0%
! AAGCACTCGTAATATTTCTG+CGG - chr4_1:20312144-20312163 None:intergenic 35.0%
GAGTGCTTGATTTAAAGATG+AGG + chr4_1:20312156-20312175 Msa0539410:intron 35.0%
!! CAGGTTGCTATTTATATCTC+AGG + chr4_1:20312179-20312198 Msa0539410:intron 35.0%
ACTTCTATTTAGTGTCAAGC+TGG + chr4_1:20312255-20312274 Msa0539410:intron 35.0%
GACATTCCAAAAAAACTGAC+CGG - chr4_1:20312308-20312327 None:intergenic 35.0%
TTTGTTTCAAATGACCCATG+TGG + chr4_1:20312385-20312404 Msa0539410:intron 35.0%
TATACTGTACATTGCCACAT+GGG - chr4_1:20312402-20312421 None:intergenic 35.0%
TATGAATCTATGTCACCACT+TGG + chr4_1:20312461-20312480 Msa0539410:intron 35.0%
!!! GCGGTTACTTTTTACTTTGA+CGG + chr4_1:20312570-20312589 Msa0539410:intron 35.0%
!!! CGGTTACTTTTTACTTTGAC+GGG + chr4_1:20312571-20312590 Msa0539410:intron 35.0%
GATCTTTCTTACATTAGGCA+TGG + chr4_1:20312628-20312647 Msa0539410:intron 35.0%
TCAATAGGCTTAAATGATGC+TGG + chr4_1:20312667-20312686 Msa0539410:intron 35.0%
!!! CTTAAATGATGCTGGTTTTG+TGG + chr4_1:20312675-20312694 Msa0539410:intron 35.0%
!! TTTTCTTCTAAGAGTCAGAC+TGG + chr4_1:20312761-20312780 Msa0539410:intron 35.0%
ACATTGCAGCTGAAAAATTC+GGG + chr4_1:20312794-20312813 Msa0539410:intron 35.0%
AGTGGTTACCATACTGAAAA+TGG + chr4_1:20312866-20312885 Msa0539410:intron 35.0%
TGCCAAAGTGAATAGCTATT+AGG - chr4_1:20313131-20313150 None:intergenic 35.0%
GCAATGTTCTTGAACATGAA+AGG + chr4_1:20313193-20313212 Msa0539410:intron 35.0%
TCATTGTTGTCTTTGGTATG+AGG + chr4_1:20313284-20313303 Msa0539410:intron 35.0%
! AGAAGGTAGTATTTTATCCG+TGG - chr4_1:20313324-20313343 None:intergenic 35.0%
CAAAGAAAAAAAGGAAGGAG+CGG + chr4_1:20313375-20313394 Msa0539410:CDS 35.0%
AGTAATCAGGACACAGTTAA+TGG + chr4_1:20313473-20313492 Msa0539410:CDS 35.0%
GTAATCAGGACACAGTTAAT+GGG + chr4_1:20313474-20313493 Msa0539410:CDS 35.0%
TTGAAATACTCTTCATGTCC+TGG + chr4_1:20313591-20313610 Msa0539410:intron 35.0%
GAGTTCTATTGCATATATCC+AGG - chr4_1:20313612-20313631 None:intergenic 35.0%
TCAATGTAGATGTCATGTTC+AGG + chr4_1:20313945-20313964 Msa0539410:intron 35.0%
ATTAAAATTGCGTTGCATCC+TGG + chr4_1:20314019-20314038 Msa0539410:intron 35.0%
!!! TTAGTCTTCTCTTTTTTGCC+AGG - chr4_1:20314040-20314059 None:intergenic 35.0%
AAACTTATCACTCAGACCAT+CGG - chr4_1:20314271-20314290 None:intergenic 35.0%
!! CTACGATAATGGAGAGATAT+TGG - chr4_1:20314359-20314378 None:intergenic 35.0%
ATCTCTCCATTATCGTAGTA+AGG + chr4_1:20314361-20314380 Msa0539410:intron 35.0%
TCTCTCCATTATCGTAGTAA+GGG + chr4_1:20314362-20314381 Msa0539410:intron 35.0%
GATTCCATCATTCATCTCTT+TGG + chr4_1:20314390-20314409 Msa0539410:intron 35.0%
ATTGCCAAAGAGATGAATGA+TGG - chr4_1:20314397-20314416 None:intergenic 35.0%
TAGGACCAAATGACATAAGA+TGG - chr4_1:20314632-20314651 None:intergenic 35.0%
TTATCTGGGGAAATCATTAG+TGG + chr4_1:20314827-20314846 Msa0539410:intron 35.0%
GGAAATCATTAGTGGTAGTT+AGG + chr4_1:20314835-20314854 Msa0539410:intron 35.0%
CAGACAATATTGTTCTCTGT+AGG + chr4_1:20314859-20314878 Msa0539410:intron 35.0%
GCAAAAGGATGAATATCCTA+AGG - chr4_1:20314901-20314920 None:intergenic 35.0%
GCAACAAACTATCTTACCAT+TGG + chr4_1:20315021-20315040 Msa0539410:intron 35.0%
AAATTGAAGAAGACTGCCAA+TGG - chr4_1:20315040-20315059 None:intergenic 35.0%
!! TAAGCAAGTAATGGGCATTA+AGG - chr4_1:20315238-20315257 None:intergenic 35.0%
! ATTCATGTTTTCCCATTTGG+TGG - chr4_1:20315375-20315394 None:intergenic 35.0%
ATACAATTAAAGAGAGGCTG+CGG + chr4_1:20315553-20315572 Msa0539410:intron 35.0%
GCATGAGTTAATGATTTCCT+TGG - chr4_1:20315744-20315763 None:intergenic 35.0%
!! ACTTTAAGATGGGGTAACAT+AGG - chr4_1:20315795-20315814 None:intergenic 35.0%
!! TAAGCGTACACTTTAAGATG+GGG - chr4_1:20315804-20315823 None:intergenic 35.0%
ACAGTTTGAGTGAGAATAAG+TGG - chr4_1:20315842-20315861 None:intergenic 35.0%
ATATGCGCCAGTAACAAAAT+GGG - chr4_1:20316021-20316040 None:intergenic 35.0%
AATATGCGCCAGTAACAAAA+TGG - chr4_1:20316022-20316041 None:intergenic 35.0%
AACTCTCCTAATTGTAGTCA+TGG + chr4_1:20316053-20316072 Msa0539410:intron 35.0%
