Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0089660 | XP_003592540.2 | 60.479 | 167 | 31 | 4 | 24 | 158 | 155 | 318 | 5.36e-53 | 186 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0089660 | sp|Q9C9A2|PP112_ARATH | 36.585 | 164 | 70 | 4 | 26 | 158 | 163 | 323 | 4.54e-26 | 106 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0089660 | G7IAS0 | 60.479 | 167 | 31 | 4 | 24 | 158 | 155 | 318 | 2.56e-53 | 186 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004920 | Msa0089660 | 0.802801 | 4.722492e-49 | -8.615850e-47 |
| Msa0013050 | Msa0089660 | -0.828040 | 1.121318e-54 | -8.615850e-47 |
| Msa0040450 | Msa0089660 | 0.810619 | 1.053494e-50 | -8.615850e-47 |
| Msa0058300 | Msa0089660 | 0.806168 | 9.375461e-50 | -8.615850e-47 |
| Msa0081930 | Msa0089660 | 0.812480 | 4.151760e-51 | -8.615850e-47 |
| Msa0085360 | Msa0089660 | -0.805050 | 1.609177e-49 | -8.615850e-47 |
| Msa0089660 | Msa0136070 | 0.811012 | 8.660052e-51 | -8.615850e-47 |
| Msa0089660 | Msa0160550 | 0.803942 | 2.739489e-49 | -8.615850e-47 |
| Msa0089660 | Msa0178590 | 0.830318 | 3.142332e-55 | -8.615850e-47 |
| Msa0089660 | Msa0178640 | 0.821893 | 3.168900e-53 | -8.615850e-47 |
| Msa0089660 | Msa0222620 | 0.806990 | 6.289149e-50 | -8.615850e-47 |
| Msa0089660 | Msa0262310 | 0.801935 | 7.119064e-49 | -8.615850e-47 |
| Msa0089660 | Msa0264330 | 0.805005 | 1.644693e-49 | -8.615850e-47 |
| Msa0089660 | Msa0284410 | 0.803873 | 2.832385e-49 | -8.615850e-47 |
| Msa0089660 | Msa0306710 | 0.809315 | 2.010686e-50 | -8.615850e-47 |
| Msa0089660 | Msa0309770 | 0.834114 | 3.613511e-56 | -8.615850e-47 |
| Msa0089660 | Msa0317250 | 0.805306 | 1.422517e-49 | -8.615850e-47 |
| Msa0089660 | Msa0383500 | 0.803080 | 4.134544e-49 | -8.615850e-47 |
| Msa0089660 | Msa0433640 | 0.807341 | 5.299920e-50 | -8.615850e-47 |
| Msa0089660 | Msa0521500 | 0.807847 | 4.138556e-50 | -8.615850e-47 |
| Msa0089660 | Msa0610430 | 0.802902 | 4.501207e-49 | -8.615850e-47 |
| Msa0089660 | Msa0621490 | 0.810579 | 1.074796e-50 | -8.615850e-47 |
| Msa0089660 | Msa0643560 | 0.810092 | 1.368627e-50 | -8.615850e-47 |
| Msa0089660 | Msa0657970 | 0.804722 | 1.884807e-49 | -8.615850e-47 |
| Msa0089660 | Msa0716840 | 0.800839 | 1.193623e-48 | -8.615850e-47 |
| Msa0089660 | Msa0743950 | 0.834928 | 2.256366e-56 | -8.615850e-47 |
| Msa0089660 | Msa0756630 | -0.800620 | 1.323305e-48 | -8.615850e-47 |
| Msa0089660 | Msa0769920 | 0.823266 | 1.519516e-53 | -8.615850e-47 |
| Msa0089660 | Msa0778320 | 0.804753 | 1.856397e-49 | -8.615850e-47 |
| Msa0089660 | Msa0824680 | 0.814583 | 1.431262e-51 | -8.615850e-47 |
| Msa0089660 | Msa0850960 | 0.801774 | 7.681998e-49 | -8.615850e-47 |
| Msa0089660 | Msa0864250 | 0.829443 | 5.132358e-55 | -8.615850e-47 |
| Msa0089660 | Msa0909000 | -0.802256 | 6.117056e-49 | -8.615850e-47 |
| Msa0089660 | Msa1009820 | 0.803894 | 2.803970e-49 | -8.615850e-47 |
| Msa0089660 | Msa1051200 | 0.817213 | 3.704610e-52 | -8.615850e-47 |
| Msa0089660 | Msa1082500 | 0.806544 | 7.813778e-50 | -8.615850e-47 |
| Msa0089660 | Msa1137700 | 0.808983 | 2.368990e-50 | -8.615850e-47 |
| Msa0089660 | Msa1171870 | 0.816126 | 6.494139e-52 | -8.615850e-47 |
| Msa0089660 | Msa1203250 | 0.801090 | 1.061095e-48 | -8.615850e-47 |
| Msa0089660 | Msa1306430 | 0.820293 | 7.404128e-53 | -8.615850e-47 |
| Msa0089660 | Msa1348490 | 0.811022 | 8.617274e-51 | -8.615850e-47 |
| Msa0089660 | Msa1389800 | 0.804779 | 1.833595e-49 | -8.615850e-47 |
| Msa0089660 | Msa1410100 | 0.807448 | 5.029684e-50 | -8.615850e-47 |
| Msa0089660 | Msa1426030 | 0.808460 | 3.064219e-50 | -8.615850e-47 |
| Msa0089660 | Msa1442700 | 0.806293 | 8.823756e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0089660 | MtrunA17_Chr1g0208371 | 60.479 | 167 | 31 | 4 | 24 | 158 | 155 | 318 | 4.93e-57 | 186 |
