Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0178590 | G7IAS0 | 48.529 | 68 | 13 | 1 | 2 | 47 | 251 | 318 | 3.64e-11 | 67.0 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0011960 | Msa0178590 | 0.817446 | 3.284677e-52 | -8.615850e-47 |
Msa0012080 | Msa0178590 | 0.802706 | 4.939089e-49 | -8.615850e-47 |
Msa0013050 | Msa0178590 | -0.818573 | 1.826652e-52 | -8.615850e-47 |
Msa0015610 | Msa0178590 | 0.801005 | 1.104132e-48 | -8.615850e-47 |
Msa0017510 | Msa0178590 | 0.808724 | 2.690958e-50 | -8.615850e-47 |
Msa0024210 | Msa0178590 | -0.800568 | 1.355899e-48 | -8.615850e-47 |
Msa0025730 | Msa0178590 | 0.803332 | 3.667392e-49 | -8.615850e-47 |
Msa0029270 | Msa0178590 | 0.818675 | 1.731539e-52 | -8.615850e-47 |
Msa0032430 | Msa0178590 | 0.801788 | 7.632914e-49 | -8.615850e-47 |
Msa0032580 | Msa0178590 | 0.814499 | 1.493488e-51 | -8.615850e-47 |
Msa0040690 | Msa0178590 | 0.804390 | 2.210712e-49 | -8.615850e-47 |
Msa0054480 | Msa0178590 | 0.816055 | 6.736726e-52 | -8.615850e-47 |
Msa0061080 | Msa0178590 | 0.800914 | 1.152300e-48 | -8.615850e-47 |
Msa0063530 | Msa0178590 | 0.810569 | 1.080130e-50 | -8.615850e-47 |
Msa0078900 | Msa0178590 | 0.808921 | 2.441996e-50 | -8.615850e-47 |
Msa0089660 | Msa0178590 | 0.830318 | 3.142332e-55 | -8.615850e-47 |
Msa0091210 | Msa0178590 | -0.802346 | 5.859322e-49 | -8.615850e-47 |
Msa0091250 | Msa0178590 | -0.801659 | 8.113309e-49 | -8.615850e-47 |
Msa0105620 | Msa0178590 | 0.801937 | 7.112370e-49 | -8.615850e-47 |
Msa0127050 | Msa0178590 | 0.823949 | 1.051605e-53 | -8.615850e-47 |
Msa0135380 | Msa0178590 | 0.800699 | 1.275175e-48 | -8.615850e-47 |
Msa0136070 | Msa0178590 | 0.820257 | 7.547221e-53 | -8.615850e-47 |
Msa0142660 | Msa0178590 | 0.803952 | 2.726684e-49 | -8.615850e-47 |
Msa0150820 | Msa0178590 | 0.811102 | 8.281689e-51 | -8.615850e-47 |
Msa0157290 | Msa0178590 | 0.808838 | 2.543639e-50 | -8.615850e-47 |
Msa0160550 | Msa0178590 | 0.846489 | 2.103020e-59 | -8.615850e-47 |
Msa0169310 | Msa0178590 | 0.810201 | 1.296647e-50 | -8.615850e-47 |
Msa0171540 | Msa0178590 | 0.809947 | 1.470728e-50 | -8.615850e-47 |
Msa0172070 | Msa0178590 | 0.801118 | 1.047101e-48 | -8.615850e-47 |
Msa0172970 | Msa0178590 | 0.804267 | 2.344523e-49 | -8.615850e-47 |
Msa0178590 | Msa0178640 | 0.964187 | 5.185631e-123 | -8.615850e-47 |
Msa0178590 | Msa0184780 | 0.809841 | 1.549914e-50 | -8.615850e-47 |
Msa0178590 | Msa0187120 | 0.807701 | 4.445079e-50 | -8.615850e-47 |