TTCATGCTGTGTGAGTTAAA+AGG + chr4_1:20316092-20316111 Msa0539410:intron 35.0%
!!! GCCCAATGCATTTACTTTTT+TGG + chr4_1:20316119-20316138 Msa0539410:intron 35.0%
TTACCCAACAAGTATTTCAC+AGG - chr4_1:20316230-20316249 None:intergenic 35.0%
! GTGAAATACTTGTTGGGTAA+TGG + chr4_1:20316230-20316249 Msa0539410:intron 35.0%
CCGATGATAAAAAGGAAAGA+TGG + chr4_1:20316333-20316352 Msa0539410:intron 35.0%
CATTTGACAATGTTCGAACT+TGG - chr4_1:20316640-20316659 None:intergenic 35.0%
CAAGTTCGAACATTGTCAAA+TGG + chr4_1:20316638-20316657 Msa0539410:CDS 35.0%
TTATTCAAGAGCTTGAGACA+GGG + chr4_1:20316666-20316685 Msa0539410:CDS 35.0%
TTGAGACAGGGAAAGAAAAT+GGG + chr4_1:20316678-20316697 Msa0539410:CDS 35.0%
TTACCAAGGCGAAATTTGAA+AGG - chr4_1:20316912-20316931 None:intergenic 35.0%
AGGTAAAGGAGAAGTTATTG+AGG + chr4_1:20317013-20317032 Msa0539410:CDS 35.0%
GGTAAAGGAGAAGTTATTGA+GGG + chr4_1:20317014-20317033 Msa0539410:CDS 35.0%
TAAACCAACCATGAATTTGG+TGG - chr4_1:20317344-20317363 None:intergenic 35.0%
! GTTGGTTTATGACTTTGAAC+TGG + chr4_1:20317355-20317374 Msa0539410:CDS 35.0%
TGGTCATGTTTGAGTGAATA+TGG + chr4_1:20317416-20317435 Msa0539410:three_prime_UTR 35.0%
GGTCATGTTTGAGTGAATAT+GGG + chr4_1:20317417-20317436 Msa0539410:three_prime_UTR 35.0%
TATGGGAAATATATGGAGTC+AGG + chr4_1:20317434-20317453 Msa0539410:three_prime_UTR 35.0%
! ACAGTTTTCTGTTGAATCTC+TGG + chr4_1:20317490-20317509 Msa0539410:three_prime_UTR 35.0%
TACCAAAAATGAATCACGAG+GGG - chr4_1:20317524-20317543 None:intergenic 35.0%
!! TTTTTGGTATAGAGGACAGT+TGG + chr4_1:20317535-20317554 Msa0539410:three_prime_UTR 35.0%
CAACATTATATGTGGAGACA+TGG - chr4_1:20317741-20317760 None:intergenic 35.0%
!! CAACTCTTCCTCTGAAACAA+TGG + chr4_1:20307905-20307924 Msa0539410:five_prime_UTR 40.0%
CCAAAAAGCCATTGTTTCAG+AGG - chr4_1:20307916-20307935 None:intergenic 40.0%
!!! CCTCTGAAACAATGGCTTTT+TGG + chr4_1:20307913-20307932 Msa0539410:five_prime_UTR 40.0%
CTGATTGTGATTGTGATTGC+AGG + chr4_1:20308001-20308020 Msa0539410:intron 40.0%
! CATTTAGGGTGTGTTTGGTT+TGG + chr4_1:20308251-20308270 Msa0539410:intron 40.0%
AAAGCGAGCTTAATGTGAAG+TGG + chr4_1:20308689-20308708 Msa0539410:intron 40.0%
CAAGTTTAGTTGCTATGGAG+TGG - chr4_1:20308843-20308862 None:intergenic 40.0%
TAGGAGCCTCAACAAAATCA+TGG - chr4_1:20309094-20309113 None:intergenic 40.0%
!! GCTTAGGTTGATGGTAAGTT+AGG - chr4_1:20309130-20309149 None:intergenic 40.0%
!! TAAGTGCAAGCTTAGGTTGA+TGG - chr4_1:20309139-20309158 None:intergenic 40.0%
CTTTGAATTTCAGGCCACTT+TGG + chr4_1:20309201-20309220 Msa0539410:intron 40.0%
AAGCACTCTGCAATGTAATG+TGG + chr4_1:20309246-20309265 Msa0539410:five_prime_UTR 40.0%
AGCACTCTGCAATGTAATGT+GGG + chr4_1:20309247-20309266 Msa0539410:five_prime_UTR 40.0%
TATCTGTGCTCTCTTTATCC+AGG + chr4_1:20309286-20309305 Msa0539410:five_prime_UTR 40.0%
! GCAATTGAATTTGGAGCTTG+AGG + chr4_1:20309324-20309343 Msa0539410:five_prime_UTR 40.0%
! AATTTGGAGCTTGAGGAAGA+TGG + chr4_1:20309331-20309350 Msa0539410:five_prime_UTR 40.0%
CATCCATAGTATTGCCATAG+CGG - chr4_1:20309423-20309442 None:intergenic 40.0%
TCTATTCTCAGAAGCTCCTT+TGG - chr4_1:20309710-20309729 None:intergenic 40.0%
! GAGCTTCTGAGAATAGAGTT+GGG + chr4_1:20309713-20309732 Msa0539410:intron 40.0%
! AGCTTCTGAGAATAGAGTTG+GGG + chr4_1:20309714-20309733 Msa0539410:intron 40.0%
GTTCACATTGAGTCCTTTGA+TGG + chr4_1:20310009-20310028 Msa0539410:intron 40.0%
GATTCAGGCTTAACCATCAA+AGG - chr4_1:20310025-20310044 None:intergenic 40.0%
TTCCCTTTCCATTGTAGTGA+AGG - chr4_1:20310142-20310161 None:intergenic 40.0%
GCATCTCCTATTTCCAATGA+AGG + chr4_1:20310273-20310292 Msa0539410:five_prime_UTR 40.0%
AGCTTGCCTTCATTGGAAAT+AGG - chr4_1:20310282-20310301 None:intergenic 40.0%
TTTGACTGTGATTACTGCAG+AGG + chr4_1:20310372-20310391 Msa0539410:intron 40.0%
CTGATCCAATACCCTTACAA+AGG - chr4_1:20310596-20310615 None:intergenic 40.0%
!! CTTTGTAAGGGTATTGGATC+AGG + chr4_1:20310594-20310613 Msa0539410:five_prime_UTR 40.0%
