Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015140 | Msa1442700 | 0.819027 | 1.440769e-52 | -8.615850e-47 |
| Msa0026150 | Msa1442700 | 0.808133 | 3.597740e-50 | -8.615850e-47 |
| Msa0032260 | Msa1442700 | 0.809193 | 2.135470e-50 | -8.615850e-47 |
| Msa0033980 | Msa1442700 | 0.816813 | 4.557711e-52 | -8.615850e-47 |
| Msa0037160 | Msa1442700 | 0.801100 | 1.056110e-48 | -8.615850e-47 |
| Msa0040450 | Msa1442700 | 0.805261 | 1.453716e-49 | -8.615850e-47 |
| Msa0044540 | Msa1442700 | -0.808432 | 3.105724e-50 | -8.615850e-47 |
| Msa0047160 | Msa1442700 | 0.815164 | 1.063599e-51 | -8.615850e-47 |
| Msa0057140 | Msa1442700 | 0.814050 | 1.877069e-51 | -8.615850e-47 |
| Msa0081930 | Msa1442700 | 0.802488 | 5.477779e-49 | -8.615850e-47 |
| Msa0089660 | Msa1442700 | 0.806293 | 8.823756e-50 | -8.615850e-47 |
| Msa0094470 | Msa1442700 | 0.807952 | 3.931539e-50 | -8.615850e-47 |
| Msa0097590 | Msa1442700 | 0.804698 | 1.906723e-49 | -8.615850e-47 |
| Msa0097610 | Msa1442700 | 0.801925 | 7.155023e-49 | -8.615850e-47 |
| Msa0109690 | Msa1442700 | 0.800659 | 1.299389e-48 | -8.615850e-47 |
| Msa0113750 | Msa1442700 | 0.800828 | 1.200275e-48 | -8.615850e-47 |
| Msa1355700 | Msa1442700 | 0.817352 | 3.447900e-52 | -8.615850e-47 |
| Msa1359390 | Msa1442700 | 0.806195 | 9.256039e-50 | -8.615850e-47 |
| Msa1388860 | Msa1442700 | 0.804910 | 1.721521e-49 | -8.615850e-47 |
| Msa1410100 | Msa1442700 | 0.814969 | 1.174873e-51 | -8.615850e-47 |
| Msa1423350 | Msa1442700 | 0.801527 | 8.633171e-49 | -8.615850e-47 |
| Msa1437270 | Msa1442700 | 0.808523 | 2.970517e-50 | -8.615850e-47 |
| Msa1442700 | Msa1443850 | 0.800507 | 1.395380e-48 | -8.615850e-47 |
| Msa1442700 | Msa1444310 | 0.811693 | 6.160944e-51 | -8.615850e-47 |
| Msa0603670 | Msa1442700 | 0.819915 | 9.036454e-53 | -8.615850e-47 |
| Msa0609000 | Msa1442700 | 0.809784 | 1.594691e-50 | -8.615850e-47 |
| Msa0610500 | Msa1442700 | 0.801204 | 1.005213e-48 | -8.615850e-47 |
| Msa0619210 | Msa1442700 | 0.814328 | 1.629153e-51 | -8.615850e-47 |
| Msa0619920 | Msa1442700 | 0.808203 | 3.475994e-50 | -8.615850e-47 |
| Msa0641140 | Msa1442700 | 0.806848 | 6.738581e-50 | -8.615850e-47 |
| Msa0644660 | Msa1442700 | 0.825648 | 4.180395e-54 | -8.615850e-47 |
| Msa0651150 | Msa1442700 | 0.804513 | 2.083866e-49 | -8.615850e-47 |
| Msa0682090 | Msa1442700 | 0.807288 | 5.437317e-50 | -8.615850e-47 |
| Msa0682140 | Msa1442700 | 0.806911 | 6.535887e-50 | -8.615850e-47 |
| Msa0682900 | Msa1442700 | 0.800223 | 1.594359e-48 | -8.615850e-47 |
| Msa0691900 | Msa1442700 | 0.828101 | 1.084089e-54 | -8.615850e-47 |
| Msa0694840 | Msa1442700 | 0.817143 | 3.841689e-52 | -8.615850e-47 |
