AlfalfaGEDB | Msa0080050

M. sativa cultivar zhongmu-4 / Msa0080050

KEGG: K21773
GO: -
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0080050	sp\|Q6A332\|ALY3_ARATH	42.343	1195	551	27	1	1120	1	1132	0.0	781

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0080050	A0A072VML3	97.418	1123	25	2	1	1120	1	1122	0.0	2264

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TFs/TRs:

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Gene ID	Type	Classification
Msa0080050	TF	MYB-related

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003220	Msa0080050	0.831879	1.299711e-55	-8.615850e-47
Msa0003270	Msa0080050	0.811927	5.481402e-51	-8.615850e-47
Msa0031180	Msa0080050	0.815702	8.072585e-52	-8.615850e-47
Msa0032900	Msa0080050	0.983822	8.345447e-159	-8.615850e-47
Msa0032940	Msa0080050	0.983604	3.362039e-158	-8.615850e-47
Msa0045340	Msa0080050	0.802311	5.958808e-49	-8.615850e-47
Msa0054820	Msa0080050	0.806404	8.363415e-50	-8.615850e-47
Msa0055600	Msa0080050	0.824060	9.902458e-54	-8.615850e-47
Msa0055660	Msa0080050	0.802051	6.738954e-49	-8.615850e-47
Msa0061040	Msa0080050	0.805168	1.520311e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0080050	MtrunA17_Chr1g0191931	97.418	1123	25	2	1	1120	1	1122	0.0	2264
Msa0080050	MtrunA17_Chr4g0066971	43.647	1212	542	34	1	1120	1	1163	0.0	782

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0080050	AT3G21430.4	42.628	1187	555	26	1	1120	1	1128	0.0	782
Msa0080050	AT3G21430.3	42.628	1187	555	26	1	1120	1	1128	0.0	782
Msa0080050	AT3G21430.2	42.343	1195	551	27	1	1120	1	1132	0.0	781
Msa0080050	AT3G05380.4	46.659	913	395	24	1	852	1	882	0.0	663
Msa0080050	AT3G05380.4	53.179	173	73	4	949	1120	887	1052	2.39e-44	175
Msa0080050	AT3G05380.2	46.659	913	395	24	1	852	1	882	0.0	663
Msa0080050	AT3G05380.2	53.179	173	73	4	949	1120	887	1052	2.39e-44	175
Msa0080050	AT3G05380.5	46.659	913	395	24	1	852	1	882	0.0	663
Msa0080050	AT3G05380.5	53.179	173	73	4	949	1120	887	1052	2.39e-44	175
Msa0080050	AT3G05380.1	46.440	913	396	25	1	852	1	881	0.0	662

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Find 277 sgRNAs with CRISPR-Local