!! AAGGGTATTGGATCAGGAAA+TGG + chr4_1:20310600-20310619 Msa0539410:five_prime_UTR 40.0%
TCACTGAGAGTCAGATTCAT+AGG + chr4_1:20310722-20310741 Msa0539410:five_prime_UTR 40.0%
! AGCATTATCTAGTTCAGTGG+AGG - chr4_1:20310981-20311000 None:intergenic 40.0%
! TGCAGCATTATCTAGTTCAG+TGG - chr4_1:20310984-20311003 None:intergenic 40.0%
TTCCTGATCAAAGTGATCCT+GGG - chr4_1:20311032-20311051 None:intergenic 40.0%
TTTCCTGATCAAAGTGATCC+TGG - chr4_1:20311033-20311052 None:intergenic 40.0%
GTTGATGCTGGCAAAAAAGA+CGG + chr4_1:20311079-20311098 Msa0539410:five_prime_UTR 40.0%
TTTCAGTAGCACTACTCTCA+TGG - chr4_1:20311111-20311130 None:intergenic 40.0%
ATCGCCATTACTAGAACTCT+TGG - chr4_1:20311394-20311413 None:intergenic 40.0%
!! GACAAAGAAGCAGTTGATGA+TGG + chr4_1:20311501-20311520 Msa0539410:five_prime_UTR 40.0%
TTGCGCAGCATTATCTAGAT+CGG - chr4_1:20311876-20311895 None:intergenic 40.0%
! TCCTCGTCTGTGTTCATTTT+TGG - chr4_1:20311905-20311924 None:intergenic 40.0%
! ACTTATCATTAGGTTGCTGC+TGG - chr4_1:20311952-20311971 None:intergenic 40.0%
GCTTGATTTAAAGATGAGGC+AGG + chr4_1:20312160-20312179 Msa0539410:intron 40.0%
CTATACTGTACATTGCCACA+TGG - chr4_1:20312403-20312422 None:intergenic 40.0%
TGTGGCAATGTACAGTATAG+TGG + chr4_1:20312403-20312422 Msa0539410:intron 40.0%
CATTGCAGCTGAAAAATTCG+GGG + chr4_1:20312795-20312814 Msa0539410:intron 40.0%
CTTACACCTTTGTTCTGCAT+CGG + chr4_1:20313161-20313180 Msa0539410:intron 40.0%
ATACTACCTTCTTCACAGGT+TGG + chr4_1:20313332-20313351 Msa0539410:CDS 40.0%
!!! CGCTCCTTCCTTTTTTTCTT+TGG - chr4_1:20313377-20313396 None:intergenic 40.0%
AATGTTGTTAACCTGCCTCA+GGG + chr4_1:20313440-20313459 Msa0539410:CDS 40.0%
TTACTGTGTTCATTTCCCTG+AGG - chr4_1:20313458-20313477 None:intergenic 40.0%
GGGAAATGAACACAGTAATC+AGG + chr4_1:20313460-20313479 Msa0539410:CDS 40.0%
TGATGATTCAACAGACACCT+AGG + chr4_1:20313648-20313667 Msa0539410:intron 40.0%
TCAAGAGAAGTCATACCAGA+AGG - chr4_1:20313753-20313772 None:intergenic 40.0%
AAAATGCGCGGTATATCGAA+AGG - chr4_1:20313781-20313800 None:intergenic 40.0%
TGTAGGAAGAACAAAATGCG+CGG - chr4_1:20313793-20313812 None:intergenic 40.0%
CATCCCTTCTAATTTCCCAT+AGG - chr4_1:20314080-20314099 None:intergenic 40.0%
!! CTTTTGAGAATCTGTCTCAG+AGG - chr4_1:20314133-20314152 None:intergenic 40.0%
AACAAAGCTTCACATCCTGA+AGG + chr4_1:20314183-20314202 Msa0539410:CDS 40.0%
AGAGCAAAGCAAAGGAATGA+TGG - chr4_1:20314575-20314594 None:intergenic 40.0%
TAGGTCTAAGAGCAAAGCAA+AGG - chr4_1:20314583-20314602 None:intergenic 40.0%
GTGAGCCATCTTATGTCATT+TGG + chr4_1:20314624-20314643 Msa0539410:intron 40.0%
! TGTCATTTGGTCCTACTATG+TGG + chr4_1:20314637-20314656 Msa0539410:intron 40.0%
AGTCATGAGAACCCATAGTT+GGG - chr4_1:20314665-20314684 None:intergenic 40.0%
! GAAGAAAGGGCATACTTATG+TGG + chr4_1:20314732-20314751 Msa0539410:intron 40.0%
TAGTGTGTTATCTCCAACTC+TGG + chr4_1:20314768-20314787 Msa0539410:intron 40.0%
AGTGTGTTATCTCCAACTCT+GGG + chr4_1:20314769-20314788 Msa0539410:intron 40.0%
TATTGTTCTCTGTAGGAGCT+CGG + chr4_1:20314866-20314885 Msa0539410:intron 40.0%
TTCTGTGAGTTGCTGTGATT+CGG + chr4_1:20314994-20315013 Msa0539410:intron 40.0%
ATGGGCATTAAGGATGATGA+TGG - chr4_1:20315228-20315247 None:intergenic 40.0%
! AGTTTTCACAGACCACCAAA+TGG + chr4_1:20315360-20315379 Msa0539410:intron 40.0%
! GTTTTCACAGACCACCAAAT+GGG + chr4_1:20315361-20315380 Msa0539410:intron 40.0%
GTCAGAGAGATTGAAACAGT+AGG + chr4_1:20315519-20315538 Msa0539410:intron 40.0%
AGGAAGTGATCCAATAACCA+AGG + chr4_1:20315724-20315743 Msa0539410:intron 40.0%
TTGTTACTGGCGCATATTTG+TGG + chr4_1:20316024-20316043 Msa0539410:intron 40.0%
AGTATGTTAGGGAACAAGAG+AGG - chr4_1:20316383-20316402 None:intergenic 40.0%
! TCTTCGGATTGATTTCCATC+AGG - chr4_1:20316479-20316498 None:intergenic 40.0%
AAACACTGATGTGCCTGTAT+CGG + chr4_1:20316553-20316572 Msa0539410:CDS 40.0%
!! TGAGCAAAGTACTGAGATGA+TGG + chr4_1:20316577-20316596 Msa0539410:CDS 40.0%
!! AAGTACTGAGATGATGGAAG+AGG + chr4_1:20316583-20316602 Msa0539410:CDS 40.0%
