AlfalfaGEDB | Msa0222620

M. sativa cultivar zhongmu-4 / Msa0222620

KEGG: K11254
GO: -
PFAM: PF15511.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0222620	RCV35100.1	100.000	103	0	0	1	103	130	232	4.31e-66	216

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0222620	sp\|P0CG89\|H4_SOYBN	100.000	103	0	0	1	103	1	103	2.14e-66	204

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0222620	A0A251US17	99.048	105	1	0	1	105	1	105	2.63e-65	208

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002490	Msa0222620	0.811245	7.708994e-51	-8.615850e-47
Msa0003700	Msa0222620	0.834860	2.347522e-56	-8.615850e-47
Msa0003890	Msa0222620	0.839971	1.151362e-57	-8.615850e-47
Msa0004860	Msa0222620	0.818549	1.849455e-52	-8.615850e-47
Msa0004920	Msa0222620	0.829343	5.427384e-55	-8.615850e-47
Msa0006380	Msa0222620	0.824794	6.653640e-54	-8.615850e-47
Msa0008670	Msa0222620	0.819794	9.629823e-53	-8.615850e-47
Msa0011170	Msa0222620	0.809403	1.925526e-50	-8.615850e-47
Msa0011960	Msa0222620	0.831710	1.430177e-55	-8.615850e-47
Msa0014710	Msa0222620	0.834024	3.806922e-56	-8.615850e-47

Showing 1 to 10 of 824 entries

Previous1 2 3 4 5…83Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	q. start	q. end	s. start	s. end	e-value	bit score
Msa0222620	MtrunA17_Chr4g0072411	100.000	103	1	103	59	161	1.26e-67	207
Msa0222620	MtrunA17_Chr5g0425951	100.000	103	1	103	1	103	1.58e-67	204
Msa0222620	MtrunA17_Chr4g0030431	100.000	103	1	103	1	103	1.58e-67	204
Msa0222620	MtrunA17_Chr3g0100121	100.000	103	1	103	1	103	1.58e-67	204
Msa0222620	MtrunA17_Chr3g0113681	100.000	103	1	103	1	103	1.58e-67	204
Msa0222620	MtrunA17_Chr2g0327641	100.000	103	1	103	1	103	1.58e-67	204
Msa0222620	MtrunA17_Chr3g0103351	100.000	103	1	103	1	103	1.58e-67	204
Msa0222620	MtrunA17_Chr8g0352791	100.000	103	1	103	1	103	1.58e-67	204
Msa0222620	MtrunA17_Chr3g0103821	100.000	103	1	103	1	103	1.58e-67	204
Msa0222620	MtrunA17_Chr3g0104031	100.000	103	1	103	1	103	1.58e-67	204

Showing 1 to 10 of 67 entries

Previous1 2 3 4 5 6 7Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	q. start	q. end	s. start	s. end	e-value	bit score
Msa0222620	AT3G53730.1	100.000	103	1	103	1	103	2.18e-67	204
Msa0222620	AT1G07820.2	100.000	103	1	103	1	103	2.18e-67	204
Msa0222620	AT1G07820.1	100.000	103	1	103	1	103	2.18e-67	204
Msa0222620	AT5G59690.1	100.000	103	1	103	1	103	2.18e-67	204
Msa0222620	AT3G46320.1	100.000	103	1	103	1	103	2.18e-67	204
Msa0222620	AT2G28740.1	100.000	103	1	103	1	103	2.18e-67	204
Msa0222620	AT1G07660.1	100.000	103	1	103	1	103	2.18e-67	204
Msa0222620	AT3G45930.1	100.000	103	1	103	1	103	2.18e-67	204
Msa0222620	AT5G59970.1	100.000	103	1	103	1	103	2.18e-67	204
Msa0222620	AT5G59970.2	100.000	103	1	103	1	103	2.18e-67	204

Showing 1 to 10 of 34 entries

Previous1 2 3 4Next

Find 66 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTTACTCATCACTGTCG+GGG	0.668930	2_1:+71886048	None:intergenic
AAGATGTCTGGACGTGGAAA+AGG	0.490201	2_1:-71888239	Msa0222620:CDS
AAGGACTCTTTATGGATTTG+GGG	0.603730	2_1:-71887952	Msa0222620:CDS
ACTCTTGGCTTGTGAAACAC+AGG	0.642689	2_1:-71886916	Msa0222620:CDS
AGACAAGGAAGGACTCTTTA+TGG	0.217305	2_1:-71887960	Msa0222620:CDS
AGCTGAGCTTACAGATGGGT+TGG	0.566358	2_1:-71885915	Msa0222620:CDS
AGGAAATGCACGCATCCTTT+AGG	0.367709	2_1:+71885836	None:intergenic
AGGACTCTTTATGGATTTGG+GGG	0.645439	2_1:-71887951	Msa0222620:intron
AGGAGCAAAACGACACCGTA+AGG	0.575994	2_1:-71888195	Msa0222620:CDS
AGGTGGAAAGGGATTGGGAA+AGG	0.506594	2_1:-71888219	Msa0222620:CDS