| Msa0701920 | Msa1442700 | 0.821490 | 3.928125e-53 | -8.615850e-47 |
| Msa0706390 | Msa1442700 | 0.800663 | 1.296820e-48 | -8.615850e-47 |
| Msa0706400 | Msa1442700 | 0.818440 | 1.958478e-52 | -8.615850e-47 |
| Msa0716840 | Msa1442700 | 0.803814 | 2.912705e-49 | -8.615850e-47 |
| Msa0750430 | Msa1442700 | 0.802339 | 5.879693e-49 | -8.615850e-47 |
| Msa0770200 | Msa1442700 | 0.820791 | 5.691030e-53 | -8.615850e-47 |
| Msa0780880 | Msa1442700 | 0.801317 | 9.531513e-49 | -8.615850e-47 |
| Msa0791240 | Msa1442700 | 0.818636 | 1.767260e-52 | -8.615850e-47 |
| Msa0791820 | Msa1442700 | 0.807959 | 3.917828e-50 | -8.615850e-47 |
| Msa0795660 | Msa1442700 | 0.810250 | 1.265576e-50 | -8.615850e-47 |
| Msa0805500 | Msa1442700 | 0.800633 | 1.314911e-48 | -8.615850e-47 |
| Msa0808270 | Msa1442700 | 0.803038 | 4.218381e-49 | -8.615850e-47 |
| Msa0812140 | Msa1442700 | 0.801416 | 9.095830e-49 | -8.615850e-47 |
| Msa0814320 | Msa1442700 | 0.814338 | 1.621043e-51 | -8.615850e-47 |
| Msa0838260 | Msa1442700 | 0.807801 | 4.233155e-50 | -8.615850e-47 |
| Msa0126770 | Msa1442700 | 0.814867 | 1.238061e-51 | -8.615850e-47 |
| Msa0127310 | Msa1442700 | 0.812381 | 4.362420e-51 | -8.615850e-47 |
| Msa0132750 | Msa1442700 | 0.827892 | 1.217321e-54 | -8.615850e-47 |
| Msa0142980 | Msa1442700 | 0.800618 | 1.324210e-48 | -8.615850e-47 |
| Msa0177230 | Msa1442700 | 0.803684 | 3.099006e-49 | -8.615850e-47 |
| Msa0180790 | Msa1442700 | -0.805468 | 1.315498e-49 | -8.615850e-47 |
| Msa0226470 | Msa1442700 | 0.824074 | 9.827726e-54 | -8.615850e-47 |
| Msa0227400 | Msa1442700 | 0.812161 | 4.873457e-51 | -8.615850e-47 |
| Msa0229490 | Msa1442700 | -0.801036 | 1.087933e-48 | -8.615850e-47 |
| Msa1237940 | Msa1442700 | 0.806064 | 9.860591e-50 | -8.615850e-47 |
| Msa1240180 | Msa1442700 | 0.806433 | 8.246056e-50 | -8.615850e-47 |
| Msa1240210 | Msa1442700 | 0.805396 | 1.362502e-49 | -8.615850e-47 |
| Msa1265630 | Msa1442700 | 0.810250 | 1.265414e-50 | -8.615850e-47 |
| Msa1270620 | Msa1442700 | 0.824053 | 9.940207e-54 | -8.615850e-47 |
| Msa1270690 | Msa1442700 | 0.826551 | 2.549600e-54 | -8.615850e-47 |
| Msa1295110 | Msa1442700 | 0.814585 | 1.429584e-51 | -8.615850e-47 |
| Msa1306430 | Msa1442700 | 0.802409 | 5.687908e-49 | -8.615850e-47 |
| Msa1306990 | Msa1442700 | 0.818183 | 2.239327e-52 | -8.615850e-47 |
| Msa1320620 | Msa1442700 | 0.800344 | 1.506462e-48 | -8.615850e-47 |
| Msa1340260 | Msa1442700 | 0.813544 | 2.425876e-51 | -8.615850e-47 |
| Msa1343070 | Msa1442700 | 0.804368 | 2.233622e-49 | -8.615850e-47 |
| Msa0385490 | Msa1442700 | 0.806418 | 8.307165e-50 | -8.615850e-47 |
| Msa0419520 | Msa1442700 | 0.823551 | 1.303121e-53 | -8.615850e-47 |