Msa0178590 | Msa0195460 | 0.800662 | 1.297619e-48 | -8.615850e-47 |
Msa0178590 | Msa0220720 | 0.827536 | 1.482311e-54 | -8.615850e-47 |
Msa0178590 | Msa0222890 | 0.831043 | 2.087321e-55 | -8.615850e-47 |
Msa0178590 | Msa0228070 | 0.821395 | 4.131970e-53 | -8.615850e-47 |
Msa0178590 | Msa0237260 | 0.800721 | 1.261814e-48 | -8.615850e-47 |
Msa0178590 | Msa0241390 | 0.801803 | 7.579548e-49 | -8.615850e-47 |
Msa0178590 | Msa0255080 | 0.802679 | 5.004487e-49 | -8.615850e-47 |
Msa0178590 | Msa0260680 | 0.800284 | 1.548870e-48 | -8.615850e-47 |
Msa0178590 | Msa0262310 | 0.812287 | 4.575012e-51 | -8.615850e-47 |
Msa0178590 | Msa0264150 | 0.818034 | 2.419984e-52 | -8.615850e-47 |
Msa0178590 | Msa0279240 | 0.801330 | 9.473782e-49 | -8.615850e-47 |
Msa0178590 | Msa0280090 | 0.825871 | 3.700467e-54 | -8.615850e-47 |
Msa0178590 | Msa0289250 | 0.837096 | 6.358286e-57 | -8.615850e-47 |
Msa0178590 | Msa0294560 | -0.801512 | 8.696376e-49 | -8.615850e-47 |
Msa0178590 | Msa0299870 | 0.816929 | 4.291045e-52 | -8.615850e-47 |
Msa0178590 | Msa0306210 | -0.804896 | 1.733056e-49 | -8.615850e-47 |
Msa0178590 | Msa0309750 | 0.807720 | 4.404224e-50 | -8.615850e-47 |
Msa0178590 | Msa0309770 | 0.811271 | 7.611109e-51 | -8.615850e-47 |
Msa0178590 | Msa0318980 | 0.812664 | 3.784448e-51 | -8.615850e-47 |
Msa0178590 | Msa0336420 | 0.819959 | 8.829368e-53 | -8.615850e-47 |
Msa0178590 | Msa0337240 | 0.825245 | 5.207538e-54 | -8.615850e-47 |
Msa0178590 | Msa0337620 | 0.800462 | 1.425255e-48 | -8.615850e-47 |
Msa0178590 | Msa0340450 | 0.805324 | 1.410423e-49 | -8.615850e-47 |
Msa0178590 | Msa0341030 | 0.828948 | 6.769319e-55 | -8.615850e-47 |
Msa0178590 | Msa0383800 | 0.811506 | 6.767924e-51 | -8.615850e-47 |
Msa0178590 | Msa0385580 | 0.825738 | 3.980508e-54 | -8.615850e-47 |
Msa0178590 | Msa0397750 | 0.806093 | 9.723163e-50 | -8.615850e-47 |
Msa0178590 | Msa0398710 | 0.803000 | 4.294615e-49 | -8.615850e-47 |
Msa0178590 | Msa0421780 | -0.804806 | 1.810229e-49 | -8.615850e-47 |
Msa0178590 | Msa0432770 | 0.800097 | 1.691268e-48 | -8.615850e-47 |
Msa0178590 | Msa0434180 | 0.802248 | 6.138483e-49 | -8.615850e-47 |
Msa0178590 | Msa0479970 | 0.802371 | 5.790440e-49 | -8.615850e-47 |
Msa0178590 | Msa0481530 | 0.819504 | 1.122058e-52 | -8.615850e-47 |
Msa0178590 | Msa0487800 | 0.819320 | 1.235575e-52 | -8.615850e-47 |
Msa0178590 | Msa0529890 | 0.821535 | 3.834067e-53 | -8.615850e-47 |
Msa0178590 | Msa0547320 | 0.814442 | 1.537783e-51 | -8.615850e-47 |
Msa0178590 | Msa0555450 | 0.808797 | 2.595936e-50 | -8.615850e-47 |