| Msa0089660 | MtrunA17_Chr3g0125131 | 27.957 | 186 | 103 | 4 | 24 | 178 | 130 | 315 | 1.70e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0089660 | AT1G71060.1 | 36.585 | 164 | 70 | 4 | 26 | 158 | 163 | 323 | 4.61e-27 | 106 |
| Msa0089660 | AT1G77360.2 | 31.183 | 186 | 97 | 6 | 24 | 178 | 131 | 316 | 8.93e-17 | 77.4 |
| Msa0089660 | AT1G77360.1 | 31.183 | 186 | 97 | 6 | 24 | 178 | 167 | 352 | 1.12e-16 | 77.0 |
Find 41 sgRNAs with CRISPR-Local
Find 234 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCTTGCTCTGGGTAATT+TGG | 0.193714 | 1_2:+71262545 | None:intergenic |
| TGGATTGAAGCCTCAAATAT+TGG | 0.265159 | 1_2:-71262434 | Msa0089660:CDS |
| ATATATTGTACTTTGATTAC+TGG | 0.275088 | 1_2:-71262110 | Msa0089660:CDS |
| CAAAGGCATTTCAGCATGTT+AGG | 0.300979 | 1_2:-71263982 | None:intergenic |
| TGAAGGTTAATGAAGTTTGT+AGG | 0.377403 | 1_2:-71262272 | Msa0089660:CDS |
| CAAAATACTCAAGGTAGTAT+AGG | 0.392578 | 1_2:+71262326 | None:intergenic |
| AAGTGTCACCATTCTTGCTC+TGG | 0.406945 | 1_2:+71262536 | None:intergenic |
| CATTTAGCTTCTAACACTGT+TGG | 0.415082 | 1_2:-71262592 | Msa0089660:intron |
| TGAGCCTGACGCGGTTACTA+TGG | 0.420376 | 1_2:-71262229 | Msa0089660:intron |
| TGTACTTTGATTACTGGTCT+TGG | 0.428132 | 1_2:-71262104 | Msa0089660:CDS |
| TGTAGGGAGATGAAGGATGA+TGG | 0.433447 | 1_2:-71262255 | Msa0089660:CDS |
| TTGATTACTGGTCTTGGTAA+TGG | 0.438096 | 1_2:-71262098 | Msa0089660:CDS |
| ATTTAGCTTCTAACACTGTT+GGG | 0.450437 | 1_2:-71262591 | Msa0089660:intron |
| TGAAGTTTGTAGGGAGATGA+AGG | 0.454618 | 1_2:-71262262 | Msa0089660:CDS |
| ATCCTCTCAAACGTCTTCAA+TGG | 0.456070 | 1_2:+71262466 | None:intergenic |
| GAAGGTTAATGAAGTTTGTA+GGG | 0.457183 | 1_2:-71262271 | Msa0089660:CDS |
| ATTGAAGACGTTTGAGAGGA+TGG | 0.458694 | 1_2:-71262464 | Msa0089660:CDS |
| CCAACAGCAAAATTTGTTGA+AGG | 0.458928 | 1_2:-71262289 | Msa0089660:CDS |
| CAAATTACCCAGAGCAAGAA+TGG | 0.474736 | 1_2:-71262544 | Msa0089660:CDS |
| TTGGTAAAATCCAATATTTG+AGG | 0.488016 | 1_2:+71262424 | None:intergenic |
| TATACCATAGTAACCGCGTC+AGG | 0.499602 | 1_2:+71262225 | None:intergenic |
| CACATATCGCCGAGCAATGA+GGG | 0.514604 | 1_2:+71262510 | None:intergenic |
| CACTGTTGGGACATTGCAAA+GGG | 0.516775 | 1_2:-71262578 | Msa0089660:CDS |
| GGTAGTATAGGACTTAAGAT+AGG | 0.519609 | 1_2:+71262338 | None:intergenic |
| TTTATCATGAGATACAATCA+AGG | 0.522069 | 1_2:-71262154 | Msa0089660:intron |
| GCTATGCAAAATGAAGAAGA+AGG | 0.531029 | 1_2:-71262059 | Msa0089660:CDS |
| GCACGAAACATTGATTACCT+TGG | 0.533765 | 1_2:+71262405 | None:intergenic |
| TGTGAGAGATAAGATTATCA+AGG | 0.555970 | 1_2:-71262491 | Msa0089660:CDS |
| AGTGTCACCATTCTTGCTCT+GGG | 0.556388 | 1_2:+71262537 | None:intergenic |
| AACCATTGAAGACGTTTGAG+AGG | 0.577335 | 1_2:-71262468 | Msa0089660:CDS |
| TTGCTCTGGGTAATTTGGCG+AGG | 0.583601 | 1_2:+71262550 | None:intergenic |
| CTATGCAAAATGAAGAAGAA+GGG | 0.588304 | 1_2:-71262058 | Msa0089660:CDS |
| AAATGAAGAAGAAGGGGCAA+AGG | 0.592568 | 1_2:-71262051 | Msa0089660:CDS |
| ACACTGTTGGGACATTGCAA+AGG | 0.594567 | 1_2:-71262579 | Msa0089660:CDS |
| TCACATATCGCCGAGCAATG+AGG | 0.598991 | 1_2:+71262509 | None:intergenic |
| GTACAATATATATGAAGACT+AGG | 0.609451 | 1_2:+71262122 | None:intergenic |
| AGGCATTTCAGCATGTTAGG+AGG | 0.609819 | 1_2:-71263979 | None:intergenic |
| TCTTGGTAATGGTAGTCGAA+TGG | 0.610381 | 1_2:-71262087 | Msa0089660:CDS |
| TATGCAAAATGAAGAAGAAG+GGG | 0.633838 | 1_2:-71262057 | Msa0089660:CDS |
| GATAAAGCACAAGAACTGAT+CGG | 0.649312 | 1_2:-71262363 | Msa0089660:CDS |
| ACATTCTAACAAAATACTCA+AGG | 0.651469 | 1_2:+71262317 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAGAATAGATTAATTTA+TGG | - | chr1_2:71262325-71262344 | Msa0089660:CDS | 10.0% |