| Msa0450480 | Msa1442700 | 0.811749 | 5.992405e-51 | -8.615850e-47 |
| Msa0458060 | Msa1442700 | 0.801408 | 9.132053e-49 | -8.615850e-47 |
| Msa0465550 | Msa1442700 | 0.829130 | 6.113586e-55 | -8.615850e-47 |
| Msa0466250 | Msa1442700 | 0.807350 | 5.276564e-50 | -8.615850e-47 |
| Msa1014420 | Msa1442700 | 0.808134 | 3.595446e-50 | -8.615850e-47 |
| Msa1041850 | Msa1442700 | 0.806426 | 8.275226e-50 | -8.615850e-47 |
| Msa1050420 | Msa1442700 | 0.815631 | 8.374330e-52 | -8.615850e-47 |
| Msa1055410 | Msa1442700 | 0.819419 | 1.172762e-52 | -8.615850e-47 |
| Msa1077030 | Msa1442700 | 0.810364 | 1.195923e-50 | -8.615850e-47 |
| Msa1093330 | Msa1442700 | 0.827573 | 1.452350e-54 | -8.615850e-47 |
| Msa0264330 | Msa1442700 | 0.808188 | 3.500810e-50 | -8.615850e-47 |
| Msa0289250 | Msa1442700 | 0.802835 | 4.646745e-49 | -8.615850e-47 |
| Msa0294150 | Msa1442700 | 0.823665 | 1.225662e-53 | -8.615850e-47 |
| Msa0304330 | Msa1442700 | 0.800010 | 1.760923e-48 | -8.615850e-47 |
| Msa0306710 | Msa1442700 | 0.817661 | 2.937041e-52 | -8.615850e-47 |
| Msa0309770 | Msa1442700 | 0.809003 | 2.345417e-50 | -8.615850e-47 |
| Msa1126850 | Msa1442700 | 0.808065 | 3.719524e-50 | -8.615850e-47 |
| Msa1138520 | Msa1442700 | 0.819183 | 1.327499e-52 | -8.615850e-47 |
| Msa1152520 | Msa1442700 | 0.800524 | 1.383912e-48 | -8.615850e-47 |
| Msa1163540 | Msa1442700 | 0.838332 | 3.063064e-57 | -8.615850e-47 |
| Msa1171870 | Msa1442700 | 0.800137 | 1.659776e-48 | -8.615850e-47 |
| Msa1179950 | Msa1442700 | 0.827536 | 1.481659e-54 | -8.615850e-47 |
| Msa1179980 | Msa1442700 | 0.827117 | 1.867944e-54 | -8.615850e-47 |
| Msa1190890 | Msa1442700 | -0.805897 | 1.069057e-49 | -8.615850e-47 |
| Msa0484780 | Msa1442700 | 0.801349 | 9.389099e-49 | -8.615850e-47 |
| Msa0511490 | Msa1442700 | 0.813396 | 2.614270e-51 | -8.615850e-47 |
| Msa0546360 | Msa1442700 | 0.816583 | 5.131364e-52 | -8.615850e-47 |
| Msa0546570 | Msa1442700 | 0.806022 | 1.006611e-49 | -8.615850e-47 |
| Msa0547360 | Msa1442700 | 0.800814 | 1.207877e-48 | -8.615850e-47 |
| Msa0550540 | Msa1442700 | 0.809910 | 1.497985e-50 | -8.615850e-47 |
| Msa0550570 | Msa1442700 | 0.805064 | 1.598766e-49 | -8.615850e-47 |
| Msa0556790 | Msa1442700 | 0.818541 | 1.857594e-52 | -8.615850e-47 |
| Msa0558230 | Msa1442700 | 0.807847 | 4.139332e-50 | -8.615850e-47 |
| Msa0600600 | Msa1442700 | 0.806642 | 7.449549e-50 | -8.615850e-47 |
| Msa0849200 | Msa1442700 | 0.811758 | 5.963907e-51 | -8.615850e-47 |
| Msa0850960 | Msa1442700 | 0.804324 | 2.281333e-49 | -8.615850e-47 |
| Msa0876200 | Msa1442700 | 0.806345 | 8.606091e-50 | -8.615850e-47 |