Showing 1 to 10 of 66 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATAGGTAGTTAACTGTTTCA+TGG	-	chr2_1:71886178-71886197	Msa0222620:intron	30.0%
TTAAAATTCAATTGCAGGCT+TGG	+	chr2_1:71886306-71886325	None:intergenic	30.0%
TTCCATATATGACGAATTGA+GGG	+	chr2_1:71886453-71886472	None:intergenic	30.0%
ATTCCATATATGACGAATTG+AGG	+	chr2_1:71886454-71886473	None:intergenic	30.0%
CAAATACTATGTGATTGATG+AGG	-	chr2_1:71886649-71886668	Msa0222620:intron	30.0%
ATTGATGAGGATGTTATTGT+GGG	-	chr2_1:71886662-71886681	Msa0222620:intron	30.0%
TCACAACTGAAGATGTTTAA+AGG	+	chr2_1:71886690-71886709	None:intergenic	30.0%
AGATTTCTAAATTCTCCAGA+TGG	+	chr2_1:71886793-71886812	None:intergenic	30.0%
ATCTGGAGAATTTAGAAATC+TGG	-	chr2_1:71886792-71886811	Msa0222620:intron	30.0%
TCTGGAGAATTTAGAAATCT+GGG	-	chr2_1:71886793-71886812	Msa0222620:intron	30.0%

Showing 1 to 10 of 169 entries

Previous1 2 3 4 5…17Next

Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	71885703	71888258	71885703	ID=Msa0222620;Name=Msa0222620
chr2_1	mRNA	71885703	71888258	71885703	ID=Msa0222620-mRNA-1;Parent=Msa0222620;Name=Msa0222620-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0\|0\|0\|0.66\|1\|1\|3\|0\|272
chr2_1	exon	71887952	71888258	71887952	ID=Msa0222620-mRNA-1:exon:20734;Parent=Msa0222620-mRNA-1
chr2_1	exon	71886890	71886989	71886890	ID=Msa0222620-mRNA-1:exon:20733;Parent=Msa0222620-mRNA-1
chr2_1	exon	71885703	71886114	71885703	ID=Msa0222620-mRNA-1:exon:20732;Parent=Msa0222620-mRNA-1
chr2_1	CDS	71887952	71888258	71887952	ID=Msa0222620-mRNA-1:cds;Parent=Msa0222620-mRNA-1
chr2_1	CDS	71886890	71886989	71886890	ID=Msa0222620-mRNA-1:cds;Parent=Msa0222620-mRNA-1
chr2_1	CDS	71885703	71886114	71885703	ID=Msa0222620-mRNA-1:cds;Parent=Msa0222620-mRNA-1

Gene Sequence

>Msa0222620

ATGTCTGGACGTGGAAAAGGTGGAAAGGGATTGGGAAAGGGAGGAGCAAAACGACACCGTAAGGTGCTTCGTGATAACATTCAAGGAATAACGAAGCCTGCGATTCGTCGTTTGGCACGTAGAGGAGGAGTGAAGCGTATAAGCGGTTTGATCTACGAAGAGACACGTGGCGTGTTGAAGATCTTTTTGGAGAATGTTATTCGTGATGCGGTTACTTACACAGAGCACGCTAGGAGAAAGACTGTTACTGCTATGGATGTTGTTTATGCTTTGAAGAGACAAGGAAGGACTCTTTATGGATTTGGGGGATGTTGCGATGGTATTACTTATTGGGGTATGGTCATTAAAGTAGTGTGGTACTCTTGGCTTGTGAAACACAGGAAATTTGTGTTGATCCTACTCTTTCTTCTAAGAAAGCAAACCATTGAATCATTCAACAATGTCAAGCTTACCCCGACAGTGATGAGTAAATTTCCAGCTCTCAACGGCATTGGTATCTCTATGGTTATAGCAGAAGTGGGAGCGAAGGGAAGCTACTCTATGCACACACATTATGTTGCCACGGAATTTTTGATCATGGTGGCAGCTGAGCTTACAGATGGGTTGGTGATAGATGAAGAAGTGTTTGAAAAAACTATTAAAGCTGGAGATGTTATTGTGTTTCCTAAAGGATGCGTGCATTTCCTTGTCAACTCTGGTGCCAGAACAGCGGTTGCTTTTTCAGCTTTCACCACTGAAAATCCCGCTGGTTTCCAGTTTGCTGGCAACACCAAACCCTCCACTGTTACTCAAAAGACAGCTCTTCTTGATTTTGAATAA

Protein sequence

>Msa0222620

MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGGCCDGITYWGMVIKVVWYSWLVKHRKFVLILLFLLRKQTIESFNNVKLTPTVMSKFPALNGIGISMVIAEVGAKGSYSMHTHYVATEFLIMVAAELTDGLVIDEEVFEKTIKAGDVIVFPKGCVHFLVNSGARTAVAFSAFTTENPAGFQFAGNTKPSTVTQKTALLDFE*