Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0264330 | KEH39434.1 | 78.125 | 96 | 10 | 1 | 1 | 96 | 1 | 85 | 1.85e-41 | 141 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0264330 | A0A072VBQ2 | 78.125 | 96 | 10 | 1 | 1 | 96 | 1 | 85 | 8.85e-42 | 141 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003890 | Msa0264330 | 0.808082 | 3.687838e-50 | -8.615850e-47 |
| Msa0012080 | Msa0264330 | 0.811780 | 5.898704e-51 | -8.615850e-47 |
| Msa0032090 | Msa0264330 | 0.815537 | 8.787622e-52 | -8.615850e-47 |
| Msa0032430 | Msa0264330 | 0.807819 | 4.194471e-50 | -8.615850e-47 |
| Msa0032580 | Msa0264330 | 0.809605 | 1.741916e-50 | -8.615850e-47 |
| Msa0033980 | Msa0264330 | 0.811682 | 6.196130e-51 | -8.615850e-47 |
| Msa0040450 | Msa0264330 | 0.806474 | 8.082227e-50 | -8.615850e-47 |
| Msa0067990 | Msa0264330 | 0.810380 | 1.186401e-50 | -8.615850e-47 |
| Msa0079380 | Msa0264330 | 0.813661 | 2.285709e-51 | -8.615850e-47 |
| Msa0081930 | Msa0264330 | 0.811425 | 7.046769e-51 | -8.615850e-47 |
| Msa0089660 | Msa0264330 | 0.805005 | 1.644693e-49 | -8.615850e-47 |
| Msa0113750 | Msa0264330 | 0.813113 | 3.017100e-51 | -8.615850e-47 |
| Msa0127050 | Msa0264330 | 0.805618 | 1.223593e-49 | -8.615850e-47 |
| Msa0128020 | Msa0264330 | 0.803682 | 3.103167e-49 | -8.615850e-47 |
| Msa0136070 | Msa0264330 | 0.828235 | 1.006189e-54 | -8.615850e-47 |
| Msa0136100 | Msa0264330 | 0.812803 | 3.527579e-51 | -8.615850e-47 |
| Msa0150820 | Msa0264330 | 0.819427 | 1.168016e-52 | -8.615850e-47 |
| Msa0159180 | Msa0264330 | 0.807474 | 4.966917e-50 | -8.615850e-47 |
| Msa0160550 | Msa0264330 | 0.834869 | 2.335915e-56 | -8.615850e-47 |
| Msa0165220 | Msa0264330 | 0.806887 | 6.612319e-50 | -8.615850e-47 |
| Msa0172070 | Msa0264330 | 0.813362 | 2.660033e-51 | -8.615850e-47 |
| Msa0172970 | Msa0264330 | 0.801483 | 8.816802e-49 | -8.615850e-47 |
| Msa0192510 | Msa0264330 | 0.801640 | 8.184888e-49 | -8.615850e-47 |
| Msa0193120 | Msa0264330 | 0.800209 | 1.604332e-48 | -8.615850e-47 |
| Msa0222620 | Msa0264330 | 0.805321 | 1.412459e-49 | -8.615850e-47 |
| Msa0222890 | Msa0264330 | 0.801970 | 7.003055e-49 | -8.615850e-47 |
| Msa0225740 | Msa0264330 | 0.800966 | 1.124499e-48 | -8.615850e-47 |
| Msa0264330 | Msa0279220 | 0.803372 | 3.597643e-49 | -8.615850e-47 |
| Msa0264330 | Msa0279240 | 0.813289 | 2.760106e-51 | -8.615850e-47 |
| Msa0264330 | Msa0279790 | 0.812253 | 4.653874e-51 | -8.615850e-47 |
| Msa0264330 | Msa0280090 | 0.809294 | 2.032112e-50 | -8.615850e-47 |
| Msa0264330 | Msa0289250 | 0.817519 | 3.161829e-52 | -8.615850e-47 |
| Msa0264330 | Msa0298700 | 0.819348 | 1.217539e-52 | -8.615850e-47 |
| Msa0264330 | Msa0299870 | 0.806287 | 8.852320e-50 | -8.615850e-47 |
| Msa0264330 | Msa0309770 | 0.838660 | 2.519775e-57 | -8.615850e-47 |
| Msa0264330 | Msa0318980 | 0.824797 | 6.642957e-54 | -8.615850e-47 |
| Msa0264330 | Msa0333030 | 0.801089 | 1.061152e-48 | -8.615850e-47 |
| Msa0264330 | Msa0385580 | 0.806683 | 7.301865e-50 | -8.615850e-47 |
| Msa0264330 | Msa0393080 | 0.802429 | 5.634001e-49 | -8.615850e-47 |
| Msa0264330 | Msa0481530 | 0.804381 | 2.220498e-49 | -8.615850e-47 |
| Msa0264330 | Msa0509710 | 0.804108 | 2.530201e-49 | -8.615850e-47 |
| Msa0264330 | Msa0510930 | 0.807259 | 5.515543e-50 | -8.615850e-47 |
| Msa0264330 | Msa0511310 | 0.805950 | 1.042403e-49 | -8.615850e-47 |