Find 800 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAGAGAGATTCATGA+TGG	0.598180	1_2:+58257298	Msa0080050:CDS
AAAACCTGCGTGGTTTGCCA+AGG	0.555120	1_2:-58257117	None:intergenic
AAAATTACAGATTAAGTAAG+GGG	0.558954	1_2:-58260925	None:intergenic
AAACCTGCGTGGTTTGCCAA+GGG	0.605604	1_2:-58257116	None:intergenic
AAAGAAAGAGTGGAAAATGT+TGG	0.469922	1_2:+58254074	Msa0080050:CDS
AAAGACGGTCAAACCTTCTG+AGG	0.581676	1_2:+58256507	Msa0080050:CDS
AAAGATGCTATTACGAAGAT+TGG	0.351072	1_2:+58260129	Msa0080050:CDS
AAAGCGTGCTCTAGATAAAA+AGG	0.313137	1_2:+58259050	Msa0080050:CDS
AAATAAAGTTAAAATTCGTG+CGG	0.700583	1_2:+58255431	Msa0080050:CDS
AAATGCTAATAATGGCATAT+TGG	0.389348	1_2:+58259354	Msa0080050:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACGAAGAAAATTGTTGAATC+TGG	+	chr1_2:58250182-58250201	Msa0080050:intron	30.0%
TGTAATTAACATGAAGGCTT+AGG	-	chr1_2:58250709-58250728	None:intergenic	30.0%
TCAGTATACTAAAGGATCAA+TGG	+	chr1_2:58250845-58250864	Msa0080050:intron	30.0%
TTTCGAAACATGAAGTAACA+TGG	+	chr1_2:58250996-58251015	Msa0080050:intron	30.0%
ATTGATGTCAGTATTAGTGT+AGG	+	chr1_2:58251111-58251130	Msa0080050:intron	30.0%
TTCCTCTCTCAAAACATAAA+TGG	-	chr1_2:58251332-58251351	None:intergenic	30.0%
TTCATAGCCAATAGAAATAC+AGG	-	chr1_2:58251482-58251501	None:intergenic	30.0%
CAATTAATATGCATGATGCA+TGG	-	chr1_2:58251537-58251556	None:intergenic	30.0%
TCAAAATGTGAGGTTTAAAC+AGG	-	chr1_2:58251603-58251622	None:intergenic	30.0%
ACGTAATAGATCCATTGAAA+TGG	+	chr1_2:58251917-58251936	Msa0080050:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_2	gene	58249472	58261265	58249472	ID=Msa0080050;Name=Msa0080050
chr1_2	mRNA	58249472	58261265	58249472	ID=Msa0080050-mRNA-1;Parent=Msa0080050;Name=Msa0080050-mRNA-1;_AED=0.08;_eAED=0.08;_QI=178\|1\|1\|1\|0.94\|0.94\|19\|420\|1120
chr1_2	exon	58249472	58249634	58249472	ID=Msa0080050-mRNA-1:exon:18570;Parent=Msa0080050-mRNA-1
chr1_2	exon	58250849	58250968	58250849	ID=Msa0080050-mRNA-1:exon:18571;Parent=Msa0080050-mRNA-1
chr1_2	exon	58251641	58251739	58251641	ID=Msa0080050-mRNA-1:exon:18572;Parent=Msa0080050-mRNA-1
chr1_2	exon	58251903	58251965	58251903	ID=Msa0080050-mRNA-1:exon:18573;Parent=Msa0080050-mRNA-1
chr1_2	exon	58252219	58252296	58252219	ID=Msa0080050-mRNA-1:exon:18574;Parent=Msa0080050-mRNA-1
chr1_2	exon	58252667	58252835	58252667	ID=Msa0080050-mRNA-1:exon:18575;Parent=Msa0080050-mRNA-1
chr1_2	exon	58253464	58253723	58253464	ID=Msa0080050-mRNA-1:exon:18576;Parent=Msa0080050-mRNA-1
chr1_2	exon	58253888	58254287	58253888	ID=Msa0080050-mRNA-1:exon:18577;Parent=Msa0080050-mRNA-1
chr1_2	exon	58254418	58254495	58254418	ID=Msa0080050-mRNA-1:exon:18578;Parent=Msa0080050-mRNA-1
chr1_2	exon	58255340	58255587	58255340	ID=Msa0080050-mRNA-1:exon:18579;Parent=Msa0080050-mRNA-1