GGAAGAGGATGGAAATAATG+TGG + chr4_1:20316598-20316617 Msa0539410:CDS 40.0%
AGAGGATGGAAATAATGTGG+AGG + chr4_1:20316601-20316620 Msa0539410:CDS 40.0%
GTTATTCAAGAGCTTGAGAC+AGG + chr4_1:20316665-20316684 Msa0539410:CDS 40.0%
CTTGAGACAGGGAAAGAAAA+TGG + chr4_1:20316677-20316696 Msa0539410:CDS 40.0%
AATGGGAAAATTGCTGCAGT+AGG + chr4_1:20316695-20316714 Msa0539410:CDS 40.0%
ATGGGAAAATTGCTGCAGTA+GGG + chr4_1:20316696-20316715 Msa0539410:CDS 40.0%
AATTGCTGCAGTAGGGAAAA+AGG + chr4_1:20316703-20316722 Msa0539410:CDS 40.0%
TGATGCTGATCTGTAAGCAA+AGG - chr4_1:20316830-20316849 None:intergenic 40.0%
CAGATCAGCATCAATTACAC+TGG + chr4_1:20316837-20316856 Msa0539410:intron 40.0%
! CAATTACACTGGCAAGTTGA+AGG + chr4_1:20316848-20316867 Msa0539410:CDS 40.0%
! ACTGGCAAGTTGAAGGAAAA+TGG + chr4_1:20316855-20316874 Msa0539410:CDS 40.0%
! CTGGCAAGTTGAAGGAAAAT+GGG + chr4_1:20316856-20316875 Msa0539410:CDS 40.0%
! TGGCAAGTTGAAGGAAAATG+GGG + chr4_1:20316857-20316876 Msa0539410:CDS 40.0%
GTGGTGATTGAATCAAATGC+TGG + chr4_1:20316879-20316898 Msa0539410:CDS 40.0%
! ACACTTACATTGCCTTTTGC+AGG + chr4_1:20316993-20317012 Msa0539410:CDS 40.0%
! ACATTGCCTTTTGCAGGTAA+AGG + chr4_1:20316999-20317018 Msa0539410:CDS 40.0%
ACTTCTCCTTTACCTGCAAA+AGG - chr4_1:20317008-20317027 None:intergenic 40.0%
AAGGAGAAGTTATTGAGGGT+TGG + chr4_1:20317018-20317037 Msa0539410:CDS 40.0%
AGGAGAAGTTATTGAGGGTT+GGG + chr4_1:20317019-20317038 Msa0539410:CDS 40.0%
GTTATTGAGGGTTGGGATAT+TGG + chr4_1:20317026-20317045 Msa0539410:CDS 40.0%
ATCACATACGTCATTGATGG+TGG - chr4_1:20317196-20317215 None:intergenic 40.0%
! TGCATGTTTCAGGTCTAAGA+AGG + chr4_1:20317298-20317317 Msa0539410:intron 40.0%
! TGTTTCAGGTCTAAGAAGGA+CGG + chr4_1:20317302-20317321 Msa0539410:intron 40.0%
CATACCACCAAATTCATGGT+TGG + chr4_1:20317337-20317356 Msa0539410:CDS 40.0%
TTACTCCATCCAACTGATTG+TGG + chr4_1:20317392-20317411 Msa0539410:three_prime_UTR 40.0%
!! TCTCCGGGTTTAGGGTTTTT+AGG + chr4_1:20307862-20307881 Msa0539410:five_prime_UTR 45.0%
CCTCCTAAAAACCCTAAACC+CGG - chr4_1:20307868-20307887 None:intergenic 45.0%
!! GCAGGTGTTGAAATCAAACC+TGG + chr4_1:20308019-20308038 Msa0539410:intron 45.0%
! GTGTGAGTGAAAGGTTTTCC+AGG - chr4_1:20308040-20308059 None:intergenic 45.0%
TGAAATGTGAAGGCGACCTT+TGG - chr4_1:20308074-20308093 None:intergenic 45.0%
AGGTCGCCTTCACATTTCAA+TGG + chr4_1:20308075-20308094 Msa0539410:five_prime_UTR 45.0%
CTGGGATTCTGCCAAATTCA+CGG + chr4_1:20308214-20308233 Msa0539410:intron 45.0%
TGCGGTTATTATCTTTCCCG+TGG + chr4_1:20309397-20309416 Msa0539410:five_prime_UTR 45.0%
! GGAGCTTCTGAGAATAGAGT+TGG + chr4_1:20309712-20309731 Msa0539410:intron 45.0%
! GCTTCTGAGAATAGAGTTGG+GGG + chr4_1:20309715-20309734 Msa0539410:intron 45.0%
! GGGGAAGTTGATTAAGTCCA+TGG + chr4_1:20309734-20309753 Msa0539410:intron 45.0%
! GAAGTACCACTTGGTAGAGT+CGG + chr4_1:20310453-20310472 Msa0539410:five_prime_UTR 45.0%
GTAGAGTCGGATGATGATAG+CGG + chr4_1:20310466-20310485 Msa0539410:five_prime_UTR 45.0%
!! GATGATGATAGCGGTCTTGA+AGG + chr4_1:20310475-20310494 Msa0539410:five_prime_UTR 45.0%
CAGTGTGCATGTACAATCTC+AGG + chr4_1:20310516-20310535 Msa0539410:five_prime_UTR 45.0%
GGAACTGTCAACTGATCTGA+AGG - chr4_1:20310890-20310909 None:intergenic 45.0%
! TCCTGGGACGTGTTCATTTT+TGG - chr4_1:20311016-20311035 None:intergenic 45.0%
! GACAGAGAAACAGTTGATGC+TGG + chr4_1:20311067-20311086 Msa0539410:five_prime_UTR 45.0%
TTGCAGATAGTCAGACTCAC+AGG + chr4_1:20311155-20311174 Msa0539410:five_prime_UTR 45.0%
AGCTGAACCTTCTGATCACT+TGG + chr4_1:20311293-20311312 Msa0539410:five_prime_UTR 45.0%
! TGCAGCATTATCTAGTTCGG+TGG - chr4_1:20311418-20311437 None:intergenic 45.0%
! TCCTGGGCCATGTTCATTTT+TGG - chr4_1:20311450-20311469 None:intergenic 45.0%
TTCCTGATCCAAGAGATCCT+GGG - chr4_1:20311466-20311485 None:intergenic 45.0%
TTTCCTGATCCAAGAGATCC+TGG - chr4_1:20311467-20311486 None:intergenic 45.0%
GGATCTCTTGGATCAGGAAA+TGG + chr4_1:20311467-20311486 Msa0539410:five_prime_UTR 45.0%