| Msa0264330 | Msa0529890 | 0.805868 | 1.084318e-49 | -8.615850e-47 |
| Msa0264330 | Msa0555450 | 0.803505 | 3.376075e-49 | -8.615850e-47 |
| Msa0264330 | Msa0585560 | 0.800872 | 1.175370e-48 | -8.615850e-47 |
| Msa0264330 | Msa0602390 | 0.811856 | 5.678304e-51 | -8.615850e-47 |
| Msa0264330 | Msa0610430 | 0.825813 | 3.819231e-54 | -8.615850e-47 |
| Msa0264330 | Msa0621490 | 0.834060 | 3.728034e-56 | -8.615850e-47 |
| Msa0264330 | Msa0625720 | 0.811791 | 5.867913e-51 | -8.615850e-47 |
| Msa0264330 | Msa0641670 | 0.816674 | 4.895781e-52 | -8.615850e-47 |
| Msa0264330 | Msa0661190 | -0.807170 | 5.762225e-50 | -8.615850e-47 |
| Msa0264330 | Msa0663390 | 0.804202 | 2.419399e-49 | -8.615850e-47 |
| Msa0264330 | Msa0688960 | 0.806878 | 6.642495e-50 | -8.615850e-47 |
| Msa0264330 | Msa0691900 | 0.812158 | 4.881209e-51 | -8.615850e-47 |
| Msa0264330 | Msa0692830 | 0.815167 | 1.061884e-51 | -8.615850e-47 |
| Msa0264330 | Msa0692950 | 0.805541 | 1.270178e-49 | -8.615850e-47 |
| Msa0264330 | Msa0707250 | 0.810851 | 9.386816e-51 | -8.615850e-47 |
| Msa0264330 | Msa0716840 | 0.815681 | 8.160000e-52 | -8.615850e-47 |
| Msa0264330 | Msa0745790 | 0.806592 | 7.633293e-50 | -8.615850e-47 |
| Msa0264330 | Msa0769920 | 0.800368 | 1.489254e-48 | -8.615850e-47 |
| Msa0264330 | Msa0794670 | 0.800606 | 1.332131e-48 | -8.615850e-47 |
| Msa0264330 | Msa0796700 | 0.813844 | 2.083441e-51 | -8.615850e-47 |
| Msa0264330 | Msa0804230 | 0.819516 | 1.114848e-52 | -8.615850e-47 |
| Msa0264330 | Msa0808270 | 0.825093 | 5.655213e-54 | -8.615850e-47 |
| Msa0264330 | Msa0850960 | 0.802213 | 6.242658e-49 | -8.615850e-47 |
| Msa0264330 | Msa0876200 | 0.805755 | 1.145209e-49 | -8.615850e-47 |
| Msa0264330 | Msa0938220 | 0.802033 | 6.797634e-49 | -8.615850e-47 |
| Msa0264330 | Msa0944190 | 0.801646 | 8.160287e-49 | -8.615850e-47 |
| Msa0264330 | Msa0945970 | 0.823614 | 1.259831e-53 | -8.615850e-47 |
| Msa0264330 | Msa0969810 | 0.809797 | 1.583871e-50 | -8.615850e-47 |
| Msa0264330 | Msa0999970 | 0.812731 | 3.657659e-51 | -8.615850e-47 |
| Msa0264330 | Msa1003620 | 0.800139 | 1.657940e-48 | -8.615850e-47 |
| Msa0264330 | Msa1014540 | 0.822211 | 2.673860e-53 | -8.615850e-47 |
| Msa0264330 | Msa1037420 | 0.807014 | 6.215348e-50 | -8.615850e-47 |
| Msa0264330 | Msa1106700 | 0.802051 | 6.739353e-49 | -8.615850e-47 |
| Msa0264330 | Msa1162270 | 0.808849 | 2.530231e-50 | -8.615850e-47 |
| Msa0264330 | Msa1172400 | 0.816095 | 6.599470e-52 | -8.615850e-47 |
| Msa0264330 | Msa1174040 | 0.802169 | 6.373228e-49 | -8.615850e-47 |
| Msa0264330 | Msa1203250 | 0.813822 | 2.107000e-51 | -8.615850e-47 |
| Msa0264330 | Msa1209460 | 0.802241 | 6.160157e-49 | -8.615850e-47 |
| Msa0264330 | Msa1253020 | 0.802216 | 6.233758e-49 | -8.615850e-47 |
| Msa0264330 | Msa1275360 | 0.800607 | 1.331122e-48 | -8.615850e-47 |
| Msa0264330 | Msa1277660 | 0.805696 | 1.178503e-49 | -8.615850e-47 |
| Msa0264330 | Msa1287460 | 0.809827 | 1.560907e-50 | -8.615850e-47 |
| Msa0264330 | Msa1340470 | 0.829524 | 4.907025e-55 | -8.615850e-47 |
| Msa0264330 | Msa1348490 | 0.801764 | 7.720693e-49 | -8.615850e-47 |
| Msa0264330 | Msa1385770 | 0.800772 | 1.232092e-48 | -8.615850e-47 |
| Msa0264330 | Msa1393570 | 0.806272 | 8.914129e-50 | -8.615850e-47 |
| Msa0264330 | Msa1394500 | 0.805596 | 1.237049e-49 | -8.615850e-47 |
| Msa0264330 | Msa1409240 | 0.800031 | 1.743641e-48 | -8.615850e-47 |