| !! | AAAAAAAAAAAAAAACATGT+TGG | + | chr1_2:71262650-71262669 | None:intergenic | 10.0% |
| !! | AATTAGAATAGATTAATTTA+TGG | - | chr1_2:71262325-71262344 | Msa0089660:CDS | 10.0% |
| !! | AAAAAAAAAAAAAAACATGT+TGG | + | chr1_2:71262650-71262669 | None:intergenic | 10.0% |
| !! | ATTCAAAATATGTGAATATA+TGG | + | chr1_2:71263013-71263032 | None:intergenic | 15.0% |
| !! | ATTCAAAATATGTGAATATA+TGG | + | chr1_2:71263013-71263032 | None:intergenic | 15.0% |
| !! | TTATCACTTGTATTTGTAAT+TGG | - | chr1_2:71262388-71262407 | Msa0089660:intron | 20.0% |
| !! | TATCACTTGTATTTGTAATT+GGG | - | chr1_2:71262389-71262408 | Msa0089660:intron | 20.0% |
| !! | TATTTGTAATTGGGATAAAT+TGG | - | chr1_2:71262398-71262417 | Msa0089660:intron | 20.0% |
| !! | ATTTGTAATTGGGATAAATT+GGG | - | chr1_2:71262399-71262418 | Msa0089660:intron | 20.0% |
| !! | AAATTAGCTATTTATGTCAA+GGG | + | chr1_2:71262469-71262488 | None:intergenic | 20.0% |
| !! | TGACATAGTATAAGAAATTA+TGG | + | chr1_2:71262770-71262789 | None:intergenic | 20.0% |
| !!! | ATTATTAGACTTATTTTCGA+TGG | - | chr1_2:71262952-71262971 | Msa0089660:intron | 20.0% |
| !! | ATATGTGAATATATGGAAAA+TGG | + | chr1_2:71263006-71263025 | None:intergenic | 20.0% |
| !! | ATATATTGTACTTTGATTAC+TGG | - | chr1_2:71263867-71263886 | Msa0089660:intron | 20.0% |
| !! | TTATCACTTGTATTTGTAAT+TGG | - | chr1_2:71262388-71262407 | Msa0089660:intron | 20.0% |
| !! | TATCACTTGTATTTGTAATT+GGG | - | chr1_2:71262389-71262408 | Msa0089660:intron | 20.0% |
| !! | TATTTGTAATTGGGATAAAT+TGG | - | chr1_2:71262398-71262417 | Msa0089660:intron | 20.0% |
| !! | ATTTGTAATTGGGATAAATT+GGG | - | chr1_2:71262399-71262418 | Msa0089660:intron | 20.0% |
| !! | AAATTAGCTATTTATGTCAA+GGG | + | chr1_2:71262469-71262488 | None:intergenic | 20.0% |
| !! | TGACATAGTATAAGAAATTA+TGG | + | chr1_2:71262770-71262789 | None:intergenic | 20.0% |
| !!! | ATTATTAGACTTATTTTCGA+TGG | - | chr1_2:71262952-71262971 | Msa0089660:intron | 20.0% |
| !! | ATATGTGAATATATGGAAAA+TGG | + | chr1_2:71263006-71263025 | None:intergenic | 20.0% |
| !! | ATATATTGTACTTTGATTAC+TGG | - | chr1_2:71263867-71263886 | Msa0089660:intron | 20.0% |
| ! | TGCTTCAAATTTCAGTAATT+TGG | - | chr1_2:71262085-71262104 | Msa0089660:CDS | 25.0% |
| ! | GCTTCAAATTTCAGTAATTT+GGG | - | chr1_2:71262086-71262105 | Msa0089660:CDS | 25.0% |
| !!! | AAAATAAAGCACCTTTTCAA+TGG | + | chr1_2:71262189-71262208 | None:intergenic | 25.0% |
| ! | TAAAAACAACAATTCAGACA+AGG | + | chr1_2:71262225-71262244 | None:intergenic | 25.0% |
| ! | GAAATTAGCTATTTATGTCA+AGG | + | chr1_2:71262470-71262489 | None:intergenic | 25.0% |
| ! | ACAAAATTTACAAATCATGG+AGG | + | chr1_2:71262558-71262577 | None:intergenic | 25.0% |
| ! | AGCACAAAATTTACAAATCA+TGG | + | chr1_2:71262561-71262580 | None:intergenic | 25.0% |
| ! | TTTAATCTTCATAATCTGTG+TGG | - | chr1_2:71262734-71262753 | Msa0089660:intron | 25.0% |
| ! | ACTAACATACAATTCAGAAA+AGG | + | chr1_2:71262867-71262886 | None:intergenic | 25.0% |
| ! | AATATATGGAAAATGGATGT+CGG | + | chr1_2:71262999-71263018 | None:intergenic | 25.0% |
| ! | CAAATGAAAGAAAATGACAT+AGG | + | chr1_2:71263091-71263110 | None:intergenic | 25.0% |
| !!! | GTTTTGACAAATGAAATAGA+CGG | + | chr1_2:71263141-71263160 | None:intergenic | 25.0% |
| ! | TGAAAACTTCTATGAATCAT+AGG | + | chr1_2:71263163-71263182 | None:intergenic | 25.0% |
| ! | ATTTCACATAAGCATATAGT+TGG | - | chr1_2:71263194-71263213 | Msa0089660:intron | 25.0% |
| !!! | TTTTGATTTTGAGTATGTGT+TGG | - | chr1_2:71263218-71263237 | Msa0089660:intron | 25.0% |
| ! | ATGCATATGTATAAACATGT+AGG | - | chr1_2:71263244-71263263 | Msa0089660:intron | 25.0% |
| !! | ATCAACTTGTTCTTGTAATT+GGG | + | chr1_2:71263356-71263375 | None:intergenic | 25.0% |
| !! | TATCAACTTGTTCTTGTAAT+TGG | + | chr1_2:71263357-71263376 | None:intergenic | 25.0% |