Msa0178590 | Msa0569500 | 0.803673 | 3.115628e-49 | -8.615850e-47 |
Msa0178590 | Msa0585560 | 0.820421 | 6.920894e-53 | -8.615850e-47 |
Msa0178590 | Msa0592440 | 0.826809 | 2.212020e-54 | -8.615850e-47 |
Msa0178590 | Msa0607050 | 0.802940 | 4.419800e-49 | -8.615850e-47 |
Msa0178590 | Msa0610430 | 0.852887 | 3.437447e-61 | -8.615850e-47 |
Msa0178590 | Msa0617640 | 0.819486 | 1.132545e-52 | -8.615850e-47 |
Msa0178590 | Msa0621490 | 0.807100 | 5.961037e-50 | -8.615850e-47 |
Msa0178590 | Msa0625720 | 0.818826 | 1.600165e-52 | -8.615850e-47 |
Msa0178590 | Msa0643180 | 0.808803 | 2.587563e-50 | -8.615850e-47 |
Msa0178590 | Msa0643560 | 0.807872 | 4.088007e-50 | -8.615850e-47 |
Msa0178590 | Msa0647450 | -0.805557 | 1.260613e-49 | -8.615850e-47 |
Msa0178590 | Msa0657580 | 0.801933 | 7.125236e-49 | -8.615850e-47 |
Msa0178590 | Msa0661190 | -0.818069 | 2.375614e-52 | -8.615850e-47 |
Msa0178590 | Msa0663390 | 0.824339 | 8.518057e-54 | -8.615850e-47 |
Msa0178590 | Msa0673460 | 0.800623 | 1.321508e-48 | -8.615850e-47 |
Msa0178590 | Msa0682840 | 0.818248 | 2.164706e-52 | -8.615850e-47 |
Msa0178590 | Msa0689260 | 0.822615 | 2.154311e-53 | -8.615850e-47 |
Msa0178590 | Msa0692830 | 0.807857 | 4.117405e-50 | -8.615850e-47 |
Msa0178590 | Msa0692950 | 0.804166 | 2.460937e-49 | -8.615850e-47 |
Msa0178590 | Msa0698920 | 0.807682 | 4.487180e-50 | -8.615850e-47 |
Msa0178590 | Msa0709500 | 0.811277 | 7.586464e-51 | -8.615850e-47 |
Msa0178590 | Msa0715700 | 0.825828 | 3.788351e-54 | -8.615850e-47 |
Msa0178590 | Msa0716840 | 0.837293 | 5.661646e-57 | -8.615850e-47 |
Msa0178590 | Msa0743720 | 0.814814 | 1.272097e-51 | -8.615850e-47 |
Msa0178590 | Msa0743950 | 0.817435 | 3.302266e-52 | -8.615850e-47 |
Msa0178590 | Msa0745790 | 0.808251 | 3.395436e-50 | -8.615850e-47 |
Msa0178590 | Msa0769920 | 0.814145 | 1.788592e-51 | -8.615850e-47 |
Msa0178590 | Msa0790660 | -0.842841 | 2.021004e-58 | -8.615850e-47 |
Msa0178590 | Msa0790850 | 0.814531 | 1.469492e-51 | -8.615850e-47 |
Msa0178590 | Msa0793800 | 0.839753 | 1.312579e-57 | -8.615850e-47 |
Msa0178590 | Msa0794670 | 0.800650 | 1.304920e-48 | -8.615850e-47 |
Msa0178590 | Msa0808270 | 0.842845 | 2.015546e-58 | -8.615850e-47 |
Msa0178590 | Msa0824680 | 0.807547 | 4.791874e-50 | -8.615850e-47 |
Msa0178590 | Msa0864250 | 0.812833 | 3.474429e-51 | -8.615850e-47 |
Msa0178590 | Msa0871270 | 0.801796 | 7.604580e-49 | -8.615850e-47 |
Msa0178590 | Msa0876200 | 0.804757 | 1.853602e-49 | -8.615850e-47 |