| Msa0264330 | Msa1410100 | 0.832235 | 1.061389e-55 | -8.615850e-47 |
| Msa0264330 | Msa1416150 | 0.810409 | 1.169662e-50 | -8.615850e-47 |
| Msa0264330 | Msa1423350 | 0.800898 | 1.161336e-48 | -8.615850e-47 |
| Msa0264330 | Msa1424750 | 0.804650 | 1.950602e-49 | -8.615850e-47 |
| Msa0264330 | Msa1426030 | 0.806225 | 9.123370e-50 | -8.615850e-47 |
| Msa0264330 | Msa1427230 | 0.804449 | 2.148575e-49 | -8.615850e-47 |
| Msa0264330 | Msa1442700 | 0.808188 | 3.500810e-50 | -8.615850e-47 |
| Msa0264330 | Msa1443850 | 0.806780 | 6.967365e-50 | -8.615850e-47 |
| Msa0264330 | Msa1460830 | 0.800152 | 1.648230e-48 | -8.615850e-47 |
| Msa0264330 | Msa1466540 | 0.817911 | 2.579621e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 33 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTTCATCTCTTGGTCCT+TGG | 0.309835 | 2_2:-64249084 | None:intergenic |
| ATATTCAGATGGCAAGGTTT+TGG | 0.323652 | 2_2:+64249143 | Msa0264330:CDS |
| ATGAAAGGGATTACATATTC+AGG | 0.353937 | 2_2:+64249098 | Msa0264330:CDS |
| ATCTCTTGGTCCTTGGTGCA+TGG | 0.358552 | 2_2:-64249077 | None:intergenic |
| AGGTGAGGATTCCCCGCCTT+TGG | 0.386925 | 2_2:+64247792 | Msa0264330:CDS |
| TGGTCCTTGGTGCATGGACC+AGG | 0.397324 | 2_2:-64249071 | None:intergenic |
| TTGGCTTCACAATGTACCTT+CGG | 0.403077 | 2_2:+64248886 | Msa0264330:CDS |
| GGTTCCAAGCTAAAAGCTTT+CGG | 0.407241 | 2_2:-64249050 | None:intergenic |
| ATGTAATCCCTTTCATCTCT+TGG | 0.434355 | 2_2:-64249091 | None:intergenic |
| ATGTAATCCCTTCCTTCTCT+TGG | 0.440627 | 2_2:-64249122 | None:intergenic |
| TGGCTTCACAATGTACCTTC+GGG | 0.451934 | 2_2:+64248887 | Msa0264330:CDS |
| CCAAGGACCAAGAGATGAAA+GGG | 0.465404 | 2_2:+64249084 | Msa0264330:CDS |
| AGACTTCTATTCACACTAGT+AGG | 0.466010 | 2_2:-64249181 | None:intergenic |
| GGAGATAAGTGCTGGTGGCT+TGG | 0.470552 | 2_2:+64247813 | Msa0264330:CDS |
| ATAAGTGCTGGTGGCTTGGT+TGG | 0.479016 | 2_2:+64247817 | Msa0264330:CDS |
| CCGCCTTTGGAGATAAGTGC+TGG | 0.496476 | 2_2:+64247805 | Msa0264330:CDS |
| CCAGCTTCAGTTGTTATGAA+AGG | 0.517495 | 2_2:+64247772 | None:intergenic |
| CAGCACTTATCTCCAAAGGC+GGG | 0.526423 | 2_2:-64247804 | None:intergenic |
| TTCAGGACCAAGAGAAGGAA+GGG | 0.533095 | 2_2:+64249115 | Msa0264330:CDS |
| GATTACATATTCAGATGGCA+AGG | 0.573196 | 2_2:+64249137 | Msa0264330:CDS |
| GAAGGGATTACATATTCAGA+TGG | 0.593397 | 2_2:+64249132 | Msa0264330:CDS |
| ATTCAGGACCAAGAGAAGGA+AGG | 0.598423 | 2_2:+64249114 | Msa0264330:CDS |
| TTCAGTTGTTATGAAAGGTG+AGG | 0.600368 | 2_2:+64247777 | None:intergenic |
| ACCAAGGACCAAGAGATGAA+AGG | 0.604348 | 2_2:+64249083 | Msa0264330:CDS |
| AAAGACACAATCGCAACACA+TGG | 0.606302 | 2_2:+64248914 | Msa0264330:CDS |
| ACATATTCAGGACCAAGAGA+AGG | 0.621450 | 2_2:+64249110 | Msa0264330:CDS |
| CCACCAGCACTTATCTCCAA+AGG | 0.627347 | 2_2:-64247808 | None:intergenic |
| AATCGCAACACATGGCGCAA+AGG | 0.628239 | 2_2:+64248922 | Msa0264330:CDS |
| AGCACTTATCTCCAAAGGCG+GGG | 0.629195 | 2_2:-64247803 | None:intergenic |
| CCAGCACTTATCTCCAAAGG+CGG | 0.636706 | 2_2:-64247805 | None:intergenic |
| ATTGTGTCTTTAGCACCCGA+AGG | 0.652031 | 2_2:-64248902 | None:intergenic |
| CCTTTGGAGATAAGTGCTGG+TGG | 0.664295 | 2_2:+64247808 | Msa0264330:CDS |
| GGAACCTGGTCCATGCACCA+AGG | 0.700852 | 2_2:+64249067 | Msa0264330:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATATTATTGTATCTTTTA+CGG | + | chr2_2:64248698-64248717 | Msa0264330:intron | 10.0% |
| !!! | TAATATTATTGTATCTTTTA+CGG | + | chr2_2:64248698-64248717 | Msa0264330:intron | 10.0% |