| Msa0895310 | Msa1442700 | 0.804015 | 2.645693e-49 | -8.615850e-47 |
| Msa0920610 | Msa1442700 | 0.803031 | 4.231261e-49 | -8.615850e-47 |
| Msa0926850 | Msa1442700 | 0.803035 | 4.223267e-49 | -8.615850e-47 |
| Msa0970420 | Msa1442700 | 0.810388 | 1.181905e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 13 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATAACAATGGTTTGAATTC+TGG | 0.146314 | tig0030153:+8716 | Msa1442700:CDS |
| TTTCATTACAGAACTCTTTC+TGG | 0.155181 | tig0030153:+9348 | Msa1442700:intron |
| TTTGCAGACCCATCTCTTTC+TGG | 0.168103 | tig0030153:+9374 | Msa1442700:CDS |
| CTTGACATTGTAGGAAATTA+TGG | 0.203840 | tig0030153:+8690 | Msa1442700:intron |
| ATAACAATGGTTTGAATTCT+GGG | 0.303681 | tig0030153:+8717 | Msa1442700:CDS |
| TTCATTACAGAACTCTTTCT+GGG | 0.360973 | tig0030153:+9349 | Msa1442700:intron |
| TCTGGGTTAGATCATACTAA+TGG | 0.367578 | tig0030153:+8734 | Msa1442700:CDS |
| CTGGGTTAGATCATACTAAT+GGG | 0.448053 | tig0030153:+8735 | Msa1442700:CDS |
| TTTATATTCAATAGATGTGG+TGG | 0.536630 | tig0030153:+9070 | Msa1442700:intron |
| CATTACAGAACTCTTTCTGG+GGG | 0.560500 | tig0030153:+9351 | Msa1442700:intron |
| TCATTACAGAACTCTTTCTG+GGG | 0.565777 | tig0030153:+9350 | Msa1442700:intron |
| AATACATTAATTCAAGCACA+AGG | 0.660463 | tig0030153:+9428 | Msa1442700:CDS |
| AAATTATGGAAGCATAACAA+TGG | 0.673525 | tig0030153:+8704 | Msa1442700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTGATAATTTGATTATA+TGG | - | tig0030153:9029-9048 | None:intergenic | 10.0% |
| !!! | ATATTGATAATTTGATTATA+TGG | - | tig0030153:9029-9048 | None:intergenic | 10.0% |
| !! | TAATCAAATTATCAATATCA+TGG | + | tig0030153:9031-9050 | Msa1442700:intron | 15.0% |
| !! | TAATCAAATTATCAATATCA+TGG | + | tig0030153:9031-9050 | Msa1442700:intron | 15.0% |
| !! | GAAAACTTCTTAAAAAAACA+TGG | - | tig0030153:8485-8504 | None:intergenic | 20.0% |
| !! | TATCTAGTTATACTATAATG+AGG | + | tig0030153:8990-9009 | Msa1442700:intron | 20.0% |
| !! | ATCTAGTTATACTATAATGA+GGG | + | tig0030153:8991-9010 | Msa1442700:intron | 20.0% |
| !!! | CTTTTTATATTCAATAGATG+TGG | + | tig0030153:9067-9086 | Msa1442700:intron | 20.0% |
| !! | ATGTGTCATAAAGTAAATAA+TGG | - | tig0030153:9227-9246 | None:intergenic | 20.0% |
| !!! | CATACATGATTTTTTTTCTT+TGG | - | tig0030153:9312-9331 | None:intergenic | 20.0% |
| !!! | AAATCATGTATGAATTTTAC+AGG | + | tig0030153:9320-9339 | Msa1442700:intron | 20.0% |
| !! | GAAAACTTCTTAAAAAAACA+TGG | - | tig0030153:8485-8504 | None:intergenic | 20.0% |
| !! | TATCTAGTTATACTATAATG+AGG | + | tig0030153:8990-9009 | Msa1442700:intron | 20.0% |
| !! | ATCTAGTTATACTATAATGA+GGG | + | tig0030153:8991-9010 | Msa1442700:intron | 20.0% |