GCCAAAAATGAACACAGACG+AGG + chr4_1:20311901-20311920 Msa0539410:exon 45.0%
CAGAGATGTGAGTCAACATG+TGG - chr4_1:20312432-20312451 None:intergenic 45.0%
!! CTATGTCACCACTTGGCTTT+TGG + chr4_1:20312468-20312487 Msa0539410:intron 45.0%
CTCACTCACTCGTTAATTCG+AGG - chr4_1:20312509-20312528 None:intergenic 45.0%
GAGTGAGTGAGAAAAGACAC+TGG + chr4_1:20312518-20312537 Msa0539410:intron 45.0%
GAGAAAAGACACTGGTGAGA+TGG + chr4_1:20312526-20312545 Msa0539410:intron 45.0%
AAAAGACACTGGTGAGATGG+TGG + chr4_1:20312529-20312548 Msa0539410:intron 45.0%
TGAAAGCCGATGCAGAACAA+AGG - chr4_1:20313170-20313189 None:intergenic 45.0%
!! TGTTCTGCATCGGCTTTCAA+AGG + chr4_1:20313171-20313190 Msa0539410:intron 45.0%
TGTTGTCTTTGGTATGAGGC+AGG + chr4_1:20313288-20313307 Msa0539410:intron 45.0%
AAAAAGGAAGGAGCGGTCAA+AGG + chr4_1:20313382-20313401 Msa0539410:CDS 45.0%
CAATGTTGTTAACCTGCCTC+AGG + chr4_1:20313439-20313458 Msa0539410:CDS 45.0%
TATATGAGGAAGGACAGCCT+AGG - chr4_1:20313668-20313687 None:intergenic 45.0%
TGAGAATCTGTCTCAGAGGA+AGG - chr4_1:20314129-20314148 None:intergenic 45.0%
CCATTTCTGTTGTCACCTTC+AGG - chr4_1:20314201-20314220 None:intergenic 45.0%
CCTGAAGGTGACAACAGAAA+TGG + chr4_1:20314198-20314217 Msa0539410:CDS 45.0%
GGTGACAACAGAAATGGAGA+AGG + chr4_1:20314204-20314223 Msa0539410:CDS 45.0%
ATAGTTGGGGTCCACATAGT+AGG - chr4_1:20314651-20314670 None:intergenic 45.0%
TACTATGTGGACCCCAACTA+TGG + chr4_1:20314650-20314669 Msa0539410:intron 45.0%
ACTATGTGGACCCCAACTAT+GGG + chr4_1:20314651-20314670 Msa0539410:intron 45.0%
GTCATGAGAACCCATAGTTG+GGG - chr4_1:20314664-20314683 None:intergenic 45.0%
GAGTCATGAGAACCCATAGT+TGG - chr4_1:20314666-20314685 None:intergenic 45.0%
! AAAGGGCATACTTATGTGGC+AGG + chr4_1:20314736-20314755 Msa0539410:intron 45.0%
! AAGGGCATACTTATGTGGCA+GGG + chr4_1:20314737-20314756 Msa0539410:intron 45.0%
ATACTTATGTGGCAGGGAGT+GGG + chr4_1:20314743-20314762 Msa0539410:intron 45.0%
GTGTGTTATCTCCAACTCTG+GGG + chr4_1:20314770-20314789 Msa0539410:intron 45.0%
AGTCAGCTATATGAGGACTG+AGG + chr4_1:20314793-20314812 Msa0539410:intron 45.0%
GTCAGCTATATGAGGACTGA+GGG + chr4_1:20314794-20314813 Msa0539410:intron 45.0%
TCAGCTATATGAGGACTGAG+GGG + chr4_1:20314795-20314814 Msa0539410:intron 45.0%
AGGGGAGAGGAAGATTATCT+GGG + chr4_1:20314813-20314832 Msa0539410:intron 45.0%
TCTGTGAGTTGCTGTGATTC+GGG + chr4_1:20314995-20315014 Msa0539410:intron 45.0%
GATGGGGTAACATAGGATGA+AGG - chr4_1:20315788-20315807 None:intergenic 45.0%
GAGTGAGAATAAGTGGCTGA+TGG - chr4_1:20315835-20315854 None:intergenic 45.0%
! ATGCGCTCCCATTTTGTTAC+TGG + chr4_1:20316011-20316030 Msa0539410:intron 45.0%
!! TTATTTCTGGTGCAGCAGTG+TGG + chr4_1:20316433-20316452 Msa0539410:intron 45.0%
GTACTTTGCTCAACCGATAC+AGG - chr4_1:20316569-20316588 None:intergenic 45.0%
!! ACTGAGATGATGGAAGAGGA+TGG + chr4_1:20316587-20316606 Msa0539410:CDS 45.0%
GACAATGTTCGAACTTGGGA+AGG - chr4_1:20316635-20316654 None:intergenic 45.0%
! CAAGTTGAAGGAAAATGGGG+TGG + chr4_1:20316860-20316879 Msa0539410:CDS 45.0%
GCTCCTTTCAAATTTCGCCT+TGG + chr4_1:20316906-20316925 Msa0539410:CDS 45.0%
!! GGTTGGGATATTGGTCTTGA+AGG + chr4_1:20317035-20317054 Msa0539410:CDS 45.0%
GGGAAATATATGGAGTCAGG+AGG + chr4_1:20317437-20317456 Msa0539410:three_prime_UTR 45.0%
GTCAGGAGGCAATCAAAATC+CGG + chr4_1:20317451-20317470 Msa0539410:three_prime_UTR 45.0%
! TGCCCCTCGTGATTCATTTT+TGG + chr4_1:20317519-20317538 Msa0539410:three_prime_UTR 45.0%
! CAACGACTCGACATGGTTTT+CGG - chr4_1:20317615-20317634 None:intergenic 45.0%
!!! TTACTTTTAAAAATAATTTA+TGG + chr4_1:20317701-20317720 Msa0539410:three_prime_UTR 5.0%
!! CCGGGTTTAGGGTTTTTAGG+AGG + chr4_1:20307865-20307884 Msa0539410:five_prime_UTR 50.0%
CACTAAAGGCCCGTTCGTTT+GGG - chr4_1:20308616-20308635 None:intergenic 50.0%
ACACTAAAGGCCCGTTCGTT+TGG - chr4_1:20308617-20308636 None:intergenic 50.0%
ACGGGCCTTTAGTGTGTGTT+TGG + chr4_1:20308622-20308641 Msa0539410:intron 50.0%