| !! | ACAAAAAAATATTAAAGAGA+AGG | - | chr2_2:64248195-64248214 | None:intergenic | 15.0% |
| !! | ACAAAAAAATATTAAAGAGA+AGG | - | chr2_2:64248195-64248214 | None:intergenic | 15.0% |
| !! | TTAAAAAACAAATATGCTTT+GGG | - | chr2_2:64248450-64248469 | None:intergenic | 15.0% |
| !! | ATTAAAAAACAAATATGCTT+TGG | - | chr2_2:64248451-64248470 | None:intergenic | 15.0% |
| !! | TATTGAATATACTAAAACTT+GGG | - | chr2_2:64248521-64248540 | None:intergenic | 15.0% |
| !! | TTATTGAATATACTAAAACT+TGG | - | chr2_2:64248522-64248541 | None:intergenic | 15.0% |
| !!! | AAGTTTTAGTATATTCAATA+AGG | + | chr2_2:64248521-64248540 | Msa0264330:intron | 15.0% |
| !!! | AGTTTTAGTATATTCAATAA+GGG | + | chr2_2:64248522-64248541 | Msa0264330:intron | 15.0% |
| !!! | TTTAAAATTTCAAGAAGTTA+TGG | + | chr2_2:64248601-64248620 | Msa0264330:intron | 15.0% |
| !! | GATAATTTATAATTTCTTGA+TGG | - | chr2_2:64248669-64248688 | None:intergenic | 15.0% |
| !! | GATACAATAATATTATAATG+AGG | - | chr2_2:64248693-64248712 | None:intergenic | 15.0% |
| !! | AGAAATAGTTAACTATTAAA+GGG | + | chr2_2:64248745-64248764 | Msa0264330:intron | 15.0% |
| !! | ACAAAAAAATATTAAAGAGA+AGG | - | chr2_2:64248195-64248214 | None:intergenic | 15.0% |
| !! | ACAAAAAAATATTAAAGAGA+AGG | - | chr2_2:64248195-64248214 | None:intergenic | 15.0% |
| !! | TTAAAAAACAAATATGCTTT+GGG | - | chr2_2:64248450-64248469 | None:intergenic | 15.0% |
| !! | ATTAAAAAACAAATATGCTT+TGG | - | chr2_2:64248451-64248470 | None:intergenic | 15.0% |
| !! | TATTGAATATACTAAAACTT+GGG | - | chr2_2:64248521-64248540 | None:intergenic | 15.0% |
| !! | TTATTGAATATACTAAAACT+TGG | - | chr2_2:64248522-64248541 | None:intergenic | 15.0% |
| !!! | AAGTTTTAGTATATTCAATA+AGG | + | chr2_2:64248521-64248540 | Msa0264330:intron | 15.0% |
| !!! | AGTTTTAGTATATTCAATAA+GGG | + | chr2_2:64248522-64248541 | Msa0264330:intron | 15.0% |
| !!! | TTTAAAATTTCAAGAAGTTA+TGG | + | chr2_2:64248601-64248620 | Msa0264330:intron | 15.0% |
| !! | GATAATTTATAATTTCTTGA+TGG | - | chr2_2:64248669-64248688 | None:intergenic | 15.0% |
| !! | GATACAATAATATTATAATG+AGG | - | chr2_2:64248693-64248712 | None:intergenic | 15.0% |
| !! | AGAAATAGTTAACTATTAAA+GGG | + | chr2_2:64248745-64248764 | Msa0264330:intron | 15.0% |
| !!! | TTCAGTTTTAGTTTATTATC+TGG | + | chr2_2:64247892-64247911 | Msa0264330:intron | 20.0% |
| !! | ACAGTTAAACTATCTAATAA+AGG | - | chr2_2:64248119-64248138 | None:intergenic | 20.0% |
| !! | TTATTAGATAGTTTAACTGT+TGG | + | chr2_2:64248119-64248138 | Msa0264330:intron | 20.0% |
| !! | AACAAAAACAAATATGCTTT+GGG | - | chr2_2:64248304-64248323 | None:intergenic | 20.0% |
| !! | ATTGAATATACTAAAACTTG+GGG | - | chr2_2:64248520-64248539 | None:intergenic | 20.0% |
| !! | GAGAAATAGTTAACTATTAA+AGG | + | chr2_2:64248744-64248763 | Msa0264330:intron | 20.0% |
| !!! | ATATTTTCCAAGTTTATTTC+AGG | - | chr2_2:64248831-64248850 | None:intergenic | 20.0% |
| !!! | ATGTACTTTTTATTAGTGTT+TGG | + | chr2_2:64248867-64248886 | Msa0264330:intron | 20.0% |
| !!! | TTCAGTTTTAGTTTATTATC+TGG | + | chr2_2:64247892-64247911 | Msa0264330:intron | 20.0% |
| !! | ACAGTTAAACTATCTAATAA+AGG | - | chr2_2:64248119-64248138 | None:intergenic | 20.0% |
| !! | TTATTAGATAGTTTAACTGT+TGG | + | chr2_2:64248119-64248138 | Msa0264330:intron | 20.0% |
| !! | AACAAAAACAAATATGCTTT+GGG | - | chr2_2:64248304-64248323 | None:intergenic | 20.0% |