| !!! | CTTTTTATATTCAATAGATG+TGG | + | tig0030153:9067-9086 | Msa1442700:intron | 20.0% |
| !! | ATGTGTCATAAAGTAAATAA+TGG | - | tig0030153:9227-9246 | None:intergenic | 20.0% |
| !!! | CATACATGATTTTTTTTCTT+TGG | - | tig0030153:9312-9331 | None:intergenic | 20.0% |
| !!! | AAATCATGTATGAATTTTAC+AGG | + | tig0030153:9320-9339 | Msa1442700:intron | 20.0% |
| ! | ATGACATAATCAATTTAGCA+TGG | - | tig0030153:8515-8534 | None:intergenic | 25.0% |
| ! | TAATGCTTAAGCTTCTAATT+TGG | + | tig0030153:8584-8603 | Msa1442700:intron | 25.0% |
| !! | AAATTATGGAAGCATAACAA+TGG | + | tig0030153:8704-8723 | Msa1442700:CDS | 25.0% |
| ! | ATAACAATGGTTTGAATTCT+GGG | + | tig0030153:8717-8736 | Msa1442700:CDS | 25.0% |
| ! | TGTCATACTAATTATTACTG+TGG | + | tig0030153:8814-8833 | Msa1442700:intron | 25.0% |
| ! | AGAAAGATATCTCCAAATAA+TGG | - | tig0030153:8933-8952 | None:intergenic | 25.0% |
| ! | TTTATATTCAATAGATGTGG+TGG | + | tig0030153:9070-9089 | Msa1442700:intron | 25.0% |
| ! | AATAATGGTGAAAACACATA+TGG | - | tig0030153:9212-9231 | None:intergenic | 25.0% |
| ! | AATTTCTTTCTTCTAGTACA+CGG | - | tig0030153:9275-9294 | None:intergenic | 25.0% |
| ! | AATACATTAATTCAAGCACA+AGG | + | tig0030153:9428-9447 | Msa1442700:CDS | 25.0% |
| ! | ATGACATAATCAATTTAGCA+TGG | - | tig0030153:8515-8534 | None:intergenic | 25.0% |
| ! | TAATGCTTAAGCTTCTAATT+TGG | + | tig0030153:8584-8603 | Msa1442700:intron | 25.0% |
| !! | AAATTATGGAAGCATAACAA+TGG | + | tig0030153:8704-8723 | Msa1442700:CDS | 25.0% |
| ! | ATAACAATGGTTTGAATTCT+GGG | + | tig0030153:8717-8736 | Msa1442700:CDS | 25.0% |
| ! | TGTCATACTAATTATTACTG+TGG | + | tig0030153:8814-8833 | Msa1442700:intron | 25.0% |
| ! | AGAAAGATATCTCCAAATAA+TGG | - | tig0030153:8933-8952 | None:intergenic | 25.0% |
| ! | TTTATATTCAATAGATGTGG+TGG | + | tig0030153:9070-9089 | Msa1442700:intron | 25.0% |
| ! | AATAATGGTGAAAACACATA+TGG | - | tig0030153:9212-9231 | None:intergenic | 25.0% |
| ! | AATTTCTTTCTTCTAGTACA+CGG | - | tig0030153:9275-9294 | None:intergenic | 25.0% |
| ! | AATACATTAATTCAAGCACA+AGG | + | tig0030153:9428-9447 | Msa1442700:CDS | 25.0% |
| TACCTACCTTGATTTAAACT+TGG | - | tig0030153:8409-8428 | None:intergenic | 30.0% | |
| !! | TGTCATACATCATGCTTTTT+AGG | + | tig0030153:8529-8548 | Msa1442700:intron | 30.0% |
| TTTAGGTGCGATATTATCAA+TGG | + | tig0030153:8546-8565 | Msa1442700:intron | 30.0% | |
| GTAGTAACAACAATACTGTT+AGG | - | tig0030153:8671-8690 | None:intergenic | 30.0% | |
| TTGTTACTACTTGACATTGT+AGG | + | tig0030153:8681-8700 | Msa1442700:intron | 30.0% | |
| CTTGACATTGTAGGAAATTA+TGG | + | tig0030153:8690-8709 | Msa1442700:intron | 30.0% | |
| CATAACAATGGTTTGAATTC+TGG | + | tig0030153:8716-8735 | Msa1442700:CDS | 30.0% | |