! GGAGCAGCCAGAATTGATTC+TGG - chr4_1:20308886-20308905 None:intergenic 50.0%
! GTGGCGCCATGATTTTGTTG+AGG + chr4_1:20309085-20309104 Msa0539410:intron 50.0%
!! TTTCAGGCCACTTTGGGACA+TGG + chr4_1:20309208-20309227 Msa0539410:intron 50.0%
TGCAAGGACTCAGTTTGTCC+TGG - chr4_1:20309307-20309326 None:intergenic 50.0%
CGCAGAGATGAATACTCCGA+GGG - chr4_1:20309381-20309400 None:intergenic 50.0%
! CCTCGGAGTATTCATCTCTG+CGG + chr4_1:20309379-20309398 Msa0539410:five_prime_UTR 50.0%
TAGTATTGCCATAGCGGCCA+CGG - chr4_1:20309417-20309436 None:intergenic 50.0%
TGGCCGCTATGGCAATACTA+TGG + chr4_1:20309417-20309436 Msa0539410:five_prime_UTR 50.0%
!! GCAGAGGAAGCATCTTCTGA+TGG + chr4_1:20310388-20310407 Msa0539410:intron 50.0%
!! GAGGAAGCATCTTCTGATGG+CGG + chr4_1:20310391-20310410 Msa0539410:intron 50.0%
!! GCTGAGGAAGAAGTACCACT+TGG + chr4_1:20310444-20310463 Msa0539410:five_prime_UTR 50.0%
CATCATCCGACTCTACCAAG+TGG - chr4_1:20310462-20310481 None:intergenic 50.0%
GACAGTTCCTTCCACTGTTC+CGG + chr4_1:20310901-20310920 Msa0539410:five_prime_UTR 50.0%
CTTCCACTGTTCCGGATGTT+GGG + chr4_1:20310909-20310928 Msa0539410:five_prime_UTR 50.0%
TTCCACTGTTCCGGATGTTG+GGG + chr4_1:20310910-20310929 Msa0539410:five_prime_UTR 50.0%
GCCAAAAATGAACACGTCCC+AGG + chr4_1:20311012-20311031 Msa0539410:five_prime_UTR 50.0%
GTCCCAGGATCACTTTGATC+AGG + chr4_1:20311027-20311046 Msa0539410:five_prime_UTR 50.0%
GGATCGACCAAGTGATCAGA+AGG - chr4_1:20311303-20311322 None:intergenic 50.0%
GCCAAAAATGAACATGGCCC+AGG + chr4_1:20311446-20311465 Msa0539410:five_prime_UTR 50.0%
AGCTGAACCTTCAGACCAGT+TGG + chr4_1:20311749-20311768 Msa0539410:five_prime_UTR 50.0%
CTTCCACTGTTCCGGATGTT+GGG + chr4_1:20310909-20310928 Msa0539410:five_prime_UTR 50.0%
TTCCACTGTTCCGGATGTTG+GGG + chr4_1:20310910-20310929 Msa0539410:five_prime_UTR 50.0%
CGCAGCATTATCTAGATCGG+TGG - chr4_1:20311873-20311892 None:intergenic 50.0%
GAACACAGACGAGGATCTTC+TGG + chr4_1:20311910-20311929 Msa0539410:CDS 50.0%
!! ACCACTTGGCTTTTGGCTGT+TGG + chr4_1:20312475-20312494 Msa0539410:intron 50.0%
AGGCAGGAAAGCTGAAACCA+CGG + chr4_1:20313304-20313323 Msa0539410:intron 50.0%
CCTTGACCAACCTGTGAAGA+AGG - chr4_1:20313341-20313360 None:intergenic 50.0%
!! CCTTCTTCACAGGTTGGTCA+AGG + chr4_1:20313338-20313357 Msa0539410:CDS 50.0%
!! TTCACAGGTTGGTCAAGGAC+AGG + chr4_1:20313343-20313362 Msa0539410:CDS 50.0%
TGTGTTCATTTCCCTGAGGC+AGG - chr4_1:20313454-20313473 None:intergenic 50.0%
GGACTCTGCTGTCTCTTTGT+CGG - chr4_1:20314250-20314269 None:intergenic 50.0%
AAAGAGACAGCAGAGTCCGA+TGG + chr4_1:20314252-20314271 Msa0539410:intron 50.0%
CATACTTATGTGGCAGGGAG+TGG + chr4_1:20314742-20314761 Msa0539410:intron 50.0%
TACTTATGTGGCAGGGAGTG+GGG + chr4_1:20314744-20314763 Msa0539410:intron 50.0%
! TATAGCTGACTCCCCAGAGT+TGG - chr4_1:20314784-20314803 None:intergenic 50.0%
TCTGGGGAGTCAGCTATATG+AGG + chr4_1:20314786-20314805 Msa0539410:intron 50.0%
TATATGAGGACTGAGGGGAG+AGG + chr4_1:20314800-20314819 Msa0539410:intron 50.0%
GAGGGGAGAGGAAGATTATC+TGG + chr4_1:20314812-20314831 Msa0539410:intron 50.0%
GGGGAGAGGAAGATTATCTG+GGG + chr4_1:20314814-20314833 Msa0539410:intron 50.0%
GGTGCTCAAGACAATCCTGA+TGG + chr4_1:20316461-20316480 Msa0539410:CDS 50.0%
TGATTCTCAGGCATGCGAGT+TGG + chr4_1:20317148-20317167 Msa0539410:intron 50.0%
TCCATCCAACTGATTGTGGC+TGG + chr4_1:20317396-20317415 Msa0539410:three_prime_UTR 50.0%
ACCAGCCACAATCAGTTGGA+TGG - chr4_1:20317400-20317419 None:intergenic 50.0%
CATGACCAGCCACAATCAGT+TGG - chr4_1:20317404-20317423 None:intergenic 50.0%
CGAAAACCATGTCGAGTCGT+TGG + chr4_1:20317613-20317632 Msa0539410:three_prime_UTR 50.0%
CTTTCACCAACGACTCGACA+TGG - chr4_1:20317622-20317641 None:intergenic 50.0%
! CGAGTCGTTGGTGAAAGTCA+TGG + chr4_1:20317625-20317644 Msa0539410:three_prime_UTR 50.0%
! GTCGTTGGTGAAAGTCATGG+TGG + chr4_1:20317628-20317647 Msa0539410:three_prime_UTR 50.0%
TGCAGTGCCATGTCCCAAAG+TGG - chr4_1:20309218-20309237 None:intergenic 55.0%
TTCTTTCCGTCCTTGGCCCT+CGG + chr4_1:20309362-20309381 Msa0539410:five_prime_UTR 55.0%