| ! | TTGGTAAAATCCAATATTTG+AGG | + | chr1_2:71263556-71263575 | None:intergenic | 25.0% |
| !! | TCAAATATTGGATTTTACCA+AGG | - | chr1_2:71263555-71263574 | Msa0089660:intron | 25.0% |
| ! | ACATTCTAACAAAATACTCA+AGG | + | chr1_2:71263663-71263682 | None:intergenic | 25.0% |
| !! | TGAGTATTTTGTTAGAATGT+TGG | - | chr1_2:71263663-71263682 | Msa0089660:intron | 25.0% |
| ! | AATCATCAATGCATATTGTA+TGG | - | chr1_2:71263774-71263793 | Msa0089660:intron | 25.0% |
| ! | TTTATCATGAGATACAATCA+AGG | - | chr1_2:71263823-71263842 | Msa0089660:intron | 25.0% |
| ! | GTACAATATATATGAAGACT+AGG | + | chr1_2:71263858-71263877 | None:intergenic | 25.0% |
| ! | TGCTTCAAATTTCAGTAATT+TGG | - | chr1_2:71262085-71262104 | Msa0089660:CDS | 25.0% |
| ! | GCTTCAAATTTCAGTAATTT+GGG | - | chr1_2:71262086-71262105 | Msa0089660:CDS | 25.0% |
| !!! | AAAATAAAGCACCTTTTCAA+TGG | + | chr1_2:71262189-71262208 | None:intergenic | 25.0% |
| ! | TAAAAACAACAATTCAGACA+AGG | + | chr1_2:71262225-71262244 | None:intergenic | 25.0% |
| ! | GAAATTAGCTATTTATGTCA+AGG | + | chr1_2:71262470-71262489 | None:intergenic | 25.0% |
| ! | ACAAAATTTACAAATCATGG+AGG | + | chr1_2:71262558-71262577 | None:intergenic | 25.0% |
| ! | AGCACAAAATTTACAAATCA+TGG | + | chr1_2:71262561-71262580 | None:intergenic | 25.0% |
| ! | TTTAATCTTCATAATCTGTG+TGG | - | chr1_2:71262734-71262753 | Msa0089660:intron | 25.0% |
| ! | ACTAACATACAATTCAGAAA+AGG | + | chr1_2:71262867-71262886 | None:intergenic | 25.0% |
| ! | AATATATGGAAAATGGATGT+CGG | + | chr1_2:71262999-71263018 | None:intergenic | 25.0% |
| ! | CAAATGAAAGAAAATGACAT+AGG | + | chr1_2:71263091-71263110 | None:intergenic | 25.0% |
| !!! | GTTTTGACAAATGAAATAGA+CGG | + | chr1_2:71263141-71263160 | None:intergenic | 25.0% |
| ! | TGAAAACTTCTATGAATCAT+AGG | + | chr1_2:71263163-71263182 | None:intergenic | 25.0% |
| ! | ATTTCACATAAGCATATAGT+TGG | - | chr1_2:71263194-71263213 | Msa0089660:intron | 25.0% |
| !!! | TTTTGATTTTGAGTATGTGT+TGG | - | chr1_2:71263218-71263237 | Msa0089660:intron | 25.0% |
| ! | ATGCATATGTATAAACATGT+AGG | - | chr1_2:71263244-71263263 | Msa0089660:intron | 25.0% |
| !! | ATCAACTTGTTCTTGTAATT+GGG | + | chr1_2:71263356-71263375 | None:intergenic | 25.0% |
| !! | TATCAACTTGTTCTTGTAAT+TGG | + | chr1_2:71263357-71263376 | None:intergenic | 25.0% |
| ! | TTGGTAAAATCCAATATTTG+AGG | + | chr1_2:71263556-71263575 | None:intergenic | 25.0% |
| !! | TCAAATATTGGATTTTACCA+AGG | - | chr1_2:71263555-71263574 | Msa0089660:intron | 25.0% |
| ! | ACATTCTAACAAAATACTCA+AGG | + | chr1_2:71263663-71263682 | None:intergenic | 25.0% |
| !! | TGAGTATTTTGTTAGAATGT+TGG | - | chr1_2:71263663-71263682 | Msa0089660:intron | 25.0% |
| ! | AATCATCAATGCATATTGTA+TGG | - | chr1_2:71263774-71263793 | Msa0089660:intron | 25.0% |
| ! | TTTATCATGAGATACAATCA+AGG | - | chr1_2:71263823-71263842 | Msa0089660:intron | 25.0% |
| ! | GTACAATATATATGAAGACT+AGG | + | chr1_2:71263858-71263877 | None:intergenic | 25.0% |
| AATGGATCACTTAAAAAGCT+TGG | + | chr1_2:71262047-71262066 | None:intergenic | 30.0% | |
| TCAAATTTCAGTAATTTGGG+CGG | - | chr1_2:71262089-71262108 | Msa0089660:CDS | 30.0% | |
| ! | TAACCCTTGAAAATGTTTTG+CGG | - | chr1_2:71262112-71262131 | Msa0089660:CDS | 30.0% |
| ! | TATCCGCAAAACATTTTCAA+GGG | + | chr1_2:71262118-71262137 | None:intergenic | 30.0% |
| ! | TAAATCTGTGTAAGTGTTGT+TGG | - | chr1_2:71262148-71262167 | Msa0089660:intron | 30.0% |
| ! | TTTTCAATGGTTGTTCCAAA+AGG | + | chr1_2:71262176-71262195 | None:intergenic | 30.0% |
| !!! | TTTTGGAACAACCATTGAAA+AGG | - | chr1_2:71262175-71262194 | Msa0089660:intron | 30.0% |
| !!! | AAGGTGCTTTATTTTCAAGA+TGG | - | chr1_2:71262194-71262213 | Msa0089660:intron | 30.0% |