| !! | ATTGAATATACTAAAACTTG+GGG | - | chr2_2:64248520-64248539 | None:intergenic | 20.0% |
| !! | GAGAAATAGTTAACTATTAA+AGG | + | chr2_2:64248744-64248763 | Msa0264330:intron | 20.0% |
| !!! | ATATTTTCCAAGTTTATTTC+AGG | - | chr2_2:64248831-64248850 | None:intergenic | 20.0% |
| !!! | ATGTACTTTTTATTAGTGTT+TGG | + | chr2_2:64248867-64248886 | Msa0264330:intron | 20.0% |
| !! | TTTTGAATCTGTTCTAATTG+TGG | + | chr2_2:64248222-64248241 | Msa0264330:intron | 25.0% |
| ! | CAACAAAAACAAATATGCTT+TGG | - | chr2_2:64248305-64248324 | None:intergenic | 25.0% |
| !! | TTTTGAATCTGTTCTAATTG+TGG | + | chr2_2:64248222-64248241 | Msa0264330:intron | 25.0% |
| !!! | GTTTTTTAATTCAGAGATCT+TGG | + | chr2_2:64248461-64248480 | Msa0264330:intron | 25.0% |
| ! | ATGAAAAGTGAAAAAGAAAG+AGG | + | chr2_2:64248554-64248573 | Msa0264330:intron | 25.0% |
| ! | GTTTATACTGATCATTGAAT+TGG | + | chr2_2:64248720-64248739 | Msa0264330:intron | 25.0% |
| !! | TTTTGAATCTGTTCTAATTG+TGG | + | chr2_2:64248222-64248241 | Msa0264330:intron | 25.0% |
| ! | CAACAAAAACAAATATGCTT+TGG | - | chr2_2:64248305-64248324 | None:intergenic | 25.0% |
| !! | TTTTGAATCTGTTCTAATTG+TGG | + | chr2_2:64248222-64248241 | Msa0264330:intron | 25.0% |
| !!! | GTTTTTTAATTCAGAGATCT+TGG | + | chr2_2:64248461-64248480 | Msa0264330:intron | 25.0% |
| ! | ATGAAAAGTGAAAAAGAAAG+AGG | + | chr2_2:64248554-64248573 | Msa0264330:intron | 25.0% |
| ! | GTTTATACTGATCATTGAAT+TGG | + | chr2_2:64248720-64248739 | Msa0264330:intron | 25.0% |
| TTTCTATACACACAACTTCA+AGG | + | chr2_2:64248075-64248094 | Msa0264330:intron | 30.0% | |
| TTCTATACACACAACTTCAA+GGG | + | chr2_2:64248076-64248095 | Msa0264330:intron | 30.0% | |
| !! | ATGCTTCTTCAATTGCTTTT+TGG | - | chr2_2:64248489-64248508 | None:intergenic | 30.0% |
| GAAGTTATGGTATTTGTCAT+CGG | + | chr2_2:64248614-64248633 | Msa0264330:intron | 30.0% | |
| TCAATGACCTGAAATAAACT+TGG | + | chr2_2:64248821-64248840 | Msa0264330:intron | 30.0% | |
| TTCACACAAAATGATATGCT+CGG | - | chr2_2:64248970-64248989 | None:intergenic | 30.0% | |
| GCAAACTTTATCAAACTGAA+TGG | - | chr2_2:64249001-64249020 | None:intergenic | 30.0% | |
| ATGAAAGGGATTACATATTC+AGG | + | chr2_2:64249098-64249117 | Msa0264330:CDS | 30.0% | |
| TTTCTATACACACAACTTCA+AGG | + | chr2_2:64248075-64248094 | Msa0264330:intron | 30.0% | |
| TTCTATACACACAACTTCAA+GGG | + | chr2_2:64248076-64248095 | Msa0264330:intron | 30.0% | |
| !! | ATGCTTCTTCAATTGCTTTT+TGG | - | chr2_2:64248489-64248508 | None:intergenic | 30.0% |
| GAAGTTATGGTATTTGTCAT+CGG | + | chr2_2:64248614-64248633 | Msa0264330:intron | 30.0% | |
| TCAATGACCTGAAATAAACT+TGG | + | chr2_2:64248821-64248840 | Msa0264330:intron | 30.0% | |
| TTCACACAAAATGATATGCT+CGG | - | chr2_2:64248970-64248989 | None:intergenic | 30.0% | |
| GCAAACTTTATCAAACTGAA+TGG | - | chr2_2:64249001-64249020 | None:intergenic | 30.0% | |
| ATGAAAGGGATTACATATTC+AGG | + | chr2_2:64249098-64249117 | Msa0264330:CDS | 30.0% | |
| CTGTTAGTATGAAAATGCGA+AGG | + | chr2_2:64247939-64247958 | Msa0264330:intron | 35.0% | |
| AAATGGAGGAATCAATCAAG+AGG | - | chr2_2:64248272-64248291 | None:intergenic | 35.0% | |
| TTGGGTTAAAGAGAAAATGG+AGG | - | chr2_2:64248286-64248305 | None:intergenic | 35.0% | |
| ! | GCTTTGGGTTAAAGAGAAAA+TGG | - | chr2_2:64248289-64248308 | None:intergenic | 35.0% |
| AAATGGAGGAATCAATCAAG+AGG | - | chr2_2:64248272-64248291 | None:intergenic | 35.0% | |