Msa0178590 | Msa0880140 | 0.806672 | 7.340551e-50 | -8.615850e-47 |
Msa0178590 | Msa0902760 | 0.804571 | 2.026706e-49 | -8.615850e-47 |
Msa0178590 | Msa0920870 | 0.809448 | 1.883168e-50 | -8.615850e-47 |
Msa0178590 | Msa0938220 | 0.823728 | 1.184808e-53 | -8.615850e-47 |
Msa0178590 | Msa0947660 | 0.810452 | 1.144380e-50 | -8.615850e-47 |
Msa0178590 | Msa0959360 | 0.834598 | 2.731836e-56 | -8.615850e-47 |
Msa0178590 | Msa0965490 | 0.808526 | 2.966217e-50 | -8.615850e-47 |
Msa0178590 | Msa0968680 | 0.811944 | 5.432717e-51 | -8.615850e-47 |
Msa0178590 | Msa0969810 | 0.805199 | 1.497893e-49 | -8.615850e-47 |
Msa0178590 | Msa0974070 | 0.813536 | 2.435809e-51 | -8.615850e-47 |
Msa0178590 | Msa0978250 | 0.811353 | 7.306374e-51 | -8.615850e-47 |
Msa0178590 | Msa0993290 | 0.804124 | 2.510611e-49 | -8.615850e-47 |
Msa0178590 | Msa0999970 | 0.811646 | 6.308907e-51 | -8.615850e-47 |
Msa0178590 | Msa1009820 | 0.806131 | 9.545911e-50 | -8.615850e-47 |
Msa0178590 | Msa1013400 | 0.802292 | 6.011013e-49 | -8.615850e-47 |
Msa0178590 | Msa1014540 | 0.801259 | 9.795696e-49 | -8.615850e-47 |
Msa0178590 | Msa1040400 | 0.811646 | 6.309113e-51 | -8.615850e-47 |
Msa0178590 | Msa1051200 | 0.832470 | 9.280212e-56 | -8.615850e-47 |
Msa0178590 | Msa1058710 | 0.808070 | 3.709444e-50 | -8.615850e-47 |
Msa0178590 | Msa1077030 | 0.801283 | 9.687148e-49 | -8.615850e-47 |
Msa0178590 | Msa1087710 | 0.830338 | 3.106855e-55 | -8.615850e-47 |
Msa0178590 | Msa1089020 | 0.801657 | 8.120801e-49 | -8.615850e-47 |
Msa0178590 | Msa1093530 | 0.805063 | 1.599485e-49 | -8.615850e-47 |
Msa0178590 | Msa1109680 | 0.801672 | 8.063070e-49 | -8.615850e-47 |
Msa0178590 | Msa1113170 | 0.801101 | 1.055234e-48 | -8.615850e-47 |
Msa0178590 | Msa1125760 | 0.807253 | 5.531766e-50 | -8.615850e-47 |
Msa0178590 | Msa1137700 | 0.814558 | 1.449111e-51 | -8.615850e-47 |
Msa0178590 | Msa1143930 | -0.808571 | 2.900864e-50 | -8.615850e-47 |
Msa0178590 | Msa1147900 | 0.819313 | 1.239874e-52 | -8.615850e-47 |
Msa0178590 | Msa1171360 | 0.810994 | 8.739729e-51 | -8.615850e-47 |
Msa0178590 | Msa1253020 | 0.819415 | 1.175205e-52 | -8.615850e-47 |
Msa0178590 | Msa1259490 | -0.826246 | 3.014744e-54 | -8.615850e-47 |
Msa0178590 | Msa1282580 | -0.804701 | 1.903962e-49 | -8.615850e-47 |
Msa0178590 | Msa1299180 | -0.825836 | 3.772031e-54 | -8.615850e-47 |
Msa0178590 | Msa1302850 | 0.805193 | 1.502230e-49 | -8.615850e-47 |
Msa0178590 | Msa1332040 | -0.814268 | 1.679522e-51 | -8.615850e-47 |