chr1_2	exon	58256433	58256717	58256433	ID=Msa0080050-mRNA-1:exon:18580;Parent=Msa0080050-mRNA-1
chr1_2	exon	58256824	58257002	58256824	ID=Msa0080050-mRNA-1:exon:18581;Parent=Msa0080050-mRNA-1
chr1_2	exon	58257114	58257396	58257114	ID=Msa0080050-mRNA-1:exon:18582;Parent=Msa0080050-mRNA-1
chr1_2	exon	58257944	58258099	58257944	ID=Msa0080050-mRNA-1:exon:18583;Parent=Msa0080050-mRNA-1
chr1_2	exon	58258922	58259071	58258922	ID=Msa0080050-mRNA-1:exon:18584;Parent=Msa0080050-mRNA-1
chr1_2	exon	58259331	58259471	58259331	ID=Msa0080050-mRNA-1:exon:18585;Parent=Msa0080050-mRNA-1
chr1_2	exon	58259557	58259769	58259557	ID=Msa0080050-mRNA-1:exon:18586;Parent=Msa0080050-mRNA-1
chr1_2	exon	58260102	58260392	58260102	ID=Msa0080050-mRNA-1:exon:18587;Parent=Msa0080050-mRNA-1
chr1_2	exon	58260681	58261265	58260681	ID=Msa0080050-mRNA-1:exon:18588;Parent=Msa0080050-mRNA-1
chr1_2	five_prime_UTR	58249472	58249634	58249472	ID=Msa0080050-mRNA-1:five_prime_utr;Parent=Msa0080050-mRNA-1
chr1_2	five_prime_UTR	58250849	58250863	58250849	ID=Msa0080050-mRNA-1:five_prime_utr;Parent=Msa0080050-mRNA-1
chr1_2	CDS	58250864	58250968	58250864	ID=Msa0080050-mRNA-1:cds;Parent=Msa0080050-mRNA-1
chr1_2	CDS	58251641	58251739	58251641	ID=Msa0080050-mRNA-1:cds;Parent=Msa0080050-mRNA-1
chr1_2	CDS	58251903	58251965	58251903	ID=Msa0080050-mRNA-1:cds;Parent=Msa0080050-mRNA-1
chr1_2	CDS	58252219	58252296	58252219	ID=Msa0080050-mRNA-1:cds;Parent=Msa0080050-mRNA-1
chr1_2	CDS	58252667	58252835	58252667	ID=Msa0080050-mRNA-1:cds;Parent=Msa0080050-mRNA-1
chr1_2	CDS	58253464	58253723	58253464	ID=Msa0080050-mRNA-1:cds;Parent=Msa0080050-mRNA-1
chr1_2	CDS	58253888	58254287	58253888	ID=Msa0080050-mRNA-1:cds;Parent=Msa0080050-mRNA-1
chr1_2	CDS	58254418	58254495	58254418	ID=Msa0080050-mRNA-1:cds;Parent=Msa0080050-mRNA-1
chr1_2	CDS	58255340	58255587	58255340	ID=Msa0080050-mRNA-1:cds;Parent=Msa0080050-mRNA-1
chr1_2	CDS	58256433	58256717	58256433	ID=Msa0080050-mRNA-1:cds;Parent=Msa0080050-mRNA-1
chr1_2	CDS	58256824	58257002	58256824	ID=Msa0080050-mRNA-1:cds;Parent=Msa0080050-mRNA-1
chr1_2	CDS	58257114	58257396	58257114	ID=Msa0080050-mRNA-1:cds;Parent=Msa0080050-mRNA-1
chr1_2	CDS	58257944	58258099	58257944	ID=Msa0080050-mRNA-1:cds;Parent=Msa0080050-mRNA-1
chr1_2	CDS	58258922	58259071	58258922	ID=Msa0080050-mRNA-1:cds;Parent=Msa0080050-mRNA-1
chr1_2	CDS	58259331	58259471	58259331	ID=Msa0080050-mRNA-1:cds;Parent=Msa0080050-mRNA-1
chr1_2	CDS	58259557	58259769	58259557	ID=Msa0080050-mRNA-1:cds;Parent=Msa0080050-mRNA-1
chr1_2	CDS	58260102	58260392	58260102	ID=Msa0080050-mRNA-1:cds;Parent=Msa0080050-mRNA-1
chr1_2	CDS	58260681	58260845	58260681	ID=Msa0080050-mRNA-1:cds;Parent=Msa0080050-mRNA-1
chr1_2	three_prime_UTR	58260846	58261265	58260846	ID=Msa0080050-mRNA-1:three_prime_utr;Parent=Msa0080050-mRNA-1