| AGTCAAAGATGCAGATATAT+AGG | + | chr1_2:71262516-71262535 | None:intergenic | 30.0% | |
| !! | TAGGATTAAAGGCATGATTT+TGG | - | chr1_2:71262704-71262723 | Msa0089660:intron | 30.0% |
| ! | TCTTTTCTTGAAAAAGAGAG+AGG | - | chr1_2:71262797-71262816 | Msa0089660:intron | 30.0% |
| GCATTAAAAAACAACAGACA+TGG | + | chr1_2:71263043-71263062 | None:intergenic | 30.0% | |
| !!! | GTTTTTTAATGCTGAAAGTG+AGG | - | chr1_2:71263051-71263070 | Msa0089660:intron | 30.0% |
| CTGCAGAATAAGAAACATAA+AGG | + | chr1_2:71263273-71263292 | None:intergenic | 30.0% | |
| ! | ATTTAGCTTCTAACACTGTT+GGG | - | chr1_2:71263386-71263405 | Msa0089660:intron | 30.0% |
| TGTGAGAGATAAGATTATCA+AGG | - | chr1_2:71263486-71263505 | Msa0089660:intron | 30.0% | |
| TTTGAGAGGATGGAAAAATA+TGG | - | chr1_2:71263523-71263542 | Msa0089660:intron | 30.0% | |
| CAAAATACTCAAGGTAGTAT+AGG | + | chr1_2:71263654-71263673 | None:intergenic | 30.0% | |
| TGAAGGTTAATGAAGTTTGT+AGG | - | chr1_2:71263705-71263724 | Msa0089660:intron | 30.0% | |
| GAAGGTTAATGAAGTTTGTA+GGG | - | chr1_2:71263706-71263725 | Msa0089660:intron | 30.0% | |
| CTATGCAAAATGAAGAAGAA+GGG | - | chr1_2:71263919-71263938 | Msa0089660:intron | 30.0% | |
| TATGCAAAATGAAGAAGAAG+GGG | - | chr1_2:71263920-71263939 | Msa0089660:intron | 30.0% | |
| AATGGATCACTTAAAAAGCT+TGG | + | chr1_2:71262047-71262066 | None:intergenic | 30.0% | |
| TCAAATTTCAGTAATTTGGG+CGG | - | chr1_2:71262089-71262108 | Msa0089660:CDS | 30.0% | |
| ! | TAACCCTTGAAAATGTTTTG+CGG | - | chr1_2:71262112-71262131 | Msa0089660:CDS | 30.0% |
| ! | TATCCGCAAAACATTTTCAA+GGG | + | chr1_2:71262118-71262137 | None:intergenic | 30.0% |
| ! | TAAATCTGTGTAAGTGTTGT+TGG | - | chr1_2:71262148-71262167 | Msa0089660:intron | 30.0% |
| ! | TTTTCAATGGTTGTTCCAAA+AGG | + | chr1_2:71262176-71262195 | None:intergenic | 30.0% |
| !!! | TTTTGGAACAACCATTGAAA+AGG | - | chr1_2:71262175-71262194 | Msa0089660:intron | 30.0% |
| !!! | AAGGTGCTTTATTTTCAAGA+TGG | - | chr1_2:71262194-71262213 | Msa0089660:intron | 30.0% |
| AGTCAAAGATGCAGATATAT+AGG | + | chr1_2:71262516-71262535 | None:intergenic | 30.0% | |
| !! | TAGGATTAAAGGCATGATTT+TGG | - | chr1_2:71262704-71262723 | Msa0089660:intron | 30.0% |
| ! | TCTTTTCTTGAAAAAGAGAG+AGG | - | chr1_2:71262797-71262816 | Msa0089660:intron | 30.0% |
| GCATTAAAAAACAACAGACA+TGG | + | chr1_2:71263043-71263062 | None:intergenic | 30.0% | |
| !!! | GTTTTTTAATGCTGAAAGTG+AGG | - | chr1_2:71263051-71263070 | Msa0089660:intron | 30.0% |
| CTGCAGAATAAGAAACATAA+AGG | + | chr1_2:71263273-71263292 | None:intergenic | 30.0% | |
| ! | ATTTAGCTTCTAACACTGTT+GGG | - | chr1_2:71263386-71263405 | Msa0089660:intron | 30.0% |
| TGTGAGAGATAAGATTATCA+AGG | - | chr1_2:71263486-71263505 | Msa0089660:intron | 30.0% | |
| TTTGAGAGGATGGAAAAATA+TGG | - | chr1_2:71263523-71263542 | Msa0089660:intron | 30.0% | |
| CAAAATACTCAAGGTAGTAT+AGG | + | chr1_2:71263654-71263673 | None:intergenic | 30.0% | |
| TGAAGGTTAATGAAGTTTGT+AGG | - | chr1_2:71263705-71263724 | Msa0089660:intron | 30.0% | |
| GAAGGTTAATGAAGTTTGTA+GGG | - | chr1_2:71263706-71263725 | Msa0089660:intron | 30.0% | |
| CTATGCAAAATGAAGAAGAA+GGG | - | chr1_2:71263919-71263938 | Msa0089660:intron | 30.0% | |
| TATGCAAAATGAAGAAGAAG+GGG | - | chr1_2:71263920-71263939 | Msa0089660:intron | 30.0% | |
| !! | AAAGCTTGGTGTGATTTAGA+TGG | + | chr1_2:71262033-71262052 | None:intergenic | 35.0% |
| !! | AGTGATCCATTGACTTTGTT+AGG | - | chr1_2:71262056-71262075 | Msa0089660:CDS | 35.0% |
| ! | GTATCCGCAAAACATTTTCA+AGG | + | chr1_2:71262119-71262138 | None:intergenic | 35.0% |
| !! | TAAGTGTTGTTGGATCCTTT+TGG | - | chr1_2:71262158-71262177 | Msa0089660:intron | 35.0% |
| ! | TTTTAACCGATGTTGCTCAT+AGG | - | chr1_2:71262240-71262259 | Msa0089660:CDS | 35.0% |