| TTGGGTTAAAGAGAAAATGG+AGG | - | chr2_2:64248286-64248305 | None:intergenic | 35.0% | |
| ! | GCTTTGGGTTAAAGAGAAAA+TGG | - | chr2_2:64248289-64248308 | None:intergenic | 35.0% |
| AACAACAATGATCCAAGTGA+AGG | + | chr2_2:64248768-64248787 | Msa0264330:intron | 35.0% | |
| ACAACAATGATCCAAGTGAA+GGG | + | chr2_2:64248769-64248788 | Msa0264330:intron | 35.0% | |
| TCACACAAAATGATATGCTC+GGG | - | chr2_2:64248969-64248988 | None:intergenic | 35.0% | |
| ATGTAATCCCTTTCATCTCT+TGG | - | chr2_2:64249094-64249113 | None:intergenic | 35.0% | |
| GAAGGGATTACATATTCAGA+TGG | + | chr2_2:64249132-64249151 | Msa0264330:CDS | 35.0% | |
| GATTACATATTCAGATGGCA+AGG | + | chr2_2:64249137-64249156 | Msa0264330:CDS | 35.0% | |
| ! | ATATTCAGATGGCAAGGTTT+TGG | + | chr2_2:64249143-64249162 | Msa0264330:CDS | 35.0% |
| CTGTTAGTATGAAAATGCGA+AGG | + | chr2_2:64247939-64247958 | Msa0264330:intron | 35.0% | |
| AAATGGAGGAATCAATCAAG+AGG | - | chr2_2:64248272-64248291 | None:intergenic | 35.0% | |
| TTGGGTTAAAGAGAAAATGG+AGG | - | chr2_2:64248286-64248305 | None:intergenic | 35.0% | |
| ! | GCTTTGGGTTAAAGAGAAAA+TGG | - | chr2_2:64248289-64248308 | None:intergenic | 35.0% |
| AAATGGAGGAATCAATCAAG+AGG | - | chr2_2:64248272-64248291 | None:intergenic | 35.0% | |
| TTGGGTTAAAGAGAAAATGG+AGG | - | chr2_2:64248286-64248305 | None:intergenic | 35.0% | |
| ! | GCTTTGGGTTAAAGAGAAAA+TGG | - | chr2_2:64248289-64248308 | None:intergenic | 35.0% |
| AACAACAATGATCCAAGTGA+AGG | + | chr2_2:64248768-64248787 | Msa0264330:intron | 35.0% | |
| ACAACAATGATCCAAGTGAA+GGG | + | chr2_2:64248769-64248788 | Msa0264330:intron | 35.0% | |
| TCACACAAAATGATATGCTC+GGG | - | chr2_2:64248969-64248988 | None:intergenic | 35.0% | |
| ATGTAATCCCTTTCATCTCT+TGG | - | chr2_2:64249094-64249113 | None:intergenic | 35.0% | |
| GAAGGGATTACATATTCAGA+TGG | + | chr2_2:64249132-64249151 | Msa0264330:CDS | 35.0% | |
| GATTACATATTCAGATGGCA+AGG | + | chr2_2:64249137-64249156 | Msa0264330:CDS | 35.0% | |
| ! | ATATTCAGATGGCAAGGTTT+TGG | + | chr2_2:64249143-64249162 | Msa0264330:CDS | 35.0% |
| ! | TCTTTTAGGCATCTGGTGAT+AGG | + | chr2_2:64247847-64247866 | Msa0264330:CDS | 40.0% |
| GTATGAAAATGCGAAGGAGT+TGG | + | chr2_2:64247945-64247964 | Msa0264330:intron | 40.0% | |
| ! | GCTTTGTTGCGAAAACTCAA+TGG | - | chr2_2:64248041-64248060 | None:intergenic | 40.0% |
| CAACAATGATCCAAGTGAAG+GGG | + | chr2_2:64248770-64248789 | Msa0264330:intron | 40.0% | |
| TTAACATGTTCCCCTTCACT+TGG | - | chr2_2:64248783-64248802 | None:intergenic | 40.0% | |
| TTGGCTTCACAATGTACCTT+CGG | + | chr2_2:64248886-64248905 | Msa0264330:CDS | 40.0% | |
| AAAGACACAATCGCAACACA+TGG | + | chr2_2:64248914-64248933 | Msa0264330:CDS | 40.0% | |
| GGTTCCAAGCTAAAAGCTTT+CGG | - | chr2_2:64249053-64249072 | None:intergenic | 40.0% | |
| !!! | AAAGCTTTTAGCTTGGAACC+TGG | + | chr2_2:64249053-64249072 | Msa0264330:CDS | 40.0% |
| ACATATTCAGGACCAAGAGA+AGG | + | chr2_2:64249110-64249129 | Msa0264330:CDS | 40.0% | |
| ATGTAATCCCTTCCTTCTCT+TGG | - | chr2_2:64249125-64249144 | None:intergenic | 40.0% | |
| !! | AAGGTTTTGGCAAGAAGGAA+AGG | + | chr2_2:64249156-64249175 | Msa0264330:CDS | 40.0% |
| ! | TCTTTTAGGCATCTGGTGAT+AGG | + | chr2_2:64247847-64247866 | Msa0264330:CDS | 40.0% |
| GTATGAAAATGCGAAGGAGT+TGG | + | chr2_2:64247945-64247964 | Msa0264330:intron | 40.0% | |
| ! | GCTTTGTTGCGAAAACTCAA+TGG | - | chr2_2:64248041-64248060 | None:intergenic | 40.0% |