Gene Sequence

>Msa0080050

ATGGCACCGACAAGGAAATCTAGAAGTGTGAATAAGCGGTTTAAAAATACAAATGATATTTCTCCTGAGAAAGATGGAGCTGGCTCAAGTAAAAACAAGCAACGGAAGAAGAAGTTGTCTAATAAATTGGGATCTCAGTGGAGCAAGGGGGAACTAGAGCGATTCTATGAAGCATACAGAAAGCATGGTAAAGATTGGAAGAAGGTGGCTGCCGCTGTACGTAATAGATCCATTGAAATGGTGGAAGCTCTTTACAATATGAATCGGGCATATCTATCTCTACCAGAGGGGACAGCTTCTGTTGTAGGCCTCATTGCAATGATGACAGATCATTATAATGTCCTGGAAGAGAGTGATAGTGAAAGGGAGAGCAATGATGCACCAGGATCTCGAAAACCTGTGAAACGAAAGCGTGAAAAACTTCAGCTTAATGTCTCAAAGGATCCTGTCCAGTCTCAGTCTGTTACTTCCAGTGATGGTTGCCTCTCTCTACTGAAGAAAAGACGCATTGATGGTCTGCAGCCTCGTGCTGTTGGAAAAAGGACACCACGAGTCCCAGTTTACCACTCTCAAAAGAAAGATGATAGGGAGAATTATGTTTCGCCTAACAAAAGAAGCTTGAAGTCTACTGTTGATGGTAATGATGACGAAGTTGAACATGTAGCTTTTGCATTAAGCAGGGCTTCACAAAGAGGAGGCTCTCCCCTAGTTTCTCAGACACCACATAGGAGAGGAGAACAGAAGTTCTCTCCTGCTCAGAGCCGGGATAGAATGCGCCAAATGTCAGAGACAGCTCGTGCCAAGTTTCTCGATGCTTCTGTGGATGGAGAGTTTTTGGAAGGTAGTCTTGAAAGCAGGGGAGCTGAAAATGGAGAATATGTTAGAGATACTAGTTCCTTGATGGATATGGAAGGAACGAGCACTGCTGGAGTTCCTAAGGGAGGAAAATTTTACAGAAAGAAAGAAAGAGTGGAAAATGTTGGAAATTATCAGCTTGATGACGGAGGAGAAGCATGCAGCGGCACTGAAGAAGGACTAAGTTTTAATTCTTTGAAGGAAAATAATATGGAGGTAACTAACGAAAAGCTTGAGCAATTCTCCCCAACAAGTCAGCGGAAAAGAAACAAAAAACTCCTCTTTGGAGGTAATTCTGTCAATAGGGATGTCTTTGGAGATGAAATCCACGCCTTGGATGCTTTGCAAACTTTGGCCGATCTATCTCTAATGATGCCGTCTTCTGAAGTAGAATCTGAATCACGTCTCCAGTTGAAGGGAGAAAGAATGATGGTTGATAAAGATGATAAGTCTGCTTTACCCGAATCAACATCAACAAGCCATAGGAGAAATAAAGTTAAAATTCGTGCGGTCGACACTTCAACGTCCAAAAAATCTAAACTCAAGGATATAGCAAATGATACCAATGCTCTCTCTGAATCAAAAGAACAGCTTCCATTTGCTGATAAGATATGGAAGAGAAAGCAAAAGTCCACTGTGTCAAAGGCTGTAGATGATGAGAAAAAAACGGTGATTAAAGGAAAATACACCGATCAAGTTTTTGCCTCACCAAAACAAATAAAGACGGTCAAACCTTCTGAGGTTTTACTGCGTGCTGATCAGAAAGGTTTAGCAGTATCAACTTCTGAAATTCCACTTTTAAGTGAAGTTAGTTCACCAACTAAACAAAGAAGTAGACGCAAGATGATTTTTCAGAGACCATCCATGCGTAAAGAGAAGTCTTATGAGAATGTATTGAAAAGTCAACCTAATAAGCACTCTACCCAAAAGGAAAAGCTTTCTAGCTGTTTGTCATCTTATTTGGTTCGCAGATGGTTTACTTTTGAATGGTTTTATAGTGCACTTGATTATCCATGGTTTGCCAAAAGAGAATTTGTGGAGTACTTAAATCATGTTGGACTAGGGAATATCCCAAGGCTAACTCGTGTTGAGTGGAGTGTCATAAAAAGTTCCCTTGGCAAACCACGCAGGTTTTCGGAACACTTTTTACATGAAGAAAGACAAAAACTTGAACAGTATCGAGAATCAGTGAGGAAACATTATTCTGAGCTGCGGACTGGTATAAGAGATGGACTTCCAACAGATTTGGCAAGACCATTATATGTTGGACAACGTGTAATTGCCATTCACCCCAAAACAAGAGAGATTCATGATGGTAGCGTGCTTACAGTTGACCATGACAAGTGCAGAATTCAGTTCGATCGTCCCCAGTTAGGAGTTGAATTCATCACGGACATTGATTGCATGCCTTTGAATCCATTAGATAATATGCCCGAAGCTTTGAGGAGGCAGATTGGTGCCAGAAAAGCCTCTTTTACGAGTATAGAACCACATATTAATGGAAATTCAAGTTTTGGGGGATGTGAAATGCATGCTTCACCTGTGAAGGTGGATGCTAACCATGTCACTTCCCAGGCCAATATTGGTAACCTCTGTGCTCAAGCTGCCTCTGCTCAACCGTGTAAAGTGATGCAACATCAATCTAAAGAAGCTGATATACATGCACTTTCTGAATTAAAGCGTGCTCTAGATAAAAAGGATACACTATTAGCAGAGCTTCGAAATGCTAATAATGGCATATTGGAAAACCAAAATGGCATAGAATGTTTAAAAGATTCTGAAGGTTTCAAGAAGCATTATGCCACGGTACTTGTAGAGCTAAAGGAAGCCAGTGGACAGGTTTCTGATACCATGCTTCAATTGAGGCAACGCAATACCTATACGGAAACCTCTCTGCCACCATGGATGAAGCCCAAAGCAAATTTTGATGGCCATGATGACCTTCCTAGTATGTCGGATAGTTCTATGACACAAGAGTCTAGGTCAACTGTCATTGAAATCATTAAAGGATCCAGGCTACAGGCACATGCAATGCTGGATGCTGCATTTCAGGCATGGTCTCAAGCTACAAAGGAAGGTAAAGATGCTATTACGAAGATTGGGCAGGCATTGGATTCTATTGATTATCAGCAGTTGTCCACCAAGTACAGGTTGCCTGTGATAAGGTCTCAAGATCAAGTGAATGGCAGTTATTATCATGCTAATCAGTCGACTTGCAGAGCATCAGAGCCTTTACTTAACGATGCATCTGGTCCGAAACTGCACAAAGATTCTGACGAAGTTGAGATTGAAATACCATTTGAGCTCATCACTTCATGTGTGGCTACATTAACCATGATTCAGAGTTGTACTGAACGGCAATACCCTCCAGCTGATGTGGCTCAGATATTAGATTCTGCCGTTACCAGCCTGCAACCGTGCGATACTCGAAACCTTCCTATTTACAGAGAAATTCAAATGTGCATGGGAAGAATAAAGACCCAGATTTTAGCTCTCATCCCTACTTAG