| ! | ACTTTTCCTATGAGCAACAT+CGG | + | chr1_2:71262249-71262268 | None:intergenic | 35.0% |
| !!! | TGTTTTGAAGACAATCTCAG+AGG | + | chr1_2:71262914-71262933 | None:intergenic | 35.0% |
| ! | CATTTAGCTTCTAACACTGT+TGG | - | chr1_2:71263385-71263404 | Msa0089660:intron | 35.0% |
| TGGATTGAAGCCTCAAATAT+TGG | - | chr1_2:71263543-71263562 | Msa0089660:intron | 35.0% | |
| GATAAAGCACAAGAACTGAT+CGG | - | chr1_2:71263614-71263633 | Msa0089660:intron | 35.0% | |
| GGTAGTATAGGACTTAAGAT+AGG | + | chr1_2:71263642-71263661 | None:intergenic | 35.0% | |
| !! | CCTTCAACAAATTTTGCTGT+TGG | + | chr1_2:71263691-71263710 | None:intergenic | 35.0% |
| !! | CCAACAGCAAAATTTGTTGA+AGG | - | chr1_2:71263688-71263707 | Msa0089660:intron | 35.0% |
| ! | TGTACTTTGATTACTGGTCT+TGG | - | chr1_2:71263873-71263892 | Msa0089660:intron | 35.0% |
| !! | TTGATTACTGGTCTTGGTAA+TGG | - | chr1_2:71263879-71263898 | Msa0089660:intron | 35.0% |
| GCTATGCAAAATGAAGAAGA+AGG | - | chr1_2:71263918-71263937 | Msa0089660:intron | 35.0% | |
| !!! | GCGTTCTCTCTTACATTTTT+TGG | - | chr1_2:71263957-71263976 | Msa0089660:intron | 35.0% |
| !! | AAAGCTTGGTGTGATTTAGA+TGG | + | chr1_2:71262033-71262052 | None:intergenic | 35.0% |
| !! | AGTGATCCATTGACTTTGTT+AGG | - | chr1_2:71262056-71262075 | Msa0089660:CDS | 35.0% |
| ! | GTATCCGCAAAACATTTTCA+AGG | + | chr1_2:71262119-71262138 | None:intergenic | 35.0% |
| !! | TAAGTGTTGTTGGATCCTTT+TGG | - | chr1_2:71262158-71262177 | Msa0089660:intron | 35.0% |
| ! | TTTTAACCGATGTTGCTCAT+AGG | - | chr1_2:71262240-71262259 | Msa0089660:CDS | 35.0% |
| ! | ACTTTTCCTATGAGCAACAT+CGG | + | chr1_2:71262249-71262268 | None:intergenic | 35.0% |
| !!! | TGTTTTGAAGACAATCTCAG+AGG | + | chr1_2:71262914-71262933 | None:intergenic | 35.0% |
| ! | CATTTAGCTTCTAACACTGT+TGG | - | chr1_2:71263385-71263404 | Msa0089660:intron | 35.0% |
| TGGATTGAAGCCTCAAATAT+TGG | - | chr1_2:71263543-71263562 | Msa0089660:intron | 35.0% | |
| GATAAAGCACAAGAACTGAT+CGG | - | chr1_2:71263614-71263633 | Msa0089660:intron | 35.0% | |
| GGTAGTATAGGACTTAAGAT+AGG | + | chr1_2:71263642-71263661 | None:intergenic | 35.0% | |
| !! | CCTTCAACAAATTTTGCTGT+TGG | + | chr1_2:71263691-71263710 | None:intergenic | 35.0% |
| !! | CCAACAGCAAAATTTGTTGA+AGG | - | chr1_2:71263688-71263707 | Msa0089660:intron | 35.0% |
| ! | TGTACTTTGATTACTGGTCT+TGG | - | chr1_2:71263873-71263892 | Msa0089660:intron | 35.0% |
| !! | TTGATTACTGGTCTTGGTAA+TGG | - | chr1_2:71263879-71263898 | Msa0089660:intron | 35.0% |
| GCTATGCAAAATGAAGAAGA+AGG | - | chr1_2:71263918-71263937 | Msa0089660:intron | 35.0% | |
| !!! | GCGTTCTCTCTTACATTTTT+TGG | - | chr1_2:71263957-71263976 | Msa0089660:intron | 35.0% |
| !! | GATCCATTGACTTTGTTAGG+AGG | - | chr1_2:71262059-71262078 | Msa0089660:CDS | 40.0% |
| ATGCCTCCTAACAAAGTCAA+TGG | + | chr1_2:71262065-71262084 | None:intergenic | 40.0% | |
| GATGTTGCTCATAGGAAAAG+TGG | - | chr1_2:71262248-71262267 | Msa0089660:CDS | 40.0% | |
| CCAACGACAAAAATAACACG+TGG | + | chr1_2:71262305-71262324 | None:intergenic | 40.0% | |
| !!! | CCACGTGTTATTTTTGTCGT+TGG | - | chr1_2:71262302-71262321 | Msa0089660:CDS | 40.0% |
| TTGCTGCATTTGCTTGTACT+TGG | - | chr1_2:71262670-71262689 | Msa0089660:intron | 40.0% | |
| TGCTGCATTTGCTTGTACTT+GGG | - | chr1_2:71262671-71262690 | Msa0089660:intron | 40.0% | |
| CCATTGCAGGAGTAACTTTA+TGG | + | chr1_2:71263324-71263343 | None:intergenic | 40.0% | |
| CCATAAAGTTACTCCTGCAA+TGG | - | chr1_2:71263321-71263340 | Msa0089660:intron | 40.0% | |
| ! | CATTCTTGCTCTGGGTAATT+TGG | + | chr1_2:71263435-71263454 | None:intergenic | 40.0% |
| CAAATTACCCAGAGCAAGAA+TGG | - | chr1_2:71263433-71263452 | Msa0089660:intron | 40.0% | |
| !!! | ACACTTTTTCCCTCATTGCT+CGG | - | chr1_2:71263458-71263477 | Msa0089660:intron | 40.0% |