AATACTCCGAGGGCCAAGGA+CGG - chr4_1:20309371-20309390 None:intergenic 55.0%
GATGAATACTCCGAGGGCCA+AGG - chr4_1:20309375-20309394 None:intergenic 55.0%
CCGCAGAGATGAATACTCCG+AGG - chr4_1:20309382-20309401 None:intergenic 55.0%
TATCTTTCCCGTGGCCGCTA+TGG + chr4_1:20309406-20309425 Msa0539410:five_prime_UTR 55.0%
AGTATTGCCATAGCGGCCAC+GGG - chr4_1:20309416-20309435 None:intergenic 55.0%
! GGCGGACGAAAAAGTGCGAA+AGG + chr4_1:20310409-20310428 Msa0539410:five_prime_UTR 55.0%
GTGCGAAAGGCAGCAGAAGA+CGG + chr4_1:20310422-20310441 Msa0539410:five_prime_UTR 55.0%
CCAACATCCGGAACAGTGGA+AGG - chr4_1:20310911-20310930 None:intergenic 55.0%
CCTTCCACTGTTCCGGATGT+TGG + chr4_1:20310908-20310927 Msa0539410:five_prime_UTR 55.0%
ATCCCCAACATCCGGAACAG+TGG - chr4_1:20310915-20310934 None:intergenic 55.0%
ATACGCGCTTGCTTCCCTCT+TGG + chr4_1:20311209-20311228 Msa0539410:intron 55.0%
GGTCGATCCTTGCACTGTTC+CGG + chr4_1:20311314-20311333 Msa0539410:five_prime_UTR 55.0%
CCAACATCCGGAACAGTGCA+AGG - chr4_1:20311324-20311343 None:intergenic 55.0%
CCTTGCACTGTTCCGGATGT+TGG + chr4_1:20311321-20311340 Msa0539410:five_prime_UTR 55.0%
GAACATGGCCCAGGATCTCT+TGG + chr4_1:20311455-20311474 Msa0539410:five_prime_UTR 55.0%
! GGAACTGCCAACTGGTCTGA+AGG - chr4_1:20311759-20311778 None:intergenic 55.0%
CAGTGGAAGGAACTGCCAAC+TGG - chr4_1:20311767-20311786 None:intergenic 55.0%
GGCAGTTCCTTCCACTGTTC+CGG + chr4_1:20311770-20311789 Msa0539410:five_prime_UTR 55.0%
CCAACATCCGGAACAGTGGA+AGG - chr4_1:20310911-20310930 None:intergenic 55.0%
CCTTCCACTGTTCCGGATGT+TGG + chr4_1:20310908-20310927 Msa0539410:five_prime_UTR 55.0%
ATCCCCAACATCCGGAACAG+TGG - chr4_1:20310915-20310934 None:intergenic 55.0%
ACAGACGAGGATCTTCTGGC+AGG + chr4_1:20311914-20311933 Msa0539410:CDS 55.0%
GCCAACAGCCAAAAGCCAAG+TGG - chr4_1:20312479-20312498 None:intergenic 55.0%
! TGGTGAGATGGTGGCATGTC+TGG + chr4_1:20312538-20312557 Msa0539410:intron 55.0%
! ATGGTGGCATGTCTGGCTCA+TGG + chr4_1:20312545-20312564 Msa0539410:intron 55.0%
!! GTTTTGTGGGCGTCGTCTCT+CGG + chr4_1:20312689-20312708 Msa0539410:intron 55.0%
ACTTATGTGGCAGGGAGTGG+GGG + chr4_1:20314745-20314764 Msa0539410:intron 55.0%
TGGTGCAGCAGTGTGGACAA+TGG + chr4_1:20316440-20316459 Msa0539410:intron 55.0%
AAGGCAGCAGAAGACGGCTG+AGG + chr4_1:20310428-20310447 Msa0539410:five_prime_UTR 60.0%
GGCCCAGGATCTCTTGGATC+AGG + chr4_1:20311461-20311480 Msa0539410:five_prime_UTR 60.0%
! GTGGCATGTCTGGCTCATGG+TGG + chr4_1:20312548-20312567 Msa0539410:intron 60.0%
! GCATGTCTGGCTCATGGTGG+CGG + chr4_1:20312551-20312570 Msa0539410:intron 60.0%
TCTGTAGGAGCTCGGCTCTG+TGG + chr4_1:20314874-20314893 Msa0539410:intron 60.0%
CTGTAGGAGCTCGGCTCTGT+GGG + chr4_1:20314875-20314894 Msa0539410:intron 60.0%
! GTGGGCGTCGTCTCTCGGAT+TGG + chr4_1:20312694-20312713 Msa0539410:intron 65.0%
AGCTCGGCTCTGTGGGCCTT+AGG + chr4_1:20314882-20314901 Msa0539410:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 20307856 20317761 20307856 ID=Msa0539410;Name=Msa0539410
chr4_1 mRNA 20307856 20317761 20307856 ID=Msa0539410-mRNA-1;Parent=Msa0539410;Name=Msa0539410-mRNA-1;_AED=0.09;_eAED=0.09;_QI=1643|0.92|0.8|1|0.85|0.73|15|370|348
chr4_1 exon 20307856 20307936 20307856 ID=Msa0539410-mRNA-1:exon:5820;Parent=Msa0539410-mRNA-1
chr4_1 exon 20308023 20308096 20308023 ID=Msa0539410-mRNA-1:exon:5821;Parent=Msa0539410-mRNA-1
chr4_1 exon 20309214 20309446 20309214 ID=Msa0539410-mRNA-1:exon:5822;Parent=Msa0539410-mRNA-1
chr4_1 exon 20310158 20310294 20310158 ID=Msa0539410-mRNA-1:exon:5823;Parent=Msa0539410-mRNA-1
chr4_1 exon 20310392 20310743 20310392 ID=Msa0539410-mRNA-1:exon:5824;Parent=Msa0539410-mRNA-1
chr4_1 exon 20310877 20311176 20310877 ID=Msa0539410-mRNA-1:exon:5825;Parent=Msa0539410-mRNA-1
chr4_1 exon 20311287 20311397 20311287 ID=Msa0539410-mRNA-1:exon:5826;Parent=Msa0539410-mRNA-1
chr4_1 exon 20311421 20311610 20311421 ID=Msa0539410-mRNA-1:exon:5827;Parent=Msa0539410-mRNA-1