Protein sequence

>Msa0080050

MAPTRKSRSVNKRFKNTNDISPEKDGAGSSKNKQRKKKLSNKLGSQWSKGELERFYEAYRKHGKDWKKVAAAVRNRSIEMVEALYNMNRAYLSLPEGTASVVGLIAMMTDHYNVLEESDSERESNDAPGSRKPVKRKREKLQLNVSKDPVQSQSVTSSDGCLSLLKKRRIDGLQPRAVGKRTPRVPVYHSQKKDDRENYVSPNKRSLKSTVDGNDDEVEHVAFALSRASQRGGSPLVSQTPHRRGEQKFSPAQSRDRMRQMSETARAKFLDASVDGEFLEGSLESRGAENGEYVRDTSSLMDMEGTSTAGVPKGGKFYRKKERVENVGNYQLDDGGEACSGTEEGLSFNSLKENNMEVTNEKLEQFSPTSQRKRNKKLLFGGNSVNRDVFGDEIHALDALQTLADLSLMMPSSEVESESRLQLKGERMMVDKDDKSALPESTSTSHRRNKVKIRAVDTSTSKKSKLKDIANDTNALSESKEQLPFADKIWKRKQKSTVSKAVDDEKKTVIKGKYTDQVFASPKQIKTVKPSEVLLRADQKGLAVSTSEIPLLSEVSSPTKQRSRRKMIFQRPSMRKEKSYENVLKSQPNKHSTQKEKLSSCLSSYLVRRWFTFEWFYSALDYPWFAKREFVEYLNHVGLGNIPRLTRVEWSVIKSSLGKPRRFSEHFLHEERQKLEQYRESVRKHYSELRTGIRDGLPTDLARPLYVGQRVIAIHPKTREIHDGSVLTVDHDKCRIQFDRPQLGVEFITDIDCMPLNPLDNMPEALRRQIGARKASFTSIEPHINGNSSFGGCEMHASPVKVDANHVTSQANIGNLCAQAASAQPCKVMQHQSKEADIHALSELKRALDKKDTLLAELRNANNGILENQNGIECLKDSEGFKKHYATVLVELKEASGQVSDTMLQLRQRNTYTETSLPPWMKPKANFDGHDDLPSMSDSSMTQESRSTVIEIIKGSRLQAHAMLDAAFQAWSQATKEGKDAITKIGQALDSIDYQQLSTKYRLPVIRSQDQVNGSYYHANQSTCRASEPLLNDASGPKLHKDSDEVEIEIPFELITSCVATLTMIQSCTERQYPPADVAQILDSAVTSLQPCDTRNLPIYREIQMCMGRIKTQILALIPT*