| AACCATTGAAGACGTTTGAG+AGG | - | chr1_2:71263509-71263528 | Msa0089660:intron | 40.0% | |
| ATCCTCTCAAACGTCTTCAA+TGG | + | chr1_2:71263514-71263533 | None:intergenic | 40.0% | |
| ATTGAAGACGTTTGAGAGGA+TGG | - | chr1_2:71263513-71263532 | Msa0089660:intron | 40.0% | |
| ! | GCACGAAACATTGATTACCT+TGG | + | chr1_2:71263575-71263594 | None:intergenic | 40.0% |
| TGAAGTTTGTAGGGAGATGA+AGG | - | chr1_2:71263715-71263734 | Msa0089660:intron | 40.0% | |
| !! | TCTTGGTAATGGTAGTCGAA+TGG | - | chr1_2:71263890-71263909 | Msa0089660:intron | 40.0% |
| AAATGAAGAAGAAGGGGCAA+AGG | - | chr1_2:71263926-71263945 | Msa0089660:intron | 40.0% | |
| !! | GATCCATTGACTTTGTTAGG+AGG | - | chr1_2:71262059-71262078 | Msa0089660:CDS | 40.0% |
| ATGCCTCCTAACAAAGTCAA+TGG | + | chr1_2:71262065-71262084 | None:intergenic | 40.0% | |
| GATGTTGCTCATAGGAAAAG+TGG | - | chr1_2:71262248-71262267 | Msa0089660:CDS | 40.0% | |
| CCAACGACAAAAATAACACG+TGG | + | chr1_2:71262305-71262324 | None:intergenic | 40.0% | |
| !!! | CCACGTGTTATTTTTGTCGT+TGG | - | chr1_2:71262302-71262321 | Msa0089660:CDS | 40.0% |
| TTGCTGCATTTGCTTGTACT+TGG | - | chr1_2:71262670-71262689 | Msa0089660:intron | 40.0% | |
| TGCTGCATTTGCTTGTACTT+GGG | - | chr1_2:71262671-71262690 | Msa0089660:intron | 40.0% | |
| CCATTGCAGGAGTAACTTTA+TGG | + | chr1_2:71263324-71263343 | None:intergenic | 40.0% | |
| CCATAAAGTTACTCCTGCAA+TGG | - | chr1_2:71263321-71263340 | Msa0089660:intron | 40.0% | |
| ! | CATTCTTGCTCTGGGTAATT+TGG | + | chr1_2:71263435-71263454 | None:intergenic | 40.0% |
| CAAATTACCCAGAGCAAGAA+TGG | - | chr1_2:71263433-71263452 | Msa0089660:intron | 40.0% | |
| !!! | ACACTTTTTCCCTCATTGCT+CGG | - | chr1_2:71263458-71263477 | Msa0089660:intron | 40.0% |
| AACCATTGAAGACGTTTGAG+AGG | - | chr1_2:71263509-71263528 | Msa0089660:intron | 40.0% | |
| ATCCTCTCAAACGTCTTCAA+TGG | + | chr1_2:71263514-71263533 | None:intergenic | 40.0% | |
| ATTGAAGACGTTTGAGAGGA+TGG | - | chr1_2:71263513-71263532 | Msa0089660:intron | 40.0% | |
| ! | GCACGAAACATTGATTACCT+TGG | + | chr1_2:71263575-71263594 | None:intergenic | 40.0% |
| TGAAGTTTGTAGGGAGATGA+AGG | - | chr1_2:71263715-71263734 | Msa0089660:intron | 40.0% | |
| !! | TCTTGGTAATGGTAGTCGAA+TGG | - | chr1_2:71263890-71263909 | Msa0089660:intron | 40.0% |
| AAATGAAGAAGAAGGGGCAA+AGG | - | chr1_2:71263926-71263945 | Msa0089660:intron | 40.0% | |
| GCTGCATTTGCTTGTACTTG+GGG | - | chr1_2:71262672-71262691 | Msa0089660:intron | 45.0% | |
| GGTGCATGGGATAGGATTAA+AGG | - | chr1_2:71262693-71262712 | Msa0089660:intron | 45.0% | |
| CGATACATCGCACTTCACAT+AGG | + | chr1_2:71262838-71262857 | None:intergenic | 45.0% | |
| CGATGGTAATTCACTCCCAA+CGG | - | chr1_2:71262969-71262988 | Msa0089660:intron | 45.0% | |
| CTGAAAGTGAGGTTCTGTGA+TGG | - | chr1_2:71263062-71263081 | Msa0089660:intron | 45.0% | |
| ACACTGTTGGGACATTGCAA+AGG | - | chr1_2:71263398-71263417 | Msa0089660:intron | 45.0% | |
| CACTGTTGGGACATTGCAAA+GGG | - | chr1_2:71263399-71263418 | Msa0089660:intron | 45.0% | |
| AGTGTCACCATTCTTGCTCT+GGG | + | chr1_2:71263443-71263462 | None:intergenic | 45.0% | |
| AAGTGTCACCATTCTTGCTC+TGG | + | chr1_2:71263444-71263463 | None:intergenic | 45.0% | |
| TGTAGGGAGATGAAGGATGA+TGG | - | chr1_2:71263722-71263741 | Msa0089660:intron | 45.0% | |
| TATACCATAGTAACCGCGTC+AGG | + | chr1_2:71263755-71263774 | None:intergenic | 45.0% | |
| GCTGCATTTGCTTGTACTTG+GGG | - | chr1_2:71262672-71262691 | Msa0089660:intron | 45.0% | |
| GGTGCATGGGATAGGATTAA+AGG | - | chr1_2:71262693-71262712 | Msa0089660:intron | 45.0% | |
| CGATACATCGCACTTCACAT+AGG | + | chr1_2:71262838-71262857 | None:intergenic | 45.0% | |
| CGATGGTAATTCACTCCCAA+CGG | - | chr1_2:71262969-71262988 | Msa0089660:intron | 45.0% | |