Msa0178590 | Msa1336570 | 0.800542 | 1.372765e-48 | -8.615850e-47 |
Msa0178590 | Msa1348490 | 0.808137 | 3.589312e-50 | -8.615850e-47 |
Msa0178590 | Msa1358250 | 0.823163 | 1.606221e-53 | -8.615850e-47 |
Msa0178590 | Msa1359040 | 0.813835 | 2.092762e-51 | -8.615850e-47 |
Msa0178590 | Msa1386780 | 0.804920 | 1.713464e-49 | -8.615850e-47 |
Msa0178590 | Msa1389800 | 0.810894 | 9.186750e-51 | -8.615850e-47 |
Msa0178590 | Msa1392780 | 0.818145 | 2.283989e-52 | -8.615850e-47 |
Msa0178590 | Msa1394290 | 0.812708 | 3.700139e-51 | -8.615850e-47 |
Msa0178590 | Msa1394500 | 0.801474 | 8.854005e-49 | -8.615850e-47 |
Msa0178590 | Msa1410100 | 0.847350 | 1.222439e-59 | -8.615850e-47 |
Msa0178590 | Msa1416150 | 0.813300 | 2.744344e-51 | -8.615850e-47 |
Msa0178590 | Msa1426030 | 0.809861 | 1.534618e-50 | -8.615850e-47 |
Msa0178590 | Msa1444310 | 0.809747 | 1.624111e-50 | -8.615850e-47 |
Msa0178590 | Msa1453780 | -0.803281 | 3.757401e-49 | -8.615850e-47 |
Msa0178590 | Msa1455490 | 0.809276 | 2.049976e-50 | -8.615850e-47 |
Msa0178590 | Msa1457920 | 0.828276 | 9.835049e-55 | -8.615850e-47 |
Msa0178590 | Msa1466540 | 0.843948 | 1.023311e-58 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0178590 | MtrunA17_Chr1g0208371 | 48.529 | 68 | 13 | 1 | 2 | 47 | 251 | 318 | 7.02e-15 | 67.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 14 sgRNAs with CRISPR-Local
Find 17 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ATATATTGTACTTTGATTAC+TGG | 0.275088 | 1_4:-65946208 | Msa0178590:CDS |
TGAGCCTGACGCGGTTACTA+TGG | 0.420376 | 1_4:-65946327 | Msa0178590:intron |
TGTACTTTGATTACTGGTCT+TGG | 0.428132 | 1_4:-65946202 | Msa0178590:CDS |
TGTAGGGAGATGAAGGATGA+TGG | 0.433447 | 1_4:-65946353 | Msa0178590:intron |
TTGATTACTGGTCTTGGTAA+TGG | 0.438096 | 1_4:-65946196 | Msa0178590:CDS |
TGAAGTTTGTAGGGAGATGA+AGG | 0.454618 | 1_4:-65946360 | Msa0178590:intron |
TATACCATAGTAACCGCGTC+AGG | 0.499602 | 1_4:+65946323 | None:intergenic |
TTTATCATGAGATACAATCA+AGG | 0.522069 | 1_4:-65946252 | Msa0178590:intron |
GCTATGCAAAATGAAGAAGA+AGG | 0.531029 | 1_4:-65946157 | Msa0178590:CDS |
CTATGCAAAATGAAGAAGAA+GGG | 0.588304 | 1_4:-65946156 | Msa0178590:CDS |
AAATGAAGAAGAAGGGGCAA+AGG | 0.592568 | 1_4:-65946149 | Msa0178590:CDS |
GTACAATATATATGAAGACT+AGG | 0.609451 | 1_4:+65946220 | None:intergenic |
TCTTGGTAATGGTAGTCGAA+TGG | 0.610381 | 1_4:-65946185 | Msa0178590:CDS |