| TCAGCAATTTCAATGTCAAA+AGG | - | tig0030153:8845-8864 | None:intergenic | 30.0% | |
| ! | TTTTGACATTGAAATTGCTG+AGG | + | tig0030153:8844-8863 | Msa1442700:intron | 30.0% |
| ATTTGAATGGGACCATTATT+TGG | + | tig0030153:8918-8937 | Msa1442700:intron | 30.0% | |
| !! | ATATCTTTCTAGCTGGAAAT+AGG | + | tig0030153:8943-8962 | Msa1442700:intron | 30.0% |
| GCTAACACCAAGAAAATATA+AGG | - | tig0030153:9172-9191 | None:intergenic | 30.0% | |
| TTTCATTACAGAACTCTTTC+TGG | + | tig0030153:9348-9367 | Msa1442700:intron | 30.0% | |
| TTCATTACAGAACTCTTTCT+GGG | + | tig0030153:9349-9368 | Msa1442700:intron | 30.0% | |
| !! | AACTTTTTCCAGAAAGAGAT+GGG | - | tig0030153:9385-9404 | None:intergenic | 30.0% |
| !! | AAACTTTTTCCAGAAAGAGA+TGG | - | tig0030153:9386-9405 | None:intergenic | 30.0% |
| !! | TCTTTCTGGAAAAAGTTTTC+TGG | + | tig0030153:9388-9407 | Msa1442700:CDS | 30.0% |
| TACCTACCTTGATTTAAACT+TGG | - | tig0030153:8409-8428 | None:intergenic | 30.0% | |
| !! | TGTCATACATCATGCTTTTT+AGG | + | tig0030153:8529-8548 | Msa1442700:intron | 30.0% |
| TTTAGGTGCGATATTATCAA+TGG | + | tig0030153:8546-8565 | Msa1442700:intron | 30.0% | |
| GTAGTAACAACAATACTGTT+AGG | - | tig0030153:8671-8690 | None:intergenic | 30.0% | |
| TTGTTACTACTTGACATTGT+AGG | + | tig0030153:8681-8700 | Msa1442700:intron | 30.0% | |
| CTTGACATTGTAGGAAATTA+TGG | + | tig0030153:8690-8709 | Msa1442700:intron | 30.0% | |
| CATAACAATGGTTTGAATTC+TGG | + | tig0030153:8716-8735 | Msa1442700:CDS | 30.0% | |
| TCAGCAATTTCAATGTCAAA+AGG | - | tig0030153:8845-8864 | None:intergenic | 30.0% | |
| ! | TTTTGACATTGAAATTGCTG+AGG | + | tig0030153:8844-8863 | Msa1442700:intron | 30.0% |
| ATTTGAATGGGACCATTATT+TGG | + | tig0030153:8918-8937 | Msa1442700:intron | 30.0% | |
| !! | ATATCTTTCTAGCTGGAAAT+AGG | + | tig0030153:8943-8962 | Msa1442700:intron | 30.0% |
| GCTAACACCAAGAAAATATA+AGG | - | tig0030153:9172-9191 | None:intergenic | 30.0% | |
| TTTCATTACAGAACTCTTTC+TGG | + | tig0030153:9348-9367 | Msa1442700:intron | 30.0% | |
| TTCATTACAGAACTCTTTCT+GGG | + | tig0030153:9349-9368 | Msa1442700:intron | 30.0% | |
| !! | AACTTTTTCCAGAAAGAGAT+GGG | - | tig0030153:9385-9404 | None:intergenic | 30.0% |
| !! | AAACTTTTTCCAGAAAGAGA+TGG | - | tig0030153:9386-9405 | None:intergenic | 30.0% |
| !! | TCTTTCTGGAAAAAGTTTTC+TGG | + | tig0030153:9388-9407 | Msa1442700:CDS | 30.0% |
| GTCCAAGTTTAAATCAAGGT+AGG | + | tig0030153:8404-8423 | Msa1442700:intron | 35.0% | |
| AGATAAAAAGCTTGAGCGTT+TGG | - | tig0030153:8435-8454 | None:intergenic | 35.0% | |
| ! | TCTGGGTTAGATCATACTAA+TGG | + | tig0030153:8734-8753 | Msa1442700:CDS | 35.0% |