| CTGAAAGTGAGGTTCTGTGA+TGG | - | chr1_2:71263062-71263081 | Msa0089660:intron | 45.0% | |
| ACACTGTTGGGACATTGCAA+AGG | - | chr1_2:71263398-71263417 | Msa0089660:intron | 45.0% | |
| CACTGTTGGGACATTGCAAA+GGG | - | chr1_2:71263399-71263418 | Msa0089660:intron | 45.0% | |
| AGTGTCACCATTCTTGCTCT+GGG | + | chr1_2:71263443-71263462 | None:intergenic | 45.0% | |
| AAGTGTCACCATTCTTGCTC+TGG | + | chr1_2:71263444-71263463 | None:intergenic | 45.0% | |
| TGTAGGGAGATGAAGGATGA+TGG | - | chr1_2:71263722-71263741 | Msa0089660:intron | 45.0% | |
| TATACCATAGTAACCGCGTC+AGG | + | chr1_2:71263755-71263774 | None:intergenic | 45.0% | |
| TTGCTTGTACTTGGGGTGCA+TGG | - | chr1_2:71262679-71262698 | Msa0089660:intron | 50.0% | |
| TGCTTGTACTTGGGGTGCAT+GGG | - | chr1_2:71262680-71262699 | Msa0089660:intron | 50.0% | |
| ATGGATGTCGGATGTCCGTT+GGG | + | chr1_2:71262987-71263006 | None:intergenic | 50.0% | |
| AATGGATGTCGGATGTCCGT+TGG | + | chr1_2:71262988-71263007 | None:intergenic | 50.0% | |
| TGGGAGACAATGTCCATTGC+AGG | + | chr1_2:71263337-71263356 | None:intergenic | 50.0% | |
| ! | TTGCTCTGGGTAATTTGGCG+AGG | + | chr1_2:71263430-71263449 | None:intergenic | 50.0% |
| CACATATCGCCGAGCAATGA+GGG | + | chr1_2:71263470-71263489 | None:intergenic | 50.0% | |
| TCACATATCGCCGAGCAATG+AGG | + | chr1_2:71263471-71263490 | None:intergenic | 50.0% | |
| !!! | TGATGGTTTTGAGCCTGACG+CGG | - | chr1_2:71263739-71263758 | Msa0089660:intron | 50.0% |
| TTGCTTGTACTTGGGGTGCA+TGG | - | chr1_2:71262679-71262698 | Msa0089660:intron | 50.0% | |
| TGCTTGTACTTGGGGTGCAT+GGG | - | chr1_2:71262680-71262699 | Msa0089660:intron | 50.0% | |
| ATGGATGTCGGATGTCCGTT+GGG | + | chr1_2:71262987-71263006 | None:intergenic | 50.0% | |
| AATGGATGTCGGATGTCCGT+TGG | + | chr1_2:71262988-71263007 | None:intergenic | 50.0% | |
| TGGGAGACAATGTCCATTGC+AGG | + | chr1_2:71263337-71263356 | None:intergenic | 50.0% | |
| ! | TTGCTCTGGGTAATTTGGCG+AGG | + | chr1_2:71263430-71263449 | None:intergenic | 50.0% |
| CACATATCGCCGAGCAATGA+GGG | + | chr1_2:71263470-71263489 | None:intergenic | 50.0% | |
| TCACATATCGCCGAGCAATG+AGG | + | chr1_2:71263471-71263490 | None:intergenic | 50.0% | |
| !!! | TGATGGTTTTGAGCCTGACG+CGG | - | chr1_2:71263739-71263758 | Msa0089660:intron | 50.0% |
| GTACTTGGGGTGCATGGGAT+AGG | - | chr1_2:71262685-71262704 | Msa0089660:intron | 55.0% | |
| TGAGCCTGACGCGGTTACTA+TGG | - | chr1_2:71263748-71263767 | Msa0089660:intron | 55.0% | |
| GTACTTGGGGTGCATGGGAT+AGG | - | chr1_2:71262685-71262704 | Msa0089660:intron | 55.0% | |
| TGAGCCTGACGCGGTTACTA+TGG | - | chr1_2:71263748-71263767 | Msa0089660:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 71262010 | 71263989 | 71262010 | ID=Msa0089660;Name=Msa0089660 |
| chr1_2 | mRNA | 71262010 | 71263989 | 71262010 | ID=Msa0089660-mRNA-1;Parent=Msa0089660;Name=Msa0089660-mRNA-1;_AED=0.44;_eAED=0.52;_QI=0|0|0|1|0|0|4|0|178 |
| chr1_2 | exon | 71263980 | 71263989 | 71263980 | ID=Msa0089660-mRNA-1:exon:24584;Parent=Msa0089660-mRNA-1 |
| chr1_2 | exon | 71262403 | 71262607 | 71262403 | ID=Msa0089660-mRNA-1:exon:24583;Parent=Msa0089660-mRNA-1 |
| chr1_2 | exon | 71262230 | 71262395 | 71262230 | ID=Msa0089660-mRNA-1:exon:24582;Parent=Msa0089660-mRNA-1 |
| chr1_2 | exon | 71262010 | 71262165 | 71262010 | ID=Msa0089660-mRNA-1:exon:24581;Parent=Msa0089660-mRNA-1 |
| chr1_2 | CDS | 71263980 | 71263989 | 71263980 | ID=Msa0089660-mRNA-1:cds;Parent=Msa0089660-mRNA-1 |
| chr1_2 | CDS | 71262403 | 71262607 | 71262403 | ID=Msa0089660-mRNA-1:cds;Parent=Msa0089660-mRNA-1 |
| chr1_2 | CDS | 71262230 | 71262395 | 71262230 | ID=Msa0089660-mRNA-1:cds;Parent=Msa0089660-mRNA-1 |
| chr1_2 | CDS | 71262010 | 71262165 | 71262010 | ID=Msa0089660-mRNA-1:cds;Parent=Msa0089660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