chr4_1 exon 20311743 20311969 20311743 ID=Msa0539410-mRNA-1:exon:5828;Parent=Msa0539410-mRNA-1
chr4_1 exon 20313310 20313495 20313310 ID=Msa0539410-mRNA-1:exon:5829;Parent=Msa0539410-mRNA-1
chr4_1 exon 20314092 20314265 20314092 ID=Msa0539410-mRNA-1:exon:5830;Parent=Msa0539410-mRNA-1
chr4_1 exon 20316448 20316724 20316448 ID=Msa0539410-mRNA-1:exon:5831;Parent=Msa0539410-mRNA-1
chr4_1 exon 20316840 20317056 20316840 ID=Msa0539410-mRNA-1:exon:5832;Parent=Msa0539410-mRNA-1
chr4_1 exon 20317158 20317206 20317158 ID=Msa0539410-mRNA-1:exon:5833;Parent=Msa0539410-mRNA-1
chr4_1 exon 20317310 20317761 20317310 ID=Msa0539410-mRNA-1:exon:5834;Parent=Msa0539410-mRNA-1
chr4_1 five_prime_UTR 20307856 20307936 20307856 ID=Msa0539410-mRNA-1:five_prime_utr;Parent=Msa0539410-mRNA-1
chr4_1 five_prime_UTR 20308023 20308096 20308023 ID=Msa0539410-mRNA-1:five_prime_utr;Parent=Msa0539410-mRNA-1
chr4_1 five_prime_UTR 20309214 20309446 20309214 ID=Msa0539410-mRNA-1:five_prime_utr;Parent=Msa0539410-mRNA-1
chr4_1 five_prime_UTR 20310158 20310294 20310158 ID=Msa0539410-mRNA-1:five_prime_utr;Parent=Msa0539410-mRNA-1
chr4_1 five_prime_UTR 20310392 20310743 20310392 ID=Msa0539410-mRNA-1:five_prime_utr;Parent=Msa0539410-mRNA-1
chr4_1 five_prime_UTR 20310877 20311176 20310877 ID=Msa0539410-mRNA-1:five_prime_utr;Parent=Msa0539410-mRNA-1
chr4_1 five_prime_UTR 20311287 20311397 20311287 ID=Msa0539410-mRNA-1:five_prime_utr;Parent=Msa0539410-mRNA-1
chr4_1 five_prime_UTR 20311421 20311610 20311421 ID=Msa0539410-mRNA-1:five_prime_utr;Parent=Msa0539410-mRNA-1
chr4_1 five_prime_UTR 20311743 20311907 20311743 ID=Msa0539410-mRNA-1:five_prime_utr;Parent=Msa0539410-mRNA-1
chr4_1 CDS 20311908 20311969 20311908 ID=Msa0539410-mRNA-1:cds;Parent=Msa0539410-mRNA-1
chr4_1 CDS 20313310 20313495 20313310 ID=Msa0539410-mRNA-1:cds;Parent=Msa0539410-mRNA-1
chr4_1 CDS 20314092 20314265 20314092 ID=Msa0539410-mRNA-1:cds;Parent=Msa0539410-mRNA-1
chr4_1 CDS 20316448 20316724 20316448 ID=Msa0539410-mRNA-1:cds;Parent=Msa0539410-mRNA-1
chr4_1 CDS 20316840 20317056 20316840 ID=Msa0539410-mRNA-1:cds;Parent=Msa0539410-mRNA-1
chr4_1 CDS 20317158 20317206 20317158 ID=Msa0539410-mRNA-1:cds;Parent=Msa0539410-mRNA-1
chr4_1 CDS 20317310 20317391 20317310 ID=Msa0539410-mRNA-1:cds;Parent=Msa0539410-mRNA-1
chr4_1 three_prime_UTR 20317392 20317761 20317392 ID=Msa0539410-mRNA-1:three_prime_utr;Parent=Msa0539410-mRNA-1
Gene Sequence

>Msa0539410

ATGAACACAGACGAGGATCTTCTGGCAGGAAATGAACAGAACCAGCAGCAACCTAATGATAAGAAAGCTGAAACCACGGATAAAATACTACCTTCTTCACAGGTTGGTCAAGGACAGGATGAAAAACCAAAGAAAAAAAGGAAGGAGCGGTCAAAGGTGACACTTTTTATTGCTGATGATGCTTGTATTAGCAATGTTGTTAACCTGCCTCAGGGAAATGAACACAGTAATCAGGACACAGTTAATGGAAGGGATGTTAAGATTGCAGACAGTGTTGCATTGCCTTCCTCTGAGACAGATTCTCAAAAGAAAACAAAGAGGAGAAAGAAAGAACAAATAAACAAAGCTTCACATCCTGAAGGTGACAACAGAAATGGAGAAGGTATCATTCAAGATTACAAAGCCGACAAAGAGACAGCAGACAGTGTGGACAATGGTGCTCAAGACAATCCTGATGGAAATCAATCCGAAGATAAGAAAGTTAAGAAAAAGAAGAAGAAAAGTAAAAGTCAGGGCAGTGAAGTCGTAAACACTGATGTGCCTGTATCGGTTGAGCAAAGTACTGAGATGATGGAAGAGGATGGAAATAATGTGGAGGATACAAAGCCTTCCCAAGTTCGAACATTGTCAAATGGACTAGTTATTCAAGAGCTTGAGACAGGGAAAGAAAATGGGAAAATTGCTGCAGTAGGGAAAAAGATCAGCATCAATTACACTGGCAAGTTGAAGGAAAATGGGGTGGTGATTGAATCAAATGCTGGCGAAGCTCCTTTCAAATTTCGCCTTGGTAACATATCACCATTTACCAGAACATTTTATTATCTGGATATGACTATTGTATACTTGGATCTTACACTTACATTGCCTTTTGCAGGTAAAGGAGAAGTTATTGAGGGTTGGGATATTGGTCTTGAAGGCATGCGAGTTGGAGAAAAGAGAAGACTTGTTGTTCCACCATCAATGACGTCTAAGAAGGACGGTGAAAGTGAAAACATACCACCAAATTCATGGTTGGTTTATGACTTTGAACTGGTTAAAGTTCATTGA
Protein sequence

>Msa0539410

MNTDEDLLAGNEQNQQQPNDKKAETTDKILPSSQVGQGQDEKPKKKRKERSKVTLFIADDACISNVVNLPQGNEHSNQDTVNGRDVKIADSVALPSSETDSQKKTKRRKKEQINKASHPEGDNRNGEGIIQDYKADKETADSVDNGAQDNPDGNQSEDKKVKKKKKKSKSQGSEVVNTDVPVSVEQSTEMMEEDGNNVEDTKPSQVRTLSNGLVIQELETGKENGKIAAVGKKISINYTGKLKENGVVIESNAGEAPFKFRLGNISPFTRTFYYLDMTIVYLDLTLTLPFAGKGEVIEGWDIGLEGMRVGEKRRLVVPPSMTSKKDGESENIPPNSWLVYDFELVKVH*