| ! | CTGGGTTAGATCATACTAAT+GGG | + | tig0030153:8735-8754 | Msa1442700:CDS | 35.0% |
| !! | CTCTTTTGGTGCATTTGAAT+GGG | + | tig0030153:8906-8925 | Msa1442700:intron | 35.0% |
| ! | TTTGGAGATATCTTTCTAGC+TGG | + | tig0030153:8936-8955 | Msa1442700:intron | 35.0% |
| !! | TTTCTAGCTGGAAATAGGTT+GGG | + | tig0030153:8948-8967 | Msa1442700:intron | 35.0% |
| ! | TCGTGTGCCTTATATTTTCT+TGG | + | tig0030153:9162-9181 | Msa1442700:intron | 35.0% |
| TCATTACAGAACTCTTTCTG+GGG | + | tig0030153:9350-9369 | Msa1442700:intron | 35.0% | |
| GTCCAAGTTTAAATCAAGGT+AGG | + | tig0030153:8404-8423 | Msa1442700:intron | 35.0% | |
| AGATAAAAAGCTTGAGCGTT+TGG | - | tig0030153:8435-8454 | None:intergenic | 35.0% | |
| ! | TCTGGGTTAGATCATACTAA+TGG | + | tig0030153:8734-8753 | Msa1442700:CDS | 35.0% |
| ! | CTGGGTTAGATCATACTAAT+GGG | + | tig0030153:8735-8754 | Msa1442700:CDS | 35.0% |
| !! | CTCTTTTGGTGCATTTGAAT+GGG | + | tig0030153:8906-8925 | Msa1442700:intron | 35.0% |
| ! | TTTGGAGATATCTTTCTAGC+TGG | + | tig0030153:8936-8955 | Msa1442700:intron | 35.0% |
| !! | TTTCTAGCTGGAAATAGGTT+GGG | + | tig0030153:8948-8967 | Msa1442700:intron | 35.0% |
| ! | TCGTGTGCCTTATATTTTCT+TGG | + | tig0030153:9162-9181 | Msa1442700:intron | 35.0% |
| TCATTACAGAACTCTTTCTG+GGG | + | tig0030153:9350-9369 | Msa1442700:intron | 35.0% | |
| AAATTGCTGAGGACAAGCAT+TGG | + | tig0030153:8855-8874 | Msa1442700:intron | 40.0% | |
| AATTGCTGAGGACAAGCATT+GGG | + | tig0030153:8856-8875 | Msa1442700:intron | 40.0% | |
| TGGGTAGTAAAACGACTCTT+TGG | + | tig0030153:8875-8894 | Msa1442700:intron | 40.0% | |
| CCATTCAAATGCACCAAAAG+AGG | - | tig0030153:8908-8927 | None:intergenic | 40.0% | |
| !! | CCTCTTTTGGTGCATTTGAA+TGG | + | tig0030153:8905-8924 | Msa1442700:intron | 40.0% |
| !! | CTTTCTAGCTGGAAATAGGT+TGG | + | tig0030153:8947-8966 | Msa1442700:intron | 40.0% |
| ! | ATTCAATAGATGTGGTGGTG+TGG | + | tig0030153:9075-9094 | Msa1442700:intron | 40.0% |
| ! | TGGGAGAGTACAAAGATTAC+AGG | - | tig0030153:9129-9148 | None:intergenic | 40.0% |
| CATTACAGAACTCTTTCTGG+GGG | + | tig0030153:9351-9370 | Msa1442700:intron | 40.0% | |
| AAATTGCTGAGGACAAGCAT+TGG | + | tig0030153:8855-8874 | Msa1442700:intron | 40.0% | |
| AATTGCTGAGGACAAGCATT+GGG | + | tig0030153:8856-8875 | Msa1442700:intron | 40.0% | |
| TGGGTAGTAAAACGACTCTT+TGG | + | tig0030153:8875-8894 | Msa1442700:intron | 40.0% | |
| CCATTCAAATGCACCAAAAG+AGG | - | tig0030153:8908-8927 | None:intergenic | 40.0% | |
| !! | CCTCTTTTGGTGCATTTGAA+TGG | + | tig0030153:8905-8924 | Msa1442700:intron | 40.0% |
| !! | CTTTCTAGCTGGAAATAGGT+TGG | + | tig0030153:8947-8966 | Msa1442700:intron | 40.0% |
| ! | ATTCAATAGATGTGGTGGTG+TGG | + | tig0030153:9075-9094 | Msa1442700:intron | 40.0% |