TATGCAAAATGAAGAAGAAG+GGG | 0.633838 | 1_4:-65946155 | Msa0178590:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATATTGTACTTTGATTAC+TGG | - | chr1_4:65946261-65946280 | Msa0178590:intron | 20.0% |
! | AATCATCAATGCATATTGTA+TGG | - | chr1_4:65946168-65946187 | Msa0178590:CDS | 25.0% |
! | TTTATCATGAGATACAATCA+AGG | - | chr1_4:65946217-65946236 | Msa0178590:CDS | 25.0% |
! | GTACAATATATATGAAGACT+AGG | + | chr1_4:65946252-65946271 | None:intergenic | 25.0% |
CTATGCAAAATGAAGAAGAA+GGG | - | chr1_4:65946313-65946332 | Msa0178590:intron | 30.0% | |
TATGCAAAATGAAGAAGAAG+GGG | - | chr1_4:65946314-65946333 | Msa0178590:intron | 30.0% | |
! | TGTACTTTGATTACTGGTCT+TGG | - | chr1_4:65946267-65946286 | Msa0178590:intron | 35.0% |
!! | TTGATTACTGGTCTTGGTAA+TGG | - | chr1_4:65946273-65946292 | Msa0178590:intron | 35.0% |
GCTATGCAAAATGAAGAAGA+AGG | - | chr1_4:65946312-65946331 | Msa0178590:intron | 35.0% | |
!!! | GCGTTCTCTCTTACATTTTT+TGG | - | chr1_4:65946351-65946370 | Msa0178590:CDS | 35.0% |
TGAAGTTTGTAGGGAGATGA+AGG | - | chr1_4:65946109-65946128 | Msa0178590:CDS | 40.0% | |
!! | TCTTGGTAATGGTAGTCGAA+TGG | - | chr1_4:65946284-65946303 | Msa0178590:intron | 40.0% |
AAATGAAGAAGAAGGGGCAA+AGG | - | chr1_4:65946320-65946339 | Msa0178590:intron | 40.0% | |
TGTAGGGAGATGAAGGATGA+TGG | - | chr1_4:65946116-65946135 | Msa0178590:CDS | 45.0% | |
TATACCATAGTAACCGCGTC+AGG | + | chr1_4:65946149-65946168 | None:intergenic | 45.0% | |
!!! | TGATGGTTTTGAGCCTGACG+CGG | - | chr1_4:65946133-65946152 | Msa0178590:CDS | 50.0% |
TGAGCCTGACGCGGTTACTA+TGG | - | chr1_4:65946142-65946161 | Msa0178590:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1_4 | gene | 65946108 | 65946383 | 65946108 | ID=Msa0178590;Name=Msa0178590 |
chr1_4 | mRNA | 65946108 | 65946383 | 65946108 | ID=Msa0178590-mRNA-1;Parent=Msa0178590;Name=Msa0178590-mRNA-1;_AED=0.62;_eAED=0.66;_QI=0|0|0|1|0|0|3|0|67 |
chr1_4 | exon | 65946379 | 65946383 | 65946379 | ID=Msa0178590-mRNA-1:exon:21528;Parent=Msa0178590-mRNA-1 |
chr1_4 | exon | 65946328 | 65946370 | 65946328 | ID=Msa0178590-mRNA-1:exon:21527;Parent=Msa0178590-mRNA-1 |
chr1_4 | exon | 65946108 | 65946263 | 65946108 | ID=Msa0178590-mRNA-1:exon:21526;Parent=Msa0178590-mRNA-1 |
chr1_4 | CDS | 65946379 | 65946383 | 65946379 | ID=Msa0178590-mRNA-1:cds;Parent=Msa0178590-mRNA-1 |
chr1_4 | CDS | 65946328 | 65946370 | 65946328 | ID=Msa0178590-mRNA-1:cds;Parent=Msa0178590-mRNA-1 |
chr1_4 | CDS | 65946108 | 65946263 | 65946108 | ID=Msa0178590-mRNA-1:cds;Parent=Msa0178590-mRNA-1 |
Gene Sequence |
Protein sequence |