| CAACAATGATCCAAGTGAAG+GGG | + | chr2_2:64248770-64248789 | Msa0264330:intron | 40.0% | |
| TTAACATGTTCCCCTTCACT+TGG | - | chr2_2:64248783-64248802 | None:intergenic | 40.0% | |
| TTGGCTTCACAATGTACCTT+CGG | + | chr2_2:64248886-64248905 | Msa0264330:CDS | 40.0% | |
| AAAGACACAATCGCAACACA+TGG | + | chr2_2:64248914-64248933 | Msa0264330:CDS | 40.0% | |
| GGTTCCAAGCTAAAAGCTTT+CGG | - | chr2_2:64249053-64249072 | None:intergenic | 40.0% | |
| !!! | AAAGCTTTTAGCTTGGAACC+TGG | + | chr2_2:64249053-64249072 | Msa0264330:CDS | 40.0% |
| ACATATTCAGGACCAAGAGA+AGG | + | chr2_2:64249110-64249129 | Msa0264330:CDS | 40.0% | |
| ATGTAATCCCTTCCTTCTCT+TGG | - | chr2_2:64249125-64249144 | None:intergenic | 40.0% | |
| !! | AAGGTTTTGGCAAGAAGGAA+AGG | + | chr2_2:64249156-64249175 | Msa0264330:CDS | 40.0% |
| !!! | TGGTTGGTGAGAGCTCTTTT+AGG | + | chr2_2:64247833-64247852 | Msa0264330:CDS | 45.0% |
| ! | TGAGAGCTCTTTTAGGCATC+TGG | + | chr2_2:64247840-64247859 | Msa0264330:CDS | 45.0% |
| TTGTGGATGCATACCTCTTG+AGG | + | chr2_2:64248239-64248258 | Msa0264330:intron | 45.0% | |
| ! | AAGAGGTATGCATCCTCAAG+AGG | - | chr2_2:64248255-64248274 | None:intergenic | 45.0% |
| ! | GAAGGAAGCACATATGCTTC+AGG | - | chr2_2:64248340-64248359 | None:intergenic | 45.0% |
| TGGCTTCACAATGTACCTTC+GGG | + | chr2_2:64248887-64248906 | Msa0264330:CDS | 45.0% | |
| ATTGTGTCTTTAGCACCCGA+AGG | - | chr2_2:64248905-64248924 | None:intergenic | 45.0% | |
| !! | ACAGCCGAAAGCTTTTAGCT+TGG | + | chr2_2:64249046-64249065 | Msa0264330:intron | 45.0% |
| ACCAAGGACCAAGAGATGAA+AGG | + | chr2_2:64249083-64249102 | Msa0264330:CDS | 45.0% | |
| CCAAGGACCAAGAGATGAAA+GGG | + | chr2_2:64249084-64249103 | Msa0264330:CDS | 45.0% | |
| ATTCAGGACCAAGAGAAGGA+AGG | + | chr2_2:64249114-64249133 | Msa0264330:CDS | 45.0% | |
| TTCAGGACCAAGAGAAGGAA+GGG | + | chr2_2:64249115-64249134 | Msa0264330:CDS | 45.0% | |
| !! | ATGGCAAGGTTTTGGCAAGA+AGG | + | chr2_2:64249151-64249170 | Msa0264330:CDS | 45.0% |
| !!! | TGGTTGGTGAGAGCTCTTTT+AGG | + | chr2_2:64247833-64247852 | Msa0264330:CDS | 45.0% |
| ! | TGAGAGCTCTTTTAGGCATC+TGG | + | chr2_2:64247840-64247859 | Msa0264330:CDS | 45.0% |
| TTGTGGATGCATACCTCTTG+AGG | + | chr2_2:64248239-64248258 | Msa0264330:intron | 45.0% | |
| ! | AAGAGGTATGCATCCTCAAG+AGG | - | chr2_2:64248255-64248274 | None:intergenic | 45.0% |
| ! | GAAGGAAGCACATATGCTTC+AGG | - | chr2_2:64248340-64248359 | None:intergenic | 45.0% |
| TGGCTTCACAATGTACCTTC+GGG | + | chr2_2:64248887-64248906 | Msa0264330:CDS | 45.0% | |
| ATTGTGTCTTTAGCACCCGA+AGG | - | chr2_2:64248905-64248924 | None:intergenic | 45.0% | |
| !! | ACAGCCGAAAGCTTTTAGCT+TGG | + | chr2_2:64249046-64249065 | Msa0264330:intron | 45.0% |
| ACCAAGGACCAAGAGATGAA+AGG | + | chr2_2:64249083-64249102 | Msa0264330:CDS | 45.0% | |
| CCAAGGACCAAGAGATGAAA+GGG | + | chr2_2:64249084-64249103 | Msa0264330:CDS | 45.0% | |
| ATTCAGGACCAAGAGAAGGA+AGG | + | chr2_2:64249114-64249133 | Msa0264330:CDS | 45.0% | |
| TTCAGGACCAAGAGAAGGAA+GGG | + | chr2_2:64249115-64249134 | Msa0264330:CDS | 45.0% | |
| !! | ATGGCAAGGTTTTGGCAAGA+AGG | + | chr2_2:64249151-64249170 | Msa0264330:CDS | 45.0% |
| AGCACTTATCTCCAAAGGCG+GGG | - | chr2_2:64247806-64247825 | None:intergenic | 50.0% | |
| CAGCACTTATCTCCAAAGGC+GGG | - | chr2_2:64247807-64247826 | None:intergenic | 50.0% | |
| CCAGCACTTATCTCCAAAGG+CGG | - | chr2_2:64247808-64247827 | None:intergenic | 50.0% | |
| CCACCAGCACTTATCTCCAA+AGG | - | chr2_2:64247811-64247830 | None:intergenic | 50.0% | |
| !! | CCTTTGGAGATAAGTGCTGG+TGG | + | chr2_2:64247808-64247827 | Msa0264330:CDS | 50.0% |
| !! | ATAAGTGCTGGTGGCTTGGT+TGG | + | chr2_2:64247817-64247836 | Msa0264330:CDS | 50.0% |
| GAAGGCAGCACATATGCTTC+AGG | - | chr2_2:64248177-64248196 | None:intergenic | 50.0% | |
| AATCGCAACACATGGCGCAA+AGG | + | chr2_2:64248922-64248941 | Msa0264330:CDS | 50.0% | |
| ! | ATCTCTTGGTCCTTGGTGCA+TGG | - | chr2_2:64249080-64249099 | None:intergenic | 50.0% |
| CCCTTTCATCTCTTGGTCCT+TGG | - | chr2_2:64249087-64249106 | None:intergenic | 50.0% | |
| AGCACTTATCTCCAAAGGCG+GGG | - | chr2_2:64247806-64247825 | None:intergenic | 50.0% | |
| CAGCACTTATCTCCAAAGGC+GGG | - | chr2_2:64247807-64247826 | None:intergenic | 50.0% | |
| CCAGCACTTATCTCCAAAGG+CGG | - | chr2_2:64247808-64247827 | None:intergenic | 50.0% | |
| CCACCAGCACTTATCTCCAA+AGG | - | chr2_2:64247811-64247830 | None:intergenic | 50.0% | |
| !! | CCTTTGGAGATAAGTGCTGG+TGG | + | chr2_2:64247808-64247827 | Msa0264330:CDS | 50.0% |
| !! | ATAAGTGCTGGTGGCTTGGT+TGG | + | chr2_2:64247817-64247836 | Msa0264330:CDS | 50.0% |
| GAAGGCAGCACATATGCTTC+AGG | - | chr2_2:64248177-64248196 | None:intergenic | 50.0% | |
| AATCGCAACACATGGCGCAA+AGG | + | chr2_2:64248922-64248941 | Msa0264330:CDS | 50.0% | |
| ! | ATCTCTTGGTCCTTGGTGCA+TGG | - | chr2_2:64249080-64249099 | None:intergenic | 50.0% |
| CCCTTTCATCTCTTGGTCCT+TGG | - | chr2_2:64249087-64249106 | None:intergenic | 50.0% | |
| ! | CCGCCTTTGGAGATAAGTGC+TGG | + | chr2_2:64247805-64247824 | Msa0264330:CDS | 55.0% |
| !! | GGAGATAAGTGCTGGTGGCT+TGG | + | chr2_2:64247813-64247832 | Msa0264330:CDS | 55.0% |
| ! | CCGCCTTTGGAGATAAGTGC+TGG | + | chr2_2:64247805-64247824 | Msa0264330:CDS | 55.0% |
| !! | GGAGATAAGTGCTGGTGGCT+TGG | + | chr2_2:64247813-64247832 | Msa0264330:CDS | 55.0% |
| AGGTGAGGATTCCCCGCCTT+TGG | + | chr2_2:64247792-64247811 | Msa0264330:CDS | 60.0% | |
| GGAACCTGGTCCATGCACCA+AGG | + | chr2_2:64249067-64249086 | Msa0264330:CDS | 60.0% | |
| ! | TGGTCCTTGGTGCATGGACC+AGG | - | chr2_2:64249074-64249093 | None:intergenic | 60.0% |
| AGGTGAGGATTCCCCGCCTT+TGG | + | chr2_2:64247792-64247811 | Msa0264330:CDS | 60.0% | |
| GGAACCTGGTCCATGCACCA+AGG | + | chr2_2:64249067-64249086 | Msa0264330:CDS | 60.0% | |
| ! | TGGTCCTTGGTGCATGGACC+AGG | - | chr2_2:64249074-64249093 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 64247787 | 64249193 | 64247787 | ID=Msa0264330;Name=Msa0264330 |
| chr2_2 | mRNA | 64247787 | 64249193 | 64247787 | ID=Msa0264330-mRNA-1;Parent=Msa0264330;Name=Msa0264330-mRNA-1;_AED=0.48;_eAED=0.64;_QI=0|0|0|1|1|1|3|0|96 |
| chr2_2 | exon | 64247787 | 64247872 | 64247787 | ID=Msa0264330-mRNA-1:exon:20019;Parent=Msa0264330-mRNA-1 |
| chr2_2 | exon | 64248883 | 64248943 | 64248883 | ID=Msa0264330-mRNA-1:exon:20020;Parent=Msa0264330-mRNA-1 |
| chr2_2 | exon | 64249050 | 64249193 | 64249050 | ID=Msa0264330-mRNA-1:exon:20021;Parent=Msa0264330-mRNA-1 |
| chr2_2 | CDS | 64247787 | 64247872 | 64247787 | ID=Msa0264330-mRNA-1:cds;Parent=Msa0264330-mRNA-1 |
| chr2_2 | CDS | 64248883 | 64248943 | 64248883 | ID=Msa0264330-mRNA-1:cds;Parent=Msa0264330-mRNA-1 |
| chr2_2 | CDS | 64249050 | 64249193 | 64249050 | ID=Msa0264330-mRNA-1:cds;Parent=Msa0264330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