| ! | TGGGAGAGTACAAAGATTAC+AGG | - | tig0030153:9129-9148 | None:intergenic | 40.0% |
| CATTACAGAACTCTTTCTGG+GGG | + | tig0030153:9351-9370 | Msa1442700:intron | 40.0% | |
| ! | CTTTGGTCACAGTCCTCTTT+TGG | + | tig0030153:8892-8911 | Msa1442700:intron | 45.0% |
| TTTGTACTCTCCCACTCTTG+TGG | + | tig0030153:9135-9154 | Msa1442700:intron | 45.0% | |
| TTGTACTCTCCCACTCTTGT+GGG | + | tig0030153:9136-9155 | Msa1442700:intron | 45.0% | |
| TTTGCAGACCCATCTCTTTC+TGG | + | tig0030153:9374-9393 | Msa1442700:CDS | 45.0% | |
| ! | CTTTGGTCACAGTCCTCTTT+TGG | + | tig0030153:8892-8911 | Msa1442700:intron | 45.0% |
| TTTGTACTCTCCCACTCTTG+TGG | + | tig0030153:9135-9154 | Msa1442700:intron | 45.0% | |
| TTGTACTCTCCCACTCTTGT+GGG | + | tig0030153:9136-9155 | Msa1442700:intron | 45.0% | |
| TTTGCAGACCCATCTCTTTC+TGG | + | tig0030153:9374-9393 | Msa1442700:CDS | 45.0% | |
| ACACGAAGTCCCACAAGAGT+GGG | - | tig0030153:9148-9167 | None:intergenic | 50.0% | |
| ACACGAAGTCCCACAAGAGT+GGG | - | tig0030153:9148-9167 | None:intergenic | 50.0% | |
| ! | GCTGGAAATAGGTTGGGTGC+AGG | + | tig0030153:8954-8973 | Msa1442700:intron | 55.0% |
| ! | GGAAATAGGTTGGGTGCAGG+TGG | + | tig0030153:8957-8976 | Msa1442700:intron | 55.0% |
| CACACGAAGTCCCACAAGAG+TGG | - | tig0030153:9149-9168 | None:intergenic | 55.0% | |
| ! | GCTGGAAATAGGTTGGGTGC+AGG | + | tig0030153:8954-8973 | Msa1442700:intron | 55.0% |
| ! | GGAAATAGGTTGGGTGCAGG+TGG | + | tig0030153:8957-8976 | Msa1442700:intron | 55.0% |
| CACACGAAGTCCCACAAGAG+TGG | - | tig0030153:9149-9168 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0030153 | gene | 8402 | 9499 | 8402 | ID=Msa1442700;Name=Msa1442700 |
| tig0030153 | mRNA | 8402 | 9499 | 8402 | ID=Msa1442700-mRNA-1;Parent=Msa1442700;Name=Msa1442700-mRNA-1;_AED=0.81;_eAED=0.83;_QI=0|0|0|0.75|0|0.25|4|0|72 |
| tig0030153 | exon | 8402 | 8409 | 8402 | ID=Msa1442700-mRNA-1:exon:13478;Parent=Msa1442700-mRNA-1 |
| tig0030153 | exon | 8703 | 8764 | 8703 | ID=Msa1442700-mRNA-1:exon:13479;Parent=Msa1442700-mRNA-1 |
| tig0030153 | exon | 9084 | 9091 | 9084 | ID=Msa1442700-mRNA-1:exon:13480;Parent=Msa1442700-mRNA-1 |
| tig0030153 | exon | 9359 | 9499 | 9359 | ID=Msa1442700-mRNA-1:exon:13481;Parent=Msa1442700-mRNA-1 |
| tig0030153 | CDS | 8402 | 8409 | 8402 | ID=Msa1442700-mRNA-1:cds;Parent=Msa1442700-mRNA-1 |
| tig0030153 | CDS | 8703 | 8764 | 8703 | ID=Msa1442700-mRNA-1:cds;Parent=Msa1442700-mRNA-1 |
| tig0030153 | CDS | 9084 | 9091 | 9084 | ID=Msa1442700-mRNA-1:cds;Parent=Msa1442700-mRNA-1 |
| tig0030153 | CDS | 9359 | 9499 | 9359 | ID=Msa1442700-mRNA-1:cds;Parent=Msa1442